BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_1_length_353440_cov_65.4262_ID_5170
(353,440 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISHth2 | ISH6 | Halococcus thailandensis | 44 | 0.12 | |
| ISAzs30 | IS21 | Azospirillum sp. | 44 | 0.12 | |
| ISMav8 | IS1380 | Mycobacterium avium | 44 | 0.12 | |
| ISAnsp4 | IS21 | Anaeromyxobacter sp. | 44 | 0.12 | |
| ISAzo40 | IS1380 | Azoarcus sp. | 44 | 0.12 | |
| ISMlu1 | IS256 | Micrococcus luteus | 44 | 0.12 | |
| ISAzo6 | IS1634 | Azoarcus sp. | 44 | 0.12 | |
| ISNamo24 | IS200/IS605 | IS1341 | Natronomonas moolapensis | 42 | 0.49 |
| ISNph12 | IS200/IS605 | IS1341 | Natronomonas pharaonis | 42 | 0.49 |
| ISXoo14 | IS5 | Xanthomonas oryzae | 42 | 0.49 | |
| ISMno13 | IS66 | Methylobacterium nodulans | 42 | 0.49 | |
| ISArsp6 | Tn3 | Arthrobacter sp. | 42 | 0.49 | |
| ISAau2 | IS21 | Arthrobacter aurescens | 42 | 0.49 | |
| ISStma11 | ISL3 | Stenotrophomonas maltophilia | 42 | 0.49 | |
| ISCARN15 | IS66 | Metagenomic data from CARNOULES | 42 | 0.49 | |
| ISAzca2 | IS66 | Azorhizobium caulinodans | 42 | 0.49 | |
| ISAzo9 | IS630 | Azoarcus sp. | 42 | 0.49 | |
| ISCc2 | IS110 | Caulobacter crescentus | 42 | 0.49 | |
| ISBcen18 | IS256 | Burkholderia cenocepacia | 42 | 0.49 | |
| ISMno16 | IS110 | IS1111 | Methylobacterium nodulans | 40 | 1.9 |
| ISMdi15 | IS200/IS605 | IS1341 | Methylobacterium dichloromethanicum | 40 | 1.9 |
| ISHxa1 | IS200/IS605 | IS1341 | Halopiger xanaduensis | 40 | 1.9 |
| ISBte1 | ISKra4 | ISAzba1 | Burkholderia terrae | 40 | 1.9 |
| ISMfu2 | ISKra4 | ISKra4 | Myxococcus fulvus | 40 | 1.9 |
| ISBast1 | IS256 | IS1249 | Bifidobacterium asteroides | 40 | 1.9 |
| ISAzs23 | IS3 | IS3 | Azospirillum sp. | 40 | 1.9 |
| ISSdi1 | IS1182 | Streptomyces diastaticus | 40 | 1.9 | |
| ISRop2 | ISAzo13 | Rhodococcus opacus | 40 | 1.9 | |
| ISMpo7 | IS5 | IS427 | Methylobacterium populi | 40 | 1.9 |
| ISPfr18 | ISL3 | Propionibacterium freudenreichii | 40 | 1.9 | |
| ISAar42 | ISL3 | Arthrobacter arilaitensis | 40 | 1.9 | |
| ISMyma7 | IS1380 | - | Mycobacterium marinum | 40 | 1.9 |
| ISFsp15 | IS1380 | Frankia sp. | 40 | 1.9 | |
| ISAcr5 | IS1380 | Acidiphilium cryptum | 40 | 1.9 | |
| ISRssp8 | IS1380 | Roseovarius sp. | 40 | 1.9 | |
| ISMex35 | IS5 | IS5 | Methylobacterium extorquens | 40 | 1.9 |
| ISMdi20 | IS630 | Methylobacterium dichloromethanicum | 40 | 1.9 | |
| ISMex8 | IS21 | Methylobacterium extorquens | 40 | 1.9 | |
| ISUnCu3 | IS21 | Uncultured bacterium | 40 | 1.9 | |
| ISMsm5 | IS630 | Mycobacterium smegmatis | 40 | 1.9 | |
| ISMsm3 | IS1380 | Mycobacterium smegmatis | 40 | 1.9 | |
| ISNwi5 | IS481 | Nitrobacter winogradskyi | 40 | 1.9 | |
| ISSav2 | IS701 | Streptomyces avermitilis | 40 | 1.9 | |
| ISRba2 | IS4 | IS50 | Rhodopirellula baltica | 40 | 1.9 |
| ISFsp3 | IS21 | Frankia sp. | 40 | 1.9 | |
| ISAzo4 | IS21 | Azoarcus sp. | 40 | 1.9 | |
| ISBcen1 | IS110 | IS1111 | Burkholderia cenocepacia | 40 | 1.9 |
| ISBlo5 | IS256 | Bifidobacterium longum | 40 | 1.9 | |
| ISPpu7 | IS21 | - | Pseudomonas putida | 40 | 1.9 |
| IS1631 | IS21 | - | Bradyrhizobium japonicum | 40 | 1.9 |
| IS1535 | IS607 | Mycobacterium tuberculosis | 40 | 1.9 | |
| IS1474 | IS21 | - | Pseudomonas alcaligenes | 40 | 1.9 |
| ISSna1 | ISNCY | ISDol1 | Streptomyces natalensis | 38 | 7.6 |
| TnXo19 | Tn3 | Xanthomonas oryzae | 38 | 7.6 | |
| TnAs3 | Tn3 | Aeromonas salmonicida | 38 | 7.6 | |
| ISNaoc4 | IS200/IS605 | IS1341 | Natronococcus occultus | 38 | 7.6 |
| ISMno24 | IS91 | Methylobacterium nodulans | 38 | 7.6 | |
| ISSoc14 | IS200/IS605 | IS1341 | Synechococcus sp | 38 | 7.6 |
| ISHru2 | IS200/IS605 | IS605 | Halovivax ruber | 38 | 7.6 |
| ISHti8 | IS5 | Halorhabdus tiamatea | 38 | 7.6 | |
| ISHti7 | IS5 | Halorhabdus tiamatea | 38 | 7.6 | |
| ISNma15 | IS200/IS605 | IS1341 | Natrialba magadii | 38 | 7.6 |
| TnAs1 | Tn3 | Aeromonas salmonicida | 38 | 7.6 | |
| ISAs29 | IS21 | Aeromonas salmonicida | 38 | 7.6 | |
| ISKpn27 | IS481 | Klebsiella pneumoniae | 38 | 7.6 | |
| ISNpe19 | IS5 | Natrinema pellirubrum | 38 | 7.6 | |
| ISGob7 | ISKra4 | ISKra4 | Gemmata obscuriglobus | 38 | 7.6 |
| ISGsp4 | ISLre2 | Geobacillus sp. | 38 | 7.6 | |
| ISNpe2 | IS5 | Natrinema pellirubrum | 38 | 7.6 | |
| ISH31 | ISH6 | Halobacterium sp. | 38 | 7.6 | |
| ISNamo2 | IS5 | ISH1 | Natronomonas moolapensis | 38 | 7.6 |
| ISPa36 | IS21 | Pseudomonas aeruginosa | 38 | 7.6 | |
| ISPve1 | IS21 | Paracoccus versutus | 38 | 7.6 | |
| ISAzs17 | Tn3 | Azospirillum sp. | 38 | 7.6 | |
| ISGeob7 | IS5 | IS427 | Geodermatophilus obscurus | 38 | 7.6 |
| ISPaen3 | IS5 | IS427 | Paenibacillus sp. | 38 | 7.6 |
| ISGau8 | IS30 | Gemmatimonas aurantiaca | 38 | 7.6 | |
| ISPkr1 | IS21 | Paracoccus koreensis | 38 | 7.6 | |
| ISHut1 | IS5 | ISH1 | Halorhabdus utahensis | 38 | 7.6 |
| ISRssp11 | IS5 | Roseovarius sp. | 38 | 7.6 | |
| ISRpa9 | IS5 | IS5 | Rhodopseudomonas palustris | 38 | 7.6 |
| ISRpa8 | IS5 | IS5 | Rhodopseudomonas palustris | 38 | 7.6 |
| ISMno37 | IS6 | Methylobacterium nodulans | 38 | 7.6 | |
| ISMra2 | IS5 | IS427 | Methylobacterium radiotolerans | 38 | 7.6 |
| ISPfr13 | IS3 | IS51 | Propionibacterium freudenreichii | 38 | 7.6 |
| ISPfr10 | IS3 | IS407 | Propionibacterium freudenreichii | 38 | 7.6 |
| ISAar43 | IS3 | IS407 | Arthrobacter arilaitensis | 38 | 7.6 |
| ISMgi1 | IS1380 | Mycobacterium gilvum | 38 | 7.6 | |
| ISBfun3 | IS1182 | Burkholderia fungorum | 38 | 7.6 | |
| ISMdi16 | IS3 | IS407 | Methylobacterium dichloromethanicum | 38 | 7.6 |
| ISMdi3 | IS3 | IS407 | Methylobacterium dichloromethanicum | 38 | 7.6 |
| ISMex40 | IS5 | IS1031 | Methylobacterium extorquens | 38 | 7.6 |
| ISMex38 | Tn3 | Methylobacterium extorquens | 38 | 7.6 | |
| ISThsp13 | IS1380 | Thiomonas sp. | 38 | 7.6 | |
| ISThsp12 | IS1634 | Thiomonas sp. | 38 | 7.6 | |
| ISAzo34 | IS256 | Azoarcus sp. | 38 | 7.6 | |
| ISAzo32 | IS630 | Azoarcus sp. | 38 | 7.6 | |
| ISAzo17 | IS21 | Azoarcus sp. | 38 | 7.6 | |
| ISCARN48 | IS66 | Metagenomic data from CARNOULES | 38 | 7.6 | |
| ISKrh3 | IS481 | Kocuria rhizophila | 38 | 7.6 | |
| ISGdi17 | IS21 | Gluconacetobacter diazotrophicus | 38 | 7.6 | |
| ISAli7 | IS256 | Azospirillum lipoferum | 38 | 7.6 | |
| ISAli2 | IS630 | Azospirillum lipoferum | 38 | 7.6 | |
| ISFsp10 | IS66 | ISBst12 | Frankia sp. | 38 | 7.6 |
| IS1557 | ISL3 | Mycobacterium tuberculosis | 38 | 7.6 | |
| ISSpu5 | IS21 | Shewanella putrefaciens | 38 | 7.6 | |
| ISLve2 | IS5 | IS903 | Loktanella vestfoldensis | 38 | 7.6 |
| ISRhosp7 | IS110 | Rhodococcus sp. | 38 | 7.6 | |
| ISSer1 | IS110 | Saccharopolyspora erythraea | 38 | 7.6 | |
| ISMva2 | IS481 | Mycobacterium vanbaalenii | 38 | 7.6 | |
| ISPme1 | IS1380 | Paracoccus methylutens | 38 | 7.6 | |
| ISXac2 | IS3 | IS407 | Xanthomonas axonopodis | 38 | 7.6 |
| ISMyma6 | IS481 | - | Mycobacterium marinum | 38 | 7.6 |
| ISC1332 | IS256 | Sulfolobus solfataricus | 38 | 7.6 | |
| ISFsp1 | ISL3 | Frankia sp. | 38 | 7.6 | |
| ISMyma2 | IS1380 | Mycobacterium marinum | 38 | 7.6 | |
| ISBmu3 | IS21 | Burkholderia multivorans | 38 | 7.6 | |
| ISGsu1 | IS4 | IS4Sa | Geobacter sulfurreducens | 38 | 7.6 |
| ISBlo2 | IS21 | Bifidobacterium longum | 38 | 7.6 | |
| ISHla10 | ISH6 | Halorubrum lacusprofundi | 38 | 7.6 | |
| ISPa42 | Tn3 | Pseudomonas aeruginosa | 38 | 7.6 | |
| ISMt2 | IS21 | - | Mycobacterium tuberculosis | 38 | 7.6 |
| ISBf1 | IS21 | - | Bacteroides fragilis | 38 | 7.6 |
| ISAav1 | IS21 | - | Acidovorax avenae | 38 | 7.6 |
| IS493 | IS5 | ISL2 | Streptomyces lividans | 38 | 7.6 |
| IS4811 | IS5 | IS1031 | Streptomyces lividans | 38 | 7.6 |
| IS1629 | ISAs1 | - | Streptomyces sp. | 38 | 7.6 |
| IS1601 | IS256 | - | Mycobacterium avium | 38 | 7.6 |
| ISHwa14 | IS5 | Haloquadratum walsbyi | 38 | 7.6 | |
| IS1245 | IS256 | - | Mycobacterium avium | 38 | 7.6 |
>ISHth2
Length = 1442
Score = 44.1 bits (22), Expect = 0.12
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 254105 agagcgcctcgacgagctgctcgtcg 254130
|||||||||||||||| |||||||||
Sbjct: 248 agagcgcctcgacgagttgctcgtcg 223
>ISAzs30
Length = 2365
Score = 44.1 bits (22), Expect = 0.12
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 123377 gaggcggagggagggcacagatggtc 123402
|||||||||||||||||||| |||||
Sbjct: 126 gaggcggagggagggcacaggtggtc 151
>ISMav8
Length = 2064
Score = 44.1 bits (22), Expect = 0.12
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 123457 ggtgcccccggcaggattcgaa 123478
||||||||||||||||||||||
Sbjct: 1930 ggtgcccccggcaggattcgaa 1909
>ISAnsp4
Length = 2195
Score = 44.1 bits (22), Expect = 0.12
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 150930 cggcgtagccggccttgacggcagcgccgccgag 150963
||||||||||||||| |||||| |||| ||||||
Sbjct: 1754 cggcgtagccggcctcgacggcggcgcggccgag 1721
>ISAzo40
Length = 1694
Score = 44.1 bits (22), Expect = 0.12
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 301074 cgagctgcgcgagctgaccgac 301095
||||||||||||||||||||||
Sbjct: 396 cgagctgcgcgagctgaccgac 417
>ISMlu1
Length = 1413
Score = 44.1 bits (22), Expect = 0.12
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 192755 ggtcaggccccgggccaccagctcgg 192780
||||||||||||||||||||| ||||
Sbjct: 794 ggtcaggccccgggccaccaggtcgg 769
>ISAzo6
Length = 1925
Score = 44.1 bits (22), Expect = 0.12
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 189559 cgaggcgctcgaggcggtgcgg 189580
||||||||||||||||||||||
Sbjct: 994 cgaggcgctcgaggcggtgcgg 1015
Score = 40.1 bits (20), Expect = 1.9
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 162503 ccgcgtccggctcggcgccg 162522
||||||||||||||||||||
Sbjct: 1735 ccgcgtccggctcggcgccg 1754
>ISNamo24
Length = 1424
Score = 42.1 bits (21), Expect = 0.49
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 270925 cggtcttcgtcggttcctgca 270945
|||||||||||||||||||||
Sbjct: 1298 cggtcttcgtcggttcctgca 1318
>ISNph12
Length = 1424
Score = 42.1 bits (21), Expect = 0.49
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 270925 cggtcttcgtcggttcctgca 270945
|||||||||||||||||||||
Sbjct: 1298 cggtcttcgtcggttcctgca 1318
>ISXoo14
Length = 1310
Score = 42.1 bits (21), Expect = 0.49
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 243814 gcctggagaaggtggatcagg 243834
|||||||||||||||||||||
Sbjct: 1054 gcctggagaaggtggatcagg 1074
>ISMno13
Length = 2459
Score = 42.1 bits (21), Expect = 0.49
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 126398 caaggcgctgctcgccgagga 126418
|||||||||||||||||||||
Sbjct: 973 caaggcgctgctcgccgagga 993
>ISArsp6
Length = 26712
Score = 42.1 bits (21), Expect = 0.49
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 352222 gggtcctcgagggccgggcgg 352242
|||||||||||||||||||||
Sbjct: 24845 gggtcctcgagggccgggcgg 24825
Score = 40.1 bits (20), Expect = 1.9
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 180945 cggcagggtcgccggcgccc 180964
||||||||||||||||||||
Sbjct: 6392 cggcagggtcgccggcgccc 6411
Score = 40.1 bits (20), Expect = 1.9
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 26734 ccgggtcgtctggagtccgg 26753
||||||||||||||||||||
Sbjct: 15292 ccgggtcgtctggagtccgg 15311
Score = 38.2 bits (19), Expect = 7.6
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 293788 tccgcgccgggttccacgaggacggcc 293814
|||||||||| | ||||||||||||||
Sbjct: 9849 tccgcgccggctcccacgaggacggcc 9875
>ISAau2
Length = 2222
Score = 42.1 bits (21), Expect = 0.49
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 246060 tcgtgctcaagccggccgagc 246080
|||||||||||||||||||||
Sbjct: 761 tcgtgctcaagccggccgagc 781
Score = 40.1 bits (20), Expect = 1.9
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 9412 agccgcaccagctcgtcgtg 9431
||||||||||||||||||||
Sbjct: 1867 agccgcaccagctcgtcgtg 1848
>ISStma11
Length = 4621
Score = 42.1 bits (21), Expect = 0.49
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 311382 ggcgtcatcgaggccaaggtg 311402
|||||||||||||||||||||
Sbjct: 3403 ggcgtcatcgaggccaaggtg 3383
>ISCARN15
Length = 2427
Score = 42.1 bits (21), Expect = 0.49
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 351587 cccgcgtcgagcaggcgctgg 351607
|||||||||||||||||||||
Sbjct: 1453 cccgcgtcgagcaggcgctgg 1433
>ISAzca2
Length = 2458
Score = 42.1 bits (21), Expect = 0.49
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 53190 cgagaccatcgagccatggctgcgcgaga 53218
|||| |||| |||||||||||||||||||
Sbjct: 2049 cgaggccatggagccatggctgcgcgaga 2077
Score = 40.1 bits (20), Expect = 1.9
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 231917 agctcaaggccctgctcgaggtcctcga 231944
||||| ||||||||||||||| ||||||
Sbjct: 788 agctccaggccctgctcgagggcctcga 815
>ISAzo9
Length = 1483
Score = 42.1 bits (21), Expect = 0.49
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 285553 acgtgctcgacctctacgccg 285573
|||||||||||||||||||||
Sbjct: 841 acgtgctcgacctctacgccg 861
>ISCc2
Length = 1213
Score = 42.1 bits (21), Expect = 0.49
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 58607 tggccgagatggccgagatcggcac 58631
||||||||||| |||||||||||||
Sbjct: 859 tggccgagatgcccgagatcggcac 883
>ISBcen18
Length = 1372
Score = 42.1 bits (21), Expect = 0.49
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 288842 cgaggtgatggccgaggcgct 288862
|||||||||||||||||||||
Sbjct: 541 cgaggtgatggccgaggcgct 561
>ISMno16
Length = 1404
Score = 40.1 bits (20), Expect = 1.9
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 277606 gccggcccgggccgggtcgt 277625
||||||||||||||||||||
Sbjct: 1097 gccggcccgggccgggtcgt 1078
>ISMdi15
Length = 1344
Score = 40.1 bits (20), Expect = 1.9
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 113621 tacatcgcggccctggaggagcgg 113644
|||| |||||||||||||||||||
Sbjct: 197 tacaacgcggccctggaggagcgg 220
Score = 38.2 bits (19), Expect = 7.6
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 232598 tcctcgcggtcgagcagga 232616
|||||||||||||||||||
Sbjct: 750 tcctcgcggtcgagcagga 768
>ISHxa1
Length = 1457
Score = 40.1 bits (20), Expect = 1.9
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 185701 ccgaccagacgtagaagtcg 185720
||||||||||||||||||||
Sbjct: 601 ccgaccagacgtagaagtcg 620
>ISBte1
Length = 2143
Score = 40.1 bits (20), Expect = 1.9
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 125077 cgccgcgatcgccgccgagc 125096
||||||||||||||||||||
Sbjct: 1249 cgccgcgatcgccgccgagc 1268
>ISMfu2
Length = 1554
Score = 40.1 bits (20), Expect = 1.9
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 203394 ggcacccgcggcgtgagcgt 203413
||||||||||||||||||||
Sbjct: 698 ggcacccgcggcgtgagcgt 717
>ISBast1
Length = 1357
Score = 40.1 bits (20), Expect = 1.9
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 263115 cggcgcgggcccggtcctgc 263134
||||||||||||||||||||
Sbjct: 284 cggcgcgggcccggtcctgc 265
>ISAzs23
Length = 1596
Score = 40.1 bits (20), Expect = 1.9
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 156334 ggagaagctgcggatcctcg 156353
||||||||||||||||||||
Sbjct: 219 ggagaagctgcggatcctcg 238
>ISSdi1
Length = 1789
Score = 40.1 bits (20), Expect = 1.9
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 5238 gctgcccccggctggctggc 5257
||||||||||||||||||||
Sbjct: 625 gctgcccccggctggctggc 644
>ISRop2
Length = 2171
Score = 40.1 bits (20), Expect = 1.9
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 338771 cccgacccgtcggcgccggc 338790
||||||||||||||||||||
Sbjct: 280 cccgacccgtcggcgccggc 261
>ISMpo7
Length = 848
Score = 40.1 bits (20), Expect = 1.9
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 236003 ccgcgtccccagcgcatccagcct 236026
||||||||||||| ||||||||||
Sbjct: 348 ccgcgtccccagcccatccagcct 325
Score = 38.2 bits (19), Expect = 7.6
Identities = 28/31 (90%)
Strand = Plus / Plus
Query: 335072 cgccctctcgctcgccgccctcatcgtcttc 335102
||||||| ||||||||||| |||||| ||||
Sbjct: 796 cgccctcgcgctcgccgccgtcatcgccttc 826
>ISPfr18
Length = 1437
Score = 40.1 bits (20), Expect = 1.9
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 135394 ccctgggcgccgccgccttc 135413
||||||||||||||||||||
Sbjct: 423 ccctgggcgccgccgccttc 404
Score = 38.2 bits (19), Expect = 7.6
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 254384 ggccggcgacgcgctcgac 254402
|||||||||||||||||||
Sbjct: 893 ggccggcgacgcgctcgac 911
>ISAar42
Length = 1443
Score = 40.1 bits (20), Expect = 1.9
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 277196 gacgacccggcccggttcga 277215
||||||||||||||||||||
Sbjct: 577 gacgacccggcccggttcga 596
Score = 38.2 bits (19), Expect = 7.6
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 277612 ccgggccgggtcgtcgatg 277630
|||||||||||||||||||
Sbjct: 591 ccgggccgggtcgtcgatg 573
>ISMyma7
Length = 1694
Score = 40.1 bits (20), Expect = 1.9
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 102380 tgcgcgccgggatgcgggcg 102399
||||||||||||||||||||
Sbjct: 1093 tgcgcgccgggatgcgggcg 1074
>ISFsp15
Length = 1695
Score = 40.1 bits (20), Expect = 1.9
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 102380 tgcgcgccgggatgcgggcg 102399
||||||||||||||||||||
Sbjct: 1083 tgcgcgccgggatgcgggcg 1064
>ISAcr5
Length = 1618
Score = 40.1 bits (20), Expect = 1.9
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 181829 tcgccgtcgaagcgggccag 181848
||||||||||||||||||||
Sbjct: 183 tcgccgtcgaagcgggccag 164
>ISRssp8
Length = 1614
Score = 40.1 bits (20), Expect = 1.9
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 202435 agcgcgctgccgtcgatgcc 202454
||||||||||||||||||||
Sbjct: 936 agcgcgctgccgtcgatgcc 917
>ISMex35
Length = 1294
Score = 40.1 bits (20), Expect = 1.9
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 221059 tgctcgacggccgcgcggac 221078
||||||||||||||||||||
Sbjct: 1020 tgctcgacggccgcgcggac 1001
>ISMdi20
Length = 1056
Score = 40.1 bits (20), Expect = 1.9
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 126907 tcgccggggtgcgcgaggcc 126926
||||||||||||||||||||
Sbjct: 799 tcgccggggtgcgcgaggcc 818
>ISMex8
Length = 2597
Score = 40.1 bits (20), Expect = 1.9
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 238805 cgacgcgatcctcctcggagcgatcggc 238832
||||||||||| |||||| |||||||||
Sbjct: 1431 cgacgcgatccgcctcggtgcgatcggc 1458
>ISUnCu3
Length = 2596
Score = 40.1 bits (20), Expect = 1.9
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 271010 cggtgtccggatgctcgtgg 271029
||||||||||||||||||||
Sbjct: 97 cggtgtccggatgctcgtgg 78
>ISMsm5
Length = 1103
Score = 40.1 bits (20), Expect = 1.9
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 310892 ccggggctcgttcaacagcg 310911
||||||||||||||||||||
Sbjct: 953 ccggggctcgttcaacagcg 972
>ISMsm3
Length = 1695
Score = 40.1 bits (20), Expect = 1.9
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 74059 gttcgccgagctggccacggcggtcgcc 74086
||||||||| |||||| |||||||||||
Sbjct: 300 gttcgccgatctggccgcggcggtcgcc 327
>ISNwi5
Length = 1003
Score = 40.1 bits (20), Expect = 1.9
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 105034 tcacggcatcagccggctcc 105053
||||||||||||||||||||
Sbjct: 380 tcacggcatcagccggctcc 399
>ISSav2
Length = 1938
Score = 40.1 bits (20), Expect = 1.9
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 184068 gtcgacgagaccggcgacgt 184087
||||||||||||||||||||
Sbjct: 930 gtcgacgagaccggcgacgt 949
>ISRba2
Length = 1365
Score = 40.1 bits (20), Expect = 1.9
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 240175 tcatcgagtcgctgcgacagctcg 240198
|||||||| |||||||||||||||
Sbjct: 230 tcatcgagccgctgcgacagctcg 253
>ISFsp3
Length = 2209
Score = 40.1 bits (20), Expect = 1.9
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 116836 acgccgaggtcctcgccctcgccg 116859
|||||||||||||| |||||||||
Sbjct: 2056 acgccgaggtcctcaccctcgccg 2079
>ISAzo4
Length = 2757
Score = 40.1 bits (20), Expect = 1.9
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 35455 ggcgggccgccgcgtcgcgg 35474
||||||||||||||||||||
Sbjct: 1362 ggcgggccgccgcgtcgcgg 1381
Score = 38.2 bits (19), Expect = 7.6
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 301794 gctcttcgaggagctgcgc 301812
|||||||||||||||||||
Sbjct: 2230 gctcttcgaggagctgcgc 2248
Score = 38.2 bits (19), Expect = 7.6
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 15564 ctgctcgacgaccgcgtcg 15582
|||||||||||||||||||
Sbjct: 2372 ctgctcgacgaccgcgtcg 2390
>ISBcen1
Length = 1357
Score = 40.1 bits (20), Expect = 1.9
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 16885 tgggtccggaccatgctggc 16904
||||||||||||||||||||
Sbjct: 960 tgggtccggaccatgctggc 979
>ISBlo5
Length = 1366
Score = 40.1 bits (20), Expect = 1.9
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 246717 tcgacgacgaggccgacgcgatcgccaa 246744
|||||| ||||||||||| |||||||||
Sbjct: 225 tcgacgccgaggccgacgagatcgccaa 252
>ISPpu7
Length = 2598
Score = 40.1 bits (20), Expect = 1.9
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 271010 cggtgtccggatgctcgtgg 271029
||||||||||||||||||||
Sbjct: 97 cggtgtccggatgctcgtgg 78
>IS1631
Length = 2712
Score = 40.1 bits (20), Expect = 1.9
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 71325 gctcgaccagccgcgccgga 71344
||||||||||||||||||||
Sbjct: 1527 gctcgaccagccgcgccgga 1508
>IS1535
Length = 2300
Score = 40.1 bits (20), Expect = 1.9
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 55372 ctggtcaacacggccgcctcggcg 55395
|||||||| |||||||||||||||
Sbjct: 155 ctggtcaagacggccgcctcggcg 178
>IS1474
Length = 2633
Score = 40.1 bits (20), Expect = 1.9
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 254322 gagcaggccgaggcaggcgc 254341
||||||||||||||||||||
Sbjct: 1573 gagcaggccgaggcaggcgc 1554
>ISSna1
Length = 1560
Score = 38.2 bits (19), Expect = 7.6
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 182562 gccggtcgatctcgcccag 182580
|||||||||||||||||||
Sbjct: 760 gccggtcgatctcgcccag 742
>TnXo19
Length = 18767
Score = 38.2 bits (19), Expect = 7.6
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 303507 acggcgttcatgctgatcg 303525
|||||||||||||||||||
Sbjct: 4417 acggcgttcatgctgatcg 4435
>TnAs3
Length = 18735
Score = 38.2 bits (19), Expect = 7.6
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 35620 cgacgcgggcctgctgctg 35638
|||||||||||||||||||
Sbjct: 2244 cgacgcgggcctgctgctg 2226
>ISNaoc4
Length = 1568
Score = 38.2 bits (19), Expect = 7.6
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 72136 cgtacttcgtcgccgtgga 72154
|||||||||||||||||||
Sbjct: 1244 cgtacttcgtcgccgtgga 1262
>ISMno24
Length = 2157
Score = 38.2 bits (19), Expect = 7.6
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 25363 gatccgggcggcctcggcg 25381
|||||||||||||||||||
Sbjct: 1452 gatccgggcggcctcggcg 1470
>ISSoc14
Length = 1370
Score = 38.2 bits (19), Expect = 7.6
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 33201 cgccgtcgaggtggacggg 33219
|||||||||||||||||||
Sbjct: 365 cgccgtcgaggtggacggg 347
>ISHru2
Length = 1942
Score = 38.2 bits (19), Expect = 7.6
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 100060 cgcggacgaggtgttgcggctgt 100082
|||||||| ||||||||||||||
Sbjct: 1510 cgcggacgcggtgttgcggctgt 1488
>ISHti8
Length = 1063
Score = 38.2 bits (19), Expect = 7.6
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 18049 cctcgggcaggtctgcgcccgag 18071
||||||||| |||||||||||||
Sbjct: 913 cctcgggcacgtctgcgcccgag 935
>ISHti7
Length = 1063
Score = 38.2 bits (19), Expect = 7.6
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 284270 gacgcggcctcgggcgcgg 284288
|||||||||||||||||||
Sbjct: 943 gacgcggcctcgggcgcgg 925
>ISNma15
Length = 1475
Score = 38.2 bits (19), Expect = 7.6
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 246455 ttcgagacggccgtgaaga 246473
|||||||||||||||||||
Sbjct: 828 ttcgagacggccgtgaaga 846
>TnAs1
Length = 6694
Score = 38.2 bits (19), Expect = 7.6
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 291121 cgcaccttcgccaaggacc 291139
|||||||||||||||||||
Sbjct: 1125 cgcaccttcgccaaggacc 1143
Score = 38.2 bits (19), Expect = 7.6
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 276532 gaagccggccgtgtcggtg 276550
|||||||||||||||||||
Sbjct: 5965 gaagccggccgtgtcggtg 5947
>ISAs29
Length = 2613
Score = 38.2 bits (19), Expect = 7.6
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 73441 tgcccaggcgctcggcctg 73459
|||||||||||||||||||
Sbjct: 356 tgcccaggcgctcggcctg 374
>ISKpn27
Length = 1080
Score = 38.2 bits (19), Expect = 7.6
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 267130 ctggtcggcatagagctcg 267148
|||||||||||||||||||
Sbjct: 635 ctggtcggcatagagctcg 617
>ISNpe19
Length = 1063
Score = 38.2 bits (19), Expect = 7.6
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 284270 gacgcggcctcgggcgcgg 284288
|||||||||||||||||||
Sbjct: 943 gacgcggcctcgggcgcgg 925
>ISGob7
Length = 1463
Score = 38.2 bits (19), Expect = 7.6
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 50542 agtgcgccgaccacggcga 50560
|||||||||||||||||||
Sbjct: 791 agtgcgccgaccacggcga 809
>ISGsp4
Length = 1707
Score = 38.2 bits (19), Expect = 7.6
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 250758 cagcgtgccgagggcgctg 250776
|||||||||||||||||||
Sbjct: 1114 cagcgtgccgagggcgctg 1096
>ISNpe2
Length = 1069
Score = 38.2 bits (19), Expect = 7.6
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 284270 gacgcggcctcgggcgcgg 284288
|||||||||||||||||||
Sbjct: 943 gacgcggcctcgggcgcgg 925
>ISH31
Length = 1445
Score = 38.2 bits (19), Expect = 7.6
Identities = 31/35 (88%)
Strand = Plus / Plus
Query: 300654 gctgctcgagcgcctcgaggcggccagcgtcgagg 300688
|||| ||||| ||||||| || |||||||||||||
Sbjct: 208 gctggtcgagagcctcgacgccgccagcgtcgagg 242
>ISNamo2
Length = 937
Score = 38.2 bits (19), Expect = 7.6
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 59175 cgtcggccagcaggtcgccctgc 59197
|||||||| ||||||||||||||
Sbjct: 575 cgtcggcccgcaggtcgccctgc 597
>ISPa36
Length = 2468
Score = 38.2 bits (19), Expect = 7.6
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 239436 ttcgagcccgtgcacgggt 239454
|||||||||||||||||||
Sbjct: 1418 ttcgagcccgtgcacgggt 1400
>ISPve1
Length = 2503
Score = 38.2 bits (19), Expect = 7.6
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 278807 gcctcggcaaccgccgccg 278825
|||||||||||||||||||
Sbjct: 620 gcctcggcaaccgccgccg 602
>ISAzs17
Length = 7252
Score = 38.2 bits (19), Expect = 7.6
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 345492 gaccttggcgacctcggcc 345510
|||||||||||||||||||
Sbjct: 2520 gaccttggcgacctcggcc 2538
>ISGeob7
Length = 883
Score = 38.2 bits (19), Expect = 7.6
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 344585 ccggcggcgcgcagctcggcgag 344607
||||| |||||||||||||||||
Sbjct: 355 ccggccgcgcgcagctcggcgag 333
>ISPaen3
Length = 914
Score = 38.2 bits (19), Expect = 7.6
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 89198 cggtcgcggagcagccggc 89216
|||||||||||||||||||
Sbjct: 604 cggtcgcggagcagccggc 586
>ISGau8
Length = 1364
Score = 38.2 bits (19), Expect = 7.6
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 104552 gccccgcgccagcgcccgc 104570
|||||||||||||||||||
Sbjct: 352 gccccgcgccagcgcccgc 334
>ISPkr1
Length = 2469
Score = 38.2 bits (19), Expect = 7.6
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 235405 ccgaggctgcggggacccc 235423
|||||||||||||||||||
Sbjct: 1478 ccgaggctgcggggacccc 1460
>ISHut1
Length = 926
Score = 38.2 bits (19), Expect = 7.6
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 212600 catcaccgacatccactcg 212618
|||||||||||||||||||
Sbjct: 516 catcaccgacatccactcg 534
>ISRssp11
Length = 1356
Score = 38.2 bits (19), Expect = 7.6
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 107578 gcgacatgtccgtggtcag 107596
|||||||||||||||||||
Sbjct: 446 gcgacatgtccgtggtcag 428
>ISRpa9
Length = 1539
Score = 38.2 bits (19), Expect = 7.6
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 264021 agggcggccagttcgtgct 264039
|||||||||||||||||||
Sbjct: 1071 agggcggccagttcgtgct 1089
>ISRpa8
Length = 1540
Score = 38.2 bits (19), Expect = 7.6
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 264021 agggcggccagttcgtgct 264039
|||||||||||||||||||
Sbjct: 1072 agggcggccagttcgtgct 1090
>ISMno37
Length = 889
Score = 38.2 bits (19), Expect = 7.6
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 172664 cctcgccctcgagctgaagcgcc 172686
|||||||||| ||||||||||||
Sbjct: 96 cctcgccctcaagctgaagcgcc 118
>ISMra2
Length = 905
Score = 38.2 bits (19), Expect = 7.6
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 214368 ctacttcgccatggtcaccctcg 214390
|||| ||||||||||||||||||
Sbjct: 842 ctacctcgccatggtcaccctcg 864
>ISPfr13
Length = 1383
Score = 38.2 bits (19), Expect = 7.6
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 391 gatcgtcgtggacgcggtc 409
|||||||||||||||||||
Sbjct: 513 gatcgtcgtggacgcggtc 531
>ISPfr10
Length = 1247
Score = 38.2 bits (19), Expect = 7.6
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 67274 catcgtcgacgagcacacc 67292
|||||||||||||||||||
Sbjct: 790 catcgtcgacgagcacacc 808
>ISAar43
Length = 1247
Score = 38.2 bits (19), Expect = 7.6
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 67274 catcgtcgacgagcacacc 67292
|||||||||||||||||||
Sbjct: 790 catcgtcgacgagcacacc 808
>ISMgi1
Length = 1614
Score = 38.2 bits (19), Expect = 7.6
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 100269 agctgcgccagggcggcttccag 100291
||||||||||||||||| |||||
Sbjct: 758 agctgcgccagggcggcgtccag 736
>ISBfun3
Length = 1627
Score = 38.2 bits (19), Expect = 7.6
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 144511 tgcgcaagatcgacgcggc 144529
|||||||||||||||||||
Sbjct: 144 tgcgcaagatcgacgcggc 162
>ISMdi16
Length = 1271
Score = 38.2 bits (19), Expect = 7.6
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 115470 gatcgcggcggacggctcacaga 115492
||||||||||| |||||||||||
Sbjct: 934 gatcgcggcggtcggctcacaga 956
>ISMdi3
Length = 1246
Score = 38.2 bits (19), Expect = 7.6
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 155511 tcaacagcctcggtctgaccgaggcgc 155537
|||||||||||||| ||| ||||||||
Sbjct: 823 tcaacagcctcggtgtgatcgaggcgc 849
>ISMex40
Length = 918
Score = 38.2 bits (19), Expect = 7.6
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 181304 accacctcgtcatggctga 181322
|||||||||||||||||||
Sbjct: 373 accacctcgtcatggctga 391
>ISMex38
Length = 3841
Score = 38.2 bits (19), Expect = 7.6
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 195676 gccgccctgaagatcgtcgaggccggc 195702
|||||||||||| ||||| ||||||||
Sbjct: 209 gccgccctgaagctcgtccaggccggc 183
>ISThsp13
Length = 1583
Score = 38.2 bits (19), Expect = 7.6
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 8552 cgcccgagctggcgccacccggc 8574
||||||||||||||| |||||||
Sbjct: 677 cgcccgagctggcgcgacccggc 699
>ISThsp12
Length = 2004
Score = 38.2 bits (19), Expect = 7.6
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 77676 cttccacgtcgacgaggac 77694
|||||||||||||||||||
Sbjct: 1481 cttccacgtcgacgaggac 1499
>ISAzo34
Length = 1439
Score = 38.2 bits (19), Expect = 7.6
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 17321 gctcggcgcgggtgtcggc 17339
|||||||||||||||||||
Sbjct: 430 gctcggcgcgggtgtcggc 448
>ISAzo32
Length = 1100
Score = 38.2 bits (19), Expect = 7.6
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 14723 gatcgacagcgcctggccgaact 14745
|||||||||||||| ||||||||
Sbjct: 407 gatcgacagcgccttgccgaact 385
>ISAzo17
Length = 2095
Score = 38.2 bits (19), Expect = 7.6
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 257974 tcgacgccgccacggacgcggtgcagg 258000
||||||||||||||| | |||||||||
Sbjct: 858 tcgacgccgccacggccacggtgcagg 884
>ISCARN48
Length = 2581
Score = 38.2 bits (19), Expect = 7.6
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 338474 ggtctcgatccgcaacgtc 338492
|||||||||||||||||||
Sbjct: 441 ggtctcgatccgcaacgtc 423
>ISKrh3
Length = 1113
Score = 38.2 bits (19), Expect = 7.6
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 243547 agcggctcgggatcagccg 243565
|||||||||||||||||||
Sbjct: 448 agcggctcgggatcagccg 466
>ISGdi17
Length = 2482
Score = 38.2 bits (19), Expect = 7.6
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 141285 ggccggtgccctcgtcgtc 141303
|||||||||||||||||||
Sbjct: 1643 ggccggtgccctcgtcgtc 1661
>ISAli7
Length = 1416
Score = 38.2 bits (19), Expect = 7.6
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 134833 tcaacgccttcctcgaccg 134851
|||||||||||||||||||
Sbjct: 581 tcaacgccttcctcgaccg 599
>ISAli2
Length = 1171
Score = 38.2 bits (19), Expect = 7.6
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 182439 tggcgcgcggcgcccacag 182457
|||||||||||||||||||
Sbjct: 714 tggcgcgcggcgcccacag 696
>ISFsp10
Length = 1713
Score = 38.2 bits (19), Expect = 7.6
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 71323 ccgctcgaccagccgcgcc 71341
|||||||||||||||||||
Sbjct: 217 ccgctcgaccagccgcgcc 199
Score = 38.2 bits (19), Expect = 7.6
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 50623 ggctcgcacgccgccggcc 50641
|||||||||||||||||||
Sbjct: 781 ggctcgcacgccgccggcc 763
>IS1557
Length = 1509
Score = 38.2 bits (19), Expect = 7.6
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 79159 gctcgacgtcgcgcgcctcggtg 79181
||||||||||| |||||||||||
Sbjct: 918 gctcgacgtcgagcgcctcggtg 896
>ISSpu5
Length = 2556
Score = 38.2 bits (19), Expect = 7.6
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 299640 gcggcgtgctgccgaggcggagc 299662
|||||||||||| ||||||||||
Sbjct: 291 gcggcgtgctgctgaggcggagc 313
>ISLve2
Length = 1054
Score = 38.2 bits (19), Expect = 7.6
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 12923 acgctggagatccgcgcga 12941
|||||||||||||||||||
Sbjct: 536 acgctggagatccgcgcga 554
>ISRhosp7
Length = 1455
Score = 38.2 bits (19), Expect = 7.6
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 73617 ccgccctcgagcgggtcct 73635
|||||||||||||||||||
Sbjct: 726 ccgccctcgagcgggtcct 744
>ISSer1
Length = 1447
Score = 38.2 bits (19), Expect = 7.6
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 299021 agaccgacgcccgcgacgc 299039
|||||||||||||||||||
Sbjct: 529 agaccgacgcccgcgacgc 547
>ISMva2
Length = 1966
Score = 38.2 bits (19), Expect = 7.6
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 241040 ccgccgcgctggctcgacg 241058
|||||||||||||||||||
Sbjct: 1223 ccgccgcgctggctcgacg 1241
>ISPme1
Length = 1671
Score = 38.2 bits (19), Expect = 7.6
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 333674 ggtgacggcgacctcggcc 333692
|||||||||||||||||||
Sbjct: 1384 ggtgacggcgacctcggcc 1366
>ISXac2
Length = 1195
Score = 38.2 bits (19), Expect = 7.6
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 17302 gcagtcacgagcgggcgca 17320
|||||||||||||||||||
Sbjct: 369 gcagtcacgagcgggcgca 387
>ISMyma6
Length = 1072
Score = 38.2 bits (19), Expect = 7.6
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 6603 cctggccagcgaatgggcc 6621
|||||||||||||||||||
Sbjct: 906 cctggccagcgaatgggcc 924
>ISC1332
Length = 1332
Score = 38.2 bits (19), Expect = 7.6
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 308905 cgaggacttcctccagcag 308923
|||||||||||||||||||
Sbjct: 372 cgaggacttcctccagcag 390
>ISFsp1
Length = 1732
Score = 38.2 bits (19), Expect = 7.6
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 289965 ggcagcgacgttcgccggc 289983
|||||||||||||||||||
Sbjct: 651 ggcagcgacgttcgccggc 669
>ISMyma2
Length = 1679
Score = 38.2 bits (19), Expect = 7.6
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 250548 ccacgtcggcgccgcgtcg 250566
|||||||||||||||||||
Sbjct: 602 ccacgtcggcgccgcgtcg 584
>ISBmu3
Length = 2697
Score = 38.2 bits (19), Expect = 7.6
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 265089 tcgccgacgaccagctcgagatc 265111
||||||||||| |||||||||||
Sbjct: 459 tcgccgacgacgagctcgagatc 481
>ISGsu1
Length = 1240
Score = 38.2 bits (19), Expect = 7.6
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 304590 ggtggtggcatccagcaga 304608
|||||||||||||||||||
Sbjct: 486 ggtggtggcatccagcaga 468
>ISBlo2
Length = 2455
Score = 38.2 bits (19), Expect = 7.6
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 319269 gccgcgcctgacgcacctg 319287
|||||||||||||||||||
Sbjct: 760 gccgcgcctgacgcacctg 778
>ISHla10
Length = 1444
Score = 38.2 bits (19), Expect = 7.6
Identities = 31/35 (88%)
Strand = Plus / Plus
Query: 300654 gctgctcgagcgcctcgaggcggccagcgtcgagg 300688
|||| ||||| ||||||| || |||||||||||||
Sbjct: 207 gctggtcgagagcctcgacgccgccagcgtcgagg 241
>ISPa42
Length = 16941
Score = 38.2 bits (19), Expect = 7.6
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 301383 cctcgaggagcggcacaag 301401
|||||||||||||||||||
Sbjct: 14745 cctcgaggagcggcacaag 14763
>ISMt2
Length = 2645
Score = 38.2 bits (19), Expect = 7.6
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 108905 cgaggtcggcgacccgagc 108923
|||||||||||||||||||
Sbjct: 1571 cgaggtcggcgacccgagc 1589
Score = 38.2 bits (19), Expect = 7.6
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 114797 tgcgcgatgtggccgcgctgcgc 114819
|||||||| ||||||||||||||
Sbjct: 2060 tgcgcgatctggccgcgctgcgc 2082
>ISBf1
Length = 2787
Score = 38.2 bits (19), Expect = 7.6
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 181381 gtggtggctgcggtagacc 181399
|||||||||||||||||||
Sbjct: 1351 gtggtggctgcggtagacc 1333
>ISAav1
Length = 2532
Score = 38.2 bits (19), Expect = 7.6
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 180998 tcgtcggcctcgagccact 181016
|||||||||||||||||||
Sbjct: 235 tcgtcggcctcgagccact 217
>IS493
Length = 1643
Score = 38.2 bits (19), Expect = 7.6
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 325475 tcgtcggtgacgacccagg 325493
|||||||||||||||||||
Sbjct: 246 tcgtcggtgacgacccagg 228
>IS4811
Length = 5396
Score = 38.2 bits (19), Expect = 7.6
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 9382 gctcgagctggctcttcag 9400
|||||||||||||||||||
Sbjct: 2945 gctcgagctggctcttcag 2927
>IS1629
Length = 1462
Score = 38.2 bits (19), Expect = 7.6
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 111877 cctcgccgccgtccgcgac 111895
|||||||||||||||||||
Sbjct: 1303 cctcgccgccgtccgcgac 1321
>IS1601
Length = 1417
Score = 38.2 bits (19), Expect = 7.6
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 201759 gacctcgacgagctcgccgaggcgttc 201785
||||||||||||| || ||||||||||
Sbjct: 552 gacctcgacgagcacgtcgaggcgttc 578
>ISHwa14
Length = 1070
Score = 38.2 bits (19), Expect = 7.6
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 284270 gacgcggcctcgggcgcgg 284288
|||||||||||||||||||
Sbjct: 943 gacgcggcctcgggcgcgg 925
>IS1245
Length = 1414
Score = 38.2 bits (19), Expect = 7.6
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 44023 gatgtcggcggcggcctcg 44041
|||||||||||||||||||
Sbjct: 1072 gatgtcggcggcggcctcg 1054
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_2_length_349398_cov_57.1141_ID_5172
(349,398 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISArsp6 | Tn3 | Arthrobacter sp. | 82 | 6e-13 | |
| ISAzs17 | Tn3 | Azospirillum sp. | 44 | 0.12 | |
| ISNmo4 | IS5 | IS5 | Nitrococcus mobilis | 44 | 0.12 |
| ISSer1 | IS110 | Saccharopolyspora erythraea | 44 | 0.12 | |
| ISCmi2 | IS481 | Clavibacter michiganensis | 44 | 0.12 | |
| IS71 | IS66 | - | Agrobacterium tumefaciens | 44 | 0.12 |
| ISNph26 | IS200/IS605 | IS1341 | Natronomonas pharaonis | 42 | 0.48 |
| ISHth1 | ISH6 | Halococcus thailandensis | 42 | 0.48 | |
| ISStsp7 | IS5 | ISL2 | Streptomyces sp | 42 | 0.48 |
| ISMno19 | IS630 | Methylobacterium nodulans | 42 | 0.48 | |
| ISAau5 | ISNCY | Arthrobacter aurescens | 42 | 0.48 | |
| ISMch7 | IS701 | Methylobacterium chloromethanicum | 42 | 0.48 | |
| ISCur1 | IS1380 | Corynebacterium urealyticum | 42 | 0.48 | |
| ISMex23 | IS200/IS605 | IS1341 | Methylobacterium extorquens | 42 | 0.48 |
| ISThsp10 | IS21 | Thiomonas sp. | 42 | 0.48 | |
| ISAzo32 | IS630 | Azoarcus sp. | 42 | 0.48 | |
| ISAzo18 | IS3 | IS150 | Azoarcus sp. | 42 | 0.48 |
| ISThsp9 | Tn3 | Thiomonas sp. | 42 | 0.48 | |
| ISKpn11 | IS3 | IS150 | Klebsiella pneumoniae | 42 | 0.48 |
| ISStac1 | IS110 | IS1111 | Streptomyces aculeolatus | 42 | 0.48 |
| ISVei2 | IS481 | Verminephrobacter eiseniae | 42 | 0.48 | |
| ISVei3 | IS481 | Verminephrobacter eiseniae | 42 | 0.48 | |
| ISCef4 | IS4 | IS4 | Corynebacterium efficiens | 42 | 0.48 |
| ISAzo4 | IS21 | Azoarcus sp. | 42 | 0.48 | |
| ISH8B | IS4 | ISH8 | Halobacterium sp | 42 | 0.48 |
| TnAs3 | Tn3 | Aeromonas salmonicida | 40 | 1.9 | |
| ISAjo2 | ISNCY | IS1202 | Acinetobacter johnsonii | 40 | 1.9 |
| ISMyma9 | IS21 | Mycobacterium marinum | 40 | 1.9 | |
| ISHbo2 | IS200/IS605 | IS1341 | Halogeometricum borinquense | 40 | 1.9 |
| ISGte1 | IS256 | Gordonia terrae | 40 | 1.9 | |
| ISAzs20 | IS66 | Azospirillum sp. | 40 | 1.9 | |
| ISAnsp14 | IS256 | Anaeromyxobacter sp. | 40 | 1.9 | |
| ISPmar3 | IS5 | IS5 | Paracoccus marcusii | 40 | 1.9 |
| ISVsp5 | IS4 | IS4Sa | Verrucomicrobium spinosum | 40 | 1.9 |
| ISPpa7 | IS66 | Paracoccus pantotrophus | 40 | 1.9 | |
| ISSpal2 | IS5 | Sphingopyxis alaskensis | 40 | 1.9 | |
| ISRhsp6 | IS5 | IS5 | Rhodobacter sphaeroides | 40 | 1.9 |
| ISStau6 | ISAzo13 | Stigmatella aurantiaca | 40 | 1.9 | |
| ISStsp1 | ISAzo13 | Streptomyces sp. | 40 | 1.9 | |
| ISMno13 | IS66 | Methylobacterium nodulans | 40 | 1.9 | |
| ISPfr12 | IS3 | IS51 | Propionibacterium freudenreichii | 40 | 1.9 |
| ISAar20 | ISL3 | Arthrobacter arilaitensis | 40 | 1.9 | |
| IS1677 | IS1380 | Corynebacterium glutamicum | 40 | 1.9 | |
| ISMex36 | IS1182 | Methylobacterium extorquens | 40 | 1.9 | |
| ISAnsp4 | IS21 | Anaeromyxobacter sp. | 40 | 1.9 | |
| ISCARN71 | IS5 | IS5 | Metagenomic data from CARNOULES | 40 | 1.9 |
| ISCARN44 | IS630 | Metagenomic data from CARNOULES | 40 | 1.9 | |
| ISCARN18 | IS110 | IS1111 | Metagenomic data from CARNOULES | 40 | 1.9 |
| ISApr7 | IS1595 | ISNwi1 | Alpha proteobacterium | 40 | 1.9 |
| ISAfe8 | IS200/IS605 | IS1341 | Acidithiobacillus ferrooxidans | 40 | 1.9 |
| ISGdi12 | IS701 | Gluconacetobacter diazotrophicus | 40 | 1.9 | |
| ISThsp1 | IS1182 | Thiomonas sp. | 40 | 1.9 | |
| ISMsm4 | ISL3 | Mycobacterium smegmatis | 40 | 1.9 | |
| ISSpo6 | IS630 | Silicibacter pomeroyi | 40 | 1.9 | |
| ISAzo8 | ISAs1 | Azoarcus sp. | 40 | 1.9 | |
| ISKpn6 | IS1182 | Klebsiella pneumoniae | 40 | 1.9 | |
| ISSisp1 | IS3 | IS407 | Silicibacter sp. | 40 | 1.9 |
| ISFsp3 | IS21 | Frankia sp. | 40 | 1.9 | |
| ISBlo5 | IS256 | Bifidobacterium longum | 40 | 1.9 | |
| ISRj2 | IS3 | IS150 | Bradyrhizobium japonicum | 40 | 1.9 |
| IS1136 | IS200/IS605 | IS1341 | Saccharopolyspora erythraea | 40 | 1.9 |
| IS110 | IS110 | - | Streptomyces coelicolor | 40 | 1.9 |
| TnXo19 | Tn3 | Xanthomonas oryzae | 38 | 7.5 | |
| ISMno20 | IS110 | IS1111 | Methylobacterium nodulans | 38 | 7.5 |
| ISHlsp1 | IS200/IS605 | IS605 | Halopiger sp. | 38 | 7.5 |
| ISIde1 | ISL3 | Ideonella dechloratans | 38 | 7.5 | |
| ISStu2 | ISAzo13 | Streptomyces turgidiscabies | 38 | 7.5 | |
| ISGsp5 | ISLre2 | Geobacillus sp. | 38 | 7.5 | |
| ISMlu11 | IS256 | Micrococcus luteus | 38 | 7.5 | |
| ISPa43 | Tn3 | Pseudomonas aeruginosa | 38 | 7.5 | |
| ISSoEn3 | IS21 | Primary endosymbiont of Sitophilus oryzae | 38 | 7.5 | |
| ISAzs36 | IS481 | Azospirillum sp. | 38 | 7.5 | |
| ISAzs24 | IS3 | IS51 | Azospirillum sp. | 38 | 7.5 |
| ISAzs21 | IS66 | Azospirillum sp. | 38 | 7.5 | |
| ISAzs18 | IS66 | Azospirillum sp. | 38 | 7.5 | |
| ISCap2 | IS5 | IS903 | Candidatus Accumulibacter phosphatis | 38 | 7.5 |
| ISStsp8 | IS5 | ISL2 | Streptomyces sp. | 38 | 7.5 |
| ISPth1 | IS5 | IS903 | Paracoccus thiocyanatus | 38 | 7.5 |
| ISRjo3 | ISNCY | ISDol1 | Rhodococcus jostii | 38 | 7.5 |
| ISPfr17 | IS481 | Propionibacterium freudenreichii | 38 | 7.5 | |
| ISPfr11 | IS3 | IS3 | Propionibacterium freudenreichii | 38 | 7.5 |
| ISPfr5 | IS481 | Propionibacterium freudenreichii | 38 | 7.5 | |
| ISArsp3 | IS110 | Arthrobacter sp. | 38 | 7.5 | |
| ISAar43 | IS3 | IS407 | Arthrobacter arilaitensis | 38 | 7.5 |
| ISMch1 | IS3 | IS150 | Methylobacterium chloromethanicum | 38 | 7.5 |
| ISMgi4 | IS1182 | Mycobacterium gilvum | 38 | 7.5 | |
| ISStr1 | IS1380 | Salinispora tropica | 38 | 7.5 | |
| ISRer1 | IS1380 | Rhodococcus erythropolis | 38 | 7.5 | |
| ISStsp3 | IS1380 | Streptomyces sp. | 38 | 7.5 | |
| ISCef6 | IS1380 | Corynebacterium efficiens | 38 | 7.5 | |
| ISNha3 | IS1380 | Nitrobacter hamburgensis | 38 | 7.5 | |
| ISMesp2 | IS1380 | Mesorhizobium sp. | 38 | 7.5 | |
| ISApr10 | IS256 | Alpha proteobacterium | 38 | 7.5 | |
| ISApr8 | IS1380 | alpha proteobacterium | 38 | 7.5 | |
| ISAnsp13 | ISAs1 | Anaeromyxobacter sp. | 38 | 7.5 | |
| ISAde2 | IS1182 | Anaeromyxobacter dehalogenans | 38 | 7.5 | |
| ISAde1 | IS66 | Anaeromyxobacter dehalogenans | 38 | 7.5 | |
| ISMex38 | Tn3 | Methylobacterium extorquens | 38 | 7.5 | |
| ISMex21 | IS630 | Methylobacterium extorquens | 38 | 7.5 | |
| ISMex17 | IS110 | Methylobacterium extorquens | 38 | 7.5 | |
| ISMex24 | ISL3 | Methylobacterium extorquens | 38 | 7.5 | |
| ISCARN89 | IS21 | Metagenomic data from CARNOULES | 38 | 7.5 | |
| ISAzo19 | IS66 | Azoarcus sp. | 38 | 7.5 | |
| ISCARN43 | IS1595 | ISPna2 | Metagenomic data from CARNOULES | 38 | 7.5 |
| ISSav7 | IS481 | Streptomyces avermitilis | 38 | 7.5 | |
| ISCARN23 | IS1634 | Metagenomic data from CARNOULES | 38 | 7.5 | |
| ISCARN17 | IS21 | Metagenomic data from CARNOULES | 38 | 7.5 | |
| ISCARN16 | IS21 | Metagenomic data from CARNOULES | 38 | 7.5 | |
| ISRosp4 | IS66 | Roseobacter sp. | 38 | 7.5 | |
| ISAzca2 | IS66 | Azorhizobium caulinodans | 38 | 7.5 | |
| ISAfe4 | IS66 | Acidithiobacillus ferrooxidans | 38 | 7.5 | |
| ISAnsp2 | IS481 | Anaeromyxobacter sp. | 38 | 7.5 | |
| ISMno2 | IS66 | ISBst12 | Methylobacterium nodulans | 38 | 7.5 |
| ISBvu4 | IS66 | Bacteroides vulgatus | 38 | 7.5 | |
| ISDpr4 | IS66 | Delta proteobacterium | 38 | 7.5 | |
| ISAli3 | IS630 | Azospirillum lipoferum | 38 | 7.5 | |
| ISCausp2 | IS1595 | ISNha5 | Caulobacter sp. | 38 | 7.5 |
| ISMpo2 | IS1595 | ISNwi1 | Methylobacterium populi | 38 | 7.5 |
| ISLxc1 | IS21 | Leifsonia xyli | 38 | 7.5 | |
| IS1553 | IS256 | Mycobacterium tuberculosis | 38 | 7.5 | |
| ISBcen28 | IS21 | Burkholderia cenocepacia | 38 | 7.5 | |
| ISKpn4 | IS110 | IS1111 | Klebsiella pneumoniae | 38 | 7.5 |
| ISRhsp3 | IS481 | Rhodobacter sphaeroides | 38 | 7.5 | |
| ISAav4 | IS3 | IS3 | Acidovorax avenae | 38 | 7.5 |
| ISRhosp1 | IS3 | IS3 | Rhodococcus sp. | 38 | 7.5 |
| ISSpo4 | IS5 | IS903 | Silicibacter pomeroyi | 38 | 7.5 |
| ISDra7 | IS4 | ISPepr1 | Deinococcus radiodurans | 38 | 7.5 |
| ISCausp1 | IS3 | IS3 | Caulobacter sp. | 38 | 7.5 |
| ISGsp3 | ISLre2 | Geobacillus sp. | 38 | 7.5 | |
| ISFsp6 | IS4 | IS4 | Frankia sp. | 38 | 7.5 |
| ISHma8 | IS5 | ISH1 | Haloarcula marismortui | 38 | 7.5 |
| ISBcen13 | IS21 | Burkholderia cenocepacia | 38 | 7.5 | |
| ISMyca1 | IS1634 | Mycobacterium canettii | 38 | 7.5 | |
| ISBmu3 | IS21 | Burkholderia multivorans | 38 | 7.5 | |
| ISMmg2 | IS110 | IS1111 | Magnetospirillum magnetotacticum | 38 | 7.5 |
| ISBcen2 | IS110 | IS1111 | Burkholderia cenocepacia | 38 | 7.5 |
| ISBlo11 | IS3 | IS150 | Bifidobacterium longum | 38 | 7.5 |
| ISSco2 | IS481 | Streptomyces coelicolor | 38 | 7.5 | |
| ISH8A | IS4 | ISH8 | Halobacterium sp. | 38 | 7.5 |
| ISH26-1 | IS4 | ISH8 | Halobacterium salinarum | 38 | 7.5 |
| ISH26 | IS4 | ISH8 | Halobacterium salinarum | 38 | 7.5 |
| ISAav1 | IS21 | - | Acidovorax avenae | 38 | 7.5 |
| IS869 | IS5 | IS427 | Agrobacterium tumefaciens | 38 | 7.5 |
| IS469 | ISL3 | - | Streptomyces coelicolor | 38 | 7.5 |
| ISXfu1 | IS5 | IS5 | Xanthomonas fuscans | 38 | 7.5 |
| IS1629 | ISAs1 | - | Streptomyces sp. | 38 | 7.5 |
| IS1601 | IS256 | - | Mycobacterium avium | 38 | 7.5 |
| IS1141 | IS3 | IS3 | Mycobacterium intracellulare | 38 | 7.5 |
| IS112 | IS5 | ISL2 | Streptomyces albus | 38 | 7.5 |
| IS1113 | IS256 | - | Xanthomonas oryzae | 38 | 7.5 |
| IS1106 | IS5 | IS5 | Neisseria meningitidis | 38 | 7.5 |
>ISArsp6
Length = 26712
Score = 81.8 bits (41), Expect = 6e-13
Identities = 137/169 (81%)
Strand = Plus / Minus
Query: 188715 cgtgcgcgtgcaagggcttgccggacagggccaggtgggcctccccgagcgcctcgttct 188774
|||| ||||||| ||||||||||| |||||| ||| || || |||| || |||||||
Sbjct: 13758 cgtgggcgtgcaggggcttgccggccagggcgagggccgcttcgccgatggcgtcgttct 13699
Query: 188775 gcgtggggtgggcgtggacgaggccggcgacgtcctcagggtgcgcctcccagttgacga 188834
| |||||||||||||||| ||||| |||||||||||| || | || ||||||||||| |
Sbjct: 13698 gggtggggtgggcgtggaggaggctggcgacgtcctcgggataggcttcccagttgacca 13639
Query: 188835 tcaactgggcctcgccgatctgctcacccacccgggccccgatcatgtg 188883
| | |||| | |||||||| |||| | |||||||| |||| ||||||
Sbjct: 13638 tgagctggccttcgccgatgagctcgctgacccgggcgccgagcatgtg 13590
Score = 65.9 bits (33), Expect = 3e-08
Identities = 75/89 (84%)
Strand = Plus / Minus
Query: 189104 ccggcgatctcctcggcgacgaagatgccctgcgcgaatccacggtgggccagctgcagc 189163
|||||||| || ||||||||||||||||| ||| ||| || |||||||||||||| ||
Sbjct: 13363 ccggcgatttcttcggcgacgaagatgccttgctggaagccgcggtgggccagctgaagg 13304
Query: 189164 cccgggacgatgtcaccgacggcatagac 189192
|| || |||||||| |||| ||| |||||
Sbjct: 13303 ccgggcacgatgtccccgatggcgtagac 13275
Score = 65.9 bits (33), Expect = 3e-08
Identities = 75/89 (84%)
Strand = Plus / Minus
Query: 97904 tgctacgagtgctcgcaggcgtgcaccgcgtgcgctgacgcgtgtctgagcgaggacatg 97963
|||| ||||||| | ||| | ||||| || ||||| |||||||||||| |||||||||||
Sbjct: 20041 tgcttcgagtgcgcccagacatgcacggcctgcgcggacgcgtgtctgggcgaggacatg 19982
Query: 97964 gtggccgatctgaccacgtgcatccggac 97992
|| ||||| || ||||| || ||||||||
Sbjct: 19981 gtcgccgagctcaccacctgtatccggac 19953
Score = 50.1 bits (25), Expect = 0.002
Identities = 55/65 (84%)
Strand = Plus / Plus
Query: 343402 tctacggcggctacctgcacgcccgcgtcgcccgtggctggaccggcaagcgcgcggcct 343461
|||||| ||||||||| || ||||||| | | || ||||||||||||| ||||| ||||
Sbjct: 10985 tctacgccggctacctccatgcccgcgccacgcgcggctggaccggcacccgcgccgcct 11044
Query: 343462 ggctg 343466
|||||
Sbjct: 11045 ggctg 11049
Score = 48.1 bits (24), Expect = 0.008
Identities = 45/52 (86%)
Strand = Plus / Minus
Query: 189919 cagcgccttggtggggatgcaccctcggtggaggcaggttccaccgagcttg 189970
|||||||||||| |||||||| || ||||| |||||||| || || ||||||
Sbjct: 12548 cagcgccttggtcgggatgcatccacggtgcaggcaggtcccgccaagcttg 12497
Score = 46.1 bits (23), Expect = 0.031
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 189527 gaggcgaactcgacaccgatgacgccgccgccgag 189561
|||||||| || |||||||| ||||||||||||||
Sbjct: 12940 gaggcgaattccacaccgatcacgccgccgccgag 12906
Score = 40.1 bits (20), Expect = 1.9
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 8934 ctgacccagatgatcgccca 8953
||||||||||||||||||||
Sbjct: 21378 ctgacccagatgatcgccca 21359
Score = 38.2 bits (19), Expect = 7.5
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 188958 cgttgccgccgaggttgtactcg 188980
|||| ||||||||||||||||||
Sbjct: 13515 cgttcccgccgaggttgtactcg 13493
>ISAzs17
Length = 7252
Score = 44.1 bits (22), Expect = 0.12
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 213785 cggcgtcgtccggccgacgcaggggc 213810
||||| ||||||||||||||||||||
Sbjct: 1226 cggcggcgtccggccgacgcaggggc 1201
>ISNmo4
Length = 1176
Score = 44.1 bits (22), Expect = 0.12
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 181840 ccacctgctccatctcggcgag 181861
||||||||||||||||||||||
Sbjct: 159 ccacctgctccatctcggcgag 138
>ISSer1
Length = 1447
Score = 44.1 bits (22), Expect = 0.12
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 54353 tcgtcgaggcgatcgtgtccgc 54374
||||||||||||||||||||||
Sbjct: 871 tcgtcgaggcgatcgtgtccgc 892
Score = 44.1 bits (22), Expect = 0.12
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 298143 ggtcggccagggcggcgaaggc 298164
||||||||||||||||||||||
Sbjct: 1272 ggtcggccagggcggcgaaggc 1251
>ISCmi2
Length = 1054
Score = 44.1 bits (22), Expect = 0.12
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 106633 catcgaggacgggtggccggtc 106654
||||||||||||||||||||||
Sbjct: 156 catcgaggacgggtggccggtc 177
>IS71
Length = 2386
Score = 44.1 bits (22), Expect = 0.12
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 156835 cgctgatcgtgcctgccgacct 156856
||||||||||||||||||||||
Sbjct: 1536 cgctgatcgtgcctgccgacct 1515
>ISNph26
Length = 1611
Score = 42.1 bits (21), Expect = 0.48
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 234443 ggcggggcggtgtcctcgccg 234463
|||||||||||||||||||||
Sbjct: 535 ggcggggcggtgtcctcgccg 515
>ISHth1
Length = 1445
Score = 42.1 bits (21), Expect = 0.48
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 291844 gggatgccgccgatcccggcgacgg 291868
||||||||||||||| |||||||||
Sbjct: 498 gggatgccgccgatcacggcgacgg 522
>ISStsp7
Length = 976
Score = 42.1 bits (21), Expect = 0.48
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 316169 cccgcgaccacaccatcgccg 316189
|||||||||||||||||||||
Sbjct: 482 cccgcgaccacaccatcgccg 502
>ISMno19
Length = 1138
Score = 42.1 bits (21), Expect = 0.48
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 266633 gccgtgccggtgatcgtcgtg 266653
|||||||||||||||||||||
Sbjct: 684 gccgtgccggtgatcgtcgtg 664
>ISAau5
Length = 3989
Score = 42.1 bits (21), Expect = 0.48
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 131287 gcggtgaccgcgatgttgtcggtgtggtc 131315
|||||||||||||||| ||||||| ||||
Sbjct: 2575 gcggtgaccgcgatgtcgtcggtgcggtc 2547
>ISMch7
Length = 1412
Score = 42.1 bits (21), Expect = 0.48
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 166899 atcgcccagcggcggccctct 166919
|||||||||||||||||||||
Sbjct: 1073 atcgcccagcggcggccctct 1053
>ISCur1
Length = 1627
Score = 42.1 bits (21), Expect = 0.48
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 306026 agctgcgcttcgaggacgtcg 306046
|||||||||||||||||||||
Sbjct: 1092 agctgcgcttcgaggacgtcg 1112
>ISMex23
Length = 1390
Score = 42.1 bits (21), Expect = 0.48
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 55826 gagcaggaggacctgctccggcagttcgc 55854
|||||||| |||||||||||||||||||
Sbjct: 161 gagcaggaacacctgctccggcagttcgc 189
>ISThsp10
Length = 2501
Score = 42.1 bits (21), Expect = 0.48
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 234395 cgatctggccctcggccgcga 234415
|||||||||||||||||||||
Sbjct: 1198 cgatctggccctcggccgcga 1178
>ISAzo32
Length = 1100
Score = 42.1 bits (21), Expect = 0.48
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 208102 gggcgcgacgatcgacttcgccgac 208126
||||||||||||| |||||||||||
Sbjct: 548 gggcgcgacgatctacttcgccgac 572
>ISAzo18
Length = 1471
Score = 42.1 bits (21), Expect = 0.48
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 64336 cgcgtcaacgtcttcgtcgagcggc 64360
|||| ||||||||||||||||||||
Sbjct: 1014 cgcgacaacgtcttcgtcgagcggc 1038
Score = 40.1 bits (20), Expect = 1.9
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 298849 aggcccgccttggtgagcgc 298868
||||||||||||||||||||
Sbjct: 377 aggcccgccttggtgagcgc 358
>ISThsp9
Length = 6215
Score = 42.1 bits (21), Expect = 0.48
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 316952 acgccgcaggccgagccggccgggctggccgccgaca 316988
||||||||||||||| || | | ||||||||||||||
Sbjct: 539 acgccgcaggccgaggcgacggcgctggccgccgaca 503
>ISKpn11
Length = 1290
Score = 42.1 bits (21), Expect = 0.48
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 64336 cgcgtcaacgtcttcgtcgagcggc 64360
|||| ||||||||||||||||||||
Sbjct: 1017 cgcgacaacgtcttcgtcgagcggc 1041
>ISStac1
Length = 1484
Score = 42.1 bits (21), Expect = 0.48
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 124320 gcttccccaccgcggcgcacctggcctcgtgggccgg 124356
||||||||||||| || ||||||||||| || |||||
Sbjct: 1163 gcttccccaccgccgcccacctggcctcctgcgccgg 1199
>ISVei2
Length = 1082
Score = 42.1 bits (21), Expect = 0.48
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 303211 cggcaaggagttcaccgaccg 303231
|||||||||||||||||||||
Sbjct: 721 cggcaaggagttcaccgaccg 741
>ISVei3
Length = 1080
Score = 42.1 bits (21), Expect = 0.48
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 303211 cggcaaggagttcaccgaccg 303231
|||||||||||||||||||||
Sbjct: 719 cggcaaggagttcaccgaccg 739
>ISCef4
Length = 1451
Score = 42.1 bits (21), Expect = 0.48
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 306553 gtcatcggcgggctgggcacc 306573
|||||||||||||||||||||
Sbjct: 603 gtcatcggcgggctgggcacc 623
>ISAzo4
Length = 2757
Score = 42.1 bits (21), Expect = 0.48
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 197506 cttgccgctgccggtggggcc 197526
|||||||||||||||||||||
Sbjct: 2155 cttgccgctgccggtggggcc 2135
>ISH8B
Length = 1403
Score = 42.1 bits (21), Expect = 0.48
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 239483 cgtgctcgacgaggtcgcgga 239503
|||||||||||||||||||||
Sbjct: 380 cgtgctcgacgaggtcgcgga 360
>TnAs3
Length = 18735
Score = 40.1 bits (20), Expect = 1.9
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 20220 cacctgctccagcgtcgcggtcac 20243
|||||||||||||| |||||||||
Sbjct: 5314 cacctgctccagcggcgcggtcac 5291
Score = 38.2 bits (19), Expect = 7.5
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 199574 ccggtgccgaggtcgtcggcggc 199596
|||||||||| ||||||||||||
Sbjct: 4489 ccggtgccgaagtcgtcggcggc 4467
>ISAjo2
Length = 1482
Score = 40.1 bits (20), Expect = 1.9
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 112792 accagcgagaggttgttgag 112811
||||||||||||||||||||
Sbjct: 1246 accagcgagaggttgttgag 1265
>ISMyma9
Length = 2162
Score = 40.1 bits (20), Expect = 1.9
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 94010 gggcggtgaggtcgaagtcggtga 94033
||||||||| ||||||||||||||
Sbjct: 1557 gggcggtgaagtcgaagtcggtga 1534
>ISHbo2
Length = 1671
Score = 40.1 bits (20), Expect = 1.9
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 234443 ggcggggcggtgtcctcgcc 234462
||||||||||||||||||||
Sbjct: 544 ggcggggcggtgtcctcgcc 525
>ISGte1
Length = 1503
Score = 40.1 bits (20), Expect = 1.9
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 193091 gcgacgaggtcctcgacgcg 193110
||||||||||||||||||||
Sbjct: 578 gcgacgaggtcctcgacgcg 597
>ISAzs20
Length = 2811
Score = 40.1 bits (20), Expect = 1.9
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 230580 tggagcgcgtcgccgagatc 230599
||||||||||||||||||||
Sbjct: 2587 tggagcgcgtcgccgagatc 2606
Score = 38.2 bits (19), Expect = 7.5
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 81561 gggcggcgtccgcctcggc 81579
|||||||||||||||||||
Sbjct: 998 gggcggcgtccgcctcggc 980
>ISAnsp14
Length = 1629
Score = 40.1 bits (20), Expect = 1.9
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 194600 ccgcgacgacgaggtggacg 194619
||||||||||||||||||||
Sbjct: 748 ccgcgacgacgaggtggacg 729
>ISPmar3
Length = 1282
Score = 40.1 bits (20), Expect = 1.9
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 308902 tgcgcgggtcgggcagatcctcga 308925
|||||||| |||||||||||||||
Sbjct: 491 tgcgcggggcgggcagatcctcga 514
>ISVsp5
Length = 1426
Score = 40.1 bits (20), Expect = 1.9
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 303238 caccatcgccctggtggcca 303257
||||||||||||||||||||
Sbjct: 485 caccatcgccctggtggcca 504
>ISPpa7
Length = 2731
Score = 40.1 bits (20), Expect = 1.9
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 228984 gatggcgttctcgaccaggt 229003
||||||||||||||||||||
Sbjct: 2379 gatggcgttctcgaccaggt 2360
>ISSpal2
Length = 1314
Score = 40.1 bits (20), Expect = 1.9
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 162894 ggcctggtgctcggcgcgctcgtc 162917
||||||||| ||||||||||||||
Sbjct: 742 ggcctggtggtcggcgcgctcgtc 765
>ISRhsp6
Length = 1486
Score = 40.1 bits (20), Expect = 1.9
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 45037 tcggggacctcgtcgagctgccgg 45060
||||||| ||||||||||||||||
Sbjct: 832 tcggggatctcgtcgagctgccgg 809
>ISStau6
Length = 1304
Score = 40.1 bits (20), Expect = 1.9
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 44641 acggcctgccccgcggcggc 44660
||||||||||||||||||||
Sbjct: 314 acggcctgccccgcggcggc 295
>ISStsp1
Length = 1694
Score = 40.1 bits (20), Expect = 1.9
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 344939 ctcgtcaccaacacctacccgacc 344962
|||| |||||||||||||||||||
Sbjct: 1147 ctcgacaccaacacctacccgacc 1170
>ISMno13
Length = 2459
Score = 40.1 bits (20), Expect = 1.9
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 69761 gctcggccctcactgccggcgcgg 69784
||||||||||||| ||||||||||
Sbjct: 1169 gctcggccctcaccgccggcgcgg 1146
>ISPfr12
Length = 1350
Score = 40.1 bits (20), Expect = 1.9
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 330498 aggatctcgagctcgcgacg 330517
||||||||||||||||||||
Sbjct: 1171 aggatctcgagctcgcgacg 1190
>ISAar20
Length = 1449
Score = 40.1 bits (20), Expect = 1.9
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 321708 atccagcaggcgtgcggtaccggt 321731
|||||||||||||||||| |||||
Sbjct: 738 atccagcaggcgtgcggtgccggt 715
>IS1677
Length = 1688
Score = 40.1 bits (20), Expect = 1.9
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 228453 gtcggggacgttcaccgcca 228472
||||||||||||||||||||
Sbjct: 1272 gtcggggacgttcaccgcca 1291
>ISMex36
Length = 1467
Score = 40.1 bits (20), Expect = 1.9
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 14385 tgcgcggcgtcgacggcgat 14404
||||||||||||||||||||
Sbjct: 931 tgcgcggcgtcgacggcgat 912
>ISAnsp4
Length = 2195
Score = 40.1 bits (20), Expect = 1.9
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 196813 ggccagctcggcgagccgctcgcg 196836
|||||||||||||||| |||||||
Sbjct: 1811 ggccagctcggcgagcggctcgcg 1834
>ISCARN71
Length = 1299
Score = 40.1 bits (20), Expect = 1.9
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 288426 gatcctgctggtcgagcaga 288445
||||||||||||||||||||
Sbjct: 291 gatcctgctggtcgagcaga 310
>ISCARN44
Length = 1115
Score = 40.1 bits (20), Expect = 1.9
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 46309 atcgagcgcgagcgcggcatcacg 46332
|||||||||||| |||||||||||
Sbjct: 386 atcgagcgcgagtgcggcatcacg 409
>ISCARN18
Length = 1561
Score = 40.1 bits (20), Expect = 1.9
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 224059 acgccggggatctcggcgat 224078
||||||||||||||||||||
Sbjct: 886 acgccggggatctcggcgat 867
>ISApr7
Length = 3923
Score = 40.1 bits (20), Expect = 1.9
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 281024 cgagatgctgcgccagcacg 281043
||||||||||||||||||||
Sbjct: 1088 cgagatgctgcgccagcacg 1107
>ISAfe8
Length = 1472
Score = 40.1 bits (20), Expect = 1.9
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 333260 ccccgtcgatgctgcagcagcaga 333283
|||||||||||| |||||||||||
Sbjct: 358 ccccgtcgatgccgcagcagcaga 381
>ISGdi12
Length = 1419
Score = 40.1 bits (20), Expect = 1.9
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 290672 gtcgccatggccccggatcg 290691
||||||||||||||||||||
Sbjct: 269 gtcgccatggccccggatcg 250
>ISThsp1
Length = 1539
Score = 40.1 bits (20), Expect = 1.9
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 173093 cggccgaggtcgagcggcgcgagg 173116
|||||||| |||||||||||||||
Sbjct: 646 cggccgagatcgagcggcgcgagg 669
Score = 38.2 bits (19), Expect = 7.5
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 278712 agcgcgagtggatcgacgagccgccca 278738
||||| ||||||||| |||||||||||
Sbjct: 1225 agcgcaagtggatcgccgagccgccca 1251
>ISMsm4
Length = 1458
Score = 40.1 bits (20), Expect = 1.9
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 211879 ccatcgagacctggcaggcc 211898
||||||||||||||||||||
Sbjct: 1238 ccatcgagacctggcaggcc 1257
>ISSpo6
Length = 1052
Score = 40.1 bits (20), Expect = 1.9
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 234622 gacgcggcccgcgcggagcgcgac 234645
||||| ||||||||||||||||||
Sbjct: 582 gacgctgcccgcgcggagcgcgac 605
>ISAzo8
Length = 1261
Score = 40.1 bits (20), Expect = 1.9
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 268155 gtgccggacccgctgggcgctgcg 268178
||||||||||||| ||||||||||
Sbjct: 201 gtgccggacccgccgggcgctgcg 178
>ISKpn6
Length = 1540
Score = 40.1 bits (20), Expect = 1.9
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 295780 tcatcgccttgtggcggcgggcgt 295803
|||||||||||||||||| |||||
Sbjct: 521 tcatcgccttgtggcggctggcgt 498
>ISSisp1
Length = 1236
Score = 40.1 bits (20), Expect = 1.9
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 169329 gccaccgaggtgccgtcctc 169348
||||||||||||||||||||
Sbjct: 155 gccaccgaggtgccgtcctc 136
>ISFsp3
Length = 2209
Score = 40.1 bits (20), Expect = 1.9
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 32332 gaccggccgggtgtcggcgc 32351
||||||||||||||||||||
Sbjct: 651 gaccggccgggtgtcggcgc 670
>ISBlo5
Length = 1366
Score = 40.1 bits (20), Expect = 1.9
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 23959 cgacgccgaggccgacgccatcgtcaacgcggccaa 23994
||||||||||||||||| |||| |||||| |||||
Sbjct: 226 cgacgccgaggccgacgagatcgccaacgccgccaa 261
>ISRj2
Length = 1364
Score = 40.1 bits (20), Expect = 1.9
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 298849 aggcccgccttggtgagcgc 298868
||||||||||||||||||||
Sbjct: 375 aggcccgccttggtgagcgc 356
>IS1136
Length = 1402
Score = 40.1 bits (20), Expect = 1.9
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 187167 gcgggccagtccggcgatgttgag 187190
|||||||| |||||||||||||||
Sbjct: 956 gcgggccattccggcgatgttgag 933
>IS110
Length = 1558
Score = 40.1 bits (20), Expect = 1.9
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 124320 gcttccccaccgcggcgcacctggcctc 124347
||||||||||||| || |||||||||||
Sbjct: 1163 gcttccccaccgccgcccacctggcctc 1190
Score = 38.2 bits (19), Expect = 7.5
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 323570 cggctccctcgacatcgtcgtgc 323592
|||| ||||||||||||||||||
Sbjct: 972 cggcaccctcgacatcgtcgtgc 994
>TnXo19
Length = 18767
Score = 38.2 bits (19), Expect = 7.5
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 233275 gaaccatctgtccttctcc 233293
|||||||||||||||||||
Sbjct: 12934 gaaccatctgtccttctcc 12952
Score = 38.2 bits (19), Expect = 7.5
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 292714 gccacgtcctcccgggtga 292732
|||||||||||||||||||
Sbjct: 18567 gccacgtcctcccgggtga 18549
>ISMno20
Length = 1798
Score = 38.2 bits (19), Expect = 7.5
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 207084 gctgctcggcctcaagggg 207102
|||||||||||||||||||
Sbjct: 1072 gctgctcggcctcaagggg 1090
>ISHlsp1
Length = 1853
Score = 38.2 bits (19), Expect = 7.5
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 339474 cagcaggaggtcgaccgcg 339492
|||||||||||||||||||
Sbjct: 655 cagcaggaggtcgaccgcg 673
>ISIde1
Length = 1448
Score = 38.2 bits (19), Expect = 7.5
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 191347 gccgtgttggccagcgccacgac 191369
|||| ||||||||||||||||||
Sbjct: 844 gccgcgttggccagcgccacgac 822
>ISStu2
Length = 1760
Score = 38.2 bits (19), Expect = 7.5
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 24226 gctggccgccgaggcccgg 24244
|||||||||||||||||||
Sbjct: 144 gctggccgccgaggcccgg 162
>ISGsp5
Length = 1706
Score = 38.2 bits (19), Expect = 7.5
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 38239 ggtggccccgatgagcgtcgcga 38261
||||||||||| |||||||||||
Sbjct: 89 ggtggccccgacgagcgtcgcga 67
>ISMlu11
Length = 1434
Score = 38.2 bits (19), Expect = 7.5
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 284820 tcgccgccgcctaccccgaccgg 284842
||||||| |||||||||||||||
Sbjct: 1361 tcgccgcggcctaccccgaccgg 1383
>ISPa43
Length = 19903
Score = 38.2 bits (19), Expect = 7.5
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 136484 ctcgccgaccagctcggcg 136502
|||||||||||||||||||
Sbjct: 3855 ctcgccgaccagctcggcg 3873
Score = 38.2 bits (19), Expect = 7.5
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 161255 tcacgcaccaccaccccgaccac 161277
|||||||| ||||||||||||||
Sbjct: 13994 tcacgcactaccaccccgaccac 14016
Score = 38.2 bits (19), Expect = 7.5
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 2521 gttccgcgggcgccagcgc 2539
|||||||||||||||||||
Sbjct: 17102 gttccgcgggcgccagcgc 17120
>ISSoEn3
Length = 2600
Score = 38.2 bits (19), Expect = 7.5
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 109733 gagcaggcggtcgaggtcg 109751
|||||||||||||||||||
Sbjct: 384 gagcaggcggtcgaggtcg 366
>ISAzs36
Length = 2622
Score = 38.2 bits (19), Expect = 7.5
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 37830 tcgtcgacgaggcgcacga 37848
|||||||||||||||||||
Sbjct: 2034 tcgtcgacgaggcgcacga 2052
>ISAzs24
Length = 1325
Score = 38.2 bits (19), Expect = 7.5
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 84423 gcggtgcgcaccacgatca 84441
|||||||||||||||||||
Sbjct: 690 gcggtgcgcaccacgatca 708
>ISAzs21
Length = 2598
Score = 38.2 bits (19), Expect = 7.5
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 242466 cgggccgcctgctcggcga 242484
|||||||||||||||||||
Sbjct: 1009 cgggccgcctgctcggcga 991
>ISAzs18
Length = 2633
Score = 38.2 bits (19), Expect = 7.5
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 345433 ggccagcggcgccatcagc 345451
|||||||||||||||||||
Sbjct: 1716 ggccagcggcgccatcagc 1698
>ISCap2
Length = 1123
Score = 38.2 bits (19), Expect = 7.5
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 283770 gcctgctcgaccagatcga 283788
|||||||||||||||||||
Sbjct: 635 gcctgctcgaccagatcga 653
>ISStsp8
Length = 881
Score = 38.2 bits (19), Expect = 7.5
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 121098 atccggtccgccgccgact 121116
|||||||||||||||||||
Sbjct: 292 atccggtccgccgccgact 274
>ISPth1
Length = 1054
Score = 38.2 bits (19), Expect = 7.5
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 234264 ccagaccgtccggccgaggcgct 234286
||||| |||||||||||||||||
Sbjct: 817 ccagatcgtccggccgaggcgct 795
>ISRjo3
Length = 1638
Score = 38.2 bits (19), Expect = 7.5
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 187153 aggtcggcgatggcgcgggccag 187175
|||||| ||||||||||||||||
Sbjct: 942 aggtcgtcgatggcgcgggccag 920
>ISPfr17
Length = 1092
Score = 38.2 bits (19), Expect = 7.5
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 323409 gtgctcgcccgcgacggtg 323427
|||||||||||||||||||
Sbjct: 200 gtgctcgcccgcgacggtg 218
>ISPfr11
Length = 1315
Score = 38.2 bits (19), Expect = 7.5
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 74194 cgaggtcgcccaggagctg 74212
|||||||||||||||||||
Sbjct: 173 cgaggtcgcccaggagctg 191
>ISPfr5
Length = 1329
Score = 38.2 bits (19), Expect = 7.5
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 141626 gctcgaggacttccaggac 141644
|||||||||||||||||||
Sbjct: 888 gctcgaggacttccaggac 906
>ISArsp3
Length = 1596
Score = 38.2 bits (19), Expect = 7.5
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 52994 tccgggcctccttcgtgcc 53012
|||||||||||||||||||
Sbjct: 645 tccgggcctccttcgtgcc 663
>ISAar43
Length = 1247
Score = 38.2 bits (19), Expect = 7.5
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 248293 ctcgggcaggccggccggatgctcgcg 248319
||||||||||||| | |||||||||||
Sbjct: 132 ctcgggcaggccgacaggatgctcgcg 158
>ISMch1
Length = 1294
Score = 38.2 bits (19), Expect = 7.5
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 297574 gagcccggcgcgcagctcg 297592
|||||||||||||||||||
Sbjct: 1091 gagcccggcgcgcagctcg 1073
>ISMgi4
Length = 1772
Score = 38.2 bits (19), Expect = 7.5
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 130629 gccggcgccggggacctcg 130647
|||||||||||||||||||
Sbjct: 599 gccggcgccggggacctcg 581
>ISStr1
Length = 1664
Score = 38.2 bits (19), Expect = 7.5
Identities = 28/31 (90%)
Strand = Plus / Plus
Query: 280377 aacatcaccgccgaccacatcggcgcgctcg 280407
|||| |||||||||||||||| ||| |||||
Sbjct: 721 aacaccaccgccgaccacatcagcgtgctcg 751
>ISRer1
Length = 1687
Score = 38.2 bits (19), Expect = 7.5
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 247595 tcaccgaccgtgacggcct 247613
|||||||||||||||||||
Sbjct: 1101 tcaccgaccgtgacggcct 1119
>ISStsp3
Length = 1925
Score = 38.2 bits (19), Expect = 7.5
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 197380 gacgacggtcgccaggtcg 197398
|||||||||||||||||||
Sbjct: 202 gacgacggtcgccaggtcg 220
>ISCef6
Length = 1684
Score = 38.2 bits (19), Expect = 7.5
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 321644 cttcaacctcacccgcgaggccg 321666
||||||||||||||||| |||||
Sbjct: 1314 cttcaacctcacccgcgcggccg 1336
>ISNha3
Length = 1631
Score = 38.2 bits (19), Expect = 7.5
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 256691 gccagggtcgtcgagaccg 256709
|||||||||||||||||||
Sbjct: 1356 gccagggtcgtcgagaccg 1374
>ISMesp2
Length = 1618
Score = 38.2 bits (19), Expect = 7.5
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 158984 ggatcatggcgaccgggcg 159002
|||||||||||||||||||
Sbjct: 714 ggatcatggcgaccgggcg 696
>ISApr10
Length = 1366
Score = 38.2 bits (19), Expect = 7.5
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 40018 ccacggcggcaaggtcgag 40036
|||||||||||||||||||
Sbjct: 257 ccacggcggcaaggtcgag 275
>ISApr8
Length = 1667
Score = 38.2 bits (19), Expect = 7.5
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 316720 caaccagttcggcgagcaggagc 316742
||||||||||||||||| |||||
Sbjct: 663 caaccagttcggcgagctggagc 685
>ISAnsp13
Length = 1367
Score = 38.2 bits (19), Expect = 7.5
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 225877 ggcgagccgggtgccgaggtcgt 225899
||||||| |||||||||||||||
Sbjct: 843 ggcgagcggggtgccgaggtcgt 821
>ISAde2
Length = 1498
Score = 38.2 bits (19), Expect = 7.5
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 260053 ggcggtgctcggtccggcgccgg 260075
||||| |||||||||||||||||
Sbjct: 1391 ggcggagctcggtccggcgccgg 1369
>ISAde1
Length = 2957
Score = 38.2 bits (19), Expect = 7.5
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 45160 ccgagcagatccgcgtcga 45178
|||||||||||||||||||
Sbjct: 1903 ccgagcagatccgcgtcga 1885
>ISMex38
Length = 3841
Score = 38.2 bits (19), Expect = 7.5
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 189890 gcgacgtcggcgacctcggccgc 189912
||||||||||||| |||||||||
Sbjct: 1937 gcgacgtcggcgatctcggccgc 1915
Score = 38.2 bits (19), Expect = 7.5
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 196311 cggcgaggatgacggccag 196329
|||||||||||||||||||
Sbjct: 2653 cggcgaggatgacggccag 2635
>ISMex21
Length = 1040
Score = 38.2 bits (19), Expect = 7.5
Identities = 28/31 (90%)
Strand = Plus / Minus
Query: 169639 caggaagagttcgtgctgcgcaccatcgagg 169669
||||||||||||| ||||||| ||||||||
Sbjct: 314 caggaagagttcgggctgcgcctcatcgagg 284
>ISMex17
Length = 1132
Score = 38.2 bits (19), Expect = 7.5
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 335374 gcgctgttcatgggggcca 335392
|||||||||||||||||||
Sbjct: 936 gcgctgttcatgggggcca 954
>ISMex24
Length = 1677
Score = 38.2 bits (19), Expect = 7.5
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 307985 ggtcgaggcgcgcgagctggtgg 308007
|||||||||||||||| ||||||
Sbjct: 1357 ggtcgaggcgcgcgaggtggtgg 1379
>ISCARN89
Length = 2461
Score = 38.2 bits (19), Expect = 7.5
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 63820 aagccgcgcacgctgctgggcga 63842
|||| ||||||||||||||||||
Sbjct: 1312 aagctgcgcacgctgctgggcga 1334
>ISAzo19
Length = 2423
Score = 38.2 bits (19), Expect = 7.5
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 36192 cgccgggccgccctcgagg 36210
|||||||||||||||||||
Sbjct: 2066 cgccgggccgccctcgagg 2084
>ISCARN43
Length = 1086
Score = 38.2 bits (19), Expect = 7.5
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 35665 aagctcgacggctcgtgcgctgc 35687
||||||||||||| |||||||||
Sbjct: 492 aagctcgacggctggtgcgctgc 470
>ISSav7
Length = 2992
Score = 38.2 bits (19), Expect = 7.5
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 11629 tcgacgccgccgcgaaggccggc 11651
|||||||||||| ||||||||||
Sbjct: 1268 tcgacgccgccgtgaaggccggc 1290
>ISCARN23
Length = 1907
Score = 38.2 bits (19), Expect = 7.5
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 312984 cggcgcgcgtgagcgccgc 313002
|||||||||||||||||||
Sbjct: 1423 cggcgcgcgtgagcgccgc 1405
>ISCARN17
Length = 2539
Score = 38.2 bits (19), Expect = 7.5
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 189740 gcgccctcgacgtagtcgacctg 189762
||||||||| |||||||||||||
Sbjct: 594 gcgccctcgccgtagtcgacctg 572
>ISCARN16
Length = 2594
Score = 38.2 bits (19), Expect = 7.5
Identities = 28/31 (90%)
Strand = Plus / Plus
Query: 61141 ggcacgggcaagacctacctcgccatggcca 61171
||||||||||||||| |||| |||| |||||
Sbjct: 1955 ggcacgggcaagacccacctggccacggcca 1985
>ISRosp4
Length = 2709
Score = 38.2 bits (19), Expect = 7.5
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 47939 aggaggccttcatcgccgcgctg 47961
|||||||||||||||||| ||||
Sbjct: 1070 aggaggccttcatcgccgagctg 1092
>ISAzca2
Length = 2458
Score = 38.2 bits (19), Expect = 7.5
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 99480 ccgagaaggccgagctggtggcc 99502
||||||||||||||| |||||||
Sbjct: 1142 ccgagaaggccgagcgggtggcc 1164
>ISAfe4
Length = 2477
Score = 38.2 bits (19), Expect = 7.5
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 297801 ccgcgccggtcaggacgcc 297819
|||||||||||||||||||
Sbjct: 279 ccgcgccggtcaggacgcc 297
>ISAnsp2
Length = 1298
Score = 38.2 bits (19), Expect = 7.5
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 191548 ttctcggcgagcccgaggtagcc 191570
|||||| ||||||||||||||||
Sbjct: 205 ttctcgacgagcccgaggtagcc 183
>ISMno2
Length = 1419
Score = 38.2 bits (19), Expect = 7.5
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 2753 cgggccgtgtcgacgacgg 2771
|||||||||||||||||||
Sbjct: 1339 cgggccgtgtcgacgacgg 1321
>ISBvu4
Length = 2371
Score = 38.2 bits (19), Expect = 7.5
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 70237 ctgctacgggagcggtcgg 70255
|||||||||||||||||||
Sbjct: 415 ctgctacgggagcggtcgg 397
>ISDpr4
Length = 2431
Score = 38.2 bits (19), Expect = 7.5
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 213425 ggacctcccgcgcgcgggccagcagcc 213451
||||||||||| ||||||||||||||
Sbjct: 2062 ggacctcccgctggcgggccagcagcc 2036
>ISAli3
Length = 1167
Score = 38.2 bits (19), Expect = 7.5
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 114813 gttgccggcgccctccccg 114831
|||||||||||||||||||
Sbjct: 596 gttgccggcgccctccccg 614
>ISCausp2
Length = 7915
Score = 38.2 bits (19), Expect = 7.5
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 143428 ggccgatcaggccgacgac 143446
|||||||||||||||||||
Sbjct: 6882 ggccgatcaggccgacgac 6864
>ISMpo2
Length = 3089
Score = 38.2 bits (19), Expect = 7.5
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 128317 cggctgcgcgaggcgatgc 128335
|||||||||||||||||||
Sbjct: 400 cggctgcgcgaggcgatgc 418
>ISLxc1
Length = 3533
Score = 38.2 bits (19), Expect = 7.5
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 57712 cggccgaaggagcgggcgt 57730
|||||||||||||||||||
Sbjct: 1980 cggccgaaggagcgggcgt 1962
Score = 38.2 bits (19), Expect = 7.5
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 262963 gccgaggccgatgaggagg 262981
|||||||||||||||||||
Sbjct: 3129 gccgaggccgatgaggagg 3111
>IS1553
Length = 1406
Score = 38.2 bits (19), Expect = 7.5
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 250215 gatcctcggcctcgacgtc 250233
|||||||||||||||||||
Sbjct: 715 gatcctcggcctcgacgtc 733
>ISBcen28
Length = 2311
Score = 38.2 bits (19), Expect = 7.5
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 163848 atctcgtcgacgatgagca 163866
|||||||||||||||||||
Sbjct: 1901 atctcgtcgacgatgagca 1883
>ISKpn4
Length = 1377
Score = 38.2 bits (19), Expect = 7.5
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 304119 tcatgatcctcgggatcgt 304137
|||||||||||||||||||
Sbjct: 1220 tcatgatcctcgggatcgt 1238
>ISRhsp3
Length = 1104
Score = 38.2 bits (19), Expect = 7.5
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 295902 cagcaccgcgccgacgggc 295920
|||||||||||||||||||
Sbjct: 776 cagcaccgcgccgacgggc 758
>ISAav4
Length = 1308
Score = 38.2 bits (19), Expect = 7.5
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 327767 ttcgagcgccgcgtcgtcaccga 327789
|||||||||||||||||| ||||
Sbjct: 1196 ttcgagcgccgcgtcgtcgccga 1218
Score = 38.2 bits (19), Expect = 7.5
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 62468 ccgcgtcgtcgccgaggcg 62486
|||||||||||||||||||
Sbjct: 1204 ccgcgtcgtcgccgaggcg 1222
>ISRhosp1
Length = 1321
Score = 38.2 bits (19), Expect = 7.5
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 198818 cgacgtctccaccgcgggtgcgc 198840
||||||| |||||||||||||||
Sbjct: 963 cgacgtcaccaccgcgggtgcgc 941
>ISSpo4
Length = 1092
Score = 38.2 bits (19), Expect = 7.5
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 144561 ccgcgagcccgagcgccagaccaccga 144587
|||||| ||||||||||||||| ||||
Sbjct: 939 ccgcgaccccgagcgccagaccgccga 965
>ISDra7
Length = 1322
Score = 38.2 bits (19), Expect = 7.5
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 130885 cccagacgacgggggcgaa 130903
|||||||||||||||||||
Sbjct: 736 cccagacgacgggggcgaa 754
>ISCausp1
Length = 1262
Score = 38.2 bits (19), Expect = 7.5
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 307043 aggtctcgctcgccgacctgacc 307065
|||||| ||||||||||||||||
Sbjct: 759 aggtctggctcgccgacctgacc 781
>ISGsp3
Length = 1709
Score = 38.2 bits (19), Expect = 7.5
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 38239 ggtggccccgatgagcgtcgcga 38261
||||||||||| |||||||||||
Sbjct: 89 ggtggccccgacgagcgtcgcga 67
>ISFsp6
Length = 1472
Score = 38.2 bits (19), Expect = 7.5
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 320742 cagccagtcgtcggcgacc 320760
|||||||||||||||||||
Sbjct: 293 cagccagtcgtcggcgacc 275
>ISHma8
Length = 937
Score = 38.2 bits (19), Expect = 7.5
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 10952 actcggggagatcggccgc 10970
|||||||||||||||||||
Sbjct: 275 actcggggagatcggccgc 293
>ISBcen13
Length = 1957
Score = 38.2 bits (19), Expect = 7.5
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 163848 atctcgtcgacgatgagca 163866
|||||||||||||||||||
Sbjct: 1632 atctcgtcgacgatgagca 1614
>ISMyca1
Length = 1968
Score = 38.2 bits (19), Expect = 7.5
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 25619 acaaccccgacctggccgacgag 25641
||||||||| |||||||||||||
Sbjct: 1128 acaaccccgccctggccgacgag 1150
>ISBmu3
Length = 2697
Score = 38.2 bits (19), Expect = 7.5
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 279745 gtcgagcgcgagctcgcct 279763
|||||||||||||||||||
Sbjct: 1979 gtcgagcgcgagctcgcct 1997
>ISMmg2
Length = 1380
Score = 38.2 bits (19), Expect = 7.5
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 173136 cctgctcgtggtcggcatg 173154
|||||||||||||||||||
Sbjct: 922 cctgctcgtggtcggcatg 940
>ISBcen2
Length = 1363
Score = 38.2 bits (19), Expect = 7.5
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 337309 gccgagatcgactccgatc 337327
|||||||||||||||||||
Sbjct: 110 gccgagatcgactccgatc 92
>ISBlo11
Length = 1432
Score = 38.2 bits (19), Expect = 7.5
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 321064 ccgacgacccgcgcgtcgacccg 321086
|||||||||||||| ||||||||
Sbjct: 490 ccgacgacccgcgcctcgacccg 512
>ISSco2
Length = 1964
Score = 38.2 bits (19), Expect = 7.5
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 300506 gatggccgtgccgcggcgggccc 300528
|||||||||||||| ||||||||
Sbjct: 1421 gatggccgtgccgctgcgggccc 1399
>ISH8A
Length = 1402
Score = 38.2 bits (19), Expect = 7.5
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 239485 tgctcgacgaggtcgcgga 239503
|||||||||||||||||||
Sbjct: 377 tgctcgacgaggtcgcgga 359
>ISH26-1
Length = 1705
Score = 38.2 bits (19), Expect = 7.5
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 239485 tgctcgacgaggtcgcgga 239503
|||||||||||||||||||
Sbjct: 1012 tgctcgacgaggtcgcgga 1030
>ISH26
Length = 1384
Score = 38.2 bits (19), Expect = 7.5
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 239485 tgctcgacgaggtcgcgga 239503
|||||||||||||||||||
Sbjct: 373 tgctcgacgaggtcgcgga 355
>ISAav1
Length = 2532
Score = 38.2 bits (19), Expect = 7.5
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 151661 tcgtcatcctcgacgagat 151679
|||||||||||||||||||
Sbjct: 2123 tcgtcatcctcgacgagat 2141
>IS869
Length = 849
Score = 38.2 bits (19), Expect = 7.5
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 230748 ggccatcggcatcgacatcggcg 230770
||||||||||||||||| |||||
Sbjct: 483 ggccatcggcatcgacaacggcg 461
>IS469
Length = 1647
Score = 38.2 bits (19), Expect = 7.5
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 154067 aggaggtggccgatgacgg 154085
|||||||||||||||||||
Sbjct: 127 aggaggtggccgatgacgg 145
>ISXfu1
Length = 1162
Score = 38.2 bits (19), Expect = 7.5
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 19179 tcgtgctgctccagcagat 19197
|||||||||||||||||||
Sbjct: 408 tcgtgctgctccagcagat 390
>IS1629
Length = 1462
Score = 38.2 bits (19), Expect = 7.5
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 136044 ttcctcggcgggcaggtcg 136062
|||||||||||||||||||
Sbjct: 1174 ttcctcggcgggcaggtcg 1156
>IS1601
Length = 1417
Score = 38.2 bits (19), Expect = 7.5
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 288236 ccgacctcgtcgcccgcgg 288254
|||||||||||||||||||
Sbjct: 778 ccgacctcgtcgcccgcgg 796
>IS1141
Length = 1588
Score = 38.2 bits (19), Expect = 7.5
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 216235 gcccgccgccacgccacaa 216253
|||||||||||||||||||
Sbjct: 317 gcccgccgccacgccacaa 299
>IS112
Length = 883
Score = 38.2 bits (19), Expect = 7.5
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 121098 atccggtccgccgccgact 121116
|||||||||||||||||||
Sbjct: 292 atccggtccgccgccgact 274
>IS1113
Length = 1306
Score = 38.2 bits (19), Expect = 7.5
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 267261 catgcgccgcatgaccgctcaggcggc 267287
||||||||||||| ||||||||||||
Sbjct: 209 catgcgccgcatgggcgctcaggcggc 235
>IS1106
Length = 1137
Score = 38.2 bits (19), Expect = 7.5
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 197211 ccgtcagcggacggttgcg 197229
|||||||||||||||||||
Sbjct: 747 ccgtcagcggacggttgcg 729
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_3_length_333547_cov_56.1034_ID_5174
(333,547 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISArsp6 | Tn3 | Arthrobacter sp. | 68 | 8e-09 | |
| ISFsp11 | IS66 | ISBst12 | Frankia sp. | 50 | 0.002 |
| ISBsp5 | IS1182 | Bacillus sp. | 46 | 0.029 | |
| ISH3C | ISH3 | Halobacterium sp. | 46 | 0.029 | |
| ISH27-2 | ISH3 | - | Halobacterium salinarum | 46 | 0.029 |
| ISPa43 | Tn3 | Pseudomonas aeruginosa | 44 | 0.12 | |
| ISAzs36 | IS481 | Azospirillum sp. | 44 | 0.12 | |
| ISHla5 | ISH3 | Halorubrum lacusprofundi | 44 | 0.12 | |
| ISHla1 | ISH3 | Halorubrum lacusprofundi | 44 | 0.12 | |
| ISSav7 | IS481 | Streptomyces avermitilis | 44 | 0.12 | |
| ISXac2 | IS3 | IS407 | Xanthomonas axonopodis | 44 | 0.12 |
| ISBj3 | IS3 | IS150 | Bradyrhizobium japonicum | 42 | 0.46 |
| ISPa40 | Tn3 | Pseudomonas aeruginosa | 42 | 0.46 | |
| ISAzs24 | IS3 | IS51 | Azospirillum sp. | 42 | 0.46 |
| ISVsp4 | IS66 | Verrucomicrobium spinosum | 42 | 0.46 | |
| ISBxe5 | IS5 | Burkholderia xenovorans | 42 | 0.46 | |
| ISPfr16 | IS30 | Propionibacterium freudenreichii | 42 | 0.46 | |
| ISAnsp12 | IS66 | Anaeromyxobacter sp. | 42 | 0.46 | |
| ISMdi18 | IS1595 | ISNwi1 | Methylobacterium dichloromethanicum | 42 | 0.46 |
| ISMex10 | ISL3 | Methylobacterium extorquens | 42 | 0.46 | |
| ISAav5 | IS481 | Acidovorax avenae | 42 | 0.46 | |
| ISAisp3 | IS481 | Acidovorax sp. | 42 | 0.46 | |
| IS1372 | IS3 | IS51 | Streptomyces lividans | 42 | 0.46 |
| ISTha3 | IS91 | Thauera sp. | 40 | 1.8 | |
| ISMyo1 | IS256 | Mycobacterium yongonense | 40 | 1.8 | |
| ISAzs20 | IS66 | Azospirillum sp. | 40 | 1.8 | |
| ISBam3 | IS5 | IS903 | Burkholderia ambifaria | 40 | 1.8 |
| ISHwa4 | IS701 | Haloquadratum walsbyi | 40 | 1.8 | |
| ISBusp3 | IS5 | Burkholderia sp. | 40 | 1.8 | |
| ISMno17 | IS1182 | Methylobacterium nodulans | 40 | 1.8 | |
| ISPfr8 | ISL3 | Propionibacterium freudenreichii | 40 | 1.8 | |
| ISMsm10 | IS1380 | Mycobacterium smegmatis | 40 | 1.8 | |
| ISBli4 | IS1380 | Brevibacterium linens | 40 | 1.8 | |
| ISCc5 | IS1182 | Caulobacter crescentus | 40 | 1.8 | |
| ISAnsp9 | ISAs1 | Anaeromyxobacter sp. | 40 | 1.8 | |
| ISMex32 | IS5 | IS427 | Methylobacterium extorquens | 40 | 1.8 |
| ISMex38 | Tn3 | Methylobacterium extorquens | 40 | 1.8 | |
| ISAnsp4 | IS21 | Anaeromyxobacter sp. | 40 | 1.8 | |
| ISSav5 | IS481 | Streptomyces avermitilis | 40 | 1.8 | |
| ISCARN40 | IS256 | Metagenomic data from CARNOULES | 40 | 1.8 | |
| ISBj7_B | IS66 | Bradyrhizobium japonicum | 40 | 1.8 | |
| ISAli10 | IS66 | Azospirillum lipoferum | 40 | 1.8 | |
| ISBlma9 | IS66 | Blastopirellula marina | 40 | 1.8 | |
| ISAeh1 | IS66 | Alkalilimnicola ehrlichei | 40 | 1.8 | |
| ISBusp2 | IS5 | IS5 | Burkholderia sp. | 40 | 1.8 |
| ISCausp2 | IS1595 | ISNha5 | Caulobacter sp. | 40 | 1.8 |
| ISRssp2 | IS1595 | ISNha5 | Roseovarius sp. | 40 | 1.8 |
| ISSsp2 | IS3 | IS150 | Sphingomonas sp. | 40 | 1.8 |
| ISAav4 | IS3 | IS3 | Acidovorax avenae | 40 | 1.8 |
| ISBvi3 | IS3 | IS3 | Burkholderia vietnamiensis | 40 | 1.8 |
| ISMca3 | IS3 | IS51 | Methylococcus capsulatus | 40 | 1.8 |
| ISMmg2 | IS110 | IS1111 | Magnetospirillum magnetotacticum | 40 | 1.8 |
| ISMmg1 | IS110 | IS1111 | Magnetospirillum magnetotacticum | 40 | 1.8 |
| ISMk1 | ISNCY | - | Mycobacterium kansasii | 40 | 1.8 |
| ISMav1 | IS21 | - | Mycobacterium avium | 40 | 1.8 |
| ISPa45 | IS4 | IS4 | Pseudomonas aeruginosa | 40 | 1.8 |
| IS1612 | IS21 | - | Mycobacterium avium | 40 | 1.8 |
| ISSbo1 | IS91 | Shigella boydii | 38 | 7.2 | |
| ISSna1 | ISNCY | ISDol1 | Streptomyces natalensis | 38 | 7.2 |
| TnXo19 | Tn3 | Xanthomonas oryzae | 38 | 7.2 | |
| ISHel2 | IS200/IS605 | IS605 | Haloferax elongans | 38 | 7.2 |
| ISNje1 | IS200/IS605 | IS1341 | Natronococcus jeotgali | 38 | 7.2 |
| ISRsp12 | Tn3 | Rhizhobium sp. | 38 | 7.2 | |
| ISMno21 | IS630 | Methylobacterium nodulans | 38 | 7.2 | |
| ISHwa23 | IS200/IS605 | IS1341 | Haloquadratum walsbyi | 38 | 7.2 |
| ISHwa21 | IS200/IS605 | IS1341 | Haloquadratum walsbyi | 38 | 7.2 |
| ISHwa19 | IS200/IS605 | IS1341 | Haloquadratum walsbyi | 38 | 7.2 |
| ISNph26 | IS200/IS605 | IS1341 | Natronomonas pharaonis | 38 | 7.2 |
| ISNpe27 | IS200/IS605 | IS1341 | Natrinema pellirubrum | 38 | 7.2 |
| TnAs2 | Tn3 | Aeromonas salmonicida | 38 | 7.2 | |
| TnShfr1 | Tn3 | Shewanella frigidimarina | 38 | 7.2 | |
| ISHbo4 | IS200/IS605 | IS605 | Halogeometricum borinquense | 38 | 7.2 |
| ISNpe18 | IS5 | Natrinema pellirubrum | 38 | 7.2 | |
| ISTni1 | ISKra4 | ISKra4 | Thioalkalivibrio nitratireducens | 38 | 7.2 |
| ISFsp17 | ISKra4 | ISKra4 | Frankia sp. | 38 | 7.2 |
| ISSusp4 | ISKra4 | ISAzba1 | Sulfitobacter sp. | 38 | 7.2 |
| ISMtu1 | IS256 | Mycobacterium tusciae | 38 | 7.2 | |
| ISBlo17 | IS256 | IS1249 | Bifidobacterium longum | 38 | 7.2 |
| ISEle1 | IS256 | IS1249 | Eggerthella lenta | 38 | 7.2 |
| ISSaci1 | ISAzo13 | Streptomyces acidiscabies | 38 | 7.2 | |
| ISNamo4 | IS5 | Natronomonas moolapensis | 38 | 7.2 | |
| ISHme2 | IS4 | ISH8 | Haloferax mediterranei | 38 | 7.2 |
| ISNml4 | IS256 | Nakamurella multipartita | 38 | 7.2 | |
| ISHla6 | IS5 | Halorubrum lacusprofundi | 38 | 7.2 | |
| ISAzs19 | IS256 | Azospirillum sp. | 38 | 7.2 | |
| ISAzs11 | ISAs1 | Azospirillum sp. | 38 | 7.2 | |
| ISButh7 | IS5 | IS903 | Burkholderia thailandensis | 38 | 7.2 |
| ISGeob5 | IS5 | IS427 | Geodermatophilus obscurus | 38 | 7.2 |
| ISH30 | IS4 | ISH8 | Halobacterium salinarum | 38 | 7.2 |
| ISRle11 | IS1182 | Rhizobium leguminosarum | 38 | 7.2 | |
| ISHwa20 | IS5 | Haloquadratum walsbyi | 38 | 7.2 | |
| ISLru1 | IS5 | IS5 | Leptospirillum rubarum | 38 | 7.2 |
| ISXca5 | IS5 | IS5 | Xanthomonas campestris | 38 | 7.2 |
| ISRhsp1 | IS5 | IS5 | Rhodobacter sphaeroides | 38 | 7.2 |
| ISStsp1 | ISAzo13 | Streptomyces sp. | 38 | 7.2 | |
| ISFsp13 | ISAzo13 | Frankia sp. | 38 | 7.2 | |
| ISFsp12 | ISAzo13 | Frankia sp. | 38 | 7.2 | |
| ISMno36 | IS6 | Methylobacterium nodulans | 38 | 7.2 | |
| ISMtsp18 | IS3 | IS2 | Methylobacterium sp. | 38 | 7.2 |
| ISMtsp8 | IS21 | Methylobacterium sp. | 38 | 7.2 | |
| ISMch6 | IS110 | Methylobacterium chloromethanicum | 38 | 7.2 | |
| ISPfr15 | IS481 | Propionibacterium freudenreichii | 38 | 7.2 | |
| ISNml1 | IS1380 | Nakamurella multipartita | 38 | 7.2 | |
| ISMav7 | IS1380 | Mycobacterium avium | 38 | 7.2 | |
| ISFsp15 | IS1380 | Frankia sp. | 38 | 7.2 | |
| ISApr8 | IS1380 | alpha proteobacterium | 38 | 7.2 | |
| ISAar8 | IS1380 | Arthrobacter arilaitensis | 38 | 7.2 | |
| ISAzba7 | IS5 | IS427 | Azospirillum brasilense | 38 | 7.2 |
| ISAnsp11 | IS3 | IS3 | Anaeromyxobacter sp. | 38 | 7.2 |
| ISStma11 | ISL3 | Stenotrophomonas maltophilia | 38 | 7.2 | |
| ISMex7 | IS3 | IS150 | Methylobacterium extorquens | 38 | 7.2 |
| ISThsp18 | IS1182 | Thiomonas sp. | 38 | 7.2 | |
| ISCARN112 | ISNCY | IS1202 | Metagenomic data from CARNOULES | 38 | 7.2 |
| ISCARN52 | IS110 | Metagenomic data from CARNOULES | 38 | 7.2 | |
| ISCARN32 | IS110 | IS1111 | Metagenomic data from CARNOULES | 38 | 7.2 |
| ISThsp3 | IS66 | Thiomonas sp. | 38 | 7.2 | |
| ISRhsp5 | IS66 | Rhodobacter sphaeroides | 38 | 7.2 | |
| ISMlu1 | IS256 | Micrococcus luteus | 38 | 7.2 | |
| ISAli18 | ISL3 | Azospirillum lipoferum | 38 | 7.2 | |
| ISFpe1 | IS66 | Fulvimarina pelagi | 38 | 7.2 | |
| ISAli13 | IS21 | Azospirillum lipoferum | 38 | 7.2 | |
| ISMxa3 | IS66 | ISBst12 | Myxococcus xanthus | 38 | 7.2 |
| ISFsp10 | IS66 | ISBst12 | Frankia sp. | 38 | 7.2 |
| ISSba6 | IS4 | IS4 | Shewanella baltica | 38 | 7.2 |
| ISRel3 | IS21 | Rhizobium etli | 38 | 7.2 | |
| ISRme15 | IS3 | IS51 | Ralstonia metallidurans | 38 | 7.2 |
| ISNwi5 | IS481 | Nitrobacter winogradskyi | 38 | 7.2 | |
| ISAusp1 | IS1595 | ISNha5 | Aurantimonas sp. | 38 | 7.2 |
| ISRhosp3 | IS701 | Rhodococcus sp. | 38 | 7.2 | |
| ISRhosp4 | IS701 | Rhodococcus sp. | 38 | 7.2 | |
| ISBmu11 | IS3 | IS150 | Burkholderia multivorans | 38 | 7.2 |
| ISGvi5 | IS3 | IS3 | Gloeobacter violaceus | 38 | 7.2 |
| ISOcsp1 | IS21 | Ochrobactrum sp. | 38 | 7.2 | |
| ISCef3 | IS982 | Corynebacterium efficiens | 38 | 7.2 | |
| ISFsp4 | IS200/IS605 | Frankia sp. | 38 | 7.2 | |
| ISBcen18 | IS256 | Burkholderia cenocepacia | 38 | 7.2 | |
| ISTfu1 | IS200/IS605 | Thermobifida fusca | 38 | 7.2 | |
| ISXax1 | IS256 | Xanthomonas axonopodis | 38 | 7.2 | |
| ISMyca1 | IS1634 | Mycobacterium canettii | 38 | 7.2 | |
| ISCc1 | IS5 | IS427 | Caulobacter crescentus | 38 | 7.2 |
| ISBcen2 | IS110 | IS1111 | Burkholderia cenocepacia | 38 | 7.2 |
| ISBlo4 | IS30 | Bifidobacterium longum | 38 | 7.2 | |
| ISMt3 | IS21 | - | Mycobacterium tuberculosis | 38 | 7.2 |
| ISMbo1 | IS21 | - | Mycobacterium bovis | 38 | 7.2 |
| IS1648 | IS5 | IS427 | Streptomyces coelicolor | 38 | 7.2 |
| IS1354 | IS256 | - | Methylobacterium dichloromethanicum | 38 | 7.2 |
| IS1294 | IS91 | - | Escherichia coli | 38 | 7.2 |
| IS1247 | IS1380 | - | Xanthobacter autotrophicus | 38 | 7.2 |
| IS1240 | IS3 | IS3 | Pseudomonas syringae | 38 | 7.2 |
>ISArsp6
Length = 26712
Score = 67.9 bits (34), Expect = 8e-09
Identities = 46/50 (92%)
Strand = Plus / Plus
Query: 87026 tgggccgtgcccttcggcatcgtcggcggtcggctctaccacgtcatcac 87075
|||||||| |||||||||||||||||||| ||||||||||| || |||||
Sbjct: 11442 tgggccgtccccttcggcatcgtcggcggccggctctaccatgtgatcac 11491
Score = 61.9 bits (31), Expect = 5e-07
Identities = 55/63 (87%)
Strand = Plus / Plus
Query: 87281 aactggttcaacaacgagctctacggcgctccgacggacgtgccctggaagctgcagatc 87340
||||||||||||||||| |||||||||| || |||||| |||| ||||| ||||| |||
Sbjct: 11697 aactggttcaacaacgaaatctacggcgcacccacggacctgccatggaaactgcaaatc 11756
Query: 87341 cac 87343
|||
Sbjct: 11757 cac 11759
Score = 38.2 bits (19), Expect = 7.2
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 164024 cgcggtggcgccgccgcgg 164042
|||||||||||||||||||
Sbjct: 6919 cgcggtggcgccgccgcgg 6901
Score = 38.2 bits (19), Expect = 7.2
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 243595 cgacggcctcttcgacgtc 243613
|||||||||||||||||||
Sbjct: 20922 cgacggcctcttcgacgtc 20904
Score = 38.2 bits (19), Expect = 7.2
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 75571 cgcggtcacggtgccggtc 75589
|||||||||||||||||||
Sbjct: 26202 cgcggtcacggtgccggtc 26184
>ISFsp11
Length = 1836
Score = 50.1 bits (25), Expect = 0.002
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 88310 gcggcggccaaggcgcggatcgaggagctcgccgtcg 88346
||||| ||| |||||||||||||||| ||||||||||
Sbjct: 151 gcggctgccgaggcgcggatcgaggaactcgccgtcg 187
>ISBsp5
Length = 1744
Score = 46.1 bits (23), Expect = 0.029
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 305275 gccatcgagaatgaacttctcga 305297
|||||||||||||||||||||||
Sbjct: 1702 gccatcgagaatgaacttctcga 1724
>ISH3C
Length = 1389
Score = 46.1 bits (23), Expect = 0.029
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 170770 tcgagccggaacggctcgaacgc 170792
|||||||||||||||||||||||
Sbjct: 289 tcgagccggaacggctcgaacgc 311
>ISH27-2
Length = 1389
Score = 46.1 bits (23), Expect = 0.029
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 170770 tcgagccggaacggctcgaacgc 170792
|||||||||||||||||||||||
Sbjct: 289 tcgagccggaacggctcgaacgc 311
>ISPa43
Length = 19903
Score = 44.1 bits (22), Expect = 0.12
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 142607 cctggacgcggtgctggcggcc 142628
||||||||||||||||||||||
Sbjct: 7747 cctggacgcggtgctggcggcc 7768
Score = 42.1 bits (21), Expect = 0.46
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 28128 agttctcgggcggcatgcggcagcg 28152
|||||||||||||||||| ||||||
Sbjct: 10997 agttctcgggcggcatgcagcagcg 11021
>ISAzs36
Length = 2622
Score = 44.1 bits (22), Expect = 0.12
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 186744 tgacgccgaactggtcggccagggag 186769
|||||| |||||||||||||||||||
Sbjct: 2522 tgacgctgaactggtcggccagggag 2497
>ISHla5
Length = 1397
Score = 44.1 bits (22), Expect = 0.12
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 170770 tcgagccggaacggctcgaacg 170791
||||||||||||||||||||||
Sbjct: 289 tcgagccggaacggctcgaacg 310
>ISHla1
Length = 1399
Score = 44.1 bits (22), Expect = 0.12
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 170770 tcgagccggaacggctcgaacg 170791
||||||||||||||||||||||
Sbjct: 289 tcgagccggaacggctcgaacg 310
>ISSav7
Length = 2992
Score = 44.1 bits (22), Expect = 0.12
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 239644 gctgcgcgccgccctccccgcctacgccga 239673
|||||||||||||||||||| | |||||||
Sbjct: 296 gctgcgcgccgccctccccgacgacgccga 267
Score = 38.2 bits (19), Expect = 7.2
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 215536 acccggtcgaggagctgcgccgc 215558
||||||| |||||||||||||||
Sbjct: 669 acccggtggaggagctgcgccgc 647
>ISXac2
Length = 1195
Score = 44.1 bits (22), Expect = 0.12
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 227322 ggcatccgggtcgagcacatcc 227343
||||||||||||||||||||||
Sbjct: 933 ggcatccgggtcgagcacatcc 954
>ISBj3
Length = 1284
Score = 42.1 bits (21), Expect = 0.46
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 212196 gccacgacagcacccggcggc 212216
|||||||||||||||||||||
Sbjct: 837 gccacgacagcacccggcggc 817
>ISPa40
Length = 6592
Score = 42.1 bits (21), Expect = 0.46
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 192605 cagacggcgcagatcgtcgag 192625
|||||||||||||||||||||
Sbjct: 3256 cagacggcgcagatcgtcgag 3236
>ISAzs24
Length = 1325
Score = 42.1 bits (21), Expect = 0.46
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 274395 gccttgatccgctcctgctcg 274415
|||||||||||||||||||||
Sbjct: 280 gccttgatccgctcctgctcg 260
>ISVsp4
Length = 2518
Score = 42.1 bits (21), Expect = 0.46
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 220545 caggagcaggccgcccggctc 220565
|||||||||||||||||||||
Sbjct: 1160 caggagcaggccgcccggctc 1180
>ISBxe5
Length = 1335
Score = 42.1 bits (21), Expect = 0.46
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 168167 gcgcatggacccggtgttcgc 168187
|||||||||||||||||||||
Sbjct: 206 gcgcatggacccggtgttcgc 226
>ISPfr16
Length = 1234
Score = 42.1 bits (21), Expect = 0.46
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 75702 aggtcaaggccgcgatgcgcgccgc 75726
||||| |||||||||||||||||||
Sbjct: 884 aggtcgaggccgcgatgcgcgccgc 908
>ISAnsp12
Length = 2926
Score = 42.1 bits (21), Expect = 0.46
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 86353 tcgcggcggccggcggcgacg 86373
|||||||||||||||||||||
Sbjct: 348 tcgcggcggccggcggcgacg 368
>ISMdi18
Length = 3479
Score = 42.1 bits (21), Expect = 0.46
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 23712 gtcgagcgggccgagcgggcg 23732
|||||||||||||||||||||
Sbjct: 916 gtcgagcgggccgagcgggcg 936
>ISMex10
Length = 1754
Score = 42.1 bits (21), Expect = 0.46
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 87689 ctcgacgccgacgccgcagcggtgg 87713
|||||||||||||||||||| ||||
Sbjct: 1363 ctcgacgccgacgccgcagcagtgg 1387
Score = 38.2 bits (19), Expect = 7.2
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 319004 gcgttcgaggtcgacgacg 319022
|||||||||||||||||||
Sbjct: 606 gcgttcgaggtcgacgacg 588
>ISAav5
Length = 1023
Score = 42.1 bits (21), Expect = 0.46
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 157732 gcgctggcggcgctgctgttc 157752
|||||||||||||||||||||
Sbjct: 338 gcgctggcggcgctgctgttc 318
>ISAisp3
Length = 1023
Score = 42.1 bits (21), Expect = 0.46
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 157732 gcgctggcggcgctgctgttc 157752
|||||||||||||||||||||
Sbjct: 338 gcgctggcggcgctgctgttc 318
>IS1372
Length = 1304
Score = 42.1 bits (21), Expect = 0.46
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 99125 cggacgaggccgaccaggtga 99145
|||||||||||||||||||||
Sbjct: 364 cggacgaggccgaccaggtga 384
>ISTha3
Length = 2424
Score = 40.1 bits (20), Expect = 1.8
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 312229 cgaccggctcgatggcgcgc 312248
||||||||||||||||||||
Sbjct: 2192 cgaccggctcgatggcgcgc 2173
Score = 38.2 bits (19), Expect = 7.2
Identities = 31/35 (88%)
Strand = Plus / Plus
Query: 307840 agcaggtgggtggcgaacgagtgacgcagcgtgtg 307874
||||| ||||||||||| | ||| |||||||||||
Sbjct: 1602 agcagatgggtggcgaaggcgtggcgcagcgtgtg 1636
>ISMyo1
Length = 1472
Score = 40.1 bits (20), Expect = 1.8
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 125427 cgcacctgcccgccaaggac 125446
||||||||||||||||||||
Sbjct: 968 cgcacctgcccgccaaggac 987
>ISAzs20
Length = 2811
Score = 40.1 bits (20), Expect = 1.8
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 255090 cgagcgcttcgccaaggagg 255109
||||||||||||||||||||
Sbjct: 1540 cgagcgcttcgccaaggagg 1559
>ISBam3
Length = 1133
Score = 40.1 bits (20), Expect = 1.8
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 80131 tgcgcgagctggctttcgcc 80150
||||||||||||||||||||
Sbjct: 382 tgcgcgagctggctttcgcc 401
Score = 38.2 bits (19), Expect = 7.2
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 216094 acaacgccggcctgatcaa 216112
|||||||||||||||||||
Sbjct: 190 acaacgccggcctgatcaa 208
>ISHwa4
Length = 1285
Score = 40.1 bits (20), Expect = 1.8
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 319493 gacgaggacgaggaagacga 319512
||||||||||||||||||||
Sbjct: 509 gacgaggacgaggaagacga 528
>ISBusp3
Length = 1349
Score = 40.1 bits (20), Expect = 1.8
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 58816 cgctgccgccctggcgggcg 58835
||||||||||||||||||||
Sbjct: 965 cgctgccgccctggcgggcg 946
>ISMno17
Length = 1534
Score = 40.1 bits (20), Expect = 1.8
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 127912 cccagcggctgcggatgcgc 127931
||||||||||||||||||||
Sbjct: 1106 cccagcggctgcggatgcgc 1125
>ISPfr8
Length = 1436
Score = 40.1 bits (20), Expect = 1.8
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 113452 ggcgagcccagctggcccac 113471
||||||||||||||||||||
Sbjct: 1150 ggcgagcccagctggcccac 1169
>ISMsm10
Length = 1661
Score = 40.1 bits (20), Expect = 1.8
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 143367 gaccctggccaggcagaccgggct 143390
|||||||||||| |||||||||||
Sbjct: 207 gaccctggccagccagaccgggct 230
>ISBli4
Length = 1713
Score = 40.1 bits (20), Expect = 1.8
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 207062 gatcgcggcgatcgcgacccaggc 207085
|||||| |||||||||||||||||
Sbjct: 1323 gatcgctgcgatcgcgacccaggc 1300
>ISCc5
Length = 1577
Score = 40.1 bits (20), Expect = 1.8
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 331055 tccaggtcgtcgacgaagac 331074
||||||||||||||||||||
Sbjct: 190 tccaggtcgtcgacgaagac 171
>ISAnsp9
Length = 1704
Score = 40.1 bits (20), Expect = 1.8
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 281406 tcggcgaagggggtgtcgagcgtg 281429
|||||||||| |||||||||||||
Sbjct: 1293 tcggcgaaggcggtgtcgagcgtg 1270
>ISMex32
Length = 861
Score = 40.1 bits (20), Expect = 1.8
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 206141 tcgacgacccagcggtgacg 206160
||||||||||||||||||||
Sbjct: 722 tcgacgacccagcggtgacg 703
>ISMex38
Length = 3841
Score = 40.1 bits (20), Expect = 1.8
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 83289 cacggtcgagccggcactgg 83308
||||||||||||||||||||
Sbjct: 1023 cacggtcgagccggcactgg 1042
Score = 38.2 bits (19), Expect = 7.2
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 232470 ggcgagccccgcgcgctcg 232488
|||||||||||||||||||
Sbjct: 1320 ggcgagccccgcgcgctcg 1302
>ISAnsp4
Length = 2195
Score = 40.1 bits (20), Expect = 1.8
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 152891 gccgcgagcaggtccgcgac 152910
||||||||||||||||||||
Sbjct: 376 gccgcgagcaggtccgcgac 357
Score = 40.1 bits (20), Expect = 1.8
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 323239 gtcttgccgaggcccggcgggccg 323262
|||||||||| |||||||||||||
Sbjct: 1704 gtcttgccgacgcccggcgggccg 1681
Score = 38.2 bits (19), Expect = 7.2
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 291799 gccggcctcgacggcggcg 291817
|||||||||||||||||||
Sbjct: 1747 gccggcctcgacggcggcg 1729
>ISSav5
Length = 1953
Score = 40.1 bits (20), Expect = 1.8
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 19019 gaagccgtccgaccggaccgcctc 19042
||||||||||| ||||||||||||
Sbjct: 1625 gaagccgtccggccggaccgcctc 1648
Score = 38.2 bits (19), Expect = 7.2
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 82304 cgcccacctggccgaggac 82322
|||||||||||||||||||
Sbjct: 1767 cgcccacctggccgaggac 1785
>ISCARN40
Length = 1264
Score = 40.1 bits (20), Expect = 1.8
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 298615 gcgcaaccgcggggtgcagg 298634
||||||||||||||||||||
Sbjct: 745 gcgcaaccgcggggtgcagg 764
>ISBj7_B
Length = 2865
Score = 40.1 bits (20), Expect = 1.8
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 155155 cggagccggtggcgacgagg 155174
||||||||||||||||||||
Sbjct: 2580 cggagccggtggcgacgagg 2561
>ISAli10
Length = 2584
Score = 40.1 bits (20), Expect = 1.8
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 41660 cctgctcggccgccagctcg 41679
||||||||||||||||||||
Sbjct: 1211 cctgctcggccgccagctcg 1192
>ISBlma9
Length = 2606
Score = 40.1 bits (20), Expect = 1.8
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 308034 gtcgaccgcctcgacggcga 308053
||||||||||||||||||||
Sbjct: 490 gtcgaccgcctcgacggcga 471
>ISAeh1
Length = 2320
Score = 40.1 bits (20), Expect = 1.8
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 12493 tcgtccaggaggcgatggcg 12512
||||||||||||||||||||
Sbjct: 375 tcgtccaggaggcgatggcg 394
>ISBusp2
Length = 1349
Score = 40.1 bits (20), Expect = 1.8
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 58816 cgctgccgccctggcgggcg 58835
||||||||||||||||||||
Sbjct: 965 cgctgccgccctggcgggcg 946
>ISCausp2
Length = 7915
Score = 40.1 bits (20), Expect = 1.8
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 81877 aggaggcgtgggccgacgccgtcg 81900
||||||||| ||||||||||||||
Sbjct: 4406 aggaggcgttggccgacgccgtcg 4429
Score = 38.2 bits (19), Expect = 7.2
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 226477 tcgccggccagatcgagca 226495
|||||||||||||||||||
Sbjct: 144 tcgccggccagatcgagca 162
>ISRssp2
Length = 4633
Score = 40.1 bits (20), Expect = 1.8
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 92507 tgggaccggatcatggaggc 92526
||||||||||||||||||||
Sbjct: 4052 tgggaccggatcatggaggc 4071
>ISSsp2
Length = 1511
Score = 40.1 bits (20), Expect = 1.8
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 162668 cggcgggcgtcacgttgttc 162687
||||||||||||||||||||
Sbjct: 1333 cggcgggcgtcacgttgttc 1314
>ISAav4
Length = 1308
Score = 40.1 bits (20), Expect = 1.8
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 294581 cgaccagccgacgatgcgcc 294600
||||||||||||||||||||
Sbjct: 844 cgaccagccgacgatgcgcc 825
>ISBvi3
Length = 1282
Score = 40.1 bits (20), Expect = 1.8
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 294581 cgaccagccgacgatgcgcc 294600
||||||||||||||||||||
Sbjct: 871 cgaccagccgacgatgcgcc 852
>ISMca3
Length = 1320
Score = 40.1 bits (20), Expect = 1.8
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 221966 ctcgatggccgcccacagcg 221985
||||||||||||||||||||
Sbjct: 154 ctcgatggccgcccacagcg 135
>ISMmg2
Length = 1380
Score = 40.1 bits (20), Expect = 1.8
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 261355 gccgagctgccagttcgagc 261374
||||||||||||||||||||
Sbjct: 584 gccgagctgccagttcgagc 565
>ISMmg1
Length = 1359
Score = 40.1 bits (20), Expect = 1.8
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 323321 cgagctggtcgcggacccgg 323340
||||||||||||||||||||
Sbjct: 463 cgagctggtcgcggacccgg 444
>ISMk1
Length = 947
Score = 40.1 bits (20), Expect = 1.8
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 254171 gccgcctggcccgccacgcc 254190
||||||||||||||||||||
Sbjct: 275 gccgcctggcccgccacgcc 256
>ISMav1
Length = 2536
Score = 40.1 bits (20), Expect = 1.8
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 216508 gatcgcggccgagcacgagctcgt 216531
||||| ||||||||||||||||||
Sbjct: 1236 gatcgtggccgagcacgagctcgt 1259
Score = 38.2 bits (19), Expect = 7.2
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 295258 tgacgagctcgtgctcggc 295276
|||||||||||||||||||
Sbjct: 1261 tgacgagctcgtgctcggc 1243
>ISPa45
Length = 1637
Score = 40.1 bits (20), Expect = 1.8
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 216662 ctgctgcaacgggtcatcgagcag 216685
|||||||||| |||||||||||||
Sbjct: 1146 ctgctgcaaccggtcatcgagcag 1169
>IS1612
Length = 2532
Score = 40.1 bits (20), Expect = 1.8
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 216508 gatcgcggccgagcacgagctcgt 216531
||||| ||||||||||||||||||
Sbjct: 1235 gatcgtggccgagcacgagctcgt 1258
Score = 38.2 bits (19), Expect = 7.2
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 295258 tgacgagctcgtgctcggc 295276
|||||||||||||||||||
Sbjct: 1260 tgacgagctcgtgctcggc 1242
>ISSbo1
Length = 1709
Score = 38.2 bits (19), Expect = 7.2
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 254204 tctccatcgccagacggcacacg 254226
|||||| ||||||||||||||||
Sbjct: 981 tctccaccgccagacggcacacg 1003
>ISSna1
Length = 1560
Score = 38.2 bits (19), Expect = 7.2
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 7755 ccagctcaccgaccaggtg 7773
|||||||||||||||||||
Sbjct: 886 ccagctcaccgaccaggtg 868
>TnXo19
Length = 18767
Score = 38.2 bits (19), Expect = 7.2
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 67125 cagcttctacggcctgttcgtcg 67147
||||||| |||||||||||||||
Sbjct: 8933 cagcttccacggcctgttcgtcg 8955
>ISHel2
Length = 1975
Score = 38.2 bits (19), Expect = 7.2
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 312854 cggtcgtcggcgtggatgt 312872
|||||||||||||||||||
Sbjct: 1220 cggtcgtcggcgtggatgt 1238
>ISNje1
Length = 1597
Score = 38.2 bits (19), Expect = 7.2
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 133216 tcggtctcgtcgggcaggtggcg 133238
||||| |||||||||||||||||
Sbjct: 741 tcggtgtcgtcgggcaggtggcg 719
>ISRsp12
Length = 3701
Score = 38.2 bits (19), Expect = 7.2
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 288696 gcccggcccggtctcgacc 288714
|||||||||||||||||||
Sbjct: 482 gcccggcccggtctcgacc 464
>ISMno21
Length = 1162
Score = 38.2 bits (19), Expect = 7.2
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 90277 gctcggcggggtcgggctg 90295
|||||||||||||||||||
Sbjct: 237 gctcggcggggtcgggctg 255
>ISHwa23
Length = 1496
Score = 38.2 bits (19), Expect = 7.2
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 132082 gtcctcgtaggcgagcgcg 132100
|||||||||||||||||||
Sbjct: 796 gtcctcgtaggcgagcgcg 778
>ISHwa21
Length = 1590
Score = 38.2 bits (19), Expect = 7.2
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 146649 cgacggggacggcgacggcgacg 146671
|||||| ||||||||||||||||
Sbjct: 1290 cgacggcgacggcgacggcgacg 1312
Score = 38.2 bits (19), Expect = 7.2
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 146649 cgacggggacggcgacggcgacg 146671
|||||| ||||||||||||||||
Sbjct: 1296 cgacggcgacggcgacggcgacg 1318
Score = 38.2 bits (19), Expect = 7.2
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 146649 cgacggggacggcgacggcgacg 146671
|||||| ||||||||||||||||
Sbjct: 1302 cgacggcgacggcgacggcgacg 1324
Score = 38.2 bits (19), Expect = 7.2
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 146649 cgacggggacggcgacggcgacg 146671
|||||| ||||||||||||||||
Sbjct: 1308 cgacggcgacggcgacggcgacg 1330
>ISHwa19
Length = 1482
Score = 38.2 bits (19), Expect = 7.2
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 133365 ggtcgtactcctcggacag 133383
|||||||||||||||||||
Sbjct: 893 ggtcgtactcctcggacag 875
>ISNph26
Length = 1611
Score = 38.2 bits (19), Expect = 7.2
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 19603 agaggtcgtggcggatgaa 19621
|||||||||||||||||||
Sbjct: 597 agaggtcgtggcggatgaa 579
>ISNpe27
Length = 1420
Score = 38.2 bits (19), Expect = 7.2
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 67869 cggctcacggttcgcccgg 67887
|||||||||||||||||||
Sbjct: 885 cggctcacggttcgcccgg 903
>TnAs2
Length = 8650
Score = 38.2 bits (19), Expect = 7.2
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 79623 gccgccgccatcgccgcgc 79641
|||||||||||||||||||
Sbjct: 2008 gccgccgccatcgccgcgc 1990
>TnShfr1
Length = 5131
Score = 38.2 bits (19), Expect = 7.2
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 60918 atggcggcggccaacgacc 60936
|||||||||||||||||||
Sbjct: 3725 atggcggcggccaacgacc 3743
>ISHbo4
Length = 1835
Score = 38.2 bits (19), Expect = 7.2
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 32281 cctctccaagctcaaggag 32299
|||||||||||||||||||
Sbjct: 842 cctctccaagctcaaggag 860
>ISNpe18
Length = 1070
Score = 38.2 bits (19), Expect = 7.2
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 152916 ccgcctcgtcgagcaggcc 152934
|||||||||||||||||||
Sbjct: 400 ccgcctcgtcgagcaggcc 418
>ISTni1
Length = 2377
Score = 38.2 bits (19), Expect = 7.2
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 209321 ccggccttcggggaagcag 209339
|||||||||||||||||||
Sbjct: 1921 ccggccttcggggaagcag 1903
>ISFsp17
Length = 1693
Score = 38.2 bits (19), Expect = 7.2
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 85396 caggtcctcgacctcgtcg 85414
|||||||||||||||||||
Sbjct: 277 caggtcctcgacctcgtcg 259
>ISSusp4
Length = 1443
Score = 38.2 bits (19), Expect = 7.2
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 219591 catcgtctcggccgcctat 219609
|||||||||||||||||||
Sbjct: 117 catcgtctcggccgcctat 135
>ISMtu1
Length = 1474
Score = 38.2 bits (19), Expect = 7.2
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 164094 ggcgaggcggccgtcgaggccga 164116
||||||||||||||||| |||||
Sbjct: 1176 ggcgaggcggccgtcgatgccga 1154
>ISBlo17
Length = 1352
Score = 38.2 bits (19), Expect = 7.2
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 311618 ggactcgagcccctcgtcgagga 311640
|||| ||||||||||||||||||
Sbjct: 994 ggacgcgagcccctcgtcgagga 972
>ISEle1
Length = 1334
Score = 38.2 bits (19), Expect = 7.2
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 210966 atgagcgccgcccacgcccgcgc 210988
|||||||||||||||||| ||||
Sbjct: 583 atgagcgccgcccacgcctgcgc 561
>ISSaci1
Length = 1747
Score = 38.2 bits (19), Expect = 7.2
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 181360 cggtcagggcgccgaccgggacc 181382
|||| ||||||||||||||||||
Sbjct: 1653 cggtgagggcgccgaccgggacc 1631
>ISNamo4
Length = 1069
Score = 38.2 bits (19), Expect = 7.2
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 206963 gtagccgtagtagtactcg 206981
|||||||||||||||||||
Sbjct: 541 gtagccgtagtagtactcg 523
>ISHme2
Length = 1403
Score = 38.2 bits (19), Expect = 7.2
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 140679 aggccgtgctcgacgagct 140697
|||||||||||||||||||
Sbjct: 384 aggccgtgctcgacgagct 366
>ISNml4
Length = 1462
Score = 38.2 bits (19), Expect = 7.2
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 151787 gccgcggttggccaggtcg 151805
|||||||||||||||||||
Sbjct: 808 gccgcggttggccaggtcg 790
>ISHla6
Length = 1069
Score = 38.2 bits (19), Expect = 7.2
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 152916 ccgcctcgtcgagcaggcc 152934
|||||||||||||||||||
Sbjct: 400 ccgcctcgtcgagcaggcc 418
>ISAzs19
Length = 1322
Score = 38.2 bits (19), Expect = 7.2
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 25876 ccgcaaggccatcgcggtcgcct 25898
||||||||||||||||| |||||
Sbjct: 868 ccgcaaggccatcgcgggcgcct 890
>ISAzs11
Length = 1224
Score = 38.2 bits (19), Expect = 7.2
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 257425 gccctgctcgccatggtcg 257443
|||||||||||||||||||
Sbjct: 689 gccctgctcgccatggtcg 707
>ISButh7
Length = 1128
Score = 38.2 bits (19), Expect = 7.2
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 216094 acaacgccggcctgatcaa 216112
|||||||||||||||||||
Sbjct: 184 acaacgccggcctgatcaa 202
>ISGeob5
Length = 903
Score = 38.2 bits (19), Expect = 7.2
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 206141 tcgacgacccagcggtgacggcc 206163
|||||||||||||| ||||||||
Sbjct: 761 tcgacgacccagcgatgacggcc 739
>ISH30
Length = 1654
Score = 38.2 bits (19), Expect = 7.2
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 40732 tcgtcgaggacgtcctgca 40750
|||||||||||||||||||
Sbjct: 832 tcgtcgaggacgtcctgca 814
>ISRle11
Length = 1527
Score = 38.2 bits (19), Expect = 7.2
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 299839 cctcgaagccgaactgctcacgc 299861
|||||||||||||| ||||||||
Sbjct: 861 cctcgaagccgaaccgctcacgc 839
>ISHwa20
Length = 1075
Score = 38.2 bits (19), Expect = 7.2
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 206963 gtagccgtagtagtactcg 206981
|||||||||||||||||||
Sbjct: 541 gtagccgtagtagtactcg 523
>ISLru1
Length = 1608
Score = 38.2 bits (19), Expect = 7.2
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 272017 gtccgtcgggtaggcgatg 272035
|||||||||||||||||||
Sbjct: 577 gtccgtcgggtaggcgatg 559
>ISXca5
Length = 1514
Score = 38.2 bits (19), Expect = 7.2
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 72369 gacggcgacacgctggccg 72387
|||||||||||||||||||
Sbjct: 1074 gacggcgacacgctggccg 1092
>ISRhsp1
Length = 1486
Score = 38.2 bits (19), Expect = 7.2
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 311466 ccacccgagcagaacgacc 311484
|||||||||||||||||||
Sbjct: 138 ccacccgagcagaacgacc 156
>ISStsp1
Length = 1694
Score = 38.2 bits (19), Expect = 7.2
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 283150 ggtggccaggacctggtcg 283168
|||||||||||||||||||
Sbjct: 1458 ggtggccaggacctggtcg 1440
>ISFsp13
Length = 1724
Score = 38.2 bits (19), Expect = 7.2
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 255688 ctcgacgccggcgtcccgg 255706
|||||||||||||||||||
Sbjct: 1278 ctcgacgccggcgtcccgg 1296
>ISFsp12
Length = 1730
Score = 38.2 bits (19), Expect = 7.2
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 255688 ctcgacgccggcgtcccgg 255706
|||||||||||||||||||
Sbjct: 1278 ctcgacgccggcgtcccgg 1296
>ISMno36
Length = 888
Score = 38.2 bits (19), Expect = 7.2
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 226024 agcaggaggtcgaccggctcgcc 226046
||||||| |||||||||||||||
Sbjct: 434 agcaggaagtcgaccggctcgcc 412
>ISMtsp18
Length = 1341
Score = 38.2 bits (19), Expect = 7.2
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 245083 tgctgccgaccttccgcgagatcgtcg 245109
||||||| ||| |||||||||||||||
Sbjct: 588 tgctgcccaccatccgcgagatcgtcg 614
>ISMtsp8
Length = 2371
Score = 38.2 bits (19), Expect = 7.2
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 239004 cgtcggcgcggacgcccgc 239022
|||||||||||||||||||
Sbjct: 2250 cgtcggcgcggacgcccgc 2268
>ISMch6
Length = 1379
Score = 38.2 bits (19), Expect = 7.2
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 76745 acggtgcgccatcgcctca 76763
|||||||||||||||||||
Sbjct: 1124 acggtgcgccatcgcctca 1142
>ISPfr15
Length = 1097
Score = 38.2 bits (19), Expect = 7.2
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 169671 gccaggtcctcgacgacgc 169689
|||||||||||||||||||
Sbjct: 846 gccaggtcctcgacgacgc 864
>ISNml1
Length = 1636
Score = 38.2 bits (19), Expect = 7.2
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 58179 tcggtccggtcgcggccgt 58197
|||||||||||||||||||
Sbjct: 997 tcggtccggtcgcggccgt 979
>ISMav7
Length = 1691
Score = 38.2 bits (19), Expect = 7.2
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 6912 tcgaggccttcgcgacgaacacg 6934
|||||||||||||| ||||||||
Sbjct: 404 tcgaggccttcgcgccgaacacg 382
>ISFsp15
Length = 1695
Score = 38.2 bits (19), Expect = 7.2
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 311012 gagccggcactgatcgggccggtggcc 311038
|||||||||||| |||||| |||||||
Sbjct: 371 gagccggcactgttcgggctggtggcc 397
>ISApr8
Length = 1667
Score = 38.2 bits (19), Expect = 7.2
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 45050 cgcccggtcggtcgtcctc 45068
|||||||||||||||||||
Sbjct: 913 cgcccggtcggtcgtcctc 931
>ISAar8
Length = 1738
Score = 38.2 bits (19), Expect = 7.2
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 322725 gtcctcgccgtggacctgcgccc 322747
|||||||||||| ||||||||||
Sbjct: 695 gtcctcgccgtgcacctgcgccc 717
>ISAzba7
Length = 852
Score = 38.2 bits (19), Expect = 7.2
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 284422 ccggcgtggcgtcgagagc 284440
|||||||||||||||||||
Sbjct: 657 ccggcgtggcgtcgagagc 675
>ISAnsp11
Length = 1510
Score = 38.2 bits (19), Expect = 7.2
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 223863 cgcccgccgacggcgcgcc 223881
|||||||||||||||||||
Sbjct: 1409 cgcccgccgacggcgcgcc 1391
>ISStma11
Length = 4621
Score = 38.2 bits (19), Expect = 7.2
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 79623 gccgccgccatcgccgcgc 79641
|||||||||||||||||||
Sbjct: 2912 gccgccgccatcgccgcgc 2930
>ISMex7
Length = 1285
Score = 38.2 bits (19), Expect = 7.2
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 50916 ggcgagaagtcgatcgtcgagct 50938
||||||||| |||||||||||||
Sbjct: 154 ggcgagaagacgatcgtcgagct 176
Score = 38.2 bits (19), Expect = 7.2
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 205332 gtctatctcgccgccgtcg 205350
|||||||||||||||||||
Sbjct: 783 gtctatctcgccgccgtcg 801
>ISThsp18
Length = 1330
Score = 38.2 bits (19), Expect = 7.2
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 71725 ggcgaccgacccggagagcaggc 71747
|||||||||||| ||||||||||
Sbjct: 647 ggcgaccgaccccgagagcaggc 669
>ISCARN112
Length = 1468
Score = 38.2 bits (19), Expect = 7.2
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 124567 cgcgctgtccgtcgtgggc 124585
|||||||||||||||||||
Sbjct: 1386 cgcgctgtccgtcgtgggc 1368
>ISCARN52
Length = 1640
Score = 38.2 bits (19), Expect = 7.2
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 250443 gcggatccgctcgaccgaggcgg 250465
|||||||||| ||||||||||||
Sbjct: 264 gcggatccgcacgaccgaggcgg 286
>ISCARN32
Length = 1151
Score = 38.2 bits (19), Expect = 7.2
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 221045 cgagttcggcatcatgctg 221063
|||||||||||||||||||
Sbjct: 486 cgagttcggcatcatgctg 504
>ISThsp3
Length = 2455
Score = 38.2 bits (19), Expect = 7.2
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 215808 caccacctgcgccagcagg 215826
|||||||||||||||||||
Sbjct: 1442 caccacctgcgccagcagg 1424
>ISRhsp5
Length = 2528
Score = 38.2 bits (19), Expect = 7.2
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 137545 cgagaactgcgccggcgac 137563
|||||||||||||||||||
Sbjct: 778 cgagaactgcgccggcgac 760
>ISMlu1
Length = 1413
Score = 38.2 bits (19), Expect = 7.2
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 99510 cctggtcggggcggtgctg 99528
|||||||||||||||||||
Sbjct: 1211 cctggtcggggcggtgctg 1229
>ISAli18
Length = 1752
Score = 38.2 bits (19), Expect = 7.2
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 319004 gcgttcgaggtcgacgacg 319022
|||||||||||||||||||
Sbjct: 624 gcgttcgaggtcgacgacg 606
>ISFpe1
Length = 2489
Score = 38.2 bits (19), Expect = 7.2
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 137554 cgccggcgacggcacgatcaagatcga 137580
|||||| |||||||||||| |||||||
Sbjct: 2191 cgccggtgacggcacgatcgagatcga 2217
>ISAli13
Length = 2756
Score = 38.2 bits (19), Expect = 7.2
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 266656 cacgccgcccggtccggccggtt 266678
||||||||||| |||||||||||
Sbjct: 1665 cacgccgcccgatccggccggtt 1687
>ISMxa3
Length = 1926
Score = 38.2 bits (19), Expect = 7.2
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 214530 gcggagcggctgctcgagg 214548
|||||||||||||||||||
Sbjct: 1679 gcggagcggctgctcgagg 1661
>ISFsp10
Length = 1713
Score = 38.2 bits (19), Expect = 7.2
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 210905 cctcggcctgcccatcgacgtcc 210927
|||||||| ||||||||||||||
Sbjct: 379 cctcggccggcccatcgacgtcc 357
Score = 38.2 bits (19), Expect = 7.2
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 189263 ggccgtcgccctcatccgc 189281
|||||||||||||||||||
Sbjct: 1210 ggccgtcgccctcatccgc 1228
>ISSba6
Length = 1420
Score = 38.2 bits (19), Expect = 7.2
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 90612 tcagcgagatcgtcaagcg 90630
|||||||||||||||||||
Sbjct: 43 tcagcgagatcgtcaagcg 25
>ISRel3
Length = 2308
Score = 38.2 bits (19), Expect = 7.2
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 86064 atcggctacctgcccgtcg 86082
|||||||||||||||||||
Sbjct: 1908 atcggctacctgcccgtcg 1926
>ISRme15
Length = 1325
Score = 38.2 bits (19), Expect = 7.2
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 169631 gtggccttcgtcgtcgacg 169649
|||||||||||||||||||
Sbjct: 825 gtggccttcgtcgtcgacg 843
>ISNwi5
Length = 1003
Score = 38.2 bits (19), Expect = 7.2
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 286868 gcggaagtcgacgatgatcgcct 286890
||||||| |||||||||||||||
Sbjct: 284 gcggaaggcgacgatgatcgcct 262
>ISAusp1
Length = 3418
Score = 38.2 bits (19), Expect = 7.2
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 155400 gcggccaggtgctcgacgg 155418
|||||||||||||||||||
Sbjct: 3232 gcggccaggtgctcgacgg 3250
>ISRhosp3
Length = 1349
Score = 38.2 bits (19), Expect = 7.2
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 40265 tcgtcgcggaccccgtcga 40283
|||||||||||||||||||
Sbjct: 276 tcgtcgcggaccccgtcga 258
>ISRhosp4
Length = 1349
Score = 38.2 bits (19), Expect = 7.2
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 40265 tcgtcgcggaccccgtcga 40283
|||||||||||||||||||
Sbjct: 276 tcgtcgcggaccccgtcga 258
>ISBmu11
Length = 1626
Score = 38.2 bits (19), Expect = 7.2
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 184331 cgaggacgacgagacgccg 184349
|||||||||||||||||||
Sbjct: 1265 cgaggacgacgagacgccg 1283
>ISGvi5
Length = 1287
Score = 38.2 bits (19), Expect = 7.2
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 60927 gccaacgaccccgacgctc 60945
|||||||||||||||||||
Sbjct: 224 gccaacgaccccgacgctc 242
>ISOcsp1
Length = 1955
Score = 38.2 bits (19), Expect = 7.2
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 178173 ggtccctccggcgccggcaagac 178195
||||||||||||| |||||||||
Sbjct: 1436 ggtccctccggcgtcggcaagac 1458
>ISCef3
Length = 989
Score = 38.2 bits (19), Expect = 7.2
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 186738 cctcgatgacgccgaactg 186756
|||||||||||||||||||
Sbjct: 178 cctcgatgacgccgaactg 196
>ISFsp4
Length = 1784
Score = 38.2 bits (19), Expect = 7.2
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 238170 ttcgtcgtcgacctcgacgacgt 238192
|||||||||||| ||||||||||
Sbjct: 1001 ttcgtcgtcgacgtcgacgacgt 1023
>ISBcen18
Length = 1372
Score = 38.2 bits (19), Expect = 7.2
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 221063 ggtcgccgacgaggtgatggccg 221085
|||| ||||||||||||||||||
Sbjct: 532 ggtcaccgacgaggtgatggccg 554
>ISTfu1
Length = 1743
Score = 38.2 bits (19), Expect = 7.2
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 47969 ccgcgtgctgcgggaggag 47987
|||||||||||||||||||
Sbjct: 359 ccgcgtgctgcgggaggag 377
>ISXax1
Length = 1329
Score = 38.2 bits (19), Expect = 7.2
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 298616 cgcaaccgcggggtgcagg 298634
|||||||||||||||||||
Sbjct: 742 cgcaaccgcggggtgcagg 760
>ISMyca1
Length = 1968
Score = 38.2 bits (19), Expect = 7.2
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 132215 tcggcggtgccggccaccg 132233
|||||||||||||||||||
Sbjct: 414 tcggcggtgccggccaccg 396
>ISCc1
Length = 848
Score = 38.2 bits (19), Expect = 7.2
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 243238 cctgggcctgccggtccgc 243256
|||||||||||||||||||
Sbjct: 476 cctgggcctgccggtccgc 494
>ISBcen2
Length = 1363
Score = 38.2 bits (19), Expect = 7.2
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 222433 gcggcaccagcccgaccgccgcc 222455
|||||||||||||||||| ||||
Sbjct: 825 gcggcaccagcccgaccgacgcc 803
>ISBlo4
Length = 1399
Score = 38.2 bits (19), Expect = 7.2
Identities = 28/31 (90%)
Strand = Plus / Minus
Query: 325077 gtcgttgacctcctcggcgcccgcgtcgagg 325107
|||||||| ||||||||| |||||||||||
Sbjct: 1254 gtcgttgagttcctcggcgaccgcgtcgagg 1224
>ISMt3
Length = 2213
Score = 38.2 bits (19), Expect = 7.2
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 146259 cgacgtcgtcgccgccgaa 146277
|||||||||||||||||||
Sbjct: 2016 cgacgtcgtcgccgccgaa 1998
>ISMbo1
Length = 2212
Score = 38.2 bits (19), Expect = 7.2
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 146259 cgacgtcgtcgccgccgaa 146277
|||||||||||||||||||
Sbjct: 2015 cgacgtcgtcgccgccgaa 1997
>IS1648
Length = 969
Score = 38.2 bits (19), Expect = 7.2
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 290203 cccaggtgccgtccgcggaccag 290225
|||||||||||||||| ||||||
Sbjct: 286 cccaggtgccgtccgccgaccag 264
Score = 38.2 bits (19), Expect = 7.2
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 15473 gtcgaagccggcgggcctg 15491
|||||||||||||||||||
Sbjct: 794 gtcgaagccggcgggcctg 776
>IS1354
Length = 1431
Score = 38.2 bits (19), Expect = 7.2
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 69167 gccggacgcggtcgcggaccggc 69189
||||||||||||||| |||||||
Sbjct: 336 gccggacgcggtcgctgaccggc 358
>IS1294
Length = 1689
Score = 38.2 bits (19), Expect = 7.2
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 254204 tctccatcgccagacggcacacg 254226
|||||| ||||||||||||||||
Sbjct: 709 tctccaccgccagacggcacacg 687
>IS1247
Length = 1672
Score = 38.2 bits (19), Expect = 7.2
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 112258 gcccgaggccatggccgac 112276
|||||||||||||||||||
Sbjct: 1265 gcccgaggccatggccgac 1283
>IS1240
Length = 1668
Score = 38.2 bits (19), Expect = 7.2
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 72044 cgctgaccccttcgcgccg 72062
|||||||||||||||||||
Sbjct: 178 cgctgaccccttcgcgccg 160
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_4_length_307733_cov_70.3228_ID_5176
(307,733 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISMsm4 | ISL3 | Mycobacterium smegmatis | 84 | 1e-13 | |
| ISAli15 | IS66 | Azospirillum lipoferum | 50 | 0.002 | |
| IS204 | ISL3 | - | Nocardia asteroides | 48 | 0.007 |
| ISBlo4 | IS30 | Bifidobacterium longum | 46 | 0.027 | |
| ISMgi2 | IS1182 | Mycobacterium gilvum | 44 | 0.11 | |
| ISCARN22 | IS66 | Metagenomic data from CARNOULES | 44 | 0.11 | |
| ISMno24 | IS91 | Methylobacterium nodulans | 42 | 0.42 | |
| ISMno13 | IS66 | Methylobacterium nodulans | 42 | 0.42 | |
| ISMch6 | IS110 | Methylobacterium chloromethanicum | 42 | 0.42 | |
| ISMav8 | IS1380 | Mycobacterium avium | 42 | 0.42 | |
| ISRce1 | ISAs1 | Rhodospirillum centenum | 42 | 0.42 | |
| ISVei5 | IS5 | IS5 | Verminephrobacter eiseniae | 42 | 0.42 |
| ISThsp8 | IS1634 | Thiomonas sp. | 42 | 0.42 | |
| ISCARN23 | IS1634 | Metagenomic data from CARNOULES | 42 | 0.42 | |
| ISGur5 | IS3 | IS3 | Geobacter uraniireducens | 42 | 0.42 |
| TnAs3 | Tn3 | Aeromonas salmonicida | 40 | 1.7 | |
| ISGsi1 | IS256 | IS1249 | Gordonia sihwensis | 40 | 1.7 |
| ISAzs19 | IS256 | Azospirillum sp. | 40 | 1.7 | |
| ISSar1 | IS5 | ISL2 | Salinispora arenicola | 40 | 1.7 |
| ISNml3 | IS1182 | Nakamurella multipartita | 40 | 1.7 | |
| ISShes11 | Tn3 | Shewanella sp. | 40 | 1.7 | |
| ISVsp13 | IS3 | IS150 | Verrucomicrobium spinosum | 40 | 1.7 |
| ISRjo3 | ISNCY | ISDol1 | Rhodococcus jostii | 40 | 1.7 |
| ISPhae1 | IS5 | IS5 | Paracoccus haeundaensis | 40 | 1.7 |
| ISMno38 | IS1182 | Methylobacterium nodulans | 40 | 1.7 | |
| ISPfr11 | IS3 | IS3 | Propionibacterium freudenreichii | 40 | 1.7 |
| ISPfr4 | ISL3 | Propionibacterium freudenreichii | 40 | 1.7 | |
| ISPfr3 | ISL3 | Propionibacterium freudenreichii | 40 | 1.7 | |
| ISArsp6 | Tn3 | Arthrobacter sp. | 40 | 1.7 | |
| ISArsp5 | IS110 | Arthrobacter sp. | 40 | 1.7 | |
| ISStsp3 | IS1380 | Streptomyces sp. | 40 | 1.7 | |
| ISMdi5 | IS3 | IS3 | Methylobacterium dichloromethanicum | 40 | 1.7 |
| ISAzo17 | IS21 | Azoarcus sp. | 40 | 1.7 | |
| ISCARN36 | IS110 | IS1111 | Metagenomic data from CARNOULES | 40 | 1.7 |
| ISRhsp5 | IS66 | Rhodobacter sphaeroides | 40 | 1.7 | |
| ISAnsp1 | IS1182 | Anaeromyxobacter sp. | 40 | 1.7 | |
| ISSsp2 | IS3 | IS150 | Sphingomonas sp. | 40 | 1.7 |
| ISBcen28 | IS21 | Burkholderia cenocepacia | 40 | 1.7 | |
| ISRm16 | IS4 | IS4Sa | Sinorhizobium meliloti | 40 | 1.7 |
| ISScl1 | IS5 | IS1031 | Streptomyces clavuligerus | 40 | 1.7 |
| IS900 | IS110 | - | Mycobacterium paratuberculosis | 40 | 1.7 |
| IS1549 | IS1634 | - | Mycobacterium smegmatis | 40 | 1.7 |
| ISSna1 | ISNCY | ISDol1 | Streptomyces natalensis | 38 | 6.6 |
| ISHwa19 | IS200/IS605 | IS1341 | Haloquadratum walsbyi | 38 | 6.6 |
| ISHam1 | IS630 | Haloarcula amylolytica | 38 | 6.6 | |
| ISHhu3 | IS200/IS605 | Halobacterium hubeiense | 38 | 6.6 | |
| TnShfr1 | Tn3 | Shewanella frigidimarina | 38 | 6.6 | |
| ISBj11 | IS21 | Bradyrhizobium japonicum | 38 | 6.6 | |
| ISHli5 | ISH3 | Halohasta litchfieldiae | 38 | 6.6 | |
| ISTni1 | ISKra4 | ISKra4 | Thioalkalivibrio nitratireducens | 38 | 6.6 |
| ISFsp17 | ISKra4 | ISKra4 | Frankia sp. | 38 | 6.6 |
| ISHth1 | ISH6 | Halococcus thailandensis | 38 | 6.6 | |
| ISMva4 | IS256 | Mycobacterium vanbaalenii | 38 | 6.6 | |
| ISGpo1 | IS256 | Gordonia polyisoprenivorans | 38 | 6.6 | |
| ISPa38 | Tn3 | Pseudomonas aeruginosa | 38 | 6.6 | |
| ISAzs36 | IS481 | Azospirillum sp. | 38 | 6.6 | |
| ISAzs29 | Tn3 | Azospirillum sp. | 38 | 6.6 | |
| ISAzs24 | IS3 | IS51 | Azospirillum sp. | 38 | 6.6 |
| ISAzs18 | IS66 | Azospirillum sp. | 38 | 6.6 | |
| ISAzs17 | Tn3 | Azospirillum sp. | 38 | 6.6 | |
| ISAzs6 | IS701 | Azospirillum sp. | 38 | 6.6 | |
| ISStro2 | IS5 | ISL2 | Streptosporangium roseum | 38 | 6.6 |
| ISNph15 | IS200/IS605 | IS1341 | Natronomonas pharaonis | 38 | 6.6 |
| ISStsp8 | IS5 | ISL2 | Streptomyces sp. | 38 | 6.6 |
| ISGeob4 | IS5 | ISL2 | Geodermatophilus obscurus | 38 | 6.6 |
| ISFsp2 | IS5 | ISL2 | Frankia sp. | 38 | 6.6 |
| ISMgi3 | IS1182 | Mycobacterium gilvum | 38 | 6.6 | |
| ISGau7 | IS21 | Gemmatimonas aurantiaca | 38 | 6.6 | |
| ISPkr1 | IS21 | Paracoccus koreensis | 38 | 6.6 | |
| ISBusp3 | IS5 | Burkholderia sp. | 38 | 6.6 | |
| ISBj2_B | IS5 | IS5 | Bradyrhizobium japonicum | 38 | 6.6 |
| ISVbsp2 | IS5 | IS5 | Vibrio sp. | 38 | 6.6 |
| ISNha6 | IS5 | IS5 | Nitrobacter hamburgensis | 38 | 6.6 |
| ISStsp1 | ISAzo13 | Streptomyces sp. | 38 | 6.6 | |
| ISMno23 | IS91 | Methylobacterium nodulans | 38 | 6.6 | |
| ISMno15 | IS1182 | Methylobacterium nodulans | 38 | 6.6 | |
| ISMtsp13 | IS256 | Methylobacterium sp. | 38 | 6.6 | |
| ISMae10 | IS1634 | Microcystis aeruginosa | 38 | 6.6 | |
| ISMch7 | IS701 | Methylobacterium chloromethanicum | 38 | 6.6 | |
| ISMav6 | IS110 | Mycobacterium avium | 38 | 6.6 | |
| ISRop1 | IS1380 | Rhodococcus opacus | 38 | 6.6 | |
| ISMyma7 | IS1380 | - | Mycobacterium marinum | 38 | 6.6 |
| ISRsp7 | IS1380 | Rhizobium sp. | 38 | 6.6 | |
| ISGka1 | IS5 | IS5 | Geobacillus kaustophilus | 38 | 6.6 |
| ISAnsp11 | IS3 | IS3 | Anaeromyxobacter sp. | 38 | 6.6 |
| ISMdi18 | IS1595 | ISNwi1 | Methylobacterium dichloromethanicum | 38 | 6.6 |
| ISMex12 | IS110 | Methylobacterium extorquens | 38 | 6.6 | |
| ISMch2 | IS5 | IS427 | Methylobacterium chloromethanicum | 38 | 6.6 |
| ISMdi13 | IS256 | Methylobacterium dichloromethanicum | 38 | 6.6 | |
| ISStma11 | ISL3 | Stenotrophomonas maltophilia | 38 | 6.6 | |
| ISAzo32 | IS630 | Azoarcus sp. | 38 | 6.6 | |
| ISAzo18 | IS3 | IS150 | Azoarcus sp. | 38 | 6.6 |
| ISCARN65 | IS21 | Metagenomic data from CARNOULES | 38 | 6.6 | |
| ISAzo21 | IS66 | Azoarcus sp. | 38 | 6.6 | |
| ISAzo19 | IS66 | Azoarcus sp. | 38 | 6.6 | |
| ISKpn11 | IS3 | IS150 | Klebsiella pneumoniae | 38 | 6.6 |
| ISKrh2 | IS481 | Kocuria rhizophila | 38 | 6.6 | |
| ISCARN16 | IS21 | Metagenomic data from CARNOULES | 38 | 6.6 | |
| ISCARN5 | IS110 | IS1111 | Metagenomic data from CARNOULES | 38 | 6.6 |
| ISThsp3 | IS66 | Thiomonas sp. | 38 | 6.6 | |
| ISBusp2 | IS5 | IS5 | Burkholderia sp. | 38 | 6.6 |
| ISSce1 | IS1 | ISMhu11 | Sorangium cellulosum | 38 | 6.6 |
| ISAau4 | Tn3 | Arthrobacter aurescens | 38 | 6.6 | |
| ISRta3 | IS110 | Ralstonia taiwanensis | 38 | 6.6 | |
| ISPre1 | IS5 | IS5 | Pseudomonas resinovorans | 38 | 6.6 |
| ISRpa5 | ISAs1 | Rhodopseudomonas palustris | 38 | 6.6 | |
| ISRhosp7 | IS110 | Rhodococcus sp. | 38 | 6.6 | |
| ISPla1 | IS1595 | ISPna2 | Parvibaculum lavamentivorans | 38 | 6.6 |
| ISBcen21 | IS3 | IS51 | Burkholderia cenocepacia | 38 | 6.6 |
| ISCausp1 | IS3 | IS3 | Caulobacter sp. | 38 | 6.6 |
| ISSav3 | IS701 | Streptomyces avermitilis | 38 | 6.6 | |
| ISHma1 | IS4 | ISH8 | Haloarcula marismortui | 38 | 6.6 |
| ISCsp1 | IS256 | Comamonas sp | 38 | 6.6 | |
| ISNph3 | ISH6 | Natronomonas pharaonis | 38 | 6.6 | |
| ISHma5 | ISH6 | Haloarcula marismortui | 38 | 6.6 | |
| ISFsp4 | IS200/IS605 | Frankia sp. | 38 | 6.6 | |
| ISTfu1 | IS200/IS605 | Thermobifida fusca | 38 | 6.6 | |
| ISAzo5 | IS4 | IS50 | Azoarcus sp. | 38 | 6.6 |
| ISTth1 | IS3 | IS150 | Thermus thermophilus | 38 | 6.6 |
| ISPfl1 | IS110 | IS1111 | Pseudomonas fluorescens | 38 | 6.6 |
| ISBlo2 | IS21 | Bifidobacterium longum | 38 | 6.6 | |
| ISRsp2 | IS21 | - | Rhizobium sp. | 38 | 6.6 |
| ISRso5 | IS630 | - | Ralstonia solanacearum | 38 | 6.6 |
| ISRme1 | IS5 | - | Ralstonia metallidurans | 38 | 6.6 |
| ISPsp3 | IS5 | IS5 | Pseudomonas sp. | 38 | 6.6 |
| ISPa42 | Tn3 | Pseudomonas aeruginosa | 38 | 6.6 | |
| ISH7B | ISNCY | Halobacterium sp. | 38 | 6.6 | |
| IS902 | IS110 | - | Mycobacterium avium | 38 | 6.6 |
| IS901 | IS110 | - | Mycobacterium avium | 38 | 6.6 |
| IS1648 | IS5 | IS427 | Streptomyces coelicolor | 38 | 6.6 |
| ISSme3 | IS66 | Sinorhizobium medicae | 38 | 6.6 | |
| IS1602 | IS607 | Mycobacterium tuberculosis | 38 | 6.6 | |
| IS1511 | IS256 | - | Mycobacterium gordonae | 38 | 6.6 |
| IS1419 | IS481 | - | Burkholderia glumae | 38 | 6.6 |
| IS1311 | IS256 | - | Mycobacterium avium | 38 | 6.6 |
| IS1096 | ISL3 | - | Mycobacterium smegmatis | 38 | 6.6 |
| IS1081 | IS256 | - | Mycobacterium bovis | 38 | 6.6 |
>ISMsm4
Length = 1458
Score = 83.8 bits (42), Expect = 1e-13
Identities = 96/114 (84%)
Strand = Plus / Plus
Query: 141226 ccaacgcccgctccgagggctacaaccgcctcgccaagcacgtcggacgggacgccttcg 141285
||||||||||| |||| |||||||||||| ||| ||| |||||||| || ||||||||
Sbjct: 1289 ccaacgcccgcaccgaaggctacaaccgcatcgtcaaacacgtcgggcgcatcgccttcg 1348
Query: 141286 gcttccgcaatccggtcaaccagagacgccggatacggtgggcctgcacccgcc 141339
||||||||||||| | ||||| | ||||| |||||||||||||||| ||||
Sbjct: 1349 gcttccgcaatcctgagaaccaacgccgccgagtacggtgggcctgcactcgcc 1402
Score = 54.0 bits (27), Expect = 1e-04
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 137106 gagctgccggcggtggccgtgctcgggatcgacgagacccgccgcgg 137152
|||||| || ||||||| |||||||| |||||||||||||| |||||
Sbjct: 574 gagctggcgccggtggcggtgctcggcatcgacgagacccgacgcgg 620
>ISAli15
Length = 2658
Score = 50.1 bits (25), Expect = 0.002
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 204148 gggggccgcctcgacgatctccatc 204172
|||||||||||||||||||||||||
Sbjct: 321 gggggccgcctcgacgatctccatc 297
>IS204
Length = 1452
Score = 48.1 bits (24), Expect = 0.007
Identities = 75/92 (81%)
Strand = Plus / Plus
Query: 141243 ggctacaaccgcctcgccaagcacgtcggacgggacgccttcggcttccgcaatccggtc 141302
|||||||||||| ||| |||||||||||| || ||| ||||| ||||| | ||||
Sbjct: 1300 ggctacaaccgcatcgtcaagcacgtcggccgtatcgcgttcgggttccgtaccccggag 1359
Query: 141303 aaccagagacgccggatacggtgggcctgcac 141334
||||| | |||||| ||||||||||||||||
Sbjct: 1360 aaccaacgccgccgggtacggtgggcctgcac 1391
>ISBlo4
Length = 1399
Score = 46.1 bits (23), Expect = 0.027
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 115108 gctgccggtgaagaggtcgccctcccagtgg 115138
||||||||||| ||| |||||||||||||||
Sbjct: 894 gctgccggtgatgagatcgccctcccagtgg 864
>ISMgi2
Length = 1770
Score = 44.1 bits (22), Expect = 0.11
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 239385 ccgcgccgcggaggcggtcgcg 239406
||||||||||||||||||||||
Sbjct: 758 ccgcgccgcggaggcggtcgcg 779
>ISCARN22
Length = 2674
Score = 44.1 bits (22), Expect = 0.11
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 168106 accagcaggccctgccgctcaa 168127
||||||||||||||||||||||
Sbjct: 2568 accagcaggccctgccgctcaa 2589
>ISMno24
Length = 2157
Score = 42.1 bits (21), Expect = 0.42
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 137928 gcggtccttgcggcccttgcc 137948
|||||||||||||||||||||
Sbjct: 1611 gcggtccttgcggcccttgcc 1631
>ISMno13
Length = 2459
Score = 42.1 bits (21), Expect = 0.42
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 255764 ccgcgctggtgcgcgaggcga 255784
|||||||||||||||||||||
Sbjct: 584 ccgcgctggtgcgcgaggcga 604
>ISMch6
Length = 1379
Score = 42.1 bits (21), Expect = 0.42
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 154101 tgccctgcgcgagacgctgcg 154121
|||||||||||||||||||||
Sbjct: 772 tgccctgcgcgagacgctgcg 792
>ISMav8
Length = 2064
Score = 42.1 bits (21), Expect = 0.42
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 82100 gtgcccccggcaggattcgaa 82120
|||||||||||||||||||||
Sbjct: 1929 gtgcccccggcaggattcgaa 1909
>ISRce1
Length = 1267
Score = 42.1 bits (21), Expect = 0.42
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 272641 cgctgcgcgcggagctcgagg 272661
|||||||||||||||||||||
Sbjct: 729 cgctgcgcgcggagctcgagg 749
>ISVei5
Length = 1620
Score = 42.1 bits (21), Expect = 0.42
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 54628 cctgaaggccaccatcgacac 54648
|||||||||||||||||||||
Sbjct: 557 cctgaaggccaccatcgacac 577
Score = 38.2 bits (19), Expect = 6.6
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 252853 ccgcctgctcgagatcgcccgcg 252875
||||||||| |||||||||||||
Sbjct: 674 ccgcctgctggagatcgcccgcg 696
>ISThsp8
Length = 1929
Score = 42.1 bits (21), Expect = 0.42
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 129346 ggcgcagcagcccggccagcgcggcctgg 129374
|||||||||||||||||| ||| ||||||
Sbjct: 693 ggcgcagcagcccggccaacgccgcctgg 665
>ISCARN23
Length = 1907
Score = 42.1 bits (21), Expect = 0.42
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 248898 ccacgacccggaggccgccgc 248918
|||||||||||||||||||||
Sbjct: 1158 ccacgacccggaggccgccgc 1178
>ISGur5
Length = 1760
Score = 42.1 bits (21), Expect = 0.42
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 264033 gtccgtgggctcgtcctcgcc 264053
|||||||||||||||||||||
Sbjct: 682 gtccgtgggctcgtcctcgcc 662
>TnAs3
Length = 18735
Score = 40.1 bits (20), Expect = 1.7
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 294755 gagcagatcgtcgaggcggc 294774
||||||||||||||||||||
Sbjct: 16326 gagcagatcgtcgaggcggc 16307
>ISGsi1
Length = 1310
Score = 40.1 bits (20), Expect = 1.7
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 153996 cggccggtccgatctgctcg 154015
||||||||||||||||||||
Sbjct: 1189 cggccggtccgatctgctcg 1170
>ISAzs19
Length = 1322
Score = 40.1 bits (20), Expect = 1.7
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 115676 agcggcaactggcgcaacggctac 115699
||||||||| ||||||||||||||
Sbjct: 230 agcggcaaccggcgcaacggctac 253
>ISSar1
Length = 914
Score = 40.1 bits (20), Expect = 1.7
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 54752 ggcttcaccggcgctgcccg 54771
||||||||||||||||||||
Sbjct: 549 ggcttcaccggcgctgcccg 568
>ISNml3
Length = 1798
Score = 40.1 bits (20), Expect = 1.7
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 168005 cctcgcggcggacccggcgg 168024
||||||||||||||||||||
Sbjct: 583 cctcgcggcggacccggcgg 564
Score = 38.2 bits (19), Expect = 6.6
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 108443 ctgccgccggtggacggtc 108461
|||||||||||||||||||
Sbjct: 936 ctgccgccggtggacggtc 918
>ISShes11
Length = 7669
Score = 40.1 bits (20), Expect = 1.7
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 294755 gagcagatcgtcgaggcggc 294774
||||||||||||||||||||
Sbjct: 5260 gagcagatcgtcgaggcggc 5241
>ISVsp13
Length = 1503
Score = 40.1 bits (20), Expect = 1.7
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 52392 ttgcacttcaggctctccgc 52411
||||||||||||||||||||
Sbjct: 1334 ttgcacttcaggctctccgc 1353
>ISRjo3
Length = 1638
Score = 40.1 bits (20), Expect = 1.7
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 121020 ggagctggccgacctggccg 121039
||||||||||||||||||||
Sbjct: 769 ggagctggccgacctggccg 788
>ISPhae1
Length = 1485
Score = 40.1 bits (20), Expect = 1.7
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 246558 cgtcgcccggtgggtcgaga 246577
||||||||||||||||||||
Sbjct: 355 cgtcgcccggtgggtcgaga 374
>ISMno38
Length = 1466
Score = 40.1 bits (20), Expect = 1.7
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 166870 gcaggtcgtcgagccggtgatcgg 166893
||||||||||||||||||| ||||
Sbjct: 1244 gcaggtcgtcgagccggtgttcgg 1267
>ISPfr11
Length = 1315
Score = 40.1 bits (20), Expect = 1.7
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 138121 ctcaggtaggtgatgtcggt 138140
||||||||||||||||||||
Sbjct: 810 ctcaggtaggtgatgtcggt 791
Score = 38.2 bits (19), Expect = 6.6
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 226374 cgatcgccgaggtcgccca 226392
|||||||||||||||||||
Sbjct: 166 cgatcgccgaggtcgccca 184
>ISPfr4
Length = 1415
Score = 40.1 bits (20), Expect = 1.7
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 3550 gctcgagcacctgcgcggct 3569
||||||||||||||||||||
Sbjct: 1298 gctcgagcacctgcgcggct 1317
>ISPfr3
Length = 1457
Score = 40.1 bits (20), Expect = 1.7
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 3550 gctcgagcacctgcgcggct 3569
||||||||||||||||||||
Sbjct: 1340 gctcgagcacctgcgcggct 1359
>ISArsp6
Length = 26712
Score = 40.1 bits (20), Expect = 1.7
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 235464 gccgagcgggaacggatgcg 235483
||||||||||||||||||||
Sbjct: 10310 gccgagcgggaacggatgcg 10329
Score = 38.2 bits (19), Expect = 6.6
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 296719 cgcacccggcgcgggctgc 296737
|||||||||||||||||||
Sbjct: 5348 cgcacccggcgcgggctgc 5330
Score = 38.2 bits (19), Expect = 6.6
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 224281 cccatcaggtcgttggtgt 224299
|||||||||||||||||||
Sbjct: 20857 cccatcaggtcgttggtgt 20875
Score = 38.2 bits (19), Expect = 6.6
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 101148 gccgagcccggccggctga 101166
|||||||||||||||||||
Sbjct: 25816 gccgagcccggccggctga 25834
>ISArsp5
Length = 1426
Score = 40.1 bits (20), Expect = 1.7
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 186902 tcgctgacgaacagctcgcg 186921
||||||||||||||||||||
Sbjct: 583 tcgctgacgaacagctcgcg 602
>ISStsp3
Length = 1925
Score = 40.1 bits (20), Expect = 1.7
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 122111 gctcgccctggcccagctgc 122130
||||||||||||||||||||
Sbjct: 789 gctcgccctggcccagctgc 808
>ISMdi5
Length = 1279
Score = 40.1 bits (20), Expect = 1.7
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 170165 gtgacggctgtcggtcgtac 170184
||||||||||||||||||||
Sbjct: 712 gtgacggctgtcggtcgtac 693
>ISAzo17
Length = 2095
Score = 40.1 bits (20), Expect = 1.7
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 105370 cgagccagcggcgcacctgc 105389
||||||||||||||||||||
Sbjct: 899 cgagccagcggcgcacctgc 880
>ISCARN36
Length = 1180
Score = 40.1 bits (20), Expect = 1.7
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 44242 tcatcgagctcatcggcagg 44261
||||||||||||||||||||
Sbjct: 616 tcatcgagctcatcggcagg 635
>ISRhsp5
Length = 2528
Score = 40.1 bits (20), Expect = 1.7
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 215099 gccgtgatcccgccgcccgc 215118
||||||||||||||||||||
Sbjct: 2063 gccgtgatcccgccgcccgc 2082
Score = 38.2 bits (19), Expect = 6.6
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 163636 gccgcccacctcggccggg 163654
|||||||||||||||||||
Sbjct: 453 gccgcccacctcggccggg 471
>ISAnsp1
Length = 1520
Score = 40.1 bits (20), Expect = 1.7
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 174352 tcgcgctcggcacgctcctc 174371
||||||||||||||||||||
Sbjct: 751 tcgcgctcggcacgctcctc 732
>ISSsp2
Length = 1511
Score = 40.1 bits (20), Expect = 1.7
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 97944 gcgagaagtcgtcgagcacg 97963
||||||||||||||||||||
Sbjct: 952 gcgagaagtcgtcgagcacg 933
>ISBcen28
Length = 2311
Score = 40.1 bits (20), Expect = 1.7
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 239073 cggcgctgctcgaccggctg 239092
||||||||||||||||||||
Sbjct: 2045 cggcgctgctcgaccggctg 2064
>ISRm16
Length = 1299
Score = 40.1 bits (20), Expect = 1.7
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 117145 ggacgcgggcgaggcgggcg 117164
||||||||||||||||||||
Sbjct: 1130 ggacgcgggcgaggcgggcg 1111
>ISScl1
Length = 1099
Score = 40.1 bits (20), Expect = 1.7
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 105910 cgtcgcgccaggccgcgtag 105929
||||||||||||||||||||
Sbjct: 473 cgtcgcgccaggccgcgtag 454
>IS900
Length = 1451
Score = 40.1 bits (20), Expect = 1.7
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 122375 cgaccgcctcgccggcgtcg 122394
||||||||||||||||||||
Sbjct: 1135 cgaccgcctcgccggcgtcg 1154
>IS1549
Length = 1640
Score = 40.1 bits (20), Expect = 1.7
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 147943 ggccggcacccagatcctcgccggcgccgtcacgctccccgagg 147986
|||||||||||||| |||| ||| ||||| | |||| |||||||
Sbjct: 1534 ggccggcacccagaccctcaccgccgccgacccgctacccgagg 1577
Score = 38.2 bits (19), Expect = 6.6
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 259401 caccaccaacctcgtcggg 259419
|||||||||||||||||||
Sbjct: 1273 caccaccaacctcgtcggg 1291
Score = 38.2 bits (19), Expect = 6.6
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 26739 cagaccctcaccgcggccgaccc 26761
|||||||||||||| ||||||||
Sbjct: 1544 cagaccctcaccgccgccgaccc 1566
>ISSna1
Length = 1560
Score = 38.2 bits (19), Expect = 6.6
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 9950 ccggccaggccctgggcga 9968
|||||||||||||||||||
Sbjct: 731 ccggccaggccctgggcga 749
>ISHwa19
Length = 1482
Score = 38.2 bits (19), Expect = 6.6
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 86532 gccgactcgtcacaacacgccgc 86554
|||||| ||||||||||||||||
Sbjct: 422 gccgacccgtcacaacacgccgc 444
>ISHam1
Length = 1139
Score = 38.2 bits (19), Expect = 6.6
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 252513 tcgagcgcggcgtcgacgcgctc 252535
||||||||| |||||||||||||
Sbjct: 534 tcgagcgcgtcgtcgacgcgctc 512
>ISHhu3
Length = 1686
Score = 38.2 bits (19), Expect = 6.6
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 226379 gccgaggtcgcccacgacg 226397
|||||||||||||||||||
Sbjct: 1255 gccgaggtcgcccacgacg 1237
>TnShfr1
Length = 5131
Score = 38.2 bits (19), Expect = 6.6
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 136132 gacgcgcatcgtcgccgcc 136150
|||||||||||||||||||
Sbjct: 2679 gacgcgcatcgtcgccgcc 2697
Score = 38.2 bits (19), Expect = 6.6
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 252854 cgcctgctcgagatcgcccgcga 252876
||||||||| |||||||||||||
Sbjct: 2868 cgcctgctcaagatcgcccgcga 2890
>ISBj11
Length = 2649
Score = 38.2 bits (19), Expect = 6.6
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 180339 tcaccgccgagcacgacat 180357
|||||||||||||||||||
Sbjct: 723 tcaccgccgagcacgacat 705
>ISHli5
Length = 1377
Score = 38.2 bits (19), Expect = 6.6
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 84606 gacggccttgacgcccacggcaaggcc 84632
||||||||||||||||| | |||||||
Sbjct: 609 gacggccttgacgcccaggtcaaggcc 583
>ISTni1
Length = 2377
Score = 38.2 bits (19), Expect = 6.6
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 236095 tggcccgggaccgcgtcgg 236113
|||||||||||||||||||
Sbjct: 1673 tggcccgggaccgcgtcgg 1655
>ISFsp17
Length = 1693
Score = 38.2 bits (19), Expect = 6.6
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 172838 caggtcctcgacctcgtcg 172856
|||||||||||||||||||
Sbjct: 277 caggtcctcgacctcgtcg 259
>ISHth1
Length = 1445
Score = 38.2 bits (19), Expect = 6.6
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 274877 cgcggcgatccgcgagcgg 274895
|||||||||||||||||||
Sbjct: 1036 cgcggcgatccgcgagcgg 1054
>ISMva4
Length = 1458
Score = 38.2 bits (19), Expect = 6.6
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 125158 tcgagcccgccgatgcggc 125176
|||||||||||||||||||
Sbjct: 436 tcgagcccgccgatgcggc 418
>ISGpo1
Length = 1432
Score = 38.2 bits (19), Expect = 6.6
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 220448 gcgaccccggcgcgcagagcggc 220470
|||||| ||||||||||||||||
Sbjct: 243 gcgacctcggcgcgcagagcggc 221
>ISPa38
Length = 6455
Score = 38.2 bits (19), Expect = 6.6
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 304471 cacccggcacttcgcccac 304489
|||||||||||||||||||
Sbjct: 5228 cacccggcacttcgcccac 5246
>ISAzs36
Length = 2622
Score = 38.2 bits (19), Expect = 6.6
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 45821 gtcgacgaacagggccacc 45839
|||||||||||||||||||
Sbjct: 2041 gtcgacgaacagggccacc 2023
>ISAzs29
Length = 3897
Score = 38.2 bits (19), Expect = 6.6
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 153188 ccgacgaccgccgcgtcgtcctg 153210
|||| ||||||||||||||||||
Sbjct: 2677 ccgaggaccgccgcgtcgtcctg 2699
>ISAzs24
Length = 1325
Score = 38.2 bits (19), Expect = 6.6
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 4799 ccggccaaggcgccggccc 4817
|||||||||||||||||||
Sbjct: 492 ccggccaaggcgccggccc 510
>ISAzs18
Length = 2633
Score = 38.2 bits (19), Expect = 6.6
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 98890 ctggccaaggggatccgctacgc 98912
|||||||||| ||||||||||||
Sbjct: 2257 ctggccaaggcgatccgctacgc 2279
>ISAzs17
Length = 7252
Score = 38.2 bits (19), Expect = 6.6
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 270352 tcgtcgccggcatcgcgct 270370
|||||||||||||||||||
Sbjct: 2596 tcgtcgccggcatcgcgct 2578
>ISAzs6
Length = 1385
Score = 38.2 bits (19), Expect = 6.6
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 235205 cgccgtcggcttcgccacc 235223
|||||||||||||||||||
Sbjct: 584 cgccgtcggcttcgccacc 602
Score = 38.2 bits (19), Expect = 6.6
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 58005 ccaggagggcgcggatctc 58023
|||||||||||||||||||
Sbjct: 1249 ccaggagggcgcggatctc 1231
>ISStro2
Length = 912
Score = 38.2 bits (19), Expect = 6.6
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 152035 gctcatcggcgaggcggtc 152053
|||||||||||||||||||
Sbjct: 467 gctcatcggcgaggcggtc 449
>ISNph15
Length = 1476
Score = 38.2 bits (19), Expect = 6.6
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 86532 gccgactcgtcacaacacgccgc 86554
|||||| ||||||||||||||||
Sbjct: 414 gccgacccgtcacaacacgccgc 436
>ISStsp8
Length = 881
Score = 38.2 bits (19), Expect = 6.6
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 139067 ggccgcgaccagcagggcc 139085
|||||||||||||||||||
Sbjct: 218 ggccgcgaccagcagggcc 200
>ISGeob4
Length = 982
Score = 38.2 bits (19), Expect = 6.6
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 288836 gagcagggcggccgcggcg 288854
|||||||||||||||||||
Sbjct: 694 gagcagggcggccgcggcg 676
>ISFsp2
Length = 1040
Score = 38.2 bits (19), Expect = 6.6
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 204091 gacccggttgtgcgccttc 204109
|||||||||||||||||||
Sbjct: 820 gacccggttgtgcgccttc 802
>ISMgi3
Length = 1770
Score = 38.2 bits (19), Expect = 6.6
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 10504 caccacctcgcccgctccg 10522
|||||||||||||||||||
Sbjct: 609 caccacctcgcccgctccg 591
>ISGau7
Length = 2510
Score = 38.2 bits (19), Expect = 6.6
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 178845 ggccgagctgctgccgccgctcg 178867
|||||||| ||||||||||||||
Sbjct: 1760 ggccgagcggctgccgccgctcg 1782
Score = 38.2 bits (19), Expect = 6.6
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 239073 cggcgctgctcgaccggct 239091
|||||||||||||||||||
Sbjct: 2323 cggcgctgctcgaccggct 2341
>ISPkr1
Length = 2469
Score = 38.2 bits (19), Expect = 6.6
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 57782 gatggtcagcggcggcggc 57800
|||||||||||||||||||
Sbjct: 1531 gatggtcagcggcggcggc 1513
>ISBusp3
Length = 1349
Score = 38.2 bits (19), Expect = 6.6
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 111338 tgaagtgctggtcgacctgcttg 111360
||||||||||||||||| |||||
Sbjct: 1115 tgaagtgctggtcgacccgcttg 1093
>ISBj2_B
Length = 1509
Score = 38.2 bits (19), Expect = 6.6
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 173597 ccgagagcctcaccggctg 173615
|||||||||||||||||||
Sbjct: 1137 ccgagagcctcaccggctg 1155
>ISVbsp2
Length = 1489
Score = 38.2 bits (19), Expect = 6.6
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 303820 gggcatcatcgcggccaaccgga 303842
|||||||||| ||||||||||||
Sbjct: 220 gggcatcatcccggccaaccgga 198
>ISNha6
Length = 1547
Score = 38.2 bits (19), Expect = 6.6
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 250816 ggcagcggcggccggccgg 250834
|||||||||||||||||||
Sbjct: 345 ggcagcggcggccggccgg 327
>ISStsp1
Length = 1694
Score = 38.2 bits (19), Expect = 6.6
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 111942 ccggatcagcgccgacacc 111960
|||||||||||||||||||
Sbjct: 444 ccggatcagcgccgacacc 462
>ISMno23
Length = 2271
Score = 38.2 bits (19), Expect = 6.6
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 268187 gtccgctcgcccgagcggc 268205
|||||||||||||||||||
Sbjct: 397 gtccgctcgcccgagcggc 415
>ISMno15
Length = 1561
Score = 38.2 bits (19), Expect = 6.6
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 97089 gacgctcgcctcgacctgg 97107
|||||||||||||||||||
Sbjct: 570 gacgctcgcctcgacctgg 552
>ISMtsp13
Length = 1428
Score = 38.2 bits (19), Expect = 6.6
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 250530 gcgcagcaggtcggcgtcg 250548
|||||||||||||||||||
Sbjct: 227 gcgcagcaggtcggcgtcg 209
>ISMae10
Length = 2073
Score = 38.2 bits (19), Expect = 6.6
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 109772 ctgctcctgatttcaggat 109790
|||||||||||||||||||
Sbjct: 634 ctgctcctgatttcaggat 616
>ISMch7
Length = 1412
Score = 38.2 bits (19), Expect = 6.6
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 303569 ccgcaccagcaggccgcgc 303587
|||||||||||||||||||
Sbjct: 972 ccgcaccagcaggccgcgc 954
>ISMav6
Length = 1472
Score = 38.2 bits (19), Expect = 6.6
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 5047 caaccaggtcttcgccggg 5065
|||||||||||||||||||
Sbjct: 614 caaccaggtcttcgccggg 596
>ISRop1
Length = 4160
Score = 38.2 bits (19), Expect = 6.6
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 262029 gtccaggacggcggggtcg 262047
|||||||||||||||||||
Sbjct: 3661 gtccaggacggcggggtcg 3643
Score = 38.2 bits (19), Expect = 6.6
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 219934 tggcggcggcgcgggtgag 219952
|||||||||||||||||||
Sbjct: 3827 tggcggcggcgcgggtgag 3809
>ISMyma7
Length = 1694
Score = 38.2 bits (19), Expect = 6.6
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 129349 gcagcagcccggccagcgc 129367
|||||||||||||||||||
Sbjct: 687 gcagcagcccggccagcgc 669
>ISRsp7
Length = 2024
Score = 38.2 bits (19), Expect = 6.6
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 300540 cgcggcccgctggtgccgccggc 300562
|||||||||||| ||||||||||
Sbjct: 1618 cgcggcccgctgatgccgccggc 1640
>ISGka1
Length = 1537
Score = 38.2 bits (19), Expect = 6.6
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 8007 acgggtcgcccggcggcgg 8025
|||||||||||||||||||
Sbjct: 248 acgggtcgcccggcggcgg 266
>ISAnsp11
Length = 1510
Score = 38.2 bits (19), Expect = 6.6
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 303172 gctcgccgacctgggcgtc 303190
|||||||||||||||||||
Sbjct: 1084 gctcgccgacctgggcgtc 1102
>ISMdi18
Length = 3479
Score = 38.2 bits (19), Expect = 6.6
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 302233 tcgagcgggccgagcgggc 302251
|||||||||||||||||||
Sbjct: 917 tcgagcgggccgagcgggc 935
>ISMex12
Length = 1418
Score = 38.2 bits (19), Expect = 6.6
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 58839 gcgcctgctccaggccggc 58857
|||||||||||||||||||
Sbjct: 302 gcgcctgctccaggccggc 320
>ISMch2
Length = 861
Score = 38.2 bits (19), Expect = 6.6
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 163168 tcgtcaccgacgcccgcgg 163186
|||||||||||||||||||
Sbjct: 446 tcgtcaccgacgcccgcgg 464
>ISMdi13
Length = 1416
Score = 38.2 bits (19), Expect = 6.6
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 44004 ctcggagaagtcgccggtc 44022
|||||||||||||||||||
Sbjct: 493 ctcggagaagtcgccggtc 475
>ISStma11
Length = 4621
Score = 38.2 bits (19), Expect = 6.6
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 40729 tggtccagcacttcgatgc 40747
|||||||||||||||||||
Sbjct: 2264 tggtccagcacttcgatgc 2282
>ISAzo32
Length = 1100
Score = 38.2 bits (19), Expect = 6.6
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 106699 cgcggcgcgcacgtcgtgccggt 106721
|||||||| ||||||||||||||
Sbjct: 622 cgcggcgcccacgtcgtgccggt 600
>ISAzo18
Length = 1471
Score = 38.2 bits (19), Expect = 6.6
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 20083 cgcctcggctaccgggaccgccgcacc 20109
||||||||| |||| ||||||||||||
Sbjct: 267 cgcctcggcgaccgcgaccgccgcacc 293
>ISCARN65
Length = 2433
Score = 38.2 bits (19), Expect = 6.6
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 92121 gctcgcgtcgagaaccgcggacc 92143
|||||||||||||||| ||||||
Sbjct: 1674 gctcgcgtcgagaacctcggacc 1696
>ISAzo21
Length = 2423
Score = 38.2 bits (19), Expect = 6.6
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 200430 gctcgggctcggccgactggacgtcga 200456
||||||||||| |||||||| ||||||
Sbjct: 1850 gctcgggctcgaccgactgggcgtcga 1824
>ISAzo19
Length = 2423
Score = 38.2 bits (19), Expect = 6.6
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 200430 gctcgggctcggccgactggacgtcga 200456
||||||||||| |||||||| ||||||
Sbjct: 1850 gctcgggctcgaccgactgggcgtcga 1824
>ISKpn11
Length = 1290
Score = 38.2 bits (19), Expect = 6.6
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 185306 cggatcgcggcgagcgcca 185324
|||||||||||||||||||
Sbjct: 155 cggatcgcggcgagcgcca 137
>ISKrh2
Length = 1122
Score = 38.2 bits (19), Expect = 6.6
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 148969 gcctcacgcactcctgcccgcgt 148991
||||||||||| |||||||||||
Sbjct: 1077 gcctcacgcacccctgcccgcgt 1099
>ISCARN16
Length = 2594
Score = 38.2 bits (19), Expect = 6.6
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 203239 aggtctggaagggcaaggcccgcaccg 203265
||||| |||||||||||| ||||||||
Sbjct: 722 aggtcaggaagggcaagggccgcaccg 748
>ISCARN5
Length = 1367
Score = 38.2 bits (19), Expect = 6.6
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 225967 cccgccgatctaccaggtctcga 225989
|||||||||| ||||||||||||
Sbjct: 994 cccgccgatccaccaggtctcga 972
>ISThsp3
Length = 2455
Score = 38.2 bits (19), Expect = 6.6
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 182680 cggcgcggtcctcggcctg 182698
|||||||||||||||||||
Sbjct: 1137 cggcgcggtcctcggcctg 1119
>ISBusp2
Length = 1349
Score = 38.2 bits (19), Expect = 6.6
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 111338 tgaagtgctggtcgacctgcttg 111360
||||||||||||||||| |||||
Sbjct: 1115 tgaagtgctggtcgacccgcttg 1093
>ISSce1
Length = 4601
Score = 38.2 bits (19), Expect = 6.6
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 153708 cggcgacctgctcctccagatcg 153730
||||||||||| |||||||||||
Sbjct: 3743 cggcgacctgcgcctccagatcg 3765
>ISAau4
Length = 3898
Score = 38.2 bits (19), Expect = 6.6
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 253276 caccgccgccgccgtcaaggcgc 253298
||||||||||||||||| |||||
Sbjct: 2969 caccgccgccgccgtcacggcgc 2991
>ISRta3
Length = 1574
Score = 38.2 bits (19), Expect = 6.6
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 157181 gcgccccggcccgctccga 157199
|||||||||||||||||||
Sbjct: 103 gcgccccggcccgctccga 121
>ISPre1
Length = 1192
Score = 38.2 bits (19), Expect = 6.6
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 104305 agctgctgcacggcgatga 104323
|||||||||||||||||||
Sbjct: 682 agctgctgcacggcgatga 700
>ISRpa5
Length = 1193
Score = 38.2 bits (19), Expect = 6.6
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 298484 atcgccctcgacggcaagg 298502
|||||||||||||||||||
Sbjct: 409 atcgccctcgacggcaagg 427
>ISRhosp7
Length = 1455
Score = 38.2 bits (19), Expect = 6.6
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 132182 cgccgacgcgggccacggtgacc 132204
|||| ||||||||||||||||||
Sbjct: 467 cgcctacgcgggccacggtgacc 445
>ISPla1
Length = 1132
Score = 38.2 bits (19), Expect = 6.6
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 195284 tcgacgcactgctcgggcg 195302
|||||||||||||||||||
Sbjct: 165 tcgacgcactgctcgggcg 147
>ISBcen21
Length = 1231
Score = 38.2 bits (19), Expect = 6.6
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 243881 gcagcggctgggcatcacg 243899
|||||||||||||||||||
Sbjct: 150 gcagcggctgggcatcacg 168
>ISCausp1
Length = 1262
Score = 38.2 bits (19), Expect = 6.6
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 20978 ctccagggcgatccgggcg 20996
|||||||||||||||||||
Sbjct: 895 ctccagggcgatccgggcg 877
>ISSav3
Length = 1400
Score = 38.2 bits (19), Expect = 6.6
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 87284 gccggccgcgggctccctcgccg 87306
|||||||| ||||||||||||||
Sbjct: 852 gccggccgtgggctccctcgccg 830
>ISHma1
Length = 1403
Score = 38.2 bits (19), Expect = 6.6
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 284434 ctcatcgtcggcctgctcg 284452
|||||||||||||||||||
Sbjct: 1189 ctcatcgtcggcctgctcg 1171
>ISCsp1
Length = 1393
Score = 38.2 bits (19), Expect = 6.6
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 33503 ggccgagctcgacgccttcgacgcccg 33529
|||||||||||| |||||||| |||||
Sbjct: 956 ggccgagctcgatgccttcgaggcccg 982
>ISNph3
Length = 1449
Score = 38.2 bits (19), Expect = 6.6
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 274877 cgcggcgatccgcgagcgg 274895
|||||||||||||||||||
Sbjct: 1040 cgcggcgatccgcgagcgg 1058
>ISHma5
Length = 1449
Score = 38.2 bits (19), Expect = 6.6
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 274877 cgcggcgatccgcgagcgg 274895
|||||||||||||||||||
Sbjct: 1040 cgcggcgatccgcgagcgg 1058
Score = 38.2 bits (19), Expect = 6.6
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 26700 gccgagcaggccgtcgagg 26718
|||||||||||||||||||
Sbjct: 1170 gccgagcaggccgtcgagg 1188
>ISFsp4
Length = 1784
Score = 38.2 bits (19), Expect = 6.6
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 62976 gtcgtcgacgtcgacgacg 62994
|||||||||||||||||||
Sbjct: 1021 gtcgtcgacgtcgacgacg 1003
Score = 38.2 bits (19), Expect = 6.6
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 62976 gtcgtcgacgtcgacgacg 62994
|||||||||||||||||||
Sbjct: 1004 gtcgtcgacgtcgacgacg 1022
Score = 38.2 bits (19), Expect = 6.6
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 5121 tcgaccgcgacgcggcggaccgc 5143
||||||||||| |||||||||||
Sbjct: 1224 tcgaccgcgacccggcggaccgc 1202
>ISTfu1
Length = 1743
Score = 38.2 bits (19), Expect = 6.6
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 219091 tggcctcggccatctgccg 219109
|||||||||||||||||||
Sbjct: 675 tggcctcggccatctgccg 657
>ISAzo5
Length = 1478
Score = 38.2 bits (19), Expect = 6.6
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 287126 gctgggcgtgctcgatgcg 287144
|||||||||||||||||||
Sbjct: 515 gctgggcgtgctcgatgcg 533
>ISTth1
Length = 1261
Score = 38.2 bits (19), Expect = 6.6
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 287160 gccctcctcgcgcatcagg 287178
|||||||||||||||||||
Sbjct: 624 gccctcctcgcgcatcagg 606
>ISPfl1
Length = 1342
Score = 38.2 bits (19), Expect = 6.6
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1011 ctggccgacgtcggcgacg 1029
|||||||||||||||||||
Sbjct: 765 ctggccgacgtcggcgacg 783
>ISBlo2
Length = 2455
Score = 38.2 bits (19), Expect = 6.6
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 212703 gtccacggtgacgcgggcg 212721
|||||||||||||||||||
Sbjct: 427 gtccacggtgacgcgggcg 445
>ISRsp2
Length = 2623
Score = 38.2 bits (19), Expect = 6.6
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 191075 cgccgcccgcggtctcgac 191093
|||||||||||||||||||
Sbjct: 1974 cgccgcccgcggtctcgac 1992
>ISRso5
Length = 1159
Score = 38.2 bits (19), Expect = 6.6
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 79285 agccatccgccggcttcgtatgc 79307
|||||||||| ||||||||||||
Sbjct: 402 agccatccgcaggcttcgtatgc 380
>ISRme1
Length = 1331
Score = 38.2 bits (19), Expect = 6.6
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 72087 accaggcgctggcgaagat 72105
|||||||||||||||||||
Sbjct: 188 accaggcgctggcgaagat 206
>ISPsp3
Length = 1190
Score = 38.2 bits (19), Expect = 6.6
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 235381 tccgttcggcggcggccct 235399
|||||||||||||||||||
Sbjct: 1072 tccgttcggcggcggccct 1054
>ISPa42
Length = 16941
Score = 38.2 bits (19), Expect = 6.6
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 111336 ggtgaagtgctggtcgacc 111354
|||||||||||||||||||
Sbjct: 12257 ggtgaagtgctggtcgacc 12239
>ISH7B
Length = 2924
Score = 38.2 bits (19), Expect = 6.6
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 170375 ccgccggctgctcgccgatctcg 170397
|||||||||| ||||||||||||
Sbjct: 2674 ccgccggctgatcgccgatctcg 2652
>IS902
Length = 1470
Score = 38.2 bits (19), Expect = 6.6
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 5047 caaccaggtcttcgccggg 5065
|||||||||||||||||||
Sbjct: 613 caaccaggtcttcgccggg 595
>IS901
Length = 1472
Score = 38.2 bits (19), Expect = 6.6
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 5047 caaccaggtcttcgccggg 5065
|||||||||||||||||||
Sbjct: 614 caaccaggtcttcgccggg 596
>IS1648
Length = 969
Score = 38.2 bits (19), Expect = 6.6
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 283346 cgggccgggtccggggtcg 283364
|||||||||||||||||||
Sbjct: 642 cgggccgggtccggggtcg 624
>ISSme3
Length = 3149
Score = 38.2 bits (19), Expect = 6.6
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 125338 acgcgccggcgcgggcgct 125356
|||||||||||||||||||
Sbjct: 1448 acgcgccggcgcgggcgct 1430
>IS1602
Length = 2053
Score = 38.2 bits (19), Expect = 6.6
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 17384 ggccggctggtcgtccacg 17402
|||||||||||||||||||
Sbjct: 197 ggccggctggtcgtccacg 179
Score = 38.2 bits (19), Expect = 6.6
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 201670 tgggcaccccgcgccgcca 201688
|||||||||||||||||||
Sbjct: 1665 tgggcaccccgcgccgcca 1683
>IS1511
Length = 1278
Score = 38.2 bits (19), Expect = 6.6
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 288394 cgaggtggtcggcgagcttgggg 288416
||||||||||||||| |||||||
Sbjct: 997 cgaggtggtcggcgaccttgggg 975
>IS1419
Length = 1215
Score = 38.2 bits (19), Expect = 6.6
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 121033 ctggccgccgagctgggca 121051
|||||||||||||||||||
Sbjct: 167 ctggccgccgagctgggca 185
>IS1311
Length = 1416
Score = 38.2 bits (19), Expect = 6.6
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 23720 cgacgtcggtgaccccgaggacg 23742
||||||||||||| |||||||||
Sbjct: 716 cgacgtcggtgactccgaggacg 738
>IS1096
Length = 2259
Score = 38.2 bits (19), Expect = 6.6
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 163585 ccgcagccggcggcggatcatcg 163607
|||||||||| ||||||||||||
Sbjct: 1664 ccgcagccgggggcggatcatcg 1686
>IS1081
Length = 1435
Score = 38.2 bits (19), Expect = 6.6
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 30321 acgaccagcccgacgccga 30339
|||||||||||||||||||
Sbjct: 970 acgaccagcccgacgccga 988
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_5_length_280089_cov_75.7962_ID_5178
(280,089 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISFK1 | IS21 | Bradyrhizobium japonicum | 46 | 0.025 | |
| ISCARN97 | IS110 | Metagenomic data from CARNOULES | 46 | 0.025 | |
| ISAisp4 | IS110 | Acidovorax sp. | 44 | 0.098 | |
| ISShes12 | IS1634 | Shewanella sp. | 44 | 0.098 | |
| TnXo19 | Tn3 | Xanthomonas oryzae | 42 | 0.39 | |
| TnAs2 | Tn3 | Aeromonas salmonicida | 42 | 0.39 | |
| ISSri1 | ISKra4 | ISKra4 | Streptomyces rimosus | 42 | 0.39 |
| ISMlu11 | IS256 | Micrococcus luteus | 42 | 0.39 | |
| ISStma17 | IS3 | IS51 | Stenotrophomonas maltophilia | 42 | 0.39 |
| ISRle11 | IS1182 | Rhizobium leguminosarum | 42 | 0.39 | |
| ISHwa7 | IS630 | Haloquadratum walsbyi | 42 | 0.39 | |
| ISRhru1 | IS1595 | ISSod11 | Rhodospirillum rubrum | 42 | 0.39 |
| ISNisp3 | IS3 | IS407 | Nitrobacter sp. | 42 | 0.39 |
| ISBcen4 | IS110 | IS1111 | Burkholderia cenocepacia | 42 | 0.39 |
| IS406 | IS256 | - | Burkholderia cepacia | 42 | 0.39 |
| ISSiac5 | ISLre2 | Singulisphaera acidiphila | 40 | 1.5 | |
| ISGpo1 | IS256 | Gordonia polyisoprenivorans | 40 | 1.5 | |
| ISPa40 | Tn3 | Pseudomonas aeruginosa | 40 | 1.5 | |
| ISPve1 | IS21 | Paracoccus versutus | 40 | 1.5 | |
| ISAzs24 | IS3 | IS51 | Azospirillum sp. | 40 | 1.5 |
| ISAzs18 | IS66 | Azospirillum sp. | 40 | 1.5 | |
| ISRel15 | IS66 | Rhizobium etli | 40 | 1.5 | |
| ISFsp2 | IS5 | ISL2 | Frankia sp. | 40 | 1.5 |
| ISStau8 | IS1182 | Stigmatella aurantiaca | 40 | 1.5 | |
| ISPmar1 | IS6 | Paracoccus marcusii | 40 | 1.5 | |
| ISBmu23 | IS5 | IS5 | Burkholderia multivorans | 40 | 1.5 |
| ISMno33 | IS1182 | Methylobacterium nodulans | 40 | 1.5 | |
| ISShwo5 | IS110 | IS1111 | Shewanella woodyi | 40 | 1.5 |
| ISPfr6 | ISL3 | Propionibacterium freudenreichii | 40 | 1.5 | |
| ISRer1 | IS1380 | Rhodococcus erythropolis | 40 | 1.5 | |
| ISDeac1 | IS1380 | Delftia acidovorans | 40 | 1.5 | |
| ISShsp2 | IS1182 | Sphingomonas sp. | 40 | 1.5 | |
| ISAnsp12 | IS66 | Anaeromyxobacter sp. | 40 | 1.5 | |
| ISMex33 | IS3 | IS51 | Methylobacterium extorquens | 40 | 1.5 |
| ISThsp4 | IS3 | IS3 | Thiomonas sp. | 40 | 1.5 |
| ISSav7 | IS481 | Streptomyces avermitilis | 40 | 1.5 | |
| ISBvu4 | IS66 | Bacteroides vulgatus | 40 | 1.5 | |
| IS1553 | IS256 | Mycobacterium tuberculosis | 40 | 1.5 | |
| ISMpe1 | IS3 | IS3 | Methylibium petroleiphilum | 40 | 1.5 |
| ISPpa1 | IS256 | Paracoccus pantotrophus | 40 | 1.5 | |
| ISPsy14 | IS21 | Pseudomonas syringae | 40 | 1.5 | |
| IS481v2 | IS481 | - | Bordetella pertussis | 40 | 1.5 |
| IS481v1 | IS481 | - | Bordetella pertussis | 40 | 1.5 |
| IS481 | IS481 | Bordetella pertussis | 40 | 1.5 | |
| IS401 | IS3 | IS51 | Burkholderia cepacia | 40 | 1.5 |
| IS1122 | IS481 | - | Clavibacter michiganensis | 40 | 1.5 |
| ISMaq7 | IS256 | Marinobacter aquaeolei | 38 | 6.0 | |
| ISMno20 | IS110 | IS1111 | Methylobacterium nodulans | 38 | 6.0 |
| ISNhu2 | IS200/IS605 | IS1341 | Natrialba hulunbeirensis | 38 | 6.0 |
| ISPa56 | IS3 | IS2 | Pseudomonas aeruginosa | 38 | 6.0 |
| ISHla16 | IS200/IS605 | Halorubrum lacusprofundi | 38 | 6.0 | |
| ISHli6 | IS1595 | ISH4 | Halohasta litchfieldiae | 38 | 6.0 |
| ISHla12 | IS1595 | ISH4 | Halorubrum lacusprofundi | 38 | 6.0 |
| ISHsa1 | ISH6 | Halococcus salifodinae | 38 | 6.0 | |
| ISHth1 | ISH6 | Halococcus thailandensis | 38 | 6.0 | |
| ISMva4 | IS256 | Mycobacterium vanbaalenii | 38 | 6.0 | |
| ISSoEn2 | IS256 | Primary endosymbiont of Sitophilus oryzae | 38 | 6.0 | |
| ISPa36 | IS21 | Pseudomonas aeruginosa | 38 | 6.0 | |
| ISAzs34 | ISNCY | IS892 | Azospirillum sp. | 38 | 6.0 |
| ISAzs8 | ISL3 | Azospirillum sp. | 38 | 6.0 | |
| ISAzs2 | IS21 | Azospirillum sp. | 38 | 6.0 | |
| ISStsp8 | IS5 | ISL2 | Streptomyces sp. | 38 | 6.0 |
| ISMau1 | IS5 | ISL2 | Micromonospora aurantiaca | 38 | 6.0 |
| ISPme2 | IS5 | IS427 | Paracoccus methylutens | 38 | 6.0 |
| ISBrsp7 | IS5 | Bradyrhizobium sp. | 38 | 6.0 | |
| ISFsp12 | ISAzo13 | Frankia sp. | 38 | 6.0 | |
| ISMra5 | IS5 | IS427 | Methylobacterium radiotolerans | 38 | 6.0 |
| ISMno19 | IS630 | Methylobacterium nodulans | 38 | 6.0 | |
| ISMno27 | IS6 | Methylobacterium nodulans | 38 | 6.0 | |
| ISMno35 | IS6 | Methylobacterium nodulans | 38 | 6.0 | |
| ISMno8 | IS1182 | Methylobacterium nodulans | 38 | 6.0 | |
| ISMtsp8 | IS21 | Methylobacterium sp. | 38 | 6.0 | |
| ISMch3 | IS3 | IS150 | Methylobacterium chloromethanicum | 38 | 6.0 |
| ISAar38 | IS5 | IS427 | Arthrobacter arilaitensis | 38 | 6.0 |
| ISCli1 | IS1380 | Corynebacterium lipophiloflavum | 38 | 6.0 | |
| ISStr1 | IS1380 | Salinispora tropica | 38 | 6.0 | |
| ISMyma7 | IS1380 | - | Mycobacterium marinum | 38 | 6.0 |
| ISFsp15 | IS1380 | Frankia sp. | 38 | 6.0 | |
| ISFsp14 | IS1380 | Frankia sp. | 38 | 6.0 | |
| ISAzo1 | IS1182 | Azoarcus sp. | 38 | 6.0 | |
| ISAde2 | IS1182 | Anaeromyxobacter dehalogenans | 38 | 6.0 | |
| ISMdi9 | IS110 | IS1111 | Methylobacterium dichloromethanicum | 38 | 6.0 |
| ISMsi5 | IS3 | IS3 | Methylocella silvestris | 38 | 6.0 |
| ISMsi3 | IS3 | IS407 | Methylocella silvestris | 38 | 6.0 |
| ISBps2 | IS3 | IS3 | Burkholderia pseudomallei | 38 | 6.0 |
| ISMex35 | IS5 | IS5 | Methylobacterium extorquens | 38 | 6.0 |
| ISMdi7 | IS21 | Methylobacterium dichloromethanicum | 38 | 6.0 | |
| ISMex38 | Tn3 | Methylobacterium extorquens | 38 | 6.0 | |
| ISMex18 | IS630 | Methylobacterium extorquens | 38 | 6.0 | |
| ISAnsp5 | IS21 | Anaeromyxobacter sp. | 38 | 6.0 | |
| ISMex22 | Tn3 | Methylobacterium extorquens | 38 | 6.0 | |
| ISMex1 | IS3 | IS407 | Methylobacterium extorquens | 38 | 6.0 |
| ISCARN100 | IS1595 | ISSod11 | Metagenomic data from CARNOULES | 38 | 6.0 |
| ISAzo38 | IS5 | IS427 | Azoarcus sp. | 38 | 6.0 |
| ISCARN82 | IS5 | IS1031 | Metagenomic data from CARNOULES | 38 | 6.0 |
| ISCARN28 | IS110 | IS1111 | Metagenomic data from CARNOULES | 38 | 6.0 |
| ISCARN17 | IS21 | Metagenomic data from CARNOULES | 38 | 6.0 | |
| ISAzca2 | IS66 | Azorhizobium caulinodans | 38 | 6.0 | |
| ISGdi12 | IS701 | Gluconacetobacter diazotrophicus | 38 | 6.0 | |
| ISAnsp3 | IS66 | Anaeromyxobacter sp. | 38 | 6.0 | |
| ISThsp1 | IS1182 | Thiomonas sp. | 38 | 6.0 | |
| ISApr6 | IS66 | Alpha proteobacterium | 38 | 6.0 | |
| ISAli11 | ISL3 | Azospirillum lipoferum | 38 | 6.0 | |
| ISRhru2 | IS66 | ISBst12 | Rhodospirillum rubrum | 38 | 6.0 |
| ISFsp10 | IS66 | ISBst12 | Frankia sp. | 38 | 6.0 |
| ISUnCu3 | IS21 | Uncultured bacterium | 38 | 6.0 | |
| ISApr2 | IS1595 | ISSod11 | Alpha proteobacterium | 38 | 6.0 |
| ISMtsp1 | IS6 | Methylobacterium sp. | 38 | 6.0 | |
| ISMysp5 | IS481 | Mycobacterium sp. | 38 | 6.0 | |
| ISBad2 | IS3 | IS150 | Bifidobacterium adolescentis | 38 | 6.0 |
| ISLsp1 | IS1595 | IS1595 | Leptospirillum sp. | 38 | 6.0 |
| ISGur1 | IS4 | ISPepr1 | Geobacter uraniumreducens | 38 | 6.0 |
| ISMysp1 | IS110 | Mycobacterium sp. | 38 | 6.0 | |
| ISAcr1 | IS1595 | ISSod11 | Acidiphilium cryptum | 38 | 6.0 |
| ISTfu1 | IS200/IS605 | Thermobifida fusca | 38 | 6.0 | |
| ISAzo3 | ISAs1 | Azoarcus sp. | 38 | 6.0 | |
| ISMmg2 | IS110 | IS1111 | Magnetospirillum magnetotacticum | 38 | 6.0 |
| ISMlo3 | IS110 | IS1111 | Mesorhizobium loti | 38 | 6.0 |
| ISPps1 | IS91 | - | Pseudomonas huttiensis | 38 | 6.0 |
| IS987 | IS3 | IS51 | Mycobacterium bovis | 38 | 6.0 |
| IS986 | IS3 | IS51 | Mycobacterium tuberculosis | 38 | 6.0 |
| IS6110 | IS3 | IS51 | Mycobacterium tuberculosis | 38 | 6.0 |
| IS1650 | IS5 | IS427 | Streptomyces coelicolor | 38 | 6.0 |
| IS1547 | IS110 | - | Mycobacterium tuberculosis | 38 | 6.0 |
| IS1414 | IS256 | - | Escherichia coli | 38 | 6.0 |
>ISFK1
Length = 2592
Score = 46.1 bits (23), Expect = 0.025
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 85148 cgaactgtttgccgaactcgaca 85170
|||||||||||||||||||||||
Sbjct: 1100 cgaactgtttgccgaactcgaca 1122
>ISCARN97
Length = 1555
Score = 46.1 bits (23), Expect = 0.025
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 116592 gtcaacgcccggcacgtcaagacggtgccgggccgcaagaccgatgt 116638
||||| |||||||||||||||| ||||| |||||||| || |||||
Sbjct: 518 gtcaatgcccggcacgtcaagaatgtgccaggccgcaaaacggatgt 564
>ISAisp4
Length = 1614
Score = 44.1 bits (22), Expect = 0.098
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 116590 tggtcaacgcccggcacgtcaagacggtgccgggccgcaagaccga 116635
|||||||||| ||||| |||||| | ||||| || |||||||||||
Sbjct: 563 tggtcaacgcgcggcatgtcaaggctgtgcccggtcgcaagaccga 608
>ISShes12
Length = 1721
Score = 44.1 bits (22), Expect = 0.098
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 147438 cgggtggctgaggcgcgcaacc 147459
||||||||||||||||||||||
Sbjct: 1241 cgggtggctgaggcgcgcaacc 1262
>TnXo19
Length = 18767
Score = 42.1 bits (21), Expect = 0.39
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 64861 ggaagccgatgcgatcgtcca 64881
|||||||||||||||||||||
Sbjct: 10567 ggaagccgatgcgatcgtcca 10547
>TnAs2
Length = 8650
Score = 42.1 bits (21), Expect = 0.39
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 55038 agcagctcggtgatcttgacg 55058
|||||||||||||||||||||
Sbjct: 7392 agcagctcggtgatcttgacg 7372
Score = 40.1 bits (20), Expect = 1.5
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 129306 catcggcgaggcgctgatcgacgc 129329
||||||| ||||||||||||||||
Sbjct: 6643 catcggccaggcgctgatcgacgc 6666
>ISSri1
Length = 2269
Score = 42.1 bits (21), Expect = 0.39
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 38836 cccggcggacgaggcgctgtcgctc 38860
|||||||||||||||| ||||||||
Sbjct: 1065 cccggcggacgaggcgttgtcgctc 1089
>ISMlu11
Length = 1434
Score = 42.1 bits (21), Expect = 0.39
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 107135 agcttcaccgccgcctcggtc 107155
|||||||||||||||||||||
Sbjct: 1214 agcttcaccgccgcctcggtc 1194
>ISStma17
Length = 1321
Score = 42.1 bits (21), Expect = 0.39
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 196097 tcgatgccggcctcggccagc 196117
|||||||||||||||||||||
Sbjct: 1026 tcgatgccggcctcggccagc 1006
>ISRle11
Length = 1527
Score = 42.1 bits (21), Expect = 0.39
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 276694 tcgaggtcggtgctgtcgggc 276714
|||||||||||||||||||||
Sbjct: 856 tcgaggtcggtgctgtcgggc 876
>ISHwa7
Length = 1142
Score = 42.1 bits (21), Expect = 0.39
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 192198 tcggcgacgcgctcgacgagg 192218
|||||||||||||||||||||
Sbjct: 522 tcggcgacgcgctcgacgagg 542
>ISRhru1
Length = 1027
Score = 42.1 bits (21), Expect = 0.39
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 23124 aggtcgttgtcgccgtcgaag 23144
|||||||||||||||||||||
Sbjct: 588 aggtcgttgtcgccgtcgaag 608
>ISNisp3
Length = 1234
Score = 42.1 bits (21), Expect = 0.39
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 228893 cgcggaccgcgtcgacgagct 228913
|||||||||||||||||||||
Sbjct: 387 cgcggaccgcgtcgacgagct 367
>ISBcen4
Length = 1349
Score = 42.1 bits (21), Expect = 0.39
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 28570 gaagacccgcttggcgatgtc 28590
|||||||||||||||||||||
Sbjct: 103 gaagacccgcttggcgatgtc 83
>IS406
Length = 1367
Score = 42.1 bits (21), Expect = 0.39
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 139647 cgtcggcgcagctcccggttg 139667
|||||||||||||||||||||
Sbjct: 1192 cgtcggcgcagctcccggttg 1172
>ISSiac5
Length = 1429
Score = 40.1 bits (20), Expect = 1.5
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 31553 ggttcggccggttcgccgag 31572
||||||||||||||||||||
Sbjct: 777 ggttcggccggttcgccgag 758
>ISGpo1
Length = 1432
Score = 40.1 bits (20), Expect = 1.5
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 184152 cgttggcgatggcgctctcg 184171
||||||||||||||||||||
Sbjct: 841 cgttggcgatggcgctctcg 860
>ISPa40
Length = 6592
Score = 40.1 bits (20), Expect = 1.5
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 55038 agcagctcggtgatcttgacgcgc 55061
||||||||||||||||||| ||||
Sbjct: 5337 agcagctcggtgatcttgatgcgc 5314
>ISPve1
Length = 2503
Score = 40.1 bits (20), Expect = 1.5
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 94429 ggaggcccgcgacgagcgcc 94448
||||||||||||||||||||
Sbjct: 2051 ggaggcccgcgacgagcgcc 2070
>ISAzs24
Length = 1325
Score = 40.1 bits (20), Expect = 1.5
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 216738 ctccagcgccttgatccgct 216757
||||||||||||||||||||
Sbjct: 287 ctccagcgccttgatccgct 268
>ISAzs18
Length = 2633
Score = 40.1 bits (20), Expect = 1.5
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 88322 cccgccggcgccggtgatga 88341
||||||||||||||||||||
Sbjct: 161 cccgccggcgccggtgatga 142
>ISRel15
Length = 2497
Score = 40.1 bits (20), Expect = 1.5
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 37509 gccggcgtcgcgcaccagcg 37528
||||||||||||||||||||
Sbjct: 560 gccggcgtcgcgcaccagcg 541
>ISFsp2
Length = 1040
Score = 40.1 bits (20), Expect = 1.5
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 275077 ctgcgcgccgtcggcgaacg 275096
||||||||||||||||||||
Sbjct: 830 ctgcgcgccgtcggcgaacg 849
>ISStau8
Length = 1749
Score = 40.1 bits (20), Expect = 1.5
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 126980 ccgagcgcgatgcccctgcc 126999
||||||||||||||||||||
Sbjct: 1613 ccgagcgcgatgcccctgcc 1594
>ISPmar1
Length = 821
Score = 40.1 bits (20), Expect = 1.5
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 144017 cgcgggcgaagaacttgatc 144036
||||||||||||||||||||
Sbjct: 444 cgcgggcgaagaacttgatc 425
>ISBmu23
Length = 1210
Score = 40.1 bits (20), Expect = 1.5
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 180561 tcgttggtcgccgtggtgaccacg 180584
||||||| ||||||||||||||||
Sbjct: 689 tcgttggccgccgtggtgaccacg 666
>ISMno33
Length = 1767
Score = 40.1 bits (20), Expect = 1.5
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 245654 cggcgaaccgggcgaggttgagggccgc 245681
|||||| |||| ||||||||||||||||
Sbjct: 1680 cggcgagccggtcgaggttgagggccgc 1653
>ISShwo5
Length = 1611
Score = 40.1 bits (20), Expect = 1.5
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 25666 cgacgtagtaggtcgcgggc 25685
||||||||||||||||||||
Sbjct: 482 cgacgtagtaggtcgcgggc 463
>ISPfr6
Length = 1436
Score = 40.1 bits (20), Expect = 1.5
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 96196 ccctcggcgagcaccgcgtc 96215
||||||||||||||||||||
Sbjct: 562 ccctcggcgagcaccgcgtc 543
>ISRer1
Length = 1687
Score = 40.1 bits (20), Expect = 1.5
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 155686 ggcgagcgccgcgtcggcgtcggtggcc 155713
||||||||| | ||||||||||||||||
Sbjct: 463 ggcgagcgcggtgtcggcgtcggtggcc 436
>ISDeac1
Length = 1736
Score = 40.1 bits (20), Expect = 1.5
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 248718 ctggccgtgcgggtggtgca 248737
||||||||||||||||||||
Sbjct: 1362 ctggccgtgcgggtggtgca 1381
>ISShsp2
Length = 1526
Score = 40.1 bits (20), Expect = 1.5
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 19773 ggccgaccgggacggcttcatccg 19796
|||||||| |||||||||||||||
Sbjct: 1097 ggccgaccaggacggcttcatccg 1120
>ISAnsp12
Length = 2926
Score = 40.1 bits (20), Expect = 1.5
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 183686 gatgcggtcggcctcggcgc 183705
||||||||||||||||||||
Sbjct: 1148 gatgcggtcggcctcggcgc 1129
>ISMex33
Length = 1318
Score = 40.1 bits (20), Expect = 1.5
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 216738 ctccagcgccttgatccgct 216757
||||||||||||||||||||
Sbjct: 281 ctccagcgccttgatccgct 262
>ISThsp4
Length = 1289
Score = 40.1 bits (20), Expect = 1.5
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 98368 acttcgcacccgaggcgccg 98387
||||||||||||||||||||
Sbjct: 718 acttcgcacccgaggcgccg 737
>ISSav7
Length = 2992
Score = 40.1 bits (20), Expect = 1.5
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 161366 gtcccagcggcggcgcagctcctc 161389
|||||||| |||||||||||||||
Sbjct: 638 gtcccagccgcggcgcagctcctc 661
Score = 38.2 bits (19), Expect = 6.0
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 83566 gaccgccgcaatccggcgc 83584
|||||||||||||||||||
Sbjct: 412 gaccgccgcaatccggcgc 394
Score = 38.2 bits (19), Expect = 6.0
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 126429 ccgcgcggtcgccgccgcg 126447
|||||||||||||||||||
Sbjct: 818 ccgcgcggtcgccgccgcg 800
>ISBvu4
Length = 2371
Score = 40.1 bits (20), Expect = 1.5
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 160848 ccggcccggtgctcgtcaccgcgg 160871
|||||||||||||| |||||||||
Sbjct: 1519 ccggcccggtgctcttcaccgcgg 1542
>IS1553
Length = 1406
Score = 40.1 bits (20), Expect = 1.5
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 15780 tcgccgacgtcgaggccgag 15799
||||||||||||||||||||
Sbjct: 738 tcgccgacgtcgaggccgag 719
>ISMpe1
Length = 1295
Score = 40.1 bits (20), Expect = 1.5
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 250922 acgccagccgagccggccgg 250941
||||||||||||||||||||
Sbjct: 470 acgccagccgagccggccgg 489
>ISPpa1
Length = 1376
Score = 40.1 bits (20), Expect = 1.5
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 119255 tggacccagcagcgctgttc 119274
||||||||||||||||||||
Sbjct: 895 tggacccagcagcgctgttc 876
>ISPsy14
Length = 2597
Score = 40.1 bits (20), Expect = 1.5
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 116748 atcgaccggcacaccggcgagatc 116771
||||||||||| ||||||||||||
Sbjct: 641 atcgaccggcaaaccggcgagatc 664
>IS481v2
Length = 1043
Score = 40.1 bits (20), Expect = 1.5
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 61781 ggagctgcgccgcaagcggc 61800
||||||||||||||||||||
Sbjct: 337 ggagctgcgccgcaagcggc 356
>IS481v1
Length = 1043
Score = 40.1 bits (20), Expect = 1.5
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 61781 ggagctgcgccgcaagcggc 61800
||||||||||||||||||||
Sbjct: 337 ggagctgcgccgcaagcggc 356
>IS481
Length = 1043
Score = 40.1 bits (20), Expect = 1.5
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 61781 ggagctgcgccgcaagcggc 61800
||||||||||||||||||||
Sbjct: 337 ggagctgcgccgcaagcggc 356
>IS401
Length = 1316
Score = 40.1 bits (20), Expect = 1.5
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 196097 tcgatgccggcctcggccag 196116
||||||||||||||||||||
Sbjct: 1023 tcgatgccggcctcggccag 1004
>IS1122
Length = 1068
Score = 40.1 bits (20), Expect = 1.5
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 92396 ggctcgtcctcgtcggcacc 92415
||||||||||||||||||||
Sbjct: 310 ggctcgtcctcgtcggcacc 291
>ISMaq7
Length = 1379
Score = 38.2 bits (19), Expect = 6.0
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 201617 gccgtcgaggccgagcttc 201635
|||||||||||||||||||
Sbjct: 200 gccgtcgaggccgagcttc 218
>ISMno20
Length = 1798
Score = 38.2 bits (19), Expect = 6.0
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 275085 cgtcggcgaacggatccgg 275103
|||||||||||||||||||
Sbjct: 793 cgtcggcgaacggatccgg 811
>ISNhu2
Length = 1433
Score = 38.2 bits (19), Expect = 6.0
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 206704 cgaggcggtcgagctcgtcggcc 206726
||||||||||| |||||||||||
Sbjct: 837 cgaggcggtcgcgctcgtcggcc 815
>ISPa56
Length = 1359
Score = 38.2 bits (19), Expect = 6.0
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 173922 gccatcacctcacggtcgc 173940
|||||||||||||||||||
Sbjct: 893 gccatcacctcacggtcgc 875
>ISHla16
Length = 1836
Score = 38.2 bits (19), Expect = 6.0
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 267491 gctacaacggcgtcgtcgg 267509
|||||||||||||||||||
Sbjct: 680 gctacaacggcgtcgtcgg 698
>ISHli6
Length = 1046
Score = 38.2 bits (19), Expect = 6.0
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 276881 cggcttggagcaggccgct 276899
|||||||||||||||||||
Sbjct: 924 cggcttggagcaggccgct 942
>ISHla12
Length = 1046
Score = 38.2 bits (19), Expect = 6.0
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 276881 cggcttggagcaggccgct 276899
|||||||||||||||||||
Sbjct: 924 cggcttggagcaggccgct 942
>ISHsa1
Length = 1467
Score = 38.2 bits (19), Expect = 6.0
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 176014 ggcgctgctgcagctgcgcctcg 176036
||||||||| |||||||||||||
Sbjct: 1310 ggcgctgcttcagctgcgcctcg 1332
>ISHth1
Length = 1445
Score = 38.2 bits (19), Expect = 6.0
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 41079 cctcgaagagctcgtcgag 41097
|||||||||||||||||||
Sbjct: 199 cctcgaagagctcgtcgag 217
>ISMva4
Length = 1458
Score = 38.2 bits (19), Expect = 6.0
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 207940 gtcgtcgagcccgccgatg 207958
|||||||||||||||||||
Sbjct: 440 gtcgtcgagcccgccgatg 422
Score = 38.2 bits (19), Expect = 6.0
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 271588 gaggccgcccgcgccgagc 271606
|||||||||||||||||||
Sbjct: 984 gaggccgcccgcgccgagc 1002
>ISSoEn2
Length = 1315
Score = 38.2 bits (19), Expect = 6.0
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 128189 tcggtgaccgcctggacgg 128207
|||||||||||||||||||
Sbjct: 1253 tcggtgaccgcctggacgg 1271
>ISPa36
Length = 2468
Score = 38.2 bits (19), Expect = 6.0
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 272425 ccgacctggtcatcctcga 272443
|||||||||||||||||||
Sbjct: 2084 ccgacctggtcatcctcga 2102
>ISAzs34
Length = 1650
Score = 38.2 bits (19), Expect = 6.0
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 231469 cggcggcctgaccgcggcc 231487
|||||||||||||||||||
Sbjct: 1245 cggcggcctgaccgcggcc 1263
>ISAzs8
Length = 1373
Score = 38.2 bits (19), Expect = 6.0
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 47215 cgcgacgacgacgccgtgcgcgc 47237
|||||||| ||||||||||||||
Sbjct: 1147 cgcgacgaggacgccgtgcgcgc 1169
>ISAzs2
Length = 2609
Score = 38.2 bits (19), Expect = 6.0
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 119441 tgctggccccgctgcgcga 119459
|||||||||||||||||||
Sbjct: 970 tgctggccccgctgcgcga 988
>ISStsp8
Length = 881
Score = 38.2 bits (19), Expect = 6.0
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 150893 agcaggtccgcgcccgcgt 150911
|||||||||||||||||||
Sbjct: 673 agcaggtccgcgcccgcgt 691
>ISMau1
Length = 914
Score = 38.2 bits (19), Expect = 6.0
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 143595 gccgtcgacctcctcgccg 143613
|||||||||||||||||||
Sbjct: 349 gccgtcgacctcctcgccg 367
Score = 38.2 bits (19), Expect = 6.0
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 20235 gcggctgtcacgagggcag 20253
|||||||||||||||||||
Sbjct: 714 gcggctgtcacgagggcag 732
>ISPme2
Length = 851
Score = 38.2 bits (19), Expect = 6.0
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 280069 ttgtcgtagcgggtggcga 280087
|||||||||||||||||||
Sbjct: 776 ttgtcgtagcgggtggcga 758
>ISBrsp7
Length = 1292
Score = 38.2 bits (19), Expect = 6.0
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 102993 gttcgtgccgaccacccgc 103011
|||||||||||||||||||
Sbjct: 137 gttcgtgccgaccacccgc 155
Score = 38.2 bits (19), Expect = 6.0
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 244959 cgatctcgccctccagcag 244977
|||||||||||||||||||
Sbjct: 437 cgatctcgccctccagcag 419
>ISFsp12
Length = 1730
Score = 38.2 bits (19), Expect = 6.0
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 233769 ggcggcgagcagggcggtg 233787
|||||||||||||||||||
Sbjct: 1398 ggcggcgagcagggcggtg 1380
>ISMra5
Length = 832
Score = 38.2 bits (19), Expect = 6.0
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 280071 gtcgtagcgggtggcgatg 280089
|||||||||||||||||||
Sbjct: 759 gtcgtagcgggtggcgatg 741
>ISMno19
Length = 1138
Score = 38.2 bits (19), Expect = 6.0
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 196830 ggtcgttgacgatggccgacagg 196852
|||| ||||||||||||||||||
Sbjct: 127 ggtcattgacgatggccgacagg 105
>ISMno27
Length = 893
Score = 38.2 bits (19), Expect = 6.0
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 90017 tgcgccggttccgcaagcc 90035
|||||||||||||||||||
Sbjct: 313 tgcgccggttccgcaagcc 331
>ISMno35
Length = 894
Score = 38.2 bits (19), Expect = 6.0
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 90017 tgcgccggttccgcaagcc 90035
|||||||||||||||||||
Sbjct: 314 tgcgccggttccgcaagcc 332
>ISMno8
Length = 1466
Score = 38.2 bits (19), Expect = 6.0
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 123975 ctcgcggcgctgtcggacc 123993
|||||||||||||||||||
Sbjct: 396 ctcgcggcgctgtcggacc 414
>ISMtsp8
Length = 2371
Score = 38.2 bits (19), Expect = 6.0
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 274596 tcggtggcccgcgcgcggg 274614
|||||||||||||||||||
Sbjct: 320 tcggtggcccgcgcgcggg 302
Score = 38.2 bits (19), Expect = 6.0
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 126769 cgcgccggcgaccaggtcg 126787
|||||||||||||||||||
Sbjct: 1324 cgcgccggcgaccaggtcg 1342
>ISMch3
Length = 1510
Score = 38.2 bits (19), Expect = 6.0
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 125782 gagcagccgtggccggtgc 125800
|||||||||||||||||||
Sbjct: 1076 gagcagccgtggccggtgc 1058
>ISAar38
Length = 1010
Score = 38.2 bits (19), Expect = 6.0
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 269904 ccaccacccatcggaccccggcc 269926
|||||||||| ||||||||||||
Sbjct: 800 ccaccacccagcggaccccggcc 778
>ISCli1
Length = 1687
Score = 38.2 bits (19), Expect = 6.0
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 254477 cagcgcctgcgccgagggt 254495
|||||||||||||||||||
Sbjct: 688 cagcgcctgcgccgagggt 706
>ISStr1
Length = 1664
Score = 38.2 bits (19), Expect = 6.0
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 164286 cggcggtggccagctcgcc 164304
|||||||||||||||||||
Sbjct: 1361 cggcggtggccagctcgcc 1343
>ISMyma7
Length = 1694
Score = 38.2 bits (19), Expect = 6.0
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 165818 gccggggcggcgccggcgg 165836
|||||||||||||||||||
Sbjct: 517 gccggggcggcgccggcgg 499
>ISFsp15
Length = 1695
Score = 38.2 bits (19), Expect = 6.0
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 203496 ggaccgtctcggtgagcagcacg 203518
||||||||||||| |||||||||
Sbjct: 218 ggaccgtctcggtcagcagcacg 196
>ISFsp14
Length = 1696
Score = 38.2 bits (19), Expect = 6.0
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 203496 ggaccgtctcggtgagcagcacg 203518
||||||||||||| |||||||||
Sbjct: 218 ggaccgtctcggtcagcagcacg 196
>ISAzo1
Length = 1545
Score = 38.2 bits (19), Expect = 6.0
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 149349 cggcgcgcacgttgtcgag 149367
|||||||||||||||||||
Sbjct: 1352 cggcgcgcacgttgtcgag 1334
>ISAde2
Length = 1498
Score = 38.2 bits (19), Expect = 6.0
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 11431 ggcgggccggaacccaccg 11449
|||||||||||||||||||
Sbjct: 857 ggcgggccggaacccaccg 839
>ISMdi9
Length = 1399
Score = 38.2 bits (19), Expect = 6.0
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 102668 acctcatccgtacgcacga 102686
|||||||||||||||||||
Sbjct: 750 acctcatccgtacgcacga 732
>ISMsi5
Length = 1228
Score = 38.2 bits (19), Expect = 6.0
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 207353 gctgccgccgagcaccttg 207371
|||||||||||||||||||
Sbjct: 420 gctgccgccgagcaccttg 402
>ISMsi3
Length = 1107
Score = 38.2 bits (19), Expect = 6.0
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 90753 ctcgagctggcgcagccgc 90771
|||||||||||||||||||
Sbjct: 260 ctcgagctggcgcagccgc 242
>ISBps2
Length = 1233
Score = 38.2 bits (19), Expect = 6.0
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 85105 agctccttgacccggcgcgcgtc 85127
|||||||||| ||||||||||||
Sbjct: 274 agctccttgatccggcgcgcgtc 252
>ISMex35
Length = 1294
Score = 38.2 bits (19), Expect = 6.0
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 149086 ggcacgccgatgacgaggaacgtcgcc 149112
|||| ||||||| ||||||||||||||
Sbjct: 950 ggcaagccgatgccgaggaacgtcgcc 976
>ISMdi7
Length = 2568
Score = 38.2 bits (19), Expect = 6.0
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 171880 cggcccccgtcggcgacag 171898
|||||||||||||||||||
Sbjct: 2165 cggcccccgtcggcgacag 2147
>ISMex38
Length = 3841
Score = 38.2 bits (19), Expect = 6.0
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 123593 gctcgtggccgtggcggacggca 123615
||||||||||| |||||||||||
Sbjct: 2145 gctcgtggccggggcggacggca 2167
>ISMex18
Length = 1167
Score = 38.2 bits (19), Expect = 6.0
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 143851 ccgtcgaggcggtgcgcca 143869
|||||||||||||||||||
Sbjct: 311 ccgtcgaggcggtgcgcca 293
>ISAnsp5
Length = 2192
Score = 38.2 bits (19), Expect = 6.0
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 156788 tcggcgagcgcggcatcga 156806
|||||||||||||||||||
Sbjct: 364 tcggcgagcgcggcatcga 382
>ISMex22
Length = 3864
Score = 38.2 bits (19), Expect = 6.0
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 205936 tcgacgacgcggcccgtgt 205954
|||||||||||||||||||
Sbjct: 3665 tcgacgacgcggcccgtgt 3647
>ISMex1
Length = 1200
Score = 38.2 bits (19), Expect = 6.0
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 65703 cggcgctcgccggccaggc 65721
|||||||||||||||||||
Sbjct: 501 cggcgctcgccggccaggc 483
>ISCARN100
Length = 1111
Score = 38.2 bits (19), Expect = 6.0
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 89259 gtaggtcggagcggtgaca 89277
|||||||||||||||||||
Sbjct: 1041 gtaggtcggagcggtgaca 1023
>ISAzo38
Length = 894
Score = 38.2 bits (19), Expect = 6.0
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 72560 tcgcggcaaaggcggcgtc 72578
|||||||||||||||||||
Sbjct: 449 tcgcggcaaaggcggcgtc 467
>ISCARN82
Length = 892
Score = 38.2 bits (19), Expect = 6.0
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 126534 cgacgcgggcaagaaggtc 126552
|||||||||||||||||||
Sbjct: 470 cgacgcgggcaagaaggtc 488
>ISCARN28
Length = 1419
Score = 38.2 bits (19), Expect = 6.0
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 42658 agcgcccgcagcgccgcctcgac 42680
|||||||||||||||||| ||||
Sbjct: 810 agcgcccgcagcgccgccacgac 788
>ISCARN17
Length = 2539
Score = 38.2 bits (19), Expect = 6.0
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 270106 ccatggccgcctcgaaggccgcg 270128
|||||||||||||| ||||||||
Sbjct: 1520 ccatggccgcctcgcaggccgcg 1498
>ISAzca2
Length = 2458
Score = 38.2 bits (19), Expect = 6.0
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 3881 cagggcatcgcgctcgacc 3899
|||||||||||||||||||
Sbjct: 1507 cagggcatcgcgctcgacc 1525
>ISGdi12
Length = 1419
Score = 38.2 bits (19), Expect = 6.0
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 177827 gcccttggtgccacgtccggcgg 177849
|||||||||||| ||||||||||
Sbjct: 874 gcccttggtgccgcgtccggcgg 852
>ISAnsp3
Length = 2518
Score = 38.2 bits (19), Expect = 6.0
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 187235 ccgcatctcgaagtgctcg 187253
|||||||||||||||||||
Sbjct: 2002 ccgcatctcgaagtgctcg 1984
>ISThsp1
Length = 1539
Score = 38.2 bits (19), Expect = 6.0
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 226260 cgccaaggccaccgacgag 226278
|||||||||||||||||||
Sbjct: 596 cgccaaggccaccgacgag 614
>ISApr6
Length = 2479
Score = 38.2 bits (19), Expect = 6.0
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 231691 gccgcggatctccgcctcg 231709
|||||||||||||||||||
Sbjct: 2025 gccgcggatctccgcctcg 2007
>ISAli11
Length = 1739
Score = 38.2 bits (19), Expect = 6.0
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 6134 cgccggacccgaggggccg 6152
|||||||||||||||||||
Sbjct: 383 cgccggacccgaggggccg 365
>ISRhru2
Length = 1443
Score = 38.2 bits (19), Expect = 6.0
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 270838 cgagcgccggatggctgat 270856
|||||||||||||||||||
Sbjct: 331 cgagcgccggatggctgat 349
>ISFsp10
Length = 1713
Score = 38.2 bits (19), Expect = 6.0
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 178727 cgccgcggcggtcctgacg 178745
|||||||||||||||||||
Sbjct: 712 cgccgcggcggtcctgacg 730
>ISUnCu3
Length = 2596
Score = 38.2 bits (19), Expect = 6.0
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 180951 ttgacgacgccgggcacct 180969
|||||||||||||||||||
Sbjct: 2465 ttgacgacgccgggcacct 2483
>ISApr2
Length = 1029
Score = 38.2 bits (19), Expect = 6.0
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 254408 gacggtgagcggcagcttg 254426
|||||||||||||||||||
Sbjct: 339 gacggtgagcggcagcttg 321
>ISMtsp1
Length = 893
Score = 38.2 bits (19), Expect = 6.0
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 90017 tgcgccggttccgcaagcc 90035
|||||||||||||||||||
Sbjct: 313 tgcgccggttccgcaagcc 331
>ISMysp5
Length = 1117
Score = 38.2 bits (19), Expect = 6.0
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 9002 cagctcacggccgcaccac 9020
|||||||||||||||||||
Sbjct: 291 cagctcacggccgcaccac 309
>ISBad2
Length = 1470
Score = 38.2 bits (19), Expect = 6.0
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 88396 cgcggcggccgagcaggtc 88414
|||||||||||||||||||
Sbjct: 1239 cgcggcggccgagcaggtc 1257
>ISLsp1
Length = 1031
Score = 38.2 bits (19), Expect = 6.0
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 254408 gacggtgagcggcagcttg 254426
|||||||||||||||||||
Sbjct: 333 gacggtgagcggcagcttg 315
>ISGur1
Length = 1556
Score = 38.2 bits (19), Expect = 6.0
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 219522 tgatctcctcggcggtcaa 219540
|||||||||||||||||||
Sbjct: 1109 tgatctcctcggcggtcaa 1091
>ISMysp1
Length = 1461
Score = 38.2 bits (19), Expect = 6.0
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 263785 tcgacgagctggccgagcg 263803
|||||||||||||||||||
Sbjct: 383 tcgacgagctggccgagcg 401
>ISAcr1
Length = 1080
Score = 38.2 bits (19), Expect = 6.0
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 71416 cggctcgccaacgacgccg 71434
|||||||||||||||||||
Sbjct: 203 cggctcgccaacgacgccg 185
>ISTfu1
Length = 1743
Score = 38.2 bits (19), Expect = 6.0
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 120821 ccgggcgcggatgcgggcg 120839
|||||||||||||||||||
Sbjct: 1226 ccgggcgcggatgcgggcg 1208
>ISAzo3
Length = 1282
Score = 38.2 bits (19), Expect = 6.0
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 270110 ggccgcctcgaaggccgcg 270128
|||||||||||||||||||
Sbjct: 396 ggccgcctcgaaggccgcg 378
>ISMmg2
Length = 1380
Score = 38.2 bits (19), Expect = 6.0
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 66458 ggtcgacccgcggctgccg 66476
|||||||||||||||||||
Sbjct: 979 ggtcgacccgcggctgccg 997
>ISMlo3
Length = 1405
Score = 38.2 bits (19), Expect = 6.0
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 228926 ccaccgtgacgagacgcgc 228944
|||||||||||||||||||
Sbjct: 1037 ccaccgtgacgagacgcgc 1019
>ISPps1
Length = 1863
Score = 38.2 bits (19), Expect = 6.0
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 211510 gcccacgaggttgcggtacttca 211532
||||| |||||||||||||||||
Sbjct: 505 gcccaagaggttgcggtacttca 527
>IS987
Length = 1355
Score = 38.2 bits (19), Expect = 6.0
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 197953 gatcgcgtcgaggaccatg 197971
|||||||||||||||||||
Sbjct: 938 gatcgcgtcgaggaccatg 920
>IS986
Length = 1354
Score = 38.2 bits (19), Expect = 6.0
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 197953 gatcgcgtcgaggaccatg 197971
|||||||||||||||||||
Sbjct: 937 gatcgcgtcgaggaccatg 919
>IS6110
Length = 1354
Score = 38.2 bits (19), Expect = 6.0
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 197953 gatcgcgtcgaggaccatg 197971
|||||||||||||||||||
Sbjct: 937 gatcgcgtcgaggaccatg 919
>IS1650
Length = 898
Score = 38.2 bits (19), Expect = 6.0
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 280067 gtttgtcgtagcgggtggc 280085
|||||||||||||||||||
Sbjct: 819 gtttgtcgtagcgggtggc 801
>IS1547
Length = 1351
Score = 38.2 bits (19), Expect = 6.0
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 116753 ccggcacaccggcgagatcaaca 116775
||||| |||||||||||||||||
Sbjct: 866 ccggctcaccggcgagatcaaca 888
>IS1414
Length = 1314
Score = 38.2 bits (19), Expect = 6.0
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 128189 tcggtgaccgcctggacgg 128207
|||||||||||||||||||
Sbjct: 1253 tcggtgaccgcctggacgg 1271
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_6_length_279680_cov_83.7983_ID_5180
(279,680 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISMsm6 | IS1634 | Mycobacterium smegmatis | 100 | 2e-18 | |
| ISArsp6 | Tn3 | Arthrobacter sp. | 52 | 4e-04 | |
| IS466 | ISL3 | - | Streptomyces coelicolor | 48 | 0.006 |
| ISHvo3 | IS5 | ISH1 | Haloferax volcanii | 46 | 0.025 |
| ISMtsp7 | IS110 | IS1111 | Methylobacterium sp. | 46 | 0.025 |
| IS1557 | ISL3 | Mycobacterium tuberculosis | 46 | 0.025 | |
| ISNph26 | IS200/IS605 | IS1341 | Natronomonas pharaonis | 44 | 0.098 |
| ISRssp11 | IS5 | Roseovarius sp. | 44 | 0.098 | |
| ISNosp1 | IS1380 | Nocardioides sp. | 44 | 0.098 | |
| IS469 | ISL3 | - | Streptomyces coelicolor | 44 | 0.098 |
| ISHbo2 | IS200/IS605 | IS1341 | Halogeometricum borinquense | 42 | 0.39 |
| ISKra3 | ISAzo13 | Ktedonobacter racemifer | 42 | 0.39 | |
| ISAli14 | ISAs1 | Azospirillum lipoferum | 42 | 0.39 | |
| ISMsm2 | IS630 | Mycobacterium smegmatis | 42 | 0.39 | |
| ISBcen14 | IS66 | Burkholderia cenocepacia | 42 | 0.39 | |
| IS1650 | IS5 | IS427 | Streptomyces coelicolor | 42 | 0.39 |
| IS116 | IS110 | - | Streptomyces clavuligerus | 42 | 0.39 |
| ISRsp12 | Tn3 | Rhizhobium sp. | 40 | 1.5 | |
| ISMex44 | IS200/IS605 | IS1341 | Methylobacterium extorquens | 40 | 1.5 |
| ISHmu5 | IS200/IS605 | Halomicrobium mukohataei | 40 | 1.5 | |
| ISPebe1 | IS256 | Pelagibaca bermudensis | 40 | 1.5 | |
| ISPa43 | Tn3 | Pseudomonas aeruginosa | 40 | 1.5 | |
| ISNph5 | IS200/IS605 | Natronomonas pharaonis | 40 | 1.5 | |
| ISVsp8 | IS1380 | Verrucomicrobium spinosum | 40 | 1.5 | |
| ISBmu20 | IS5 | IS5 | Burkholderia multivorans | 40 | 1.5 |
| ISBj2_B | IS5 | IS5 | Bradyrhizobium japonicum | 40 | 1.5 |
| ISMtsp5 | IS3 | IS2 | Methylobacterium sp. | 40 | 1.5 |
| ISMno23 | IS91 | Methylobacterium nodulans | 40 | 1.5 | |
| ISVsp19 | IS1380 | Verrucomicrobium spinosum | 40 | 1.5 | |
| ISAzba6 | IS630 | Azospirillum brasilense | 40 | 1.5 | |
| ISAde1 | IS66 | Anaeromyxobacter dehalogenans | 40 | 1.5 | |
| ISNisp6 | IS66 | Nitrobacter sp. | 40 | 1.5 | |
| ISHs1 | ISH6 | Halobacterium salinarum | 40 | 1.5 | |
| ISH6 | ISH6 | Halobacterium salinarum | 40 | 1.5 | |
| IS1629 | ISAs1 | - | Streptomyces sp. | 40 | 1.5 |
| IS1549 | IS1634 | - | Mycobacterium smegmatis | 40 | 1.5 |
| IS117 | IS110 | - | Streptomyces coelicolor | 40 | 1.5 |
| IS1000B | IS110 | - | Thermus thermophilus | 40 | 1.5 |
| IS1000A | IS110 | - | Thermus thermophilus | 40 | 1.5 |
| ISMyin1 | ISNCY | ISDol1 | Mycobacterium indicus | 38 | 6.0 |
| ISHala3 | IS200/IS605 | IS1341 | Halobiforma lacisalsi | 38 | 6.0 |
| ISHti13 | IS4 | ISH8 | Halorhabdus tiamatea | 38 | 6.0 |
| ISHti11 | IS200/IS605 | IS1341 | Halorhabdus tiamatea | 38 | 6.0 |
| ISMpo4 | IS110 | IS1111 | Methylobacterium populi | 38 | 6.0 |
| ISMno16 | IS110 | IS1111 | Methylobacterium nodulans | 38 | 6.0 |
| ISHli5 | ISH3 | Halohasta litchfieldiae | 38 | 6.0 | |
| ISHla11 | ISH3 | Halorubrum lacusprofundi | 38 | 6.0 | |
| ISMfu2 | ISKra4 | ISKra4 | Myxococcus fulvus | 38 | 6.0 |
| ISTni2 | IS481 | Thioalkalivibrio nitratireducens | 38 | 6.0 | |
| ISGte1 | IS256 | Gordonia terrae | 38 | 6.0 | |
| ISStma17 | IS3 | IS51 | Stenotrophomonas maltophilia | 38 | 6.0 |
| ISAzs21 | IS66 | Azospirillum sp. | 38 | 6.0 | |
| ISAzs18 | IS66 | Azospirillum sp. | 38 | 6.0 | |
| ISAzs17 | Tn3 | Azospirillum sp. | 38 | 6.0 | |
| ISAzs2 | IS21 | Azospirillum sp. | 38 | 6.0 | |
| ISAnsp14 | IS256 | Anaeromyxobacter sp. | 38 | 6.0 | |
| ISUnCu14 | IS66 | Uncultured bacterium | 38 | 6.0 | |
| ISGeob4 | IS5 | ISL2 | Geodermatophilus obscurus | 38 | 6.0 |
| ISPha2 | IS5 | Paracoccus halophilus | 38 | 6.0 | |
| ISPkr1 | IS21 | Paracoccus koreensis | 38 | 6.0 | |
| ISRop2 | ISAzo13 | Rhodococcus opacus | 38 | 6.0 | |
| ISMno33 | IS1182 | Methylobacterium nodulans | 38 | 6.0 | |
| ISMno17 | IS1182 | Methylobacterium nodulans | 38 | 6.0 | |
| ISMtsp8 | IS21 | Methylobacterium sp. | 38 | 6.0 | |
| ISPfr1 | ISL3 | Propionibacterium freudenreichii | 38 | 6.0 | |
| ISAar30 | ISL3 | Arthrobacter arilaitensis | 38 | 6.0 | |
| ISCur1 | IS1380 | Corynebacterium urealyticum | 38 | 6.0 | |
| ISDeac1 | IS1380 | Delftia acidovorans | 38 | 6.0 | |
| ISApr10 | IS256 | Alpha proteobacterium | 38 | 6.0 | |
| ISAar8 | IS1380 | Arthrobacter arilaitensis | 38 | 6.0 | |
| ISAnsp9 | ISAs1 | Anaeromyxobacter sp. | 38 | 6.0 | |
| ISMdi27 | IS21 | Methylobacterium dichloromethanicum | 38 | 6.0 | |
| ISMsi1 | IS21 | Methylocella silvestris | 38 | 6.0 | |
| ISSav5 | IS481 | Streptomyces avermitilis | 38 | 6.0 | |
| ISMex22 | Tn3 | Methylobacterium extorquens | 38 | 6.0 | |
| ISRce1 | ISAs1 | Rhodospirillum centenum | 38 | 6.0 | |
| ISThsp12 | IS1634 | Thiomonas sp. | 38 | 6.0 | |
| ISPst10 | IS30 | Pseudomonas stutzeri | 38 | 6.0 | |
| ISAzo12 | IS21 | Azoarcus sp. | 38 | 6.0 | |
| ISSav7 | IS481 | Streptomyces avermitilis | 38 | 6.0 | |
| ISCARN23 | IS1634 | Metagenomic data from CARNOULES | 38 | 6.0 | |
| ISAli20 | Tn3 | Azospirillum lipoferum | 38 | 6.0 | |
| ISGdi14 | IS3 | IS51 | Gluconacetobacter diazotrophicus | 38 | 6.0 |
| ISDds6 | IS701 | Deinococcus deserti | 38 | 6.0 | |
| ISAli7 | IS256 | Azospirillum lipoferum | 38 | 6.0 | |
| ISAli6 | IS256 | Azospirillum lipoferum | 38 | 6.0 | |
| ISFsp11 | IS66 | ISBst12 | Frankia sp. | 38 | 6.0 |
| ISSce1 | IS1 | ISMhu11 | Sorangium cellulosum | 38 | 6.0 |
| ISNwi4 | IS1595 | ISNha5 | Nitrobacter winogradskyi | 38 | 6.0 |
| ISMpo2 | IS1595 | ISNwi1 | Methylobacterium populi | 38 | 6.0 |
| ISLxc1 | IS21 | Leifsonia xyli | 38 | 6.0 | |
| ISRpa3 | IS481 | Rhodopseudomonas palustris | 38 | 6.0 | |
| ISXac2 | IS3 | IS407 | Xanthomonas axonopodis | 38 | 6.0 |
| ISH19 | IS5 | ISH1 | Haloarcula marismortui | 38 | 6.0 |
| ISXax1 | IS256 | Xanthomonas axonopodis | 38 | 6.0 | |
| ISMyca1 | IS1634 | Mycobacterium canettii | 38 | 6.0 | |
| ISBmu3 | IS21 | Burkholderia multivorans | 38 | 6.0 | |
| ISBmu1 | IS21 | Burkholderia multivorans | 38 | 6.0 | |
| ISBlo9 | IS3 | IS150 | Bifidobacterium longum | 38 | 6.0 |
| ISBlo8 | IS256 | Bifidobacterium longum | 38 | 6.0 | |
| ISRso6 | IS21 | - | Ralstonia solanacearum | 38 | 6.0 |
| ISRo1 | IS256 | - | Rhodococcus opacus | 38 | 6.0 |
| ISRj1 | IS630 | - | Bradyrhizobium japonicum | 38 | 6.0 |
| ISPst1 | IS30 | - | Pseudomonas stutzeri | 38 | 6.0 |
| ISPpu7 | IS21 | - | Pseudomonas putida | 38 | 6.0 |
| ISPfl2 | IS30 | - | Pseudomonas fluorescens | 38 | 6.0 |
| ISH8B | IS4 | ISH8 | Halobacterium sp | 38 | 6.0 |
| IS999 | IS3 | IS51 | Mycobacterium avium | 38 | 6.0 |
| IS4811 | IS5 | IS1031 | Streptomyces lividans | 38 | 6.0 |
| IS1648 | IS5 | IS427 | Streptomyces coelicolor | 38 | 6.0 |
| ISSme3 | IS66 | Sinorhizobium medicae | 38 | 6.0 | |
| IS1491 | IS21 | - | Pseudomonas alcaligenes | 38 | 6.0 |
| IS1394 | IS30 | - | Pseudomonas alcaligenes | 38 | 6.0 |
| IS1246 | IS5 | IS5 | Pseudomonas putida | 38 | 6.0 |
| IS1136 | IS200/IS605 | IS1341 | Saccharopolyspora erythraea | 38 | 6.0 |
| IS1096 | ISL3 | - | Mycobacterium smegmatis | 38 | 6.0 |
>ISMsm6
Length = 1765
Score = 99.6 bits (50), Expect = 2e-18
Identities = 104/122 (85%)
Strand = Plus / Minus
Query: 36370 gtctcggccttgttcccctcgaagcagccgatctccagcgggaacccgcgccggtcgacc 36429
|||||||| |||| || ||||| ||||||||||||| |||||| ||| ||||| |||
Sbjct: 865 gtctcggcggtgttgccttcgaaacagccgatctccaacgggaatccggtgcggtccacc 806
Query: 36430 agcaggccgacgacgatctgagggtcgacccgacgctccttggagtagccgaccttgcgc 36489
| ||||||||| || || ||||| ||||||||||| |||||||||||||| |||||||||
Sbjct: 805 aacaggccgacaacaatttgaggatcgacccgacgttccttggagtagccaaccttgcgc 746
Query: 36490 ag 36491
||
Sbjct: 745 ag 744
Score = 69.9 bits (35), Expect = 2e-09
Identities = 62/71 (87%)
Strand = Plus / Minus
Query: 35674 gccagcgcggtgaacacgatggtcaggtgcgcctcgatcgcatcacgggtgcggtggaac 35733
||||| |||| |||||||||||||||||| |||||||| ||||| ||| | |||| ||||
Sbjct: 1567 gccagggcggcgaacacgatggtcaggtgggcctcgatggcatcgcggatccggttgaac 1508
Query: 35734 atgggccgggc 35744
|| ||||||||
Sbjct: 1507 ataggccgggc 1497
Score = 50.1 bits (25), Expect = 0.002
Identities = 46/53 (86%)
Strand = Plus / Minus
Query: 36705 ggtcggctccacgacccgggcaagcaccaggtcgcggaacaccacgtcgccga 36757
|||||||||||||| |||||| | ||||| ||||||||||| |||||||||
Sbjct: 530 ggtcggctccacgatccgggcgattaccagatcgcggaacactgcgtcgccga 478
Score = 40.1 bits (20), Expect = 1.5
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 36139 gtgatggtgtcgatgacctgcccgtcggtgaa 36170
|||| ||||||||||| ||| |||||||||||
Sbjct: 1102 gtgacggtgtcgatgatctgtccgtcggtgaa 1071
>ISArsp6
Length = 26712
Score = 52.0 bits (26), Expect = 4e-04
Identities = 47/54 (87%)
Strand = Plus / Plus
Query: 227581 tgggacccgaaggaggtctggaccttcgtcatctggaccgtctacgccgcctac 227634
|||||| | ||||| ||||||||||||||||||||| |||||||||| ||||
Sbjct: 10945 tgggacaccaaggaagtctggaccttcgtcatctgggtggtctacgccggctac 10998
Score = 44.1 bits (22), Expect = 0.098
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 225221 cagctgacgagcatgcgcacggcgctctttctcctgct 225258
||||||||||||||||| ||||| || ||||| |||||
Sbjct: 8471 cagctgacgagcatgcggacggcactttttctgctgct 8508
>IS466
Length = 1628
Score = 48.1 bits (24), Expect = 0.006
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 40190 acgccgtcgcccgcggcctcgagcgcgacaac 40221
||||| || |||||||||||||||||||||||
Sbjct: 1419 acgccttcacccgcggcctcgagcgcgacaac 1450
Score = 38.2 bits (19), Expect = 6.0
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 268648 aggagatcgcgatgtccgc 268666
|||||||||||||||||||
Sbjct: 1269 aggagatcgcgatgtccgc 1251
>ISHvo3
Length = 941
Score = 46.1 bits (23), Expect = 0.025
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 152857 tcggcctcgacacggccgatctc 152879
|||||||||||||||||||||||
Sbjct: 286 tcggcctcgacacggccgatctc 308
>ISMtsp7
Length = 1316
Score = 46.1 bits (23), Expect = 0.025
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 153573 gccaccttcgcggccctgctcga 153595
|||||||||||||||||||||||
Sbjct: 582 gccaccttcgcggccctgctcga 604
>IS1557
Length = 1509
Score = 46.1 bits (23), Expect = 0.025
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 60014 ccgtggtcgagggcggcgtcgacggcc 60040
|||||||||||||||||||||| ||||
Sbjct: 1312 ccgtggtcgagggcggcgtcgatggcc 1286
>ISNph26
Length = 1611
Score = 44.1 bits (22), Expect = 0.098
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 206973 gagaacgtccgtgaggtcgccc 206994
||||||||||||||||||||||
Sbjct: 1133 gagaacgtccgtgaggtcgccc 1112
>ISRssp11
Length = 1356
Score = 44.1 bits (22), Expect = 0.098
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 58879 gcgcagctcggcgacgatgtcggcgc 58904
||||||||||||||||| ||||||||
Sbjct: 1003 gcgcagctcggcgacgaagtcggcgc 978
>ISNosp1
Length = 1678
Score = 44.1 bits (22), Expect = 0.098
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 29108 acctcggcctcgctctcgccctgggtggcctcgg 29141
|||| ||||||||||||||| ||||||||||||
Sbjct: 265 accttggcctcgctctcgccgcgggtggcctcgg 298
>IS469
Length = 1647
Score = 44.1 bits (22), Expect = 0.098
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 172568 ccaccgccctgcgcctgcggcggcgc 172593
|||||||||||||||||| |||||||
Sbjct: 484 ccaccgccctgcgcctgctgcggcgc 509
>ISHbo2
Length = 1671
Score = 42.1 bits (21), Expect = 0.39
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 206973 gagaacgtccgtgaggtcgcc 206993
|||||||||||||||||||||
Sbjct: 1196 gagaacgtccgtgaggtcgcc 1176
>ISKra3
Length = 1287
Score = 42.1 bits (21), Expect = 0.39
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 149385 accggtctggcgatcaccgtc 149405
|||||||||||||||||||||
Sbjct: 953 accggtctggcgatcaccgtc 973
>ISAli14
Length = 1267
Score = 42.1 bits (21), Expect = 0.39
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 155853 aggcccggatcgccgagctcaccgc 155877
|||||||||||||||||| ||||||
Sbjct: 768 aggcccggatcgccgagcacaccgc 792
>ISMsm2
Length = 1126
Score = 42.1 bits (21), Expect = 0.39
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 138602 gaagatcgacgtcgaggtcgccgac 138626
||||||||||||||||||| |||||
Sbjct: 772 gaagatcgacgtcgaggtccccgac 796
>ISBcen14
Length = 2516
Score = 42.1 bits (21), Expect = 0.39
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 79749 cgccgggatcgatctcgacgc 79769
|||||||||||||||||||||
Sbjct: 1538 cgccgggatcgatctcgacgc 1518
>IS1650
Length = 898
Score = 42.1 bits (21), Expect = 0.39
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 239718 gccacccgctacgacaaacgc 239738
|||||||||||||||||||||
Sbjct: 801 gccacccgctacgacaaacgc 821
>IS116
Length = 1421
Score = 42.1 bits (21), Expect = 0.39
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 133358 ccgcgacatccgcgagaccttccgc 133382
|||||| ||||||||||||||||||
Sbjct: 974 ccgcgagatccgcgagaccttccgc 998
>ISRsp12
Length = 3701
Score = 40.1 bits (20), Expect = 1.5
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 174883 gcgcgagacggtcgagcttc 174902
||||||||||||||||||||
Sbjct: 401 gcgcgagacggtcgagcttc 420
>ISMex44
Length = 1270
Score = 40.1 bits (20), Expect = 1.5
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 87400 ccgcgacgtcgccgcggcgc 87419
||||||||||||||||||||
Sbjct: 1137 ccgcgacgtcgccgcggcgc 1156
Score = 38.2 bits (19), Expect = 6.0
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 222231 gtcgaggcggcgttcgccg 222249
|||||||||||||||||||
Sbjct: 607 gtcgaggcggcgttcgccg 625
>ISHmu5
Length = 1847
Score = 40.1 bits (20), Expect = 1.5
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 223500 ggcggtcatcgtctcgcacc 223519
||||||||||||||||||||
Sbjct: 682 ggcggtcatcgtctcgcacc 663
>ISPebe1
Length = 1363
Score = 40.1 bits (20), Expect = 1.5
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 137453 ggcgatcggggccgccgaggccga 137476
||||||||||||| ||||||||||
Sbjct: 681 ggcgatcggggcctccgaggccga 704
>ISPa43
Length = 19903
Score = 40.1 bits (20), Expect = 1.5
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 200131 ggcggccggcatcacgacgg 200150
||||||||||||||||||||
Sbjct: 12318 ggcggccggcatcacgacgg 12337
>ISNph5
Length = 1847
Score = 40.1 bits (20), Expect = 1.5
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 223500 ggcggtcatcgtctcgcacc 223519
||||||||||||||||||||
Sbjct: 682 ggcggtcatcgtctcgcacc 663
>ISVsp8
Length = 1802
Score = 40.1 bits (20), Expect = 1.5
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 64947 gcgcaccgcctcggcatcga 64966
||||||||||||||||||||
Sbjct: 1004 gcgcaccgcctcggcatcga 985
>ISBmu20
Length = 1158
Score = 40.1 bits (20), Expect = 1.5
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 237101 acatcggcgtggacgccgac 237120
||||||||||||||||||||
Sbjct: 598 acatcggcgtggacgccgac 617
>ISBj2_B
Length = 1509
Score = 40.1 bits (20), Expect = 1.5
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 206949 tgggtggctcggctcagcgg 206968
||||||||||||||||||||
Sbjct: 906 tgggtggctcggctcagcgg 887
>ISMtsp5
Length = 1347
Score = 40.1 bits (20), Expect = 1.5
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 203119 gcggatgaaacgctcggcgc 203138
||||||||||||||||||||
Sbjct: 1133 gcggatgaaacgctcggcgc 1114
>ISMno23
Length = 2271
Score = 40.1 bits (20), Expect = 1.5
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 156587 ccaggtgctgctcggccaca 156606
||||||||||||||||||||
Sbjct: 860 ccaggtgctgctcggccaca 879
>ISVsp19
Length = 1802
Score = 40.1 bits (20), Expect = 1.5
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 64947 gcgcaccgcctcggcatcga 64966
||||||||||||||||||||
Sbjct: 1004 gcgcaccgcctcggcatcga 985
>ISAzba6
Length = 1138
Score = 40.1 bits (20), Expect = 1.5
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 27841 gatgccgaccgccttggcca 27860
||||||||||||||||||||
Sbjct: 423 gatgccgaccgccttggcca 404
>ISAde1
Length = 2957
Score = 40.1 bits (20), Expect = 1.5
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 189606 acacggccgcagcggtcgcc 189625
||||||||||||||||||||
Sbjct: 343 acacggccgcagcggtcgcc 362
>ISNisp6
Length = 2489
Score = 40.1 bits (20), Expect = 1.5
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 269503 cgagcagcacgtcgccgcggtcggcgggggcg 269534
||||| ||||||||||||| |||||| |||||
Sbjct: 1901 cgagccgcacgtcgccgcgttcggcgagggcg 1870
>ISHs1
Length = 1449
Score = 40.1 bits (20), Expect = 1.5
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 231408 ttgccgagcaggctgccgag 231427
||||||||||||||||||||
Sbjct: 1168 ttgccgagcaggctgccgag 1187
>ISH6
Length = 1448
Score = 40.1 bits (20), Expect = 1.5
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 231408 ttgccgagcaggctgccgag 231427
||||||||||||||||||||
Sbjct: 1167 ttgccgagcaggctgccgag 1186
>IS1629
Length = 1462
Score = 40.1 bits (20), Expect = 1.5
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 228300 cagcgcggccaagcccgtca 228319
||||||||||||||||||||
Sbjct: 932 cagcgcggccaagcccgtca 951
>IS1549
Length = 1640
Score = 40.1 bits (20), Expect = 1.5
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 37076 cgatctgcaccgcagtcgctcccgacgcggtc 37107
|||||||||||||||| || ||||| ||||||
Sbjct: 167 cgatctgcaccgcagtggcccccgaagcggtc 136
>IS117
Length = 2527
Score = 40.1 bits (20), Expect = 1.5
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 39044 tgtcctcgacgatggcgacgtcgt 39067
|||| |||||||||||||||||||
Sbjct: 1682 tgtcgtcgacgatggcgacgtcgt 1705
>IS1000B
Length = 1196
Score = 40.1 bits (20), Expect = 1.5
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 21576 tgggcgagggcggcgaggag 21595
||||||||||||||||||||
Sbjct: 329 tgggcgagggcggcgaggag 310
>IS1000A
Length = 1196
Score = 40.1 bits (20), Expect = 1.5
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 21576 tgggcgagggcggcgaggag 21595
||||||||||||||||||||
Sbjct: 329 tgggcgagggcggcgaggag 310
>ISMyin1
Length = 1532
Score = 38.2 bits (19), Expect = 6.0
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 28569 cgccgggcagctcctggtc 28587
|||||||||||||||||||
Sbjct: 1255 cgccgggcagctcctggtc 1237
>ISHala3
Length = 1468
Score = 38.2 bits (19), Expect = 6.0
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 177574 catccgcgagaacatcgcc 177592
|||||||||||||||||||
Sbjct: 1044 catccgcgagaacatcgcc 1062
>ISHti13
Length = 1403
Score = 38.2 bits (19), Expect = 6.0
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 100040 cgcggcgaggacgccgacgactcccat 100066
|||| ||||||||||||||||| ||||
Sbjct: 929 cgcgacgaggacgccgacgactaccat 955
>ISHti11
Length = 1521
Score = 38.2 bits (19), Expect = 6.0
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 177574 catccgcgagaacatcgcc 177592
|||||||||||||||||||
Sbjct: 1039 catccgcgagaacatcgcc 1057
>ISMpo4
Length = 1767
Score = 38.2 bits (19), Expect = 6.0
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 183748 ccttcacgtggacctgcctgaac 183770
|||||||||||||||||| ||||
Sbjct: 470 ccttcacgtggacctgccggaac 448
>ISMno16
Length = 1404
Score = 38.2 bits (19), Expect = 6.0
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 36826 acgacccggcccgggccgtcccg 36848
|||||||||||||||||| ||||
Sbjct: 1078 acgacccggcccgggccggcccg 1100
>ISHli5
Length = 1377
Score = 38.2 bits (19), Expect = 6.0
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 220276 ggaggtcggcgacgacctc 220294
|||||||||||||||||||
Sbjct: 382 ggaggtcggcgacgacctc 364
>ISHla11
Length = 1376
Score = 38.2 bits (19), Expect = 6.0
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 220276 ggaggtcggcgacgacctc 220294
|||||||||||||||||||
Sbjct: 382 ggaggtcggcgacgacctc 364
>ISMfu2
Length = 1554
Score = 38.2 bits (19), Expect = 6.0
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 256330 ctccatcggcacggccacc 256348
|||||||||||||||||||
Sbjct: 748 ctccatcggcacggccacc 730
>ISTni2
Length = 3451
Score = 38.2 bits (19), Expect = 6.0
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 270652 gggcggcgacggcgagcag 270670
|||||||||||||||||||
Sbjct: 2987 gggcggcgacggcgagcag 2969
>ISGte1
Length = 1503
Score = 38.2 bits (19), Expect = 6.0
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 98562 ctcgatgcggttcgtgaac 98580
|||||||||||||||||||
Sbjct: 936 ctcgatgcggttcgtgaac 954
>ISStma17
Length = 1321
Score = 38.2 bits (19), Expect = 6.0
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 237249 cgccgaggtcgacgccggc 237267
|||||||||||||||||||
Sbjct: 209 cgccgaggtcgacgccggc 227
>ISAzs21
Length = 2598
Score = 38.2 bits (19), Expect = 6.0
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 168175 gcgaggaccgcgcccggca 168193
|||||||||||||||||||
Sbjct: 1393 gcgaggaccgcgcccggca 1411
>ISAzs18
Length = 2633
Score = 38.2 bits (19), Expect = 6.0
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 73798 accaggccggccttcgcggcggc 73820
|||||||||||||| ||||||||
Sbjct: 1109 accaggccggccttggcggcggc 1087
>ISAzs17
Length = 7252
Score = 38.2 bits (19), Expect = 6.0
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 26524 atcgcggcggtggccagggcctgcgcc 26550
||||| |||| ||||||||||||||||
Sbjct: 879 atcgcagcggcggccagggcctgcgcc 905
>ISAzs2
Length = 2609
Score = 38.2 bits (19), Expect = 6.0
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 258121 ctgatcatcggcccgaccgggat 258143
||||||| |||||||||||||||
Sbjct: 2008 ctgatcaccggcccgaccgggat 2030
>ISAnsp14
Length = 1629
Score = 38.2 bits (19), Expect = 6.0
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 237249 cgccgaggtcgacgccggc 237267
|||||||||||||||||||
Sbjct: 354 cgccgaggtcgacgccggc 372
>ISUnCu14
Length = 2442
Score = 38.2 bits (19), Expect = 6.0
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 153296 gctggcccccggtgaagga 153314
|||||||||||||||||||
Sbjct: 695 gctggcccccggtgaagga 713
>ISGeob4
Length = 982
Score = 38.2 bits (19), Expect = 6.0
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 20566 gtcgtctccgaggtcgagc 20584
|||||||||||||||||||
Sbjct: 599 gtcgtctccgaggtcgagc 617
>ISPha2
Length = 1387
Score = 38.2 bits (19), Expect = 6.0
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 85265 acggcagcggtggtgaggg 85283
|||||||||||||||||||
Sbjct: 59 acggcagcggtggtgaggg 77
>ISPkr1
Length = 2469
Score = 38.2 bits (19), Expect = 6.0
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 209883 gaggtcgacgagttcggcttcga 209905
||||||||||||||| |||||||
Sbjct: 1818 gaggtcgacgagttcagcttcga 1840
>ISRop2
Length = 2171
Score = 38.2 bits (19), Expect = 6.0
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 116274 cggcgaggagggcggcggc 116292
|||||||||||||||||||
Sbjct: 2113 cggcgaggagggcggcggc 2095
>ISMno33
Length = 1767
Score = 38.2 bits (19), Expect = 6.0
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 244913 cgaggtgatgcggctcgcg 244931
|||||||||||||||||||
Sbjct: 1064 cgaggtgatgcggctcgcg 1082
>ISMno17
Length = 1534
Score = 38.2 bits (19), Expect = 6.0
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 172590 gcgcgtcgaccgcgtcctc 172608
|||||||||||||||||||
Sbjct: 1365 gcgcgtcgaccgcgtcctc 1347
>ISMtsp8
Length = 2371
Score = 38.2 bits (19), Expect = 6.0
Identities = 28/31 (90%)
Strand = Plus / Plus
Query: 71733 cgatcagacccgcgtcgacgaggcgggtgag 71763
|||||||| |||| || ||||||||||||||
Sbjct: 1173 cgatcagatccgcatctacgaggcgggtgag 1203
Score = 38.2 bits (19), Expect = 6.0
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 57697 ccgcctcgaccccgagggc 57715
|||||||||||||||||||
Sbjct: 1824 ccgcctcgaccccgagggc 1806
>ISPfr1
Length = 1427
Score = 38.2 bits (19), Expect = 6.0
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 141678 cggcggccctcggcgagga 141696
|||||||||||||||||||
Sbjct: 559 cggcggccctcggcgagga 541
>ISAar30
Length = 1435
Score = 38.2 bits (19), Expect = 6.0
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 80755 ctccagaccgcggccgtcgaggc 80777
|||||||||| ||||||||||||
Sbjct: 190 ctccagaccgaggccgtcgaggc 168
>ISCur1
Length = 1627
Score = 38.2 bits (19), Expect = 6.0
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 103247 cagctcgtcctgccccgac 103265
|||||||||||||||||||
Sbjct: 1463 cagctcgtcctgccccgac 1481
>ISDeac1
Length = 1736
Score = 38.2 bits (19), Expect = 6.0
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 222521 ggccgaggtgatggcgctc 222539
|||||||||||||||||||
Sbjct: 1058 ggccgaggtgatggcgctc 1076
>ISApr10
Length = 1366
Score = 38.2 bits (19), Expect = 6.0
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 262815 ggcccaggcgctgctcgac 262833
|||||||||||||||||||
Sbjct: 686 ggcccaggcgctgctcgac 704
>ISAar8
Length = 1738
Score = 38.2 bits (19), Expect = 6.0
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 167783 tcacccacgcatcatcacg 167801
|||||||||||||||||||
Sbjct: 1022 tcacccacgcatcatcacg 1004
>ISAnsp9
Length = 1704
Score = 38.2 bits (19), Expect = 6.0
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 35334 cgccgggtcgtggatcggc 35352
|||||||||||||||||||
Sbjct: 88 cgccgggtcgtggatcggc 70
>ISMdi27
Length = 2476
Score = 38.2 bits (19), Expect = 6.0
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 31905 ggcggcctacgacgaggtcatca 31927
|||||||||||||||| ||||||
Sbjct: 1659 ggcggcctacgacgagatcatca 1681
>ISMsi1
Length = 2307
Score = 38.2 bits (19), Expect = 6.0
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 16757 cgccgccttggcgtcgacg 16775
|||||||||||||||||||
Sbjct: 1128 cgccgccttggcgtcgacg 1110
>ISSav5
Length = 1953
Score = 38.2 bits (19), Expect = 6.0
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 214486 ggacgcgctgctcgtcgag 214504
|||||||||||||||||||
Sbjct: 1570 ggacgcgctgctcgtcgag 1552
>ISMex22
Length = 3864
Score = 38.2 bits (19), Expect = 6.0
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 245283 gggctcggcttcgccttcg 245301
|||||||||||||||||||
Sbjct: 3160 gggctcggcttcgccttcg 3178
>ISRce1
Length = 1267
Score = 38.2 bits (19), Expect = 6.0
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 80805 cgacttcgtcgccatcgac 80823
|||||||||||||||||||
Sbjct: 424 cgacttcgtcgccatcgac 442
>ISThsp12
Length = 2004
Score = 38.2 bits (19), Expect = 6.0
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 197928 gtcgaggtcgccggcgagg 197946
|||||||||||||||||||
Sbjct: 753 gtcgaggtcgccggcgagg 771
>ISPst10
Length = 1113
Score = 38.2 bits (19), Expect = 6.0
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 121691 cgatctatgccgtgccggtcggc 121713
||||||||||| |||||||||||
Sbjct: 420 cgatctatgccctgccggtcggc 442
>ISAzo12
Length = 3075
Score = 38.2 bits (19), Expect = 6.0
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 109753 gccagctcggcgtcctcgg 109771
|||||||||||||||||||
Sbjct: 454 gccagctcggcgtcctcgg 436
>ISSav7
Length = 2992
Score = 38.2 bits (19), Expect = 6.0
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 47918 cccaggacctcgccgacctcggc 47940
|||||||||||||||||| ||||
Sbjct: 1115 cccaggacctcgccgaccgcggc 1137
Score = 38.2 bits (19), Expect = 6.0
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 248933 cttcgacaccgtcgccgag 248951
|||||||||||||||||||
Sbjct: 1611 cttcgacaccgtcgccgag 1629
Score = 38.2 bits (19), Expect = 6.0
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 243017 ttcgacaccgtcgccgaga 243035
|||||||||||||||||||
Sbjct: 1612 ttcgacaccgtcgccgaga 1630
>ISCARN23
Length = 1907
Score = 38.2 bits (19), Expect = 6.0
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 110595 gtcgaaggcgccgtgggcg 110613
|||||||||||||||||||
Sbjct: 465 gtcgaaggcgccgtgggcg 447
>ISAli20
Length = 3828
Score = 38.2 bits (19), Expect = 6.0
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 217794 gacacgcgcctgcgcctcg 217812
|||||||||||||||||||
Sbjct: 1545 gacacgcgcctgcgcctcg 1527
>ISGdi14
Length = 1318
Score = 38.2 bits (19), Expect = 6.0
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 41780 gccaggcggcgagcgggac 41798
|||||||||||||||||||
Sbjct: 216 gccaggcggcgagcgggac 234
>ISDds6
Length = 2207
Score = 38.2 bits (19), Expect = 6.0
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 36340 aactgccggatgatcggga 36358
|||||||||||||||||||
Sbjct: 2120 aactgccggatgatcggga 2102
>ISAli7
Length = 1416
Score = 38.2 bits (19), Expect = 6.0
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 231170 cagcatctgcagcatcgtctcgg 231192
|||||||||||||| ||||||||
Sbjct: 249 cagcatctgcagcaccgtctcgg 227
>ISAli6
Length = 1437
Score = 38.2 bits (19), Expect = 6.0
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 61226 cacctcggtgcgtcgcttg 61244
|||||||||||||||||||
Sbjct: 1201 cacctcggtgcgtcgcttg 1183
>ISFsp11
Length = 1836
Score = 38.2 bits (19), Expect = 6.0
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 4760 gctcggggtgccggtgtcg 4778
|||||||||||||||||||
Sbjct: 858 gctcggggtgccggtgtcg 876
Score = 38.2 bits (19), Expect = 6.0
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 122716 ggcgagccggcgggccagg 122734
|||||||||||||||||||
Sbjct: 1509 ggcgagccggcgggccagg 1491
>ISSce1
Length = 4601
Score = 38.2 bits (19), Expect = 6.0
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 202056 gccgccggctgcggcgacc 202074
|||||||||||||||||||
Sbjct: 3106 gccgccggctgcggcgacc 3124
>ISNwi4
Length = 3671
Score = 38.2 bits (19), Expect = 6.0
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 136776 gatgatgcggcggcggtcg 136794
|||||||||||||||||||
Sbjct: 1681 gatgatgcggcggcggtcg 1663
>ISMpo2
Length = 3089
Score = 38.2 bits (19), Expect = 6.0
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 198771 gaccgtcgcggcctcgccg 198789
|||||||||||||||||||
Sbjct: 2891 gaccgtcgcggcctcgccg 2873
>ISLxc1
Length = 3533
Score = 38.2 bits (19), Expect = 6.0
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 199699 tgacgagcagcgccggatc 199717
|||||||||||||||||||
Sbjct: 1902 tgacgagcagcgccggatc 1920
>ISRpa3
Length = 1261
Score = 38.2 bits (19), Expect = 6.0
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 94868 cgcctcggcgaggtcgcgc 94886
|||||||||||||||||||
Sbjct: 886 cgcctcggcgaggtcgcgc 868
>ISXac2
Length = 1195
Score = 38.2 bits (19), Expect = 6.0
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 155846 gagcagaaggcccggatcgccga 155868
|||||||| ||||||||||||||
Sbjct: 459 gagcagaacgcccggatcgccga 481
>ISH19
Length = 936
Score = 38.2 bits (19), Expect = 6.0
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 152857 tcggcctcgacacggccgatctc 152879
||||||||||| |||||||||||
Sbjct: 287 tcggcctcgacgcggccgatctc 309
>ISXax1
Length = 1329
Score = 38.2 bits (19), Expect = 6.0
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 164986 gcaccatgtgcacgatgca 165004
|||||||||||||||||||
Sbjct: 862 gcaccatgtgcacgatgca 844
>ISMyca1
Length = 1968
Score = 38.2 bits (19), Expect = 6.0
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 36529 acgtcatagagcaccaggg 36547
|||||||||||||||||||
Sbjct: 702 acgtcatagagcaccaggg 684
Score = 38.2 bits (19), Expect = 6.0
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 218224 agatcctgctcgaggacgg 218242
|||||||||||||||||||
Sbjct: 1023 agatcctgctcgaggacgg 1041
>ISBmu3
Length = 2697
Score = 38.2 bits (19), Expect = 6.0
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 105636 atggtcgtcgagcgcgagc 105654
|||||||||||||||||||
Sbjct: 1973 atggtcgtcgagcgcgagc 1991
>ISBmu1
Length = 2581
Score = 38.2 bits (19), Expect = 6.0
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 94345 gctgcgcgccggcttcgcg 94363
|||||||||||||||||||
Sbjct: 1890 gctgcgcgccggcttcgcg 1908
>ISBlo9
Length = 1226
Score = 38.2 bits (19), Expect = 6.0
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 59218 cagcatcgccggccacggc 59236
|||||||||||||||||||
Sbjct: 805 cagcatcgccggccacggc 823
>ISBlo8
Length = 1408
Score = 38.2 bits (19), Expect = 6.0
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 267806 cgtcggggaagtgggcgcgggcg 267828
|||||||||||||| ||||||||
Sbjct: 1220 cgtcggggaagtggccgcgggcg 1198
>ISRso6
Length = 2064
Score = 38.2 bits (19), Expect = 6.0
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 89324 tcgaacggctcaccgtcct 89342
|||||||||||||||||||
Sbjct: 1158 tcgaacggctcaccgtcct 1176
>ISRo1
Length = 1474
Score = 38.2 bits (19), Expect = 6.0
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 210217 gcggccacctcgtcggggt 210235
|||||||||||||||||||
Sbjct: 1015 gcggccacctcgtcggggt 997
>ISRj1
Length = 1122
Score = 38.2 bits (19), Expect = 6.0
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 233224 gatcgaccgggtgctgcgc 233242
|||||||||||||||||||
Sbjct: 194 gatcgaccgggtgctgcgc 176
>ISPst1
Length = 1113
Score = 38.2 bits (19), Expect = 6.0
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 121691 cgatctatgccgtgccggtcggc 121713
||||||||||| |||||||||||
Sbjct: 420 cgatctatgccttgccggtcggc 442
>ISPpu7
Length = 2598
Score = 38.2 bits (19), Expect = 6.0
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 36421 cggtcgaccagcaggccga 36439
|||||||||||||||||||
Sbjct: 1873 cggtcgaccagcaggccga 1855
>ISPfl2
Length = 1081
Score = 38.2 bits (19), Expect = 6.0
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 121691 cgatctatgccgtgccggtcggc 121713
||||||||||| |||||||||||
Sbjct: 388 cgatctatgccctgccggtcggc 410
>ISH8B
Length = 1403
Score = 38.2 bits (19), Expect = 6.0
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 100040 cgcggcgaggacgccgacgactcccat 100066
|||| ||||||||||||||||| ||||
Sbjct: 929 cgcgacgaggacgccgacgactaccat 955
>IS999
Length = 1347
Score = 38.2 bits (19), Expect = 6.0
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 83035 gccgaggagaaggccgccg 83053
|||||||||||||||||||
Sbjct: 103 gccgaggagaaggccgccg 121
>IS4811
Length = 5396
Score = 38.2 bits (19), Expect = 6.0
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 221916 ggcttctccttcggcaccc 221934
|||||||||||||||||||
Sbjct: 4702 ggcttctccttcggcaccc 4720
>IS1648
Length = 969
Score = 38.2 bits (19), Expect = 6.0
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 176360 ccgggtcttgcgggcgccg 176378
|||||||||||||||||||
Sbjct: 411 ccgggtcttgcgggcgccg 393
>ISSme3
Length = 3149
Score = 38.2 bits (19), Expect = 6.0
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 277096 gcctgcgccaactcgggcg 277114
|||||||||||||||||||
Sbjct: 521 gcctgcgccaactcgggcg 503
Score = 38.2 bits (19), Expect = 6.0
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 14996 cgagcgcctcggcgacggc 15014
|||||||||||||||||||
Sbjct: 3038 cgagcgcctcggcgacggc 3020
>IS1491
Length = 2481
Score = 38.2 bits (19), Expect = 6.0
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 36421 cggtcgaccagcaggccga 36439
|||||||||||||||||||
Sbjct: 1803 cggtcgaccagcaggccga 1785
>IS1394
Length = 1100
Score = 38.2 bits (19), Expect = 6.0
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 121691 cgatctatgccgtgccggtcggc 121713
||||||||||| |||||||||||
Sbjct: 419 cgatctatgccctgccggtcggc 441
>IS1246
Length = 1275
Score = 38.2 bits (19), Expect = 6.0
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 60094 gaccttggcgccggcgtcgtcgatgcg 60120
|||||| |||||||||||| |||||||
Sbjct: 449 gaccttcgcgccggcgtcgccgatgcg 423
>IS1136
Length = 1402
Score = 38.2 bits (19), Expect = 6.0
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 65219 tcggggtcgtcggtgtcca 65237
|||||||||||||||||||
Sbjct: 640 tcggggtcgtcggtgtcca 622
>IS1096
Length = 2259
Score = 38.2 bits (19), Expect = 6.0
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 6783 cgctgtcctcgacgacacc 6801
|||||||||||||||||||
Sbjct: 1787 cgctgtcctcgacgacacc 1805
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_7_length_196303_cov_102.021_ID_5182
(196,303 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISArsp6 | Tn3 | Arthrobacter sp. | 52 | 3e-04 | |
| ISAzs37 | IS630 | Azospirillum sp. | 46 | 0.017 | |
| ISMsi1 | IS21 | Methylocella silvestris | 44 | 0.069 | |
| ISApr2 | IS1595 | ISSod11 | Alpha proteobacterium | 44 | 0.069 |
| TnAs3 | Tn3 | Aeromonas salmonicida | 42 | 0.27 | |
| ISNamo22 | IS200/IS605 | IS1341 | Natronomonas moolapensis | 42 | 0.27 |
| TnAs2 | Tn3 | Aeromonas salmonicida | 42 | 0.27 | |
| ISAzs36 | IS481 | Azospirillum sp. | 42 | 0.27 | |
| ISCpo1 | ISNCY | ISDol1 | Candidatus Poribacteria sp. | 42 | 0.27 |
| ISPaen1 | IS1380 | Paenibacillus sp. | 42 | 0.27 | |
| ISAzo1 | IS1182 | Azoarcus sp. | 42 | 0.27 | |
| ISSav5 | IS481 | Streptomyces avermitilis | 42 | 0.27 | |
| ISAisp4 | IS110 | Acidovorax sp. | 42 | 0.27 | |
| ISScl1 | IS5 | IS1031 | Streptomyces clavuligerus | 42 | 0.27 |
| ISPa42 | Tn3 | Pseudomonas aeruginosa | 42 | 0.27 | |
| ISGrh1 | ISNCY | ISDol1 | Gordonia rhizosphera | 40 | 1.1 |
| ISMno29 | IS110 | Methylobacterium nodulans | 40 | 1.1 | |
| ISMpo4 | IS110 | IS1111 | Methylobacterium populi | 40 | 1.1 |
| TnAs1 | Tn3 | Aeromonas salmonicida | 40 | 1.1 | |
| ISHbo5 | IS200/IS605 | IS605 | Halogeometricum borinquense | 40 | 1.1 |
| ISPa40 | Tn3 | Pseudomonas aeruginosa | 40 | 1.1 | |
| ISPa38 | Tn3 | Pseudomonas aeruginosa | 40 | 1.1 | |
| ISStsp6 | IS5 | ISL2 | Streptomyces sp | 40 | 1.1 |
| ISGeob1 | IS5 | ISL2 | Geodermatophilus obscurus | 40 | 1.1 |
| ISShes11 | Tn3 | Shewanella sp. | 40 | 1.1 | |
| ISMtsp5 | IS3 | IS2 | Methylobacterium sp. | 40 | 1.1 |
| ISMpo6 | IS1182 | Methylobacterium populi | 40 | 1.1 | |
| ISAnsp11 | IS3 | IS3 | Anaeromyxobacter sp. | 40 | 1.1 |
| ISThsp9 | Tn3 | Thiomonas sp. | 40 | 1.1 | |
| ISAli6 | IS256 | Azospirillum lipoferum | 40 | 1.1 | |
| ISCku7 | IS66 | ISBst12 | Candidatus Kuenenia stuttgartiensis | 40 | 1.1 |
| ISAau4 | Tn3 | Arthrobacter aurescens | 40 | 1.1 | |
| ISSme2 | IS21 | Sinorhizobium medicae | 40 | 1.1 | |
| ISLxx3 | IS21 | Leifsonia xyli | 40 | 1.1 | |
| IS117 | IS110 | - | Streptomyces coelicolor | 40 | 1.1 |
| TnXo19 | Tn3 | Xanthomonas oryzae | 38 | 4.2 | |
| ISRel10 | ISNCY | IS1202 | Rhizobium etli | 38 | 4.2 |
| ISMex44 | IS200/IS605 | IS1341 | Methylobacterium extorquens | 38 | 4.2 |
| ISHaru3 | IS200/IS605 | IS1341 | Halobellus rufus | 38 | 4.2 |
| ISHla15 | IS200/IS605 | Halorubrum lacusprofundi | 38 | 4.2 | |
| ISHti3 | IS200/IS605 | IS1341 | Halorhabdus tiamatea | 38 | 4.2 |
| ISHarch3 | IS200/IS605 | IS1341 | Halophilic archaeon | 38 | 4.2 |
| ISAs30 | IS4 | IS4 | Aeromonas salmonicida | 38 | 4.2 |
| ISHhu5 | IS200/IS605 | IS1341 | Halobacterium hubeiense | 38 | 4.2 |
| ISHhu4 | IS200/IS605 | IS1341 | Halobacterium hubeiense | 38 | 4.2 |
| ISHvo17 | IS200/IS605 | IS1341 | Haloferax volcanii | 38 | 4.2 |
| ISTni1 | ISKra4 | ISKra4 | Thioalkalivibrio nitratireducens | 38 | 4.2 |
| ISNov1 | ISKra4 | ISAzba1 | Novosphingobium sp. | 38 | 4.2 |
| ISRba9 | IS256 | Rhodopirellula baltica | 38 | 4.2 | |
| ISRso21 | ISL3 | Ralstonia solanacearum | 38 | 4.2 | |
| ISMesi1 | IS3 | IS150 | Meiothermus silvanus | 38 | 4.2 |
| ISAzs11 | ISAs1 | Azospirillum sp. | 38 | 4.2 | |
| ISGeob2 | IS5 | ISL2 | Geodermatophilus obscurus | 38 | 4.2 |
| ISSar1 | IS5 | ISL2 | Salinispora arenicola | 38 | 4.2 |
| ISMtsp10 | IS1182 | Methylobacterium sp. | 38 | 4.2 | |
| ISHwa15 | ISNCY | Haloquadratum walsbyi | 38 | 4.2 | |
| ISEc32 | IS110 | Escherichia coli | 38 | 4.2 | |
| ISMno22 | IS110 | IS1111 | Methylobacterium nodulans | 38 | 4.2 |
| ISFsp13 | ISAzo13 | Frankia sp. | 38 | 4.2 | |
| ISFsp12 | ISAzo13 | Frankia sp. | 38 | 4.2 | |
| ISSpma3 | IS3 | IS407 | Sphingopyxis macrogoltabida | 38 | 4.2 |
| ISRhru3 | IS110 | IS1111 | Rhodospirillum rubrum | 38 | 4.2 |
| ISMno13 | IS66 | Methylobacterium nodulans | 38 | 4.2 | |
| ISMch6 | IS110 | Methylobacterium chloromethanicum | 38 | 4.2 | |
| ISPfr18 | ISL3 | Propionibacterium freudenreichii | 38 | 4.2 | |
| ISPfr3 | ISL3 | Propionibacterium freudenreichii | 38 | 4.2 | |
| ISStr1 | IS1380 | Salinispora tropica | 38 | 4.2 | |
| ISCef6 | IS1380 | Corynebacterium efficiens | 38 | 4.2 | |
| ISAcr5 | IS1380 | Acidiphilium cryptum | 38 | 4.2 | |
| ISAcr4 | IS1380 | Acidiphilium cryptum | 38 | 4.2 | |
| ISRsp7 | IS1380 | Rhizobium sp. | 38 | 4.2 | |
| ISMex33 | IS3 | IS51 | Methylobacterium extorquens | 38 | 4.2 |
| ISMex35 | IS5 | IS5 | Methylobacterium extorquens | 38 | 4.2 |
| ISMdi2 | ISL3 | Methylobacterium dichloromethanicum | 38 | 4.2 | |
| ISMex36 | IS1182 | Methylobacterium extorquens | 38 | 4.2 | |
| ISMex14 | IS256 | Methylobacterium extorquens | 38 | 4.2 | |
| ISMex22 | Tn3 | Methylobacterium extorquens | 38 | 4.2 | |
| ISAzo41 | IS5 | IS5 | Azoarcus sp. | 38 | 4.2 |
| ISAzo29 | ISAs1 | Azoarcus sp. | 38 | 4.2 | |
| ISCARN68 | IS256 | Metagenomic data from CARNOULES | 38 | 4.2 | |
| ISAzo15 | IS66 | Azoarcus sp. | 38 | 4.2 | |
| ISAzca2 | IS66 | Azorhizobium caulinodans | 38 | 4.2 | |
| ISThsp1 | IS1182 | Thiomonas sp. | 38 | 4.2 | |
| ISRhru2 | IS66 | ISBst12 | Rhodospirillum rubrum | 38 | 4.2 |
| ISSce1 | IS1 | ISMhu11 | Sorangium cellulosum | 38 | 4.2 |
| ISSam1 | IS110 | Streptomyces ambofaciens | 38 | 4.2 | |
| ISRhba2 | IS3 | IS3 | Rhodobacterales bacterium | 38 | 4.2 |
| ISRhosp3 | IS701 | Rhodococcus sp. | 38 | 4.2 | |
| ISRhosp4 | IS701 | Rhodococcus sp. | 38 | 4.2 | |
| ISAzvi6 | IS4 | IS4 | Azotobacter vinelandii | 38 | 4.2 |
| ISMyma1 | IS3 | IS407 | Mycobacterium marinum | 38 | 4.2 |
| ISBcen14 | IS66 | Burkholderia cenocepacia | 38 | 4.2 | |
| ISBmu2 | IS5 | IS5 | Burkholderia multivorans | 38 | 4.2 |
| ISLxx1 | IS21 | Leifsonia xyli | 38 | 4.2 | |
| ISBlo5 | IS256 | Bifidobacterium longum | 38 | 4.2 | |
| ISSco3 | IS5 | IS1031 | Streptomyces coelicolor | 38 | 4.2 |
| ISMav2 | IS481 | - | Mycobacterium avium | 38 | 4.2 |
| IS999 | IS3 | IS51 | Mycobacterium avium | 38 | 4.2 |
| IS468A | IS5 | IS1031 | Streptomyces coelicolor | 38 | 4.2 |
| IS1632 | IS256 | - | Bradyrhizobium japonicum | 38 | 4.2 |
| IS1394 | IS30 | - | Pseudomonas alcaligenes | 38 | 4.2 |
| IS1137 | IS3 | IS51 | Mycobacterium smegmatis | 38 | 4.2 |
| IS1096 | ISL3 | - | Mycobacterium smegmatis | 38 | 4.2 |
| IS1066 | IS630 | - | Pseudomonas sp. | 38 | 4.2 |
>ISArsp6
Length = 26712
Score = 52.0 bits (26), Expect = 3e-04
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 180561 cgccatggtcggcgacggggtcaacgacgccgcggccctggc 180602
|||||||||||| ||||| || ||||||||| ||||||||||
Sbjct: 4161 cgccatggtcggggacggcgtgaacgacgccccggccctggc 4120
Score = 44.1 bits (22), Expect = 0.069
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 175555 gcgacgatggcccgggcgatcgggtggtcgctgc 175588
|||| |||||||||||||| |||||| |||||||
Sbjct: 4573 gcgaggatggcccgggcgagcgggtgttcgctgc 4606
Score = 40.1 bits (20), Expect = 1.1
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 169749 tgctcctcgaccaggaccgc 169768
||||||||||||||||||||
Sbjct: 4390 tgctcctcgaccaggaccgc 4409
>ISAzs37
Length = 1058
Score = 46.1 bits (23), Expect = 0.017
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 116939 cagcagcgtgatgacgtcgtcga 116961
|||||||||||||||||||||||
Sbjct: 467 cagcagcgtgatgacgtcgtcga 489
>ISMsi1
Length = 2307
Score = 44.1 bits (22), Expect = 0.069
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 30245 tcaggctgccgagcagcgggta 30266
||||||||||||||||||||||
Sbjct: 1554 tcaggctgccgagcagcgggta 1533
>ISApr2
Length = 1029
Score = 44.1 bits (22), Expect = 0.069
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 136374 ggagtgatggcgacgccgatgccgag 136399
||||||||||||||||||||| ||||
Sbjct: 983 ggagtgatggcgacgccgatggcgag 958
>TnAs3
Length = 18735
Score = 42.1 bits (21), Expect = 0.27
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 178657 atcaccggcatgacgtgcgcctcgtgcgc 178685
|||||||||||||| |||| |||||||||
Sbjct: 1704 atcaccggcatgacttgcgactcgtgcgc 1732
Score = 40.1 bits (20), Expect = 1.1
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 131307 tgcggatcgaggagcactac 131326
||||||||||||||||||||
Sbjct: 17969 tgcggatcgaggagcactac 17988
>ISNamo22
Length = 1706
Score = 42.1 bits (21), Expect = 0.27
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 147864 cctcgaagccgccctcgtcgt 147884
|||||||||||||||||||||
Sbjct: 460 cctcgaagccgccctcgtcgt 440
>TnAs2
Length = 8650
Score = 42.1 bits (21), Expect = 0.27
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 178657 atcaccggcatgacgtgcgcctcgtgcgc 178685
|||||||||||||| |||| |||||||||
Sbjct: 1683 atcaccggcatgacttgcgactcgtgcgc 1711
>ISAzs36
Length = 2622
Score = 42.1 bits (21), Expect = 0.27
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 92514 acgacgccggcgaccgccacc 92534
|||||||||||||||||||||
Sbjct: 1794 acgacgccggcgaccgccacc 1774
>ISCpo1
Length = 1918
Score = 42.1 bits (21), Expect = 0.27
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 77547 gcgttcgcggcggcgcgccgg 77567
|||||||||||||||||||||
Sbjct: 1445 gcgttcgcggcggcgcgccgg 1465
>ISPaen1
Length = 1851
Score = 42.1 bits (21), Expect = 0.27
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 93291 cgacatcgacgacaccgtcatcacg 93315
||||||||||||||| |||||||||
Sbjct: 674 cgacatcgacgacacggtcatcacg 698
>ISAzo1
Length = 1545
Score = 42.1 bits (21), Expect = 0.27
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 76659 ggcggccgcgatggcgggcagccgg 76683
||||||||||||||||| |||||||
Sbjct: 676 ggcggccgcgatggcggccagccgg 652
>ISSav5
Length = 1953
Score = 42.1 bits (21), Expect = 0.27
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 121963 gacgcgctgctcgtcgaggac 121983
|||||||||||||||||||||
Sbjct: 1569 gacgcgctgctcgtcgaggac 1549
>ISAisp4
Length = 1614
Score = 42.1 bits (21), Expect = 0.27
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 143524 cgggcgatgcgctgctcgatc 143544
|||||||||||||||||||||
Sbjct: 1016 cgggcgatgcgctgctcgatc 996
>ISScl1
Length = 1099
Score = 42.1 bits (21), Expect = 0.27
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 53712 ggcgttctcggagaggccggc 53732
|||||||||||||||||||||
Sbjct: 721 ggcgttctcggagaggccggc 701
>ISPa42
Length = 16941
Score = 42.1 bits (21), Expect = 0.27
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 179808 cgcggccgtcgccgtcctcat 179828
|||||||||||||||||||||
Sbjct: 15606 cgcggccgtcgccgtcctcat 15586
>ISGrh1
Length = 1673
Score = 40.1 bits (20), Expect = 1.1
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 77563 gccggctcggcaagccggtc 77582
||||||||||||||||||||
Sbjct: 1074 gccggctcggcaagccggtc 1093
Score = 38.2 bits (19), Expect = 4.2
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 84558 ccggcgccaccccggacggggcc 84580
|||||| ||||||||||||||||
Sbjct: 1002 ccggcgacaccccggacggggcc 1024
>ISMno29
Length = 1192
Score = 40.1 bits (20), Expect = 1.1
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 69235 tcgccgcggacatcgaggcc 69254
||||||||||||||||||||
Sbjct: 711 tcgccgcggacatcgaggcc 730
>ISMpo4
Length = 1767
Score = 40.1 bits (20), Expect = 1.1
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 139062 agcacgtcgaggatggcggc 139081
||||||||||||||||||||
Sbjct: 672 agcacgtcgaggatggcggc 653
>TnAs1
Length = 6694
Score = 40.1 bits (20), Expect = 1.1
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 131307 tgcggatcgaggagcactac 131326
||||||||||||||||||||
Sbjct: 5928 tgcggatcgaggagcactac 5947
Score = 38.2 bits (19), Expect = 4.2
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 175029 ggtctgctgggccagctcg 175047
|||||||||||||||||||
Sbjct: 4099 ggtctgctgggccagctcg 4081
>ISHbo5
Length = 2038
Score = 40.1 bits (20), Expect = 1.1
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 129324 cgaggagacggtccgccacg 129343
||||||||||||||||||||
Sbjct: 1753 cgaggagacggtccgccacg 1772
>ISPa40
Length = 6592
Score = 40.1 bits (20), Expect = 1.1
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 131307 tgcggatcgaggagcactac 131326
||||||||||||||||||||
Sbjct: 5826 tgcggatcgaggagcactac 5845
Score = 38.2 bits (19), Expect = 4.2
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 175029 ggtctgctgggccagctcg 175047
|||||||||||||||||||
Sbjct: 3997 ggtctgctgggccagctcg 3979
>ISPa38
Length = 6455
Score = 40.1 bits (20), Expect = 1.1
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 131307 tgcggatcgaggagcactac 131326
||||||||||||||||||||
Sbjct: 5689 tgcggatcgaggagcactac 5708
>ISStsp6
Length = 1476
Score = 40.1 bits (20), Expect = 1.1
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 87049 cttcgacagctcggcgatgg 87068
||||||||||||||||||||
Sbjct: 1010 cttcgacagctcggcgatgg 991
>ISGeob1
Length = 1020
Score = 40.1 bits (20), Expect = 1.1
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 120410 gctggccgctgagcgccgtc 120429
||||||||||||||||||||
Sbjct: 204 gctggccgctgagcgccgtc 223
>ISShes11
Length = 7669
Score = 40.1 bits (20), Expect = 1.1
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 131307 tgcggatcgaggagcactac 131326
||||||||||||||||||||
Sbjct: 6903 tgcggatcgaggagcactac 6922
>ISMtsp5
Length = 1347
Score = 40.1 bits (20), Expect = 1.1
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 131997 cggcgctgcgcgacgagatccgcg 132020
||||||||| ||||||||||||||
Sbjct: 577 cggcgctgctcgacgagatccgcg 600
>ISMpo6
Length = 1593
Score = 40.1 bits (20), Expect = 1.1
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 196090 gtcgacgacgcgcaccggat 196109
||||||||||||||||||||
Sbjct: 174 gtcgacgacgcgcaccggat 155
>ISAnsp11
Length = 1510
Score = 40.1 bits (20), Expect = 1.1
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 39871 ccgatctcggcgcccggctt 39890
||||||||||||||||||||
Sbjct: 490 ccgatctcggcgcccggctt 509
>ISThsp9
Length = 6215
Score = 40.1 bits (20), Expect = 1.1
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 190590 ccaggcgcgggccagcgcga 190609
||||||||||||||||||||
Sbjct: 3858 ccaggcgcgggccagcgcga 3839
>ISAli6
Length = 1437
Score = 40.1 bits (20), Expect = 1.1
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 57529 ccgccaccgcgagggtgacggcga 57552
|||||||||||| |||||||||||
Sbjct: 716 ccgccaccgcgatggtgacggcga 693
>ISCku7
Length = 2368
Score = 40.1 bits (20), Expect = 1.1
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 53039 tgctgctcgatgagcgcctt 53058
||||||||||||||||||||
Sbjct: 188 tgctgctcgatgagcgcctt 169
>ISAau4
Length = 3898
Score = 40.1 bits (20), Expect = 1.1
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 131461 accggtcgtcgccgaggggc 131480
||||||||||||||||||||
Sbjct: 2033 accggtcgtcgccgaggggc 2052
>ISSme2
Length = 2219
Score = 40.1 bits (20), Expect = 1.1
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 65554 cggcgatccgcgaccagctc 65573
||||||||||||||||||||
Sbjct: 1421 cggcgatccgcgaccagctc 1440
>ISLxx3
Length = 2637
Score = 40.1 bits (20), Expect = 1.1
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 48462 cccggcgaccacgtcggcgt 48481
||||||||||||||||||||
Sbjct: 1498 cccggcgaccacgtcggcgt 1479
>IS117
Length = 2527
Score = 40.1 bits (20), Expect = 1.1
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 53875 aaggcgtcctcgacggccgcaagc 53898
||||||||||||||||||| ||||
Sbjct: 1027 aaggcgtcctcgacggccggaagc 1050
>TnXo19
Length = 18767
Score = 38.2 bits (19), Expect = 4.2
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 94992 cgatccagtcccacgtcgc 95010
|||||||||||||||||||
Sbjct: 15359 cgatccagtcccacgtcgc 15341
>ISRel10
Length = 2528
Score = 38.2 bits (19), Expect = 4.2
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 189333 gcaggccgccgaacggctc 189351
|||||||||||||||||||
Sbjct: 228 gcaggccgccgaacggctc 246
>ISMex44
Length = 1270
Score = 38.2 bits (19), Expect = 4.2
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 128625 cggcgaacgccgcctcgac 128643
|||||||||||||||||||
Sbjct: 625 cggcgaacgccgcctcgac 607
>ISHaru3
Length = 1478
Score = 38.2 bits (19), Expect = 4.2
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 129206 ccgacgagcaacgcgacgt 129224
|||||||||||||||||||
Sbjct: 198 ccgacgagcaacgcgacgt 216
>ISHla15
Length = 1835
Score = 38.2 bits (19), Expect = 4.2
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 59637 cgaggtcatcggcgggttc 59655
|||||||||||||||||||
Sbjct: 289 cgaggtcatcggcgggttc 307
>ISHti3
Length = 1400
Score = 38.2 bits (19), Expect = 4.2
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 91487 gacgcgcccgttgaccgtc 91505
|||||||||||||||||||
Sbjct: 529 gacgcgcccgttgaccgtc 511
>ISHarch3
Length = 1819
Score = 38.2 bits (19), Expect = 4.2
Identities = 28/31 (90%)
Strand = Plus / Plus
Query: 154144 cgaacgtctccgtctcggagtccggggcgac 154174
||||||||| || |||| |||||||||||||
Sbjct: 803 cgaacgtcttcggctcgaagtccggggcgac 833
>ISAs30
Length = 1426
Score = 38.2 bits (19), Expect = 4.2
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 59534 ccctgctcgccgcagagggcgtc 59556
|||||||||||| ||||||||||
Sbjct: 179 ccctgctcgccgaagagggcgtc 201
>ISHhu5
Length = 1400
Score = 38.2 bits (19), Expect = 4.2
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 91487 gacgcgcccgttgaccgtc 91505
|||||||||||||||||||
Sbjct: 529 gacgcgcccgttgaccgtc 511
>ISHhu4
Length = 1401
Score = 38.2 bits (19), Expect = 4.2
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 91487 gacgcgcccgttgaccgtc 91505
|||||||||||||||||||
Sbjct: 530 gacgcgcccgttgaccgtc 512
>ISHvo17
Length = 1508
Score = 38.2 bits (19), Expect = 4.2
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 115268 acgtcgtgcgcttcgccctcgcc 115290
|||||||||||||||| ||||||
Sbjct: 862 acgtcgtgcgcttcgcgctcgcc 884
>ISTni1
Length = 2377
Score = 38.2 bits (19), Expect = 4.2
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 141211 cggccggcgccggtgccga 141229
|||||||||||||||||||
Sbjct: 383 cggccggcgccggtgccga 401
>ISNov1
Length = 2277
Score = 38.2 bits (19), Expect = 4.2
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 56972 catccgggtcaggtcgtcg 56990
|||||||||||||||||||
Sbjct: 581 catccgggtcaggtcgtcg 563
>ISRba9
Length = 1450
Score = 38.2 bits (19), Expect = 4.2
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 84965 agggtgagcgcgaagacgt 84983
|||||||||||||||||||
Sbjct: 318 agggtgagcgcgaagacgt 336
>ISRso21
Length = 2032
Score = 38.2 bits (19), Expect = 4.2
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 9979 ggtggtcgaagtaggccag 9997
|||||||||||||||||||
Sbjct: 1653 ggtggtcgaagtaggccag 1635
>ISMesi1
Length = 1234
Score = 38.2 bits (19), Expect = 4.2
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 110365 cgaaggcctccaccgacgcccgc 110387
|||| ||||||||||||||||||
Sbjct: 1090 cgaacgcctccaccgacgcccgc 1068
>ISAzs11
Length = 1224
Score = 38.2 bits (19), Expect = 4.2
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 132343 cgtcgccgaggcgaagggcgtca 132365
||||||||||||||||| |||||
Sbjct: 490 cgtcgccgaggcgaaggccgtca 468
>ISGeob2
Length = 968
Score = 38.2 bits (19), Expect = 4.2
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 28217 tggcccgggcgtcggcgaggtcg 28239
||||||||||| |||||||||||
Sbjct: 657 tggcccgggcggcggcgaggtcg 635
>ISSar1
Length = 914
Score = 38.2 bits (19), Expect = 4.2
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 85430 gcctcggatgcgctcggcgaggt 85452
|||||||||||| ||||||||||
Sbjct: 195 gcctcggatgcgttcggcgaggt 173
>ISMtsp10
Length = 1778
Score = 38.2 bits (19), Expect = 4.2
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 59706 cttcgccgacctgttcccg 59724
|||||||||||||||||||
Sbjct: 230 cttcgccgacctgttcccg 248
>ISHwa15
Length = 1845
Score = 38.2 bits (19), Expect = 4.2
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 178740 ctacgccaccgagaaggccaagg 178762
||||| |||||||||||||||||
Sbjct: 566 ctacgtcaccgagaaggccaagg 588
>ISEc32
Length = 1180
Score = 38.2 bits (19), Expect = 4.2
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 183200 cgcgacggtgatgtcgccgacgc 183222
|||||||||||| ||||||||||
Sbjct: 801 cgcgacggtgatatcgccgacgc 779
>ISMno22
Length = 1426
Score = 38.2 bits (19), Expect = 4.2
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 193814 tgatcttgccctggatgtc 193832
|||||||||||||||||||
Sbjct: 901 tgatcttgccctggatgtc 883
>ISFsp13
Length = 1724
Score = 38.2 bits (19), Expect = 4.2
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 28899 gtcgtcgggctggccggtc 28917
|||||||||||||||||||
Sbjct: 1323 gtcgtcgggctggccggtc 1305
>ISFsp12
Length = 1730
Score = 38.2 bits (19), Expect = 4.2
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 28899 gtcgtcgggctggccggtc 28917
|||||||||||||||||||
Sbjct: 1323 gtcgtcgggctggccggtc 1305
>ISSpma3
Length = 1269
Score = 38.2 bits (19), Expect = 4.2
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 88273 ctcgcgcacgacccggcgc 88291
|||||||||||||||||||
Sbjct: 820 ctcgcgcacgacccggcgc 802
>ISRhru3
Length = 1382
Score = 38.2 bits (19), Expect = 4.2
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 15387 cgatgctgcgcgcccgcga 15405
|||||||||||||||||||
Sbjct: 665 cgatgctgcgcgcccgcga 683
>ISMno13
Length = 2459
Score = 38.2 bits (19), Expect = 4.2
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 111352 ccgcatcgacgagctgctg 111370
|||||||||||||||||||
Sbjct: 2383 ccgcatcgacgagctgctg 2401
>ISMch6
Length = 1379
Score = 38.2 bits (19), Expect = 4.2
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 30669 catggcccgtcggatcgccgagg 30691
|||||||||||| ||||||||||
Sbjct: 1228 catggcccgtcgcatcgccgagg 1250
>ISPfr18
Length = 1437
Score = 38.2 bits (19), Expect = 4.2
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 118663 cttggtgaggaagctcgcg 118681
|||||||||||||||||||
Sbjct: 1022 cttggtgaggaagctcgcg 1004
>ISPfr3
Length = 1457
Score = 38.2 bits (19), Expect = 4.2
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 139885 cgtcgaggtcgaggtcacc 139903
|||||||||||||||||||
Sbjct: 1097 cgtcgaggtcgaggtcacc 1115
>ISStr1
Length = 1664
Score = 38.2 bits (19), Expect = 4.2
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 56486 gtgctgggcccaggcgacc 56504
|||||||||||||||||||
Sbjct: 501 gtgctgggcccaggcgacc 483
>ISCef6
Length = 1684
Score = 38.2 bits (19), Expect = 4.2
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 7313 ccggcgaccatcccggcga 7331
|||||||||||||||||||
Sbjct: 326 ccggcgaccatcccggcga 308
>ISAcr5
Length = 1618
Score = 38.2 bits (19), Expect = 4.2
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 51128 gctggcccgcgagcgcgaggtcgggtc 51154
|||||||||||||| ||||||| ||||
Sbjct: 1198 gctggcccgcgagcacgaggtccggtc 1172
>ISAcr4
Length = 1618
Score = 38.2 bits (19), Expect = 4.2
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 51128 gctggcccgcgagcgcgaggtcgggtc 51154
|||||||||||||| ||||||| ||||
Sbjct: 1197 gctggcccgcgagcacgaggtccggtc 1171
>ISRsp7
Length = 2024
Score = 38.2 bits (19), Expect = 4.2
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 95816 cagattcgttgacggggtccgat 95838
|||||||||||| ||||||||||
Sbjct: 227 cagattcgttgagggggtccgat 249
>ISMex33
Length = 1318
Score = 38.2 bits (19), Expect = 4.2
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 41991 ccgggtccgcaccaccgtt 42009
|||||||||||||||||||
Sbjct: 682 ccgggtccgcaccaccgtt 700
>ISMex35
Length = 1294
Score = 38.2 bits (19), Expect = 4.2
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 56017 cgcgctggacgatccagtggtcg 56039
|||||||||||||| ||||||||
Sbjct: 648 cgcgctggacgatcaagtggtcg 670
>ISMdi2
Length = 1689
Score = 38.2 bits (19), Expect = 4.2
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 19737 ctcggcggcttcgtcaccgggct 19759
||||||||||||||||| |||||
Sbjct: 1449 ctcggcggcttcgtcacagggct 1471
>ISMex36
Length = 1467
Score = 38.2 bits (19), Expect = 4.2
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 146437 ctcgtcgagacccgccgcccggc 146459
|||| ||||||||||||||||||
Sbjct: 461 ctcgacgagacccgccgcccggc 439
>ISMex14
Length = 1381
Score = 38.2 bits (19), Expect = 4.2
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 42704 cggccatcggtcaggcggc 42722
|||||||||||||||||||
Sbjct: 1337 cggccatcggtcaggcggc 1319
>ISMex22
Length = 3864
Score = 38.2 bits (19), Expect = 4.2
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 21343 cgccgtcacggcgagcgaggccg 21365
||||| |||||||||||||||||
Sbjct: 3033 cgccgccacggcgagcgaggccg 3055
>ISAzo41
Length = 1158
Score = 38.2 bits (19), Expect = 4.2
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 63780 tcgcctcgggcagcggcga 63798
|||||||||||||||||||
Sbjct: 1153 tcgcctcgggcagcggcga 1135
>ISAzo29
Length = 1304
Score = 38.2 bits (19), Expect = 4.2
Identities = 35/39 (89%), Gaps = 1/39 (2%)
Strand = Plus / Minus
Query: 39323 gctacgcgctcctcatc-ctcttcgtcatcctcatcctc 39360
||||||||||| |||| ||| |||||||||||||||||
Sbjct: 1291 gctacgcgctcatcattactcgtcgtcatcctcatcctc 1253
>ISCARN68
Length = 1419
Score = 38.2 bits (19), Expect = 4.2
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 76739 gaccgaggcgccgacgggcgagg 76761
|||||||||||||||| ||||||
Sbjct: 945 gaccgaggcgccgacgcgcgagg 967
>ISAzo15
Length = 2441
Score = 38.2 bits (19), Expect = 4.2
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 14841 cgtcgcgcagcgcctcgag 14859
|||||||||||||||||||
Sbjct: 1119 cgtcgcgcagcgcctcgag 1101
Score = 38.2 bits (19), Expect = 4.2
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 160803 cgaacaccgccacgagccc 160821
|||||||||||||||||||
Sbjct: 1211 cgaacaccgccacgagccc 1229
>ISAzca2
Length = 2458
Score = 38.2 bits (19), Expect = 4.2
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 188782 gtcgaggtgggcgaccggc 188800
|||||||||||||||||||
Sbjct: 1794 gtcgaggtgggcgaccggc 1776
>ISThsp1
Length = 1539
Score = 38.2 bits (19), Expect = 4.2
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 189951 cctgcgcctcgacctcgtcggtg 189973
||||||||||| |||||||||||
Sbjct: 627 cctgcgcctcggcctcgtcggtg 605
>ISRhru2
Length = 1443
Score = 38.2 bits (19), Expect = 4.2
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 58148 cccggtggtgacgcgggtc 58166
|||||||||||||||||||
Sbjct: 436 cccggtggtgacgcgggtc 454
>ISSce1
Length = 4601
Score = 38.2 bits (19), Expect = 4.2
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 150867 ccgcccgcgccggcgccgc 150885
|||||||||||||||||||
Sbjct: 1231 ccgcccgcgccggcgccgc 1249
>ISSam1
Length = 1489
Score = 38.2 bits (19), Expect = 4.2
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 108040 gggtcaggccgtggccgtg 108058
|||||||||||||||||||
Sbjct: 342 gggtcaggccgtggccgtg 324
>ISRhba2
Length = 1231
Score = 38.2 bits (19), Expect = 4.2
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 75115 gcagccgacctgccagccg 75133
|||||||||||||||||||
Sbjct: 433 gcagccgacctgccagccg 451
>ISRhosp3
Length = 1349
Score = 38.2 bits (19), Expect = 4.2
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 120979 ggacgtcgacgcggtccgcgacg 121001
||||||||||| |||||||||||
Sbjct: 253 ggacgtcgacggggtccgcgacg 275
>ISRhosp4
Length = 1349
Score = 38.2 bits (19), Expect = 4.2
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 66091 accctcgccgagcgggccg 66109
|||||||||||||||||||
Sbjct: 185 accctcgccgagcgggccg 203
Score = 38.2 bits (19), Expect = 4.2
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 120979 ggacgtcgacgcggtccgcgacg 121001
||||||||||| |||||||||||
Sbjct: 253 ggacgtcgacggggtccgcgacg 275
>ISAzvi6
Length = 1422
Score = 38.2 bits (19), Expect = 4.2
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 154056 cgggcgccctcggacatccgctt 154078
||||||||||||||||| |||||
Sbjct: 1183 cgggcgccctcggacatacgctt 1205
>ISMyma1
Length = 1240
Score = 38.2 bits (19), Expect = 4.2
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 64586 cggcggcactgcggcccaactcctcgg 64612
||||||| ||||||||||||||||||
Sbjct: 884 cggcggctatgcggcccaactcctcgg 858
>ISBcen14
Length = 2516
Score = 38.2 bits (19), Expect = 4.2
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 96148 cgtgctcgagcgcatcgcc 96166
|||||||||||||||||||
Sbjct: 2353 cgtgctcgagcgcatcgcc 2371
>ISBmu2
Length = 1210
Score = 38.2 bits (19), Expect = 4.2
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 68796 tgcccgtgcagcagggcat 68814
|||||||||||||||||||
Sbjct: 727 tgcccgtgcagcagggcat 709
>ISLxx1
Length = 2205
Score = 38.2 bits (19), Expect = 4.2
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 123974 cgacttcacgaccacgacc 123992
|||||||||||||||||||
Sbjct: 1282 cgacttcacgaccacgacc 1300
>ISBlo5
Length = 1366
Score = 38.2 bits (19), Expect = 4.2
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 133971 gagggcgccggcgagacgacgac 133993
||||||| |||||||||||||||
Sbjct: 1052 gagggcgtcggcgagacgacgac 1074
>ISSco3
Length = 1101
Score = 38.2 bits (19), Expect = 4.2
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 53710 acggcgttctcggagaggccggc 53732
|||||||| ||||||||||||||
Sbjct: 724 acggcgttttcggagaggccggc 702
>ISMav2
Length = 1361
Score = 38.2 bits (19), Expect = 4.2
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 181262 cgccccgcgctcccagcgc 181280
|||||||||||||||||||
Sbjct: 519 cgccccgcgctcccagcgc 501
>IS999
Length = 1347
Score = 38.2 bits (19), Expect = 4.2
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 136611 cggtgcgcaccggggtccgtcag 136633
||||||||||| |||||||||||
Sbjct: 215 cggtgcgcacctgggtccgtcag 237
>IS468A
Length = 1097
Score = 38.2 bits (19), Expect = 4.2
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 53710 acggcgttctcggagaggccggc 53732
|||||||| ||||||||||||||
Sbjct: 722 acggcgttttcggagaggccggc 700
>IS1632
Length = 1394
Score = 38.2 bits (19), Expect = 4.2
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 69181 tcgacgtcttcgtcgagaa 69199
|||||||||||||||||||
Sbjct: 1011 tcgacgtcttcgtcgagaa 1029
>IS1394
Length = 1100
Score = 38.2 bits (19), Expect = 4.2
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 63355 gttcgagatggtcgcccacctgc 63377
||||||| |||||||||||||||
Sbjct: 294 gttcgagctggtcgcccacctgc 316
>IS1137
Length = 1361
Score = 38.2 bits (19), Expect = 4.2
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 81304 cggcgacggcggtgcgcacccgc 81326
||||||||| |||||||||||||
Sbjct: 740 cggcgacggtggtgcgcacccgc 718
>IS1096
Length = 2259
Score = 38.2 bits (19), Expect = 4.2
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 179478 cgacggtgtcgtcgaggac 179496
|||||||||||||||||||
Sbjct: 1809 cgacggtgtcgtcgaggac 1791
Score = 38.2 bits (19), Expect = 4.2
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 155699 ggacctgccgggcaacctcatgc 155721
||||||||||||| |||||||||
Sbjct: 1962 ggacctgccgggcgacctcatgc 1940
>IS1066
Length = 1137
Score = 38.2 bits (19), Expect = 4.2
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 134455 acgacgcggtgtggcgcgc 134473
|||||||||||||||||||
Sbjct: 436 acgacgcggtgtggcgcgc 454
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_8_length_195551_cov_88.3338_ID_5184
(195,551 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISArsp6 | Tn3 | Arthrobacter sp. | 64 | 7e-08 | |
| ISMsm5 | IS630 | Mycobacterium smegmatis | 50 | 0.001 | |
| ISApr9 | IS1380 | Alpha proteobacterium | 44 | 0.068 | |
| ISSce1 | IS1 | ISMhu11 | Sorangium cellulosum | 44 | 0.068 |
| ISKpn23 | IS1380 | Klebsiella pneumoniae | 42 | 0.27 | |
| ISPa43 | Tn3 | Pseudomonas aeruginosa | 42 | 0.27 | |
| ISGeob4 | IS5 | ISL2 | Geodermatophilus obscurus | 42 | 0.27 |
| ISGeob1 | IS5 | ISL2 | Geodermatophilus obscurus | 42 | 0.27 |
| ISNml2 | IS1380 | Nakamurella multipartita | 42 | 0.27 | |
| ISApr4 | IS1595 | ISNwi1 | Alpha proteobacterium | 42 | 0.27 |
| TnXo19 | Tn3 | Xanthomonas oryzae | 40 | 1.1 | |
| ISMno24 | IS91 | Methylobacterium nodulans | 40 | 1.1 | |
| ISArsp5 | IS110 | Arthrobacter sp. | 40 | 1.1 | |
| ISMav7 | IS1380 | Mycobacterium avium | 40 | 1.1 | |
| ISMyma7 | IS1380 | - | Mycobacterium marinum | 40 | 1.1 |
| ISTro1 | IS1380 | Thiocapsa roseopersicina | 40 | 1.1 | |
| ISApr10 | IS256 | Alpha proteobacterium | 40 | 1.1 | |
| ISAde5 | IS256 | Anaeromyxobacter dehalogenans | 40 | 1.1 | |
| ISAnsp12 | IS66 | Anaeromyxobacter sp. | 40 | 1.1 | |
| ISMdi27 | IS21 | Methylobacterium dichloromethanicum | 40 | 1.1 | |
| ISCARN42 | IS701 | Metagenomic data from CARNOULES | 40 | 1.1 | |
| ISCARN34 | IS1380 | Metagenomic data from CARNOULES | 40 | 1.1 | |
| ISXau4 | IS66 | Xanthobacter autotrophicus | 40 | 1.1 | |
| ISXoo13 | ISL3 | Xanthomonas oryzae | 40 | 1.1 | |
| ISStag1 | IS6 | Stappia aggregata | 40 | 1.1 | |
| ISRle5 | IS3 | IS407 | Rhizobium leguminosarum | 40 | 1.1 |
| ISAzo7 | IS1595 | ISSod11 | Azoarcus sp. | 40 | 1.1 |
| ISSiac1 | IS701 | Singulisphaera acidiphila | 40 | 1.1 | |
| ISRso9 | IS5 | IS5 | Ralstonia solanacearum | 40 | 1.1 |
| IS4811 | IS5 | IS1031 | Streptomyces lividans | 40 | 1.1 |
| IS1096 | ISL3 | - | Mycobacterium smegmatis | 40 | 1.1 |
| ISXci1 | IS21 | Xanthomonas citri | 38 | 4.2 | |
| TnAs1 | Tn3 | Aeromonas salmonicida | 38 | 4.2 | |
| TnAs2 | Tn3 | Aeromonas salmonicida | 38 | 4.2 | |
| ISBj7 | IS6 | Bradyrhizobium japonicum | 38 | 4.2 | |
| ISFK1 | IS21 | Bradyrhizobium japonicum | 38 | 4.2 | |
| ISNpe10 | IS200/IS605 | Natrinema pellirubrum | 38 | 4.2 | |
| ISFsp17 | ISKra4 | ISKra4 | Frankia sp. | 38 | 4.2 |
| ISHoc2 | ISKra4 | ISKra4 | Haliangium ochraceum | 38 | 4.2 |
| ISTni2 | IS481 | Thioalkalivibrio nitratireducens | 38 | 4.2 | |
| ISPa38 | Tn3 | Pseudomonas aeruginosa | 38 | 4.2 | |
| ISPfe2 | IS1634 | Paracoccus ferrooxidans | 38 | 4.2 | |
| ISAzs34 | ISNCY | IS892 | Azospirillum sp. | 38 | 4.2 |
| ISAzs28 | IS5 | IS1031 | Azospirillum sp. | 38 | 4.2 |
| ISAzs23 | IS3 | IS3 | Azospirillum sp. | 38 | 4.2 |
| ISAzs8 | ISL3 | Azospirillum sp. | 38 | 4.2 | |
| ISAzs6 | IS701 | Azospirillum sp. | 38 | 4.2 | |
| ISRhsp8 | IS5 | IS903 | Rhodobacter sphaeroides | 38 | 4.2 |
| ISAnsp14 | IS256 | Anaeromyxobacter sp. | 38 | 4.2 | |
| ISMra6 | IS5 | IS427 | Methylobacterium radiotolerans | 38 | 4.2 |
| ISAtc2 | ISL3 | Acidithiobacillus caldus | 38 | 4.2 | |
| ISHut1 | IS5 | ISH1 | Halorhabdus utahensis | 38 | 4.2 |
| ISMno7 | IS110 | Methylobacterium nodulans | 38 | 4.2 | |
| ISPfr8 | ISL3 | Propionibacterium freudenreichii | 38 | 4.2 | |
| ISGosp1 | IS1380 | Gordonia sp. | 38 | 4.2 | |
| ISFsp15 | IS1380 | Frankia sp. | 38 | 4.2 | |
| ISFsp14 | IS1380 | Frankia sp. | 38 | 4.2 | |
| ISAar17 | IS110 | Arthrobacter arilaitensis | 38 | 4.2 | |
| ISAzo2 | IS1182 | Azoarcus sp. | 38 | 4.2 | |
| ISMex38 | Tn3 | Methylobacterium extorquens | 38 | 4.2 | |
| ISThsp19 | IS21 | Thiomonas sp. | 38 | 4.2 | |
| ISThsp12 | IS1634 | Thiomonas sp. | 38 | 4.2 | |
| ISCARN89 | IS21 | Metagenomic data from CARNOULES | 38 | 4.2 | |
| ISAzo35 | IS701 | Azoarcus sp. | 38 | 4.2 | |
| ISAzo30 | IS630 | Azoarcus sp. | 38 | 4.2 | |
| ISCARN23 | IS1634 | Metagenomic data from CARNOULES | 38 | 4.2 | |
| ISCARN22 | IS66 | Metagenomic data from CARNOULES | 38 | 4.2 | |
| ISRosp4 | IS66 | Roseobacter sp. | 38 | 4.2 | |
| ISAnsp3 | IS66 | Anaeromyxobacter sp. | 38 | 4.2 | |
| ISApr5 | IS6 | Alpha proteobacterium | 38 | 4.2 | |
| ISAzca1 | IS1595 | ISNha5 | Azorhizobium caulinodans | 38 | 4.2 |
| ISLxc4 | IS30 | Leifsonia xyli | 38 | 4.2 | |
| ISPa25 | IS110 | IS1111 | Pseudomonas aeruginosa | 38 | 4.2 |
| ISPosp5 | IS3 | IS3 | Polaromonas sp. | 38 | 4.2 |
| ISFsp1 | ISL3 | Frankia sp. | 38 | 4.2 | |
| ISH22 | IS200/IS605 | Halobacterium sp. | 38 | 4.2 | |
| ISAzo4 | IS21 | Azoarcus sp. | 38 | 4.2 | |
| IS883 | IS66 | Ralstonia eutropha | 38 | 4.2 | |
| ISUnCu1 | IS110 | IS1111 | Uncultured bacterium | 38 | 4.2 |
| ISMmg1 | IS110 | IS1111 | Magnetospirillum magnetotacticum | 38 | 4.2 |
| ISBlo9 | IS3 | IS150 | Bifidobacterium longum | 38 | 4.2 |
| ISPa42 | Tn3 | Pseudomonas aeruginosa | 38 | 4.2 | |
| ISHs1 | ISH6 | Halobacterium salinarum | 38 | 4.2 | |
| ISH6 | ISH6 | Halobacterium salinarum | 38 | 4.2 | |
| IS1141 | IS3 | IS3 | Mycobacterium intracellulare | 38 | 4.2 |
>ISArsp6
Length = 26712
Score = 63.9 bits (32), Expect = 7e-08
Identities = 35/36 (97%)
Strand = Plus / Minus
Query: 17984 gacatcatgttcgcgcagatgatgatcccgcaccac 18019
|||| |||||||||||||||||||||||||||||||
Sbjct: 21669 gacaccatgttcgcgcagatgatgatcccgcaccac 21634
Score = 42.1 bits (21), Expect = 0.27
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 112979 accagccgctcgcgttggcgc 112999
|||||||||||||||||||||
Sbjct: 1721 accagccgctcgcgttggcgc 1741
>ISMsm5
Length = 1103
Score = 50.1 bits (25), Expect = 0.001
Identities = 57/67 (85%), Gaps = 3/67 (4%)
Strand = Plus / Minus
Query: 195478 gtgtcgcgcgtctgagtttcgtttacgggtggcgtggggcaggatctggtcagcggtctt 195537
||||||||||||||| || ||||||| ||| ||||||||||| | ||| ||||||||
Sbjct: 1103 gtgtcgcgcgtctgaagtttgtttacgagtg---tggggcaggatttcgtcggcggtctt 1047
Query: 195538 ggtccac 195544
|||||||
Sbjct: 1046 ggtccac 1040
>ISApr9
Length = 1668
Score = 44.1 bits (22), Expect = 0.068
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 109775 ttggccgaggtggccgtcaccg 109796
||||||||||||||||||||||
Sbjct: 1361 ttggccgaggtggccgtcaccg 1382
>ISSce1
Length = 4601
Score = 44.1 bits (22), Expect = 0.068
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 81777 cacgtccgccttgcccaccgtc 81798
||||||||||||||||||||||
Sbjct: 4399 cacgtccgccttgcccaccgtc 4420
>ISKpn23
Length = 1671
Score = 42.1 bits (21), Expect = 0.27
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 109776 tggccgaggtggccgtcaccg 109796
|||||||||||||||||||||
Sbjct: 1365 tggccgaggtggccgtcaccg 1385
>ISPa43
Length = 19903
Score = 42.1 bits (21), Expect = 0.27
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 153285 cctgaacgagggcgagatcctcggc 153309
|||| ||||||||||||||||||||
Sbjct: 10661 cctgcacgagggcgagatcctcggc 10685
>ISGeob4
Length = 982
Score = 42.1 bits (21), Expect = 0.27
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 172379 gccgccctgctcgggctgccc 172399
|||||||||||||||||||||
Sbjct: 683 gccgccctgctcgggctgccc 703
>ISGeob1
Length = 1020
Score = 42.1 bits (21), Expect = 0.27
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 88619 cggcggtgctggcgccgatgc 88639
|||||||||||||||||||||
Sbjct: 940 cggcggtgctggcgccgatgc 920
>ISNml2
Length = 1689
Score = 42.1 bits (21), Expect = 0.27
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 139815 gctggtccgcaccgaccgggccggc 139839
|||||||||||||||| ||||||||
Sbjct: 819 gctggtccgcaccgacggggccggc 843
Score = 40.1 bits (20), Expect = 1.1
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 185192 cgatcggcgcgtgggccgac 185211
||||||||||||||||||||
Sbjct: 647 cgatcggcgcgtgggccgac 666
>ISApr4
Length = 3691
Score = 42.1 bits (21), Expect = 0.27
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 169913 gacgatgatggtcgcggccctggcc 169937
|||||||||||| ||||||||||||
Sbjct: 3017 gacgatgatggtggcggccctggcc 2993
>TnXo19
Length = 18767
Score = 40.1 bits (20), Expect = 1.1
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 171655 gttcctggtcggccaccacc 171674
||||||||||||||||||||
Sbjct: 1487 gttcctggtcggccaccacc 1468
Score = 38.2 bits (19), Expect = 4.2
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 53630 caacctggccggccgcacc 53648
|||||||||||||||||||
Sbjct: 11357 caacctggccggccgcacc 11339
>ISMno24
Length = 2157
Score = 40.1 bits (20), Expect = 1.1
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 88781 ggccggggaagagccagccg 88800
||||||||||||||||||||
Sbjct: 1526 ggccggggaagagccagccg 1545
>ISArsp5
Length = 1426
Score = 40.1 bits (20), Expect = 1.1
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 61202 tcggcgatgatgaacgcgtc 61221
||||||||||||||||||||
Sbjct: 541 tcggcgatgatgaacgcgtc 522
Score = 38.2 bits (19), Expect = 4.2
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 59181 ggtcggccaggtccgcagc 59199
|||||||||||||||||||
Sbjct: 770 ggtcggccaggtccgcagc 752
>ISMav7
Length = 1691
Score = 40.1 bits (20), Expect = 1.1
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 141703 tcccgtcgtcgtcggtgaaccgca 141726
|||||||| |||||||||||||||
Sbjct: 1121 tcccgtcggcgtcggtgaaccgca 1098
>ISMyma7
Length = 1694
Score = 40.1 bits (20), Expect = 1.1
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 141703 tcccgtcgtcgtcggtgaaccgca 141726
|||||||| |||||||||||||||
Sbjct: 1119 tcccgtcggcgtcggtgaaccgca 1096
>ISTro1
Length = 1735
Score = 40.1 bits (20), Expect = 1.1
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 181437 cgaggacctcggtgcgcagc 181456
||||||||||||||||||||
Sbjct: 1305 cgaggacctcggtgcgcagc 1286
>ISApr10
Length = 1366
Score = 40.1 bits (20), Expect = 1.1
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 2259 cgtcggcatcgacgtgatcggcgacaag 2286
|||||||||||||| ||||||||||||
Sbjct: 614 cgtcggcatcgacggcatcggcgacaag 641
>ISAde5
Length = 1270
Score = 40.1 bits (20), Expect = 1.1
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 192786 ggcctcgccgccaagcgagg 192805
||||||||||||||||||||
Sbjct: 27 ggcctcgccgccaagcgagg 46
>ISAnsp12
Length = 2926
Score = 40.1 bits (20), Expect = 1.1
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 173685 cgccgaggccgaccgcatcg 173704
||||||||||||||||||||
Sbjct: 1130 cgccgaggccgaccgcatcg 1149
>ISMdi27
Length = 2476
Score = 40.1 bits (20), Expect = 1.1
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 26636 gcatcgcctaccacctcgcccgcc 26659
|||||||| |||||||||||||||
Sbjct: 2057 gcatcgccgaccacctcgcccgcc 2080
>ISCARN42
Length = 1473
Score = 40.1 bits (20), Expect = 1.1
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 126193 cgcactgctcgcccgcctcg 126212
||||||||||||||||||||
Sbjct: 1398 cgcactgctcgcccgcctcg 1417
>ISCARN34
Length = 1714
Score = 40.1 bits (20), Expect = 1.1
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 72350 catccaggcgctggcgcagg 72369
||||||||||||||||||||
Sbjct: 416 catccaggcgctggcgcagg 397
>ISXau4
Length = 2458
Score = 40.1 bits (20), Expect = 1.1
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 117135 gacgcggagatcgagcgcct 117154
||||||||||||||||||||
Sbjct: 979 gacgcggagatcgagcgcct 998
>ISXoo13
Length = 1312
Score = 40.1 bits (20), Expect = 1.1
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 4346 cgcgatcgcgcgacgtctcgtcga 4369
||||| ||||||||||||||||||
Sbjct: 555 cgcgagcgcgcgacgtctcgtcga 532
>ISStag1
Length = 889
Score = 40.1 bits (20), Expect = 1.1
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 39910 catgaatgcattcaagggcc 39929
||||||||||||||||||||
Sbjct: 65 catgaatgcattcaagggcc 84
>ISRle5
Length = 1196
Score = 40.1 bits (20), Expect = 1.1
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 113103 gggcgatctcgatccggcgt 113122
||||||||||||||||||||
Sbjct: 372 gggcgatctcgatccggcgt 391
>ISAzo7
Length = 1044
Score = 40.1 bits (20), Expect = 1.1
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 22818 agcacccgctgcaggccgagggca 22841
||||||||||||| ||||||||||
Sbjct: 377 agcacccgctgcaagccgagggca 354
>ISSiac1
Length = 1358
Score = 40.1 bits (20), Expect = 1.1
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 960 tcgccgagtacctcaccggc 979
||||||||||||||||||||
Sbjct: 195 tcgccgagtacctcaccggc 214
>ISRso9
Length = 1483
Score = 40.1 bits (20), Expect = 1.1
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 175993 ggtgatcaaggccgccagca 176012
||||||||||||||||||||
Sbjct: 527 ggtgatcaaggccgccagca 546
>IS4811
Length = 5396
Score = 40.1 bits (20), Expect = 1.1
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 138787 cctcaacggcgtcaccggcc 138806
||||||||||||||||||||
Sbjct: 3443 cctcaacggcgtcaccggcc 3424
>IS1096
Length = 2259
Score = 40.1 bits (20), Expect = 1.1
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 125954 gaggtcgtcggcgcgtcggt 125973
||||||||||||||||||||
Sbjct: 24 gaggtcgtcggcgcgtcggt 43
>ISXci1
Length = 2013
Score = 38.2 bits (19), Expect = 4.2
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 179077 gcgaccgtgctgttgcgcg 179095
|||||||||||||||||||
Sbjct: 315 gcgaccgtgctgttgcgcg 333
>TnAs1
Length = 6694
Score = 38.2 bits (19), Expect = 4.2
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 99469 cgcctggccagctcgatca 99487
|||||||||||||||||||
Sbjct: 6146 cgcctggccagctcgatca 6164
>TnAs2
Length = 8650
Score = 38.2 bits (19), Expect = 4.2
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 99903 tgacgtggtgccgtcgccc 99921
|||||||||||||||||||
Sbjct: 7678 tgacgtggtgccgtcgccc 7660
>ISBj7
Length = 824
Score = 38.2 bits (19), Expect = 4.2
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 75157 gatccgctcgcgtcgccgc 75175
|||||||||||||||||||
Sbjct: 590 gatccgctcgcgtcgccgc 572
>ISFK1
Length = 2592
Score = 38.2 bits (19), Expect = 4.2
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 53037 gcccggatccagccggccaagct 53059
|||||||||||| ||||||||||
Sbjct: 760 gcccggatccagtcggccaagct 738
>ISNpe10
Length = 1835
Score = 38.2 bits (19), Expect = 4.2
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 130308 acgtcgtcgtcagctgcgggacg 130330
|||||||||||| ||||||||||
Sbjct: 753 acgtcgtcgtcaactgcgggacg 731
>ISFsp17
Length = 1693
Score = 38.2 bits (19), Expect = 4.2
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 192913 tcatcgccgccggcctcgacgag 192935
|||||||||||||| ||||||||
Sbjct: 1035 tcatcgccgccggcttcgacgag 1057
>ISHoc2
Length = 1715
Score = 38.2 bits (19), Expect = 4.2
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 50057 tcgttcgacgaggtggtcg 50075
|||||||||||||||||||
Sbjct: 557 tcgttcgacgaggtggtcg 575
>ISTni2
Length = 3451
Score = 38.2 bits (19), Expect = 4.2
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 129511 cggcgcgccgtgctcctgctcga 129533
|||||||||||||||||| ||||
Sbjct: 2618 cggcgcgccgtgctcctgatcga 2640
>ISPa38
Length = 6455
Score = 38.2 bits (19), Expect = 4.2
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 99903 tgacgtggtgccgtcgccc 99921
|||||||||||||||||||
Sbjct: 5486 tgacgtggtgccgtcgccc 5468
>ISPfe2
Length = 1884
Score = 38.2 bits (19), Expect = 4.2
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 95764 gcgcgagcatgtcgagctcggtt 95786
||||||||||||||||| |||||
Sbjct: 1692 gcgcgagcatgtcgagcgcggtt 1670
>ISAzs34
Length = 1650
Score = 38.2 bits (19), Expect = 4.2
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 44314 tcaccggcacgggcagcgc 44332
|||||||||||||||||||
Sbjct: 680 tcaccggcacgggcagcgc 662
>ISAzs28
Length = 1055
Score = 38.2 bits (19), Expect = 4.2
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 127673 cggcgagcaccagcggcgc 127691
|||||||||||||||||||
Sbjct: 726 cggcgagcaccagcggcgc 708
>ISAzs23
Length = 1596
Score = 38.2 bits (19), Expect = 4.2
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 148781 ctgctcgccgacctcggcg 148799
|||||||||||||||||||
Sbjct: 1170 ctgctcgccgacctcggcg 1188
>ISAzs8
Length = 1373
Score = 38.2 bits (19), Expect = 4.2
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 137477 gacgaggacaccgtgcgcgccgc 137499
||||||||| |||||||||||||
Sbjct: 1150 gacgaggacgccgtgcgcgccgc 1172
>ISAzs6
Length = 1385
Score = 38.2 bits (19), Expect = 4.2
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 55539 cgggtcgccgggtcgcgct 55557
|||||||||||||||||||
Sbjct: 1011 cgggtcgccgggtcgcgct 1029
>ISRhsp8
Length = 1054
Score = 38.2 bits (19), Expect = 4.2
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 114766 ggaccgctgaacctgctgg 114784
|||||||||||||||||||
Sbjct: 406 ggaccgctgaacctgctgg 424
>ISAnsp14
Length = 1629
Score = 38.2 bits (19), Expect = 4.2
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 192788 cctcgccgccaagcgaggc 192806
|||||||||||||||||||
Sbjct: 48 cctcgccgccaagcgaggc 30
>ISMra6
Length = 851
Score = 38.2 bits (19), Expect = 4.2
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 15997 gctcgatcggctcggacgc 16015
|||||||||||||||||||
Sbjct: 297 gctcgatcggctcggacgc 315
>ISAtc2
Length = 1304
Score = 38.2 bits (19), Expect = 4.2
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 40604 cttgaggagctcctggagc 40622
|||||||||||||||||||
Sbjct: 945 cttgaggagctcctggagc 927
>ISHut1
Length = 926
Score = 38.2 bits (19), Expect = 4.2
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 125556 gtcgtcgagtggatgtcgg 125574
|||||||||||||||||||
Sbjct: 539 gtcgtcgagtggatgtcgg 521
>ISMno7
Length = 1147
Score = 38.2 bits (19), Expect = 4.2
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 2255 tcttcgtcggcatcgacgt 2273
|||||||||||||||||||
Sbjct: 196 tcttcgtcggcatcgacgt 214
>ISPfr8
Length = 1436
Score = 38.2 bits (19), Expect = 4.2
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 145476 agatcgtggccgcctaccg 145494
|||||||||||||||||||
Sbjct: 1111 agatcgtggccgcctaccg 1129
>ISGosp1
Length = 1642
Score = 38.2 bits (19), Expect = 4.2
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 92389 cctcgacatcgtccgggcc 92407
|||||||||||||||||||
Sbjct: 346 cctcgacatcgtccgggcc 364
>ISFsp15
Length = 1695
Score = 38.2 bits (19), Expect = 4.2
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 130068 gggcgacggtggcgacggtgatg 130090
||||| |||||||||||||||||
Sbjct: 767 gggcgccggtggcgacggtgatg 745
>ISFsp14
Length = 1696
Score = 38.2 bits (19), Expect = 4.2
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 130068 gggcgacggtggcgacggtgatg 130090
||||| |||||||||||||||||
Sbjct: 767 gggcgccggtggcgacggtgatg 745
>ISAar17
Length = 1473
Score = 38.2 bits (19), Expect = 4.2
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 61205 gcgatgatgaacgcgtctt 61223
|||||||||||||||||||
Sbjct: 585 gcgatgatgaacgcgtctt 567
>ISAzo2
Length = 1545
Score = 38.2 bits (19), Expect = 4.2
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 117564 cagctcaccgtcgaggtgcaggagctc 117590
||||||| ||||||||||||||||||
Sbjct: 554 cagctcaaggtcgaggtgcaggagctc 580
>ISMex38
Length = 3841
Score = 38.2 bits (19), Expect = 4.2
Identities = 28/31 (90%)
Strand = Plus / Plus
Query: 110534 ccggcggccgtgacgttgtcgatcttctcct 110564
|||||||||| | || |||||||||||||||
Sbjct: 352 ccggcggccgagccggtgtcgatcttctcct 382
>ISThsp19
Length = 2657
Score = 38.2 bits (19), Expect = 4.2
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 22815 tcgagcacccgctgcaggccgagggca 22841
||||||| | |||||||||||||||||
Sbjct: 1770 tcgagcatctgctgcaggccgagggca 1796
>ISThsp12
Length = 2004
Score = 38.2 bits (19), Expect = 4.2
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 148477 acgctggcccggctggagcccgg 148499
||||||| |||||||||||||||
Sbjct: 273 acgctgggccggctggagcccgg 295
>ISCARN89
Length = 2461
Score = 38.2 bits (19), Expect = 4.2
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 91937 ccacctgacattgcacacc 91955
|||||||||||||||||||
Sbjct: 520 ccacctgacattgcacacc 502
>ISAzo35
Length = 1451
Score = 38.2 bits (19), Expect = 4.2
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 84575 ggccacacgcaccagctcgggca 84597
|||||| ||||||||||||||||
Sbjct: 1054 ggccacgcgcaccagctcgggca 1032
>ISAzo30
Length = 1100
Score = 38.2 bits (19), Expect = 4.2
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 27703 atcgacgggcacccgccgatgga 27725
|||||||||||| ||||||||||
Sbjct: 317 atcgacgggcactcgccgatgga 339
>ISCARN23
Length = 1907
Score = 38.2 bits (19), Expect = 4.2
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 41143 cgacccggaggccgccgcc 41161
|||||||||||||||||||
Sbjct: 1161 cgacccggaggccgccgcc 1179
>ISCARN22
Length = 2674
Score = 38.2 bits (19), Expect = 4.2
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 11190 tgttgcgcaggccacgccg 11208
|||||||||||||||||||
Sbjct: 1766 tgttgcgcaggccacgccg 1748
>ISRosp4
Length = 2709
Score = 38.2 bits (19), Expect = 4.2
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 180884 ctcggcaggctgtccggca 180902
|||||||||||||||||||
Sbjct: 1340 ctcggcaggctgtccggca 1322
>ISAnsp3
Length = 2518
Score = 38.2 bits (19), Expect = 4.2
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 11310 cggcgatccggtccgcctc 11328
|||||||||||||||||||
Sbjct: 1139 cggcgatccggtccgcctc 1121
>ISApr5
Length = 806
Score = 38.2 bits (19), Expect = 4.2
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 11803 ggcttcgtgcgcccggacg 11821
|||||||||||||||||||
Sbjct: 769 ggcttcgtgcgcccggacg 787
>ISAzca1
Length = 4520
Score = 38.2 bits (19), Expect = 4.2
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 14519 caccctgcgggtgcccgaggcgc 14541
|||||||||||||||| ||||||
Sbjct: 259 caccctgcgggtgcccaaggcgc 237
>ISLxc4
Length = 1311
Score = 38.2 bits (19), Expect = 4.2
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 126074 gagctcgccctcgtcgccg 126092
|||||||||||||||||||
Sbjct: 1173 gagctcgccctcgtcgccg 1191
>ISPa25
Length = 1410
Score = 38.2 bits (19), Expect = 4.2
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 891 agcagccgctgcagctgct 909
|||||||||||||||||||
Sbjct: 655 agcagccgctgcagctgct 637
>ISPosp5
Length = 1262
Score = 38.2 bits (19), Expect = 4.2
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 170013 cgcagccagcaggcacccg 170031
|||||||||||||||||||
Sbjct: 474 cgcagccagcaggcacccg 492
>ISFsp1
Length = 1732
Score = 38.2 bits (19), Expect = 4.2
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 73552 gtcctcgatggtggccgcg 73570
|||||||||||||||||||
Sbjct: 1086 gtcctcgatggtggccgcg 1068
>ISH22
Length = 1700
Score = 38.2 bits (19), Expect = 4.2
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 28951 ctcgcccgcgagtacgagg 28969
|||||||||||||||||||
Sbjct: 598 ctcgcccgcgagtacgagg 616
>ISAzo4
Length = 2757
Score = 38.2 bits (19), Expect = 4.2
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 21985 ctcgctcgcccgggcgctg 22003
|||||||||||||||||||
Sbjct: 822 ctcgctcgcccgggcgctg 840
>IS883
Length = 2461
Score = 38.2 bits (19), Expect = 4.2
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 84243 ggcgtggagctggaccgca 84261
|||||||||||||||||||
Sbjct: 1483 ggcgtggagctggaccgca 1501
>ISUnCu1
Length = 1381
Score = 38.2 bits (19), Expect = 4.2
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 126999 gcgagcgggttcaccagcccgag 127021
||||||||||| |||||||||||
Sbjct: 553 gcgagcgggttgaccagcccgag 575
>ISMmg1
Length = 1359
Score = 38.2 bits (19), Expect = 4.2
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 2380 gaccggcgcatcgccgcgc 2398
|||||||||||||||||||
Sbjct: 652 gaccggcgcatcgccgcgc 670
>ISBlo9
Length = 1226
Score = 38.2 bits (19), Expect = 4.2
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 49312 cgaagatcgaccggctgctcgac 49334
||||||||||| |||||||||||
Sbjct: 936 cgaagatcgacgggctgctcgac 958
>ISPa42
Length = 16941
Score = 38.2 bits (19), Expect = 4.2
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 133992 atgaggacggcgacggcggcgac 134014
||||||||||||||||| |||||
Sbjct: 15586 atgaggacggcgacggccgcgac 15608
>ISHs1
Length = 1449
Score = 38.2 bits (19), Expect = 4.2
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 14888 cctcggcagcctgctcggc 14906
|||||||||||||||||||
Sbjct: 1188 cctcggcagcctgctcggc 1170
>ISH6
Length = 1448
Score = 38.2 bits (19), Expect = 4.2
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 14888 cctcggcagcctgctcggc 14906
|||||||||||||||||||
Sbjct: 1187 cctcggcagcctgctcggc 1169
>IS1141
Length = 1588
Score = 38.2 bits (19), Expect = 4.2
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 148781 ctgctcgccgacctcggcg 148799
|||||||||||||||||||
Sbjct: 1167 ctgctcgccgacctcggcg 1185
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_9_length_194487_cov_96.9813_ID_5186
(194,487 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISRfsp1 | IS66 | ISBst12 | Roseiflexus sp. | 46 | 0.017 |
| ISMsm3 | IS1380 | Mycobacterium smegmatis | 44 | 0.068 | |
| ISAcp1 | IS5 | IS5 | Acidobacterium capsulatum | 42 | 0.27 |
| ISPfr3 | ISL3 | Propionibacterium freudenreichii | 42 | 0.27 | |
| ISFsp11 | IS66 | ISBst12 | Frankia sp. | 42 | 0.27 |
| ISAusp1 | IS1595 | ISNha5 | Aurantimonas sp. | 42 | 0.27 |
| IS1632 | IS256 | - | Bradyrhizobium japonicum | 42 | 0.27 |
| IS1141 | IS3 | IS3 | Mycobacterium intracellulare | 42 | 0.27 |
| ISMyo1 | IS256 | Mycobacterium yongonense | 40 | 1.1 | |
| ISAzs34 | ISNCY | IS892 | Azospirillum sp. | 40 | 1.1 |
| ISAzs10 | IS5 | Azospirillum sp. | 40 | 1.1 | |
| ISSsv1 | IS5 | IS427 | Streptomyces sviceus | 40 | 1.1 |
| ISUnCu14 | IS66 | Uncultured bacterium | 40 | 1.1 | |
| ISDeac1 | IS1380 | Delftia acidovorans | 40 | 1.1 | |
| ISRce1 | ISAs1 | Rhodospirillum centenum | 40 | 1.1 | |
| ISCARN80 | IS110 | IS1111 | Metagenomic data from CARNOULES | 40 | 1.1 |
| ISAnsp2 | IS481 | Anaeromyxobacter sp. | 40 | 1.1 | |
| ISSer1 | IS110 | Saccharopolyspora erythraea | 40 | 1.1 | |
| ISSgr1 | IS110 | IS1111 | Streptomyces griseus | 40 | 1.1 |
| ISSam1 | IS110 | Streptomyces ambofaciens | 40 | 1.1 | |
| ISMxa1 | IS3 | IS3 | Myxococcus xanthus | 40 | 1.1 |
| ISOan3 | IS256 | Octadecabacter antarcticus | 40 | 1.1 | |
| IS110 | IS110 | - | Streptomyces coelicolor | 40 | 1.1 |
| ISGrh1 | ISNCY | ISDol1 | Gordonia rhizosphera | 38 | 4.2 |
| ISShdy2 | IS66 | Shigella dysenteriae | 38 | 4.2 | |
| ISRsp13 | IS5 | Rhizhobium sp. | 38 | 4.2 | |
| TnAs1 | Tn3 | Aeromonas salmonicida | 38 | 4.2 | |
| TnAs2 | Tn3 | Aeromonas salmonicida | 38 | 4.2 | |
| ISStvi1 | ISAzo13 | Streptomyces violaceusniger | 38 | 4.2 | |
| ISGob7 | ISKra4 | ISKra4 | Gemmata obscuriglobus | 38 | 4.2 |
| ISTco2 | ISLre2 | Thermobacillus composti | 38 | 4.2 | |
| ISBsa1 | IS256 | Blastococcus saxobsidens | 38 | 4.2 | |
| ISHme2 | IS4 | ISH8 | Haloferax mediterranei | 38 | 4.2 |
| ISGte1 | IS256 | Gordonia terrae | 38 | 4.2 | |
| ISApr14 | IS256 | alpha proteobacterium | 38 | 4.2 | |
| ISMrh1 | IS256 | Mycobacterium rhodesiae | 38 | 4.2 | |
| ISRjo4 | IS256 | Rhodococcus jostii | 38 | 4.2 | |
| ISDsp5 | IS3 | IS407 | Dehalococcoides sp. | 38 | 4.2 |
| ISMgi2 | IS1182 | Mycobacterium gilvum | 38 | 4.2 | |
| ISButh5 | IS5 | Burkholderia thailandensis | 38 | 4.2 | |
| ISRssp11 | IS5 | Roseovarius sp. | 38 | 4.2 | |
| ISRsp17 | ISNCY | ISDol1 | Rhizobium sp. | 38 | 4.2 |
| ISFsp13 | ISAzo13 | Frankia sp. | 38 | 4.2 | |
| ISMpo9 | IS701 | Methylobacterium populi | 38 | 4.2 | |
| ISMno13 | IS66 | Methylobacterium nodulans | 38 | 4.2 | |
| ISArsp6 | Tn3 | Arthrobacter sp. | 38 | 4.2 | |
| ISAau2 | IS21 | Arthrobacter aurescens | 38 | 4.2 | |
| ISGosp1 | IS1380 | Gordonia sp. | 38 | 4.2 | |
| ISSyth1 | IS1182 | Symbiobacterium thermophilum | 38 | 4.2 | |
| ISCc5 | IS1182 | Caulobacter crescentus | 38 | 4.2 | |
| ISAde3 | IS3 | IS407 | Anaeromyxobacter dehalogenans | 38 | 4.2 |
| ISAnsp11 | IS3 | IS3 | Anaeromyxobacter sp. | 38 | 4.2 |
| ISMdi14 | IS110 | IS1111 | Methylobacterium dichloromethanicum | 38 | 4.2 |
| ISMdi18 | IS1595 | ISNwi1 | Methylobacterium dichloromethanicum | 38 | 4.2 |
| ISMsi1 | IS21 | Methylocella silvestris | 38 | 4.2 | |
| ISMdi24 | IS5 | IS427 | Methylobacterium dichloromethanicum | 38 | 4.2 |
| ISMex38 | Tn3 | Methylobacterium extorquens | 38 | 4.2 | |
| ISAnsp5 | IS21 | Anaeromyxobacter sp. | 38 | 4.2 | |
| ISAnsp4 | IS21 | Anaeromyxobacter sp. | 38 | 4.2 | |
| ISJs1 | IS481 | Janibacter sp. | 38 | 4.2 | |
| ISBusp1 | Tn3 | Burkholderia sp. | 38 | 4.2 | |
| ISPpu21 | IS5 | IS5 | Pseudomonas putida | 38 | 4.2 |
| ISCARN94 | IS1595 | IS1595 | Metagenomic data from CARNOULES | 38 | 4.2 |
| ISAzo33 | IS630 | Azoarcus sp. | 38 | 4.2 | |
| ISBj5_B | IS5 | IS5 | Bradyrhizobium japonicum | 38 | 4.2 |
| ISCARN32 | IS110 | IS1111 | Metagenomic data from CARNOULES | 38 | 4.2 |
| ISCARN26 | IS110 | Metagenomic data from CARNOULES | 38 | 4.2 | |
| ISAzo10 | IS3 | IS3 | Azoarcus sp. | 38 | 4.2 |
| ISSav7 | IS481 | Streptomyces avermitilis | 38 | 4.2 | |
| ISRhsp5 | IS66 | Rhodobacter sphaeroides | 38 | 4.2 | |
| ISDds1 | IS3 | IS3 | Deinococcus deserti | 38 | 4.2 |
| ISBrsp5 | IS66 | ISBst12 | Bradyrhizobium sp. | 38 | 4.2 |
| ISAau4 | Tn3 | Arthrobacter aurescens | 38 | 4.2 | |
| ISAzca1 | IS1595 | ISNha5 | Azorhizobium caulinodans | 38 | 4.2 |
| ISDge3 | IS1 | Deinococcus geothermalis | 38 | 4.2 | |
| ISSod25 | IS91 | Shewanella oneidensis | 38 | 4.2 | |
| ISDsp2 | IS3 | IS407 | Dehalococcoides sp. | 38 | 4.2 |
| ISFsp8 | IS3 | IS3 | Frankia sp. | 38 | 4.2 |
| ISHma1 | IS4 | ISH8 | Haloarcula marismortui | 38 | 4.2 |
| ISCsp1 | IS256 | Comamonas sp | 38 | 4.2 | |
| ISMyma5 | IS481 | - | Mycobacterium marinum | 38 | 4.2 |
| ISMyma2 | IS1380 | Mycobacterium marinum | 38 | 4.2 | |
| ISAzo6 | IS1634 | Azoarcus sp. | 38 | 4.2 | |
| ISMyca1 | IS1634 | Mycobacterium canettii | 38 | 4.2 | |
| ISMpa1 | IS110 | Mycobacterium avium | 38 | 4.2 | |
| ISBlo2 | IS21 | Bifidobacterium longum | 38 | 4.2 | |
| ISRso9 | IS5 | IS5 | Ralstonia solanacearum | 38 | 4.2 |
| ISPa42 | Tn3 | Pseudomonas aeruginosa | 38 | 4.2 | |
| IS511 | IS3 | IS407 | Caulobacter crescentus | 38 | 4.2 |
| IS1471 | IS630 | - | Burkholderia cepacia | 38 | 4.2 |
| IS1354 | IS256 | - | Methylobacterium dichloromethanicum | 38 | 4.2 |
| IS1121 | IS481 | - | Clavibacter michiganensis | 38 | 4.2 |
| IS1110 | IS110 | - | Mycobacterium avium | 38 | 4.2 |
>ISRfsp1
Length = 1503
Score = 46.1 bits (23), Expect = 0.017
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 85074 cgtcttcgccacgctgcgcgacc 85096
|||||||||||||||||||||||
Sbjct: 1432 cgtcttcgccacgctgcgcgacc 1454
>ISMsm3
Length = 1695
Score = 44.1 bits (22), Expect = 0.068
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 53204 ctccctgctcgcggccggcgtcggcg 53229
||||||||||||||| ||||||||||
Sbjct: 880 ctccctgctcgcggcaggcgtcggcg 855
>ISAcp1
Length = 1483
Score = 42.1 bits (21), Expect = 0.27
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 88640 cggccgcgagcagggcgttga 88660
|||||||||||||||||||||
Sbjct: 1331 cggccgcgagcagggcgttga 1311
>ISPfr3
Length = 1457
Score = 42.1 bits (21), Expect = 0.27
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 185592 ctgatcgacgaggagcaccgc 185612
|||||||||||||||||||||
Sbjct: 594 ctgatcgacgaggagcaccgc 614
>ISFsp11
Length = 1836
Score = 42.1 bits (21), Expect = 0.27
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 70056 cccggcctggtcctggctcgccgtctcgc 70084
||||||||||||||||| ||||| |||||
Sbjct: 1480 cccggcctggtcctggcccgccggctcgc 1508
>ISAusp1
Length = 3418
Score = 42.1 bits (21), Expect = 0.27
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 184112 cgccgcgagcgccgtggtcgg 184132
|||||||||||||||||||||
Sbjct: 145 cgccgcgagcgccgtggtcgg 165
>IS1632
Length = 1394
Score = 42.1 bits (21), Expect = 0.27
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 153555 cagcgccgagagcgcgtcctggaag 153579
||||||||||||||| |||||||||
Sbjct: 505 cagcgccgagagcgcctcctggaag 481
>IS1141
Length = 1588
Score = 42.1 bits (21), Expect = 0.27
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 86863 ctgggtgaggccgaggtcggcgagc 86887
|||||||| ||||||||||||||||
Sbjct: 1193 ctgggtgacgccgaggtcggcgagc 1169
>ISMyo1
Length = 1472
Score = 40.1 bits (20), Expect = 1.1
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 118772 gccgagctgatggcccgcga 118791
||||||||||||||||||||
Sbjct: 637 gccgagctgatggcccgcga 656
>ISAzs34
Length = 1650
Score = 40.1 bits (20), Expect = 1.1
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 120471 gggacgggtcctgctggccc 120490
||||||||||||||||||||
Sbjct: 583 gggacgggtcctgctggccc 602
>ISAzs10
Length = 1307
Score = 40.1 bits (20), Expect = 1.1
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 91474 ggcggcggcggtcagggtga 91493
||||||||||||||||||||
Sbjct: 1116 ggcggcggcggtcagggtga 1097
>ISSsv1
Length = 967
Score = 40.1 bits (20), Expect = 1.1
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 104899 gccccacccggcgaccatga 104918
||||||||||||||||||||
Sbjct: 924 gccccacccggcgaccatga 943
>ISUnCu14
Length = 2442
Score = 40.1 bits (20), Expect = 1.1
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 22321 ccccggcgccggcgcggctg 22340
||||||||||||||||||||
Sbjct: 1372 ccccggcgccggcgcggctg 1391
>ISDeac1
Length = 1736
Score = 40.1 bits (20), Expect = 1.1
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 58031 ccgctggcgcagcaggtcgacgac 58054
||||||||||||||| ||||||||
Sbjct: 320 ccgctggcgcagcagatcgacgac 297
>ISRce1
Length = 1267
Score = 40.1 bits (20), Expect = 1.1
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 36533 cggcgccctcgtctccatcg 36552
||||||||||||||||||||
Sbjct: 622 cggcgccctcgtctccatcg 641
>ISCARN80
Length = 1409
Score = 40.1 bits (20), Expect = 1.1
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 166345 gccgccgtggctctggcggacaag 166368
|||||||||||||||||| |||||
Sbjct: 1020 gccgccgtggctctggcgaacaag 1043
>ISAnsp2
Length = 1298
Score = 40.1 bits (20), Expect = 1.1
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 16086 gccggcgcccagcggcacga 16105
||||||||||||||||||||
Sbjct: 397 gccggcgcccagcggcacga 416
>ISSer1
Length = 1447
Score = 40.1 bits (20), Expect = 1.1
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 71149 cgccaggccggtcgcgtcgtgcgc 71172
||||||||||||||||| ||||||
Sbjct: 302 cgccaggccggtcgcgtggtgcgc 279
>ISSgr1
Length = 1544
Score = 40.1 bits (20), Expect = 1.1
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 181304 atggtccgtgccgcgtcggcgatg 181327
||||||||||| ||||||||||||
Sbjct: 623 atggtccgtgcggcgtcggcgatg 600
>ISSam1
Length = 1489
Score = 40.1 bits (20), Expect = 1.1
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 6669 ggcgatgcgccggatcgccg 6688
||||||||||||||||||||
Sbjct: 530 ggcgatgcgccggatcgccg 549
Score = 38.2 bits (19), Expect = 4.2
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 37020 gccctcctccgcctcgccc 37038
|||||||||||||||||||
Sbjct: 1371 gccctcctccgcctcgccc 1389
>ISMxa1
Length = 1292
Score = 40.1 bits (20), Expect = 1.1
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 186176 cgaagcgcgcggtcgcggac 186195
||||||||||||||||||||
Sbjct: 499 cgaagcgcgcggtcgcggac 518
>ISOan3
Length = 1437
Score = 40.1 bits (20), Expect = 1.1
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 176317 ggcctcctcgggtggcttcc 176336
||||||||||||||||||||
Sbjct: 422 ggcctcctcgggtggcttcc 441
>IS110
Length = 1558
Score = 40.1 bits (20), Expect = 1.1
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 117398 ctgctggagcgctacggctc 117417
||||||||||||||||||||
Sbjct: 817 ctgctggagcgctacggctc 836
Score = 38.2 bits (19), Expect = 4.2
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 37020 gccctcctccgcctcgccc 37038
|||||||||||||||||||
Sbjct: 1378 gccctcctccgcctcgccc 1396
>ISGrh1
Length = 1673
Score = 38.2 bits (19), Expect = 4.2
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 52835 agcccagctcgccgagggc 52853
|||||||||||||||||||
Sbjct: 1108 agcccagctcgccgagggc 1126
>ISShdy2
Length = 2496
Score = 38.2 bits (19), Expect = 4.2
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 30289 gccacccggcgcgctcgtc 30307
|||||||||||||||||||
Sbjct: 2123 gccacccggcgcgctcgtc 2105
>ISRsp13
Length = 1353
Score = 38.2 bits (19), Expect = 4.2
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 116487 gcacgcgctcgatgccgcg 116505
|||||||||||||||||||
Sbjct: 1185 gcacgcgctcgatgccgcg 1167
>TnAs1
Length = 6694
Score = 38.2 bits (19), Expect = 4.2
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 21794 cgccgcgggcatcgcgacgttcg 21816
|||||| ||||||||||||||||
Sbjct: 2364 cgccgcaggcatcgcgacgttcg 2386
>TnAs2
Length = 8650
Score = 38.2 bits (19), Expect = 4.2
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 15181 gccggactcgccgacgacc 15199
|||||||||||||||||||
Sbjct: 4530 gccggactcgccgacgacc 4548
>ISStvi1
Length = 1738
Score = 38.2 bits (19), Expect = 4.2
Identities = 28/31 (90%)
Strand = Plus / Minus
Query: 172655 cccgcggcggccgaggacggtggcctcactg 172685
||||| |||||||||||| || |||||||||
Sbjct: 189 cccgccgcggccgaggaccgtcgcctcactg 159
>ISGob7
Length = 1463
Score = 38.2 bits (19), Expect = 4.2
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 77779 ccgctcggtcctggccgcg 77797
|||||||||||||||||||
Sbjct: 691 ccgctcggtcctggccgcg 673
>ISTco2
Length = 1593
Score = 38.2 bits (19), Expect = 4.2
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 148892 gctggccgaacaggacgcagccg 148914
||||||| |||||||||||||||
Sbjct: 963 gctggccaaacaggacgcagccg 985
>ISBsa1
Length = 1464
Score = 38.2 bits (19), Expect = 4.2
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 134315 ctgcaggccggcgccgacc 134333
|||||||||||||||||||
Sbjct: 256 ctgcaggccggcgccgacc 238
>ISHme2
Length = 1403
Score = 38.2 bits (19), Expect = 4.2
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 124553 ctcgtcgagcccggcctcgacga 124575
|||||||||| ||||||||||||
Sbjct: 368 ctcgtcgagcacggcctcgacga 390
>ISGte1
Length = 1503
Score = 38.2 bits (19), Expect = 4.2
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 176884 tcgaccgcgtcgacgacctcgtc 176906
||||||||||||| |||||||||
Sbjct: 602 tcgaccgcgtcgaggacctcgtc 580
>ISApr14
Length = 1316
Score = 38.2 bits (19), Expect = 4.2
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 153879 gctcaggaaccgggccgtcgagg 153901
|||||||||||||| ||||||||
Sbjct: 711 gctcaggaaccggggcgtcgagg 733
>ISMrh1
Length = 1472
Score = 38.2 bits (19), Expect = 4.2
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 172714 gcgccggctcggacgagggcgac 172736
|||||||| ||||||||||||||
Sbjct: 1351 gcgccggcacggacgagggcgac 1329
>ISRjo4
Length = 1458
Score = 38.2 bits (19), Expect = 4.2
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 117666 aggcggaggtggccgccta 117684
|||||||||||||||||||
Sbjct: 227 aggcggaggtggccgccta 245
>ISDsp5
Length = 1210
Score = 38.2 bits (19), Expect = 4.2
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 147653 tctggggcaccttcagccc 147671
|||||||||||||||||||
Sbjct: 630 tctggggcaccttcagccc 612
>ISMgi2
Length = 1770
Score = 38.2 bits (19), Expect = 4.2
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 14930 acccggcggatcgcggcga 14948
|||||||||||||||||||
Sbjct: 574 acccggcggatcgcggcga 556
>ISButh5
Length = 1350
Score = 38.2 bits (19), Expect = 4.2
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 65996 gttcttccagaacaccgagtggt 66018
||||||| |||||||||||||||
Sbjct: 422 gttcttcgagaacaccgagtggt 400
>ISRssp11
Length = 1356
Score = 38.2 bits (19), Expect = 4.2
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 116487 gcacgcgctcgatgccgcg 116505
|||||||||||||||||||
Sbjct: 1187 gcacgcgctcgatgccgcg 1169
>ISRsp17
Length = 1664
Score = 38.2 bits (19), Expect = 4.2
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 173511 tcctcgacctcgtcatcga 173529
|||||||||||||||||||
Sbjct: 1071 tcctcgacctcgtcatcga 1089
>ISFsp13
Length = 1724
Score = 38.2 bits (19), Expect = 4.2
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 125649 gcggtgagccgctcggcgagccg 125671
||||||||| |||||||||||||
Sbjct: 437 gcggtgagctgctcggcgagccg 415
>ISMpo9
Length = 1413
Score = 38.2 bits (19), Expect = 4.2
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 123724 cggggtcgagcaggtcgcgcagg 123746
|||||||||||||| ||||||||
Sbjct: 187 cggggtcgagcaggccgcgcagg 165
>ISMno13
Length = 2459
Score = 38.2 bits (19), Expect = 4.2
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 68257 cgacctcgacgagcacgtgctcgtcgc 68283
|||||||| || |||||||||||||||
Sbjct: 1441 cgacctcgtcgcgcacgtgctcgtcgc 1467
>ISArsp6
Length = 26712
Score = 38.2 bits (19), Expect = 4.2
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 76014 cggctgccgagcgcggcca 76032
|||||||||||||||||||
Sbjct: 23735 cggctgccgagcgcggcca 23753
>ISAau2
Length = 2222
Score = 38.2 bits (19), Expect = 4.2
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 10345 tgccgacgatgccggcgac 10363
|||||||||||||||||||
Sbjct: 308 tgccgacgatgccggcgac 326
>ISGosp1
Length = 1642
Score = 38.2 bits (19), Expect = 4.2
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 16285 gctccggcgcggcgggcgatggc 16307
|||||||||||||||||| ||||
Sbjct: 782 gctccggcgcggcgggcggtggc 760
>ISSyth1
Length = 1527
Score = 38.2 bits (19), Expect = 4.2
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 29087 ggcatcgacgacggcctgg 29105
|||||||||||||||||||
Sbjct: 941 ggcatcgacgacggcctgg 923
>ISCc5
Length = 1577
Score = 38.2 bits (19), Expect = 4.2
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 104452 gacgccgaccttgccgcgc 104470
|||||||||||||||||||
Sbjct: 1507 gacgccgaccttgccgcgc 1525
>ISAde3
Length = 1183
Score = 38.2 bits (19), Expect = 4.2
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 134351 gcgctcgaggacgcggacg 134369
|||||||||||||||||||
Sbjct: 827 gcgctcgaggacgcggacg 809
>ISAnsp11
Length = 1510
Score = 38.2 bits (19), Expect = 4.2
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 73013 cgcgctcgagccgcgcccgccgc 73035
||||||| |||||||||||||||
Sbjct: 563 cgcgctcaagccgcgcccgccgc 585
>ISMdi14
Length = 1316
Score = 38.2 bits (19), Expect = 4.2
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 9434 cgggctgtccgccgccatg 9452
|||||||||||||||||||
Sbjct: 598 cgggctgtccgccgccatg 616
>ISMdi18
Length = 3479
Score = 38.2 bits (19), Expect = 4.2
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 52786 tcgagcgggccgagcgggc 52804
|||||||||||||||||||
Sbjct: 917 tcgagcgggccgagcgggc 935
>ISMsi1
Length = 2307
Score = 38.2 bits (19), Expect = 4.2
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 74114 tcggcacgatgcgcgacgt 74132
|||||||||||||||||||
Sbjct: 849 tcggcacgatgcgcgacgt 867
>ISMdi24
Length = 849
Score = 38.2 bits (19), Expect = 4.2
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 66608 ggcctccgtcagcgtcaggccga 66630
|||| ||||||||||||||||||
Sbjct: 483 ggcccccgtcagcgtcaggccga 461
>ISMex38
Length = 3841
Score = 38.2 bits (19), Expect = 4.2
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 132171 cctcgaggagaagatcgac 132189
|||||||||||||||||||
Sbjct: 387 cctcgaggagaagatcgac 369
>ISAnsp5
Length = 2192
Score = 38.2 bits (19), Expect = 4.2
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 28728 gcggaggcggtcaggcaga 28746
|||||||||||||||||||
Sbjct: 132 gcggaggcggtcaggcaga 150
>ISAnsp4
Length = 2195
Score = 38.2 bits (19), Expect = 4.2
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 170619 cgccgcgatccgcgaccggctcc 170641
||||||||||| |||||||||||
Sbjct: 2014 cgccgcgatcctcgaccggctcc 2036
>ISJs1
Length = 1104
Score = 38.2 bits (19), Expect = 4.2
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 136868 ccctcgacgacgaagcgga 136886
|||||||||||||||||||
Sbjct: 330 ccctcgacgacgaagcgga 348
>ISBusp1
Length = 3169
Score = 38.2 bits (19), Expect = 4.2
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 55821 ctcgagaacggcgtcggcg 55839
|||||||||||||||||||
Sbjct: 1967 ctcgagaacggcgtcggcg 1949
>ISPpu21
Length = 1190
Score = 38.2 bits (19), Expect = 4.2
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 50599 gctggagcgccacgagctg 50617
|||||||||||||||||||
Sbjct: 391 gctggagcgccacgagctg 409
>ISCARN94
Length = 1048
Score = 38.2 bits (19), Expect = 4.2
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 181835 gacgcgcccgtcgagcacg 181853
|||||||||||||||||||
Sbjct: 512 gacgcgcccgtcgagcacg 494
>ISAzo33
Length = 1100
Score = 38.2 bits (19), Expect = 4.2
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 159011 gctcggtcggtgcgaaggt 159029
|||||||||||||||||||
Sbjct: 724 gctcggtcggtgcgaaggt 742
>ISBj5_B
Length = 1524
Score = 38.2 bits (19), Expect = 4.2
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 188363 ctcgatcccgggcctgccg 188381
|||||||||||||||||||
Sbjct: 343 ctcgatcccgggcctgccg 325
>ISCARN32
Length = 1151
Score = 38.2 bits (19), Expect = 4.2
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 150541 cggcagcatgatgccgaac 150559
|||||||||||||||||||
Sbjct: 507 cggcagcatgatgccgaac 489
>ISCARN26
Length = 1214
Score = 38.2 bits (19), Expect = 4.2
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 6834 cggcagcacgacgacgtcgacgccgag 6860
||||||| |||||||||||| ||||||
Sbjct: 748 cggcagctcgacgacgtcgatgccgag 774
>ISAzo10
Length = 1669
Score = 38.2 bits (19), Expect = 4.2
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 12899 gctggccgacgaaggcgtc 12917
|||||||||||||||||||
Sbjct: 826 gctggccgacgaaggcgtc 844
>ISSav7
Length = 2992
Score = 38.2 bits (19), Expect = 4.2
Identities = 28/31 (90%)
Strand = Plus / Plus
Query: 55662 cagcagctcggcggacgcctcgacgaggcgg 55692
|||||||||| ||| ||||||||||| ||||
Sbjct: 848 cagcagctcgacggccgcctcgacgatgcgg 878
>ISRhsp5
Length = 2528
Score = 38.2 bits (19), Expect = 4.2
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 38928 cccccgtgctggcgcccgg 38946
|||||||||||||||||||
Sbjct: 1694 cccccgtgctggcgcccgg 1712
>ISDds1
Length = 1248
Score = 38.2 bits (19), Expect = 4.2
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 50955 gactgcgccccgtggtccgcacc 50977
|||||| ||||||||||||||||
Sbjct: 676 gactgctccccgtggtccgcacc 654
>ISBrsp5
Length = 1541
Score = 38.2 bits (19), Expect = 4.2
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 87700 atctggagcgccggcttgg 87718
|||||||||||||||||||
Sbjct: 181 atctggagcgccggcttgg 199
>ISAau4
Length = 3898
Score = 38.2 bits (19), Expect = 4.2
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 145323 tcacgagcagctcgcgcagcacc 145345
||||||||||| |||||||||||
Sbjct: 693 tcacgagcagcccgcgcagcacc 671
>ISAzca1
Length = 4520
Score = 38.2 bits (19), Expect = 4.2
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 120604 agccagagcggagccgacc 120622
|||||||||||||||||||
Sbjct: 2235 agccagagcggagccgacc 2217
>ISDge3
Length = 748
Score = 38.2 bits (19), Expect = 4.2
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 175928 ggcgaggtggttgtggatc 175946
|||||||||||||||||||
Sbjct: 381 ggcgaggtggttgtggatc 399
>ISSod25
Length = 2314
Score = 38.2 bits (19), Expect = 4.2
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 80706 cccagcggtcgcaggcacc 80724
|||||||||||||||||||
Sbjct: 570 cccagcggtcgcaggcacc 552
>ISDsp2
Length = 1210
Score = 38.2 bits (19), Expect = 4.2
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 147653 tctggggcaccttcagccc 147671
|||||||||||||||||||
Sbjct: 630 tctggggcaccttcagccc 612
>ISFsp8
Length = 1297
Score = 38.2 bits (19), Expect = 4.2
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 147810 gtcgatgacgagctcggtgcgca 147832
|||||||| ||||||||||||||
Sbjct: 878 gtcgatgatgagctcggtgcgca 856
>ISHma1
Length = 1403
Score = 38.2 bits (19), Expect = 4.2
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 124553 ctcgtcgagcccggcctcgacga 124575
|||||||||| ||||||||||||
Sbjct: 391 ctcgtcgagcgcggcctcgacga 369
>ISCsp1
Length = 1393
Score = 38.2 bits (19), Expect = 4.2
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 55354 gccgcctcggcgctgggcg 55372
|||||||||||||||||||
Sbjct: 952 gccgcctcggcgctgggcg 934
>ISMyma5
Length = 1838
Score = 38.2 bits (19), Expect = 4.2
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 13828 accccgtggcggagcagcgcctc 13850
|||||||||||| ||||||||||
Sbjct: 771 accccgtggcggcgcagcgcctc 749
>ISMyma2
Length = 1679
Score = 38.2 bits (19), Expect = 4.2
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 176943 ccagccctcggcgaggttg 176961
|||||||||||||||||||
Sbjct: 947 ccagccctcggcgaggttg 929
>ISAzo6
Length = 1925
Score = 38.2 bits (19), Expect = 4.2
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 73124 cctcgggcaccgcgaccgtctcg 73146
||||||||| |||||||||||||
Sbjct: 584 cctcgggcagcgcgaccgtctcg 562
Score = 38.2 bits (19), Expect = 4.2
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 123672 gcccgctcgggggtgagcc 123690
|||||||||||||||||||
Sbjct: 1704 gcccgctcgggggtgagcc 1686
>ISMyca1
Length = 1968
Score = 38.2 bits (19), Expect = 4.2
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 183704 ccaccacgtcgtcgcggcc 183722
|||||||||||||||||||
Sbjct: 1445 ccaccacgtcgtcgcggcc 1427
>ISMpa1
Length = 1500
Score = 38.2 bits (19), Expect = 4.2
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 183212 tgtgggtcgaggcgctcac 183230
|||||||||||||||||||
Sbjct: 443 tgtgggtcgaggcgctcac 461
>ISBlo2
Length = 2455
Score = 38.2 bits (19), Expect = 4.2
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 97101 accgcccgcgtcaccgtgg 97119
|||||||||||||||||||
Sbjct: 447 accgcccgcgtcaccgtgg 429
>ISRso9
Length = 1483
Score = 38.2 bits (19), Expect = 4.2
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 58838 tcgcgggtgggtcgggtga 58856
|||||||||||||||||||
Sbjct: 777 tcgcgggtgggtcgggtga 795
>ISPa42
Length = 16941
Score = 38.2 bits (19), Expect = 4.2
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 23979 cgaggccaccatctcgttgaagcgcag 24005
|||||||||||| |||||| |||||||
Sbjct: 2908 cgaggccaccatgtcgttgtagcgcag 2882
>IS511
Length = 1266
Score = 38.2 bits (19), Expect = 4.2
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 125962 acaggccgacccgctgcgc 125980
|||||||||||||||||||
Sbjct: 1144 acaggccgacccgctgcgc 1162
>IS1471
Length = 1113
Score = 38.2 bits (19), Expect = 4.2
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 50112 gtcttgccctggttggtca 50130
|||||||||||||||||||
Sbjct: 716 gtcttgccctggttggtca 698
>IS1354
Length = 1431
Score = 38.2 bits (19), Expect = 4.2
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 152245 gaactcctcctgcaaccgctcga 152267
||||||||| |||||||||||||
Sbjct: 1204 gaactcctcgtgcaaccgctcga 1182
>IS1121
Length = 1068
Score = 38.2 bits (19), Expect = 4.2
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 138849 cccggtcaacggcgcaccg 138867
|||||||||||||||||||
Sbjct: 482 cccggtcaacggcgcaccg 500
>IS1110
Length = 1462
Score = 38.2 bits (19), Expect = 4.2
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 69976 tccccggccagctcggcgacgag 69998
||||||||||| |||||||||||
Sbjct: 973 tccccggccaggtcggcgacgag 951
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_10_length_182493_cov_61.6883_ID_5188
(182,493 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISPna3 | IS5 | IS5 | Polaromonas naphthalenivorans | 50 | 0.001 |
| ISStu2 | ISAzo13 | Streptomyces turgidiscabies | 44 | 0.064 | |
| ISRce2 | IS1182 | Rhodospirillum centenum | 42 | 0.25 | |
| ISOgr2 | IS3 | IS2 | Oceanicola granulosus | 42 | 0.25 |
| ISSav4 | IS701 | Streptomyces avermitilis | 42 | 0.25 | |
| ISSri1 | ISKra4 | ISKra4 | Streptomyces rimosus | 40 | 1.00 |
| ISBte1 | ISKra4 | ISAzba1 | Burkholderia terrae | 40 | 1.00 |
| ISAfe17 | IS3 | IS150 | Acidithiobacillus ferrivorans | 40 | 1.00 |
| ISGeob1 | IS5 | ISL2 | Geodermatophilus obscurus | 40 | 1.00 |
| ISMgi2 | IS1182 | Mycobacterium gilvum | 40 | 1.00 | |
| ISPpa7 | IS66 | Paracoccus pantotrophus | 40 | 1.00 | |
| ISXoo5 | IS5 | IS5 | Xanthomonas oryzae | 40 | 1.00 |
| ISMch8 | IS5 | IS5 | Methylobacterium chloromethanicum | 40 | 1.00 |
| ISAar34 | ISL3 | Arthrobacter arilaitensis | 40 | 1.00 | |
| ISOan2 | IS1380 | Octadecabacter antarcticus | 40 | 1.00 | |
| ISMex23 | IS200/IS605 | IS1341 | Methylobacterium extorquens | 40 | 1.00 |
| ISAzo33 | IS630 | Azoarcus sp. | 40 | 1.00 | |
| ISCARN22 | IS66 | Metagenomic data from CARNOULES | 40 | 1.00 | |
| ISFpe1 | IS66 | Fulvimarina pelagi | 40 | 1.00 | |
| ISRde3 | IS3 | IS407 | Roseobacter denitrificans | 40 | 1.00 |
| ISAzvi5 | IS4 | IS10 | Azotobacter vinelandii | 40 | 1.00 |
| ISRsp6 | IS4 | IS4Sa | Rhizobium sp. | 40 | 1.00 |
| ISBcen10 | IS3 | IS150 | Burkholderia cenocepacia | 40 | 1.00 |
| ISAav3 | IS5 | - | Acidovorax avenae | 40 | 1.00 |
| ISAav1 | IS21 | - | Acidovorax avenae | 40 | 1.00 |
| IS1372 | IS3 | IS51 | Streptomyces lividans | 40 | 1.00 |
| ISHti2 | IS200/IS605 | IS1341 | Halorhabdus tiamatea | 38 | 3.9 |
| TnAs1 | Tn3 | Aeromonas salmonicida | 38 | 3.9 | |
| ISNamo21 | IS200/IS605 | IS1341 | Natronomonas moolapensis | 38 | 3.9 |
| ISPa43 | Tn3 | Pseudomonas aeruginosa | 38 | 3.9 | |
| ISAzs25 | IS1380 | Azospirillum sp. | 38 | 3.9 | |
| ISAzs14 | IS630 | Azospirillum sp. | 38 | 3.9 | |
| ISNml3 | IS1182 | Nakamurella multipartita | 38 | 3.9 | |
| ISPko1 | IS5 | IS903 | Paracoccus kondratievae | 38 | 3.9 |
| ISHwa20 | IS5 | Haloquadratum walsbyi | 38 | 3.9 | |
| ISCfl1 | IS5 | Chthoniobacter flavus | 38 | 3.9 | |
| ISPfr2 | ISL3 | Propionibacterium freudenreichii | 38 | 3.9 | |
| ISArsp3 | IS110 | Arthrobacter sp. | 38 | 3.9 | |
| ISAau2 | IS21 | Arthrobacter aurescens | 38 | 3.9 | |
| ISGbr1 | IS1380 | Gordonia bronchialis | 38 | 3.9 | |
| ISMgi1 | IS1380 | Mycobacterium gilvum | 38 | 3.9 | |
| ISApr11 | IS1380 | Alpha proteobacterium | 38 | 3.9 | |
| ISAar11 | IS1380 | Arthrobacter arilaitensis | 38 | 3.9 | |
| ISAzo2 | IS1182 | Azoarcus sp. | 38 | 3.9 | |
| ISAde5 | IS256 | Anaeromyxobacter dehalogenans | 38 | 3.9 | |
| ISMdi14 | IS110 | IS1111 | Methylobacterium dichloromethanicum | 38 | 3.9 |
| ISMex24 | ISL3 | Methylobacterium extorquens | 38 | 3.9 | |
| ISSav5 | IS481 | Streptomyces avermitilis | 38 | 3.9 | |
| ISCARN62 | ISNCY | IS1202 | Metagenomic data from CARNOULES | 38 | 3.9 |
| ISAzo14 | IS1634 | Azoarcus sp. | 38 | 3.9 | |
| ISThsp9 | Tn3 | Thiomonas sp. | 38 | 3.9 | |
| ISThsp3 | IS66 | Thiomonas sp. | 38 | 3.9 | |
| ISAli20 | Tn3 | Azospirillum lipoferum | 38 | 3.9 | |
| ISGdi4 | IS630 | Gluconacetobacter diazotrophicus | 38 | 3.9 | |
| ISAli13 | IS21 | Azospirillum lipoferum | 38 | 3.9 | |
| ISGob3 | IS66 | ISBst12 | Gemmata obscuriglobus | 38 | 3.9 |
| ISBvi1 | IS4 | IS4 | Burkholderia vietnamiensis | 38 | 3.9 |
| ISFsp3 | IS21 | Frankia sp. | 38 | 3.9 | |
| ISBcen7 | IS3 | IS3 | Burkholderia cenocepacia | 38 | 3.9 |
| ISAzo6 | IS1634 | Azoarcus sp. | 38 | 3.9 | |
| ISLxx2 | IS110 | Leifsonia xyli | 38 | 3.9 | |
| ISSsp126 | IS5 | IS5 | Sphingomonas sp. | 38 | 3.9 |
| IS66 | IS66 | Agrobacterium tumefaciens | 38 | 3.9 | |
| IS1648 | IS5 | IS427 | Streptomyces coelicolor | 38 | 3.9 |
| IS1601 | IS256 | - | Mycobacterium avium | 38 | 3.9 |
| IS298 | IS5 | IS427 | Caulobacter crescentus | 38 | 3.9 |
| IS1415 | IS21 | - | Rhodococcus erythropolis | 38 | 3.9 |
| IS1122 | IS481 | - | Clavibacter michiganensis | 38 | 3.9 |
>ISPna3
Length = 1425
Score = 50.1 bits (25), Expect = 0.001
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 143015 ccatcgaagcggcccgcgcggccggcctg 143043
|||||||||||||||| ||||||||||||
Sbjct: 505 ccatcgaagcggcccgtgcggccggcctg 533
>ISStu2
Length = 1760
Score = 44.1 bits (22), Expect = 0.064
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 151687 gcagcacggtgacctggacccggtcg 151712
|||||||||||||| |||||||||||
Sbjct: 1528 gcagcacggtgaccaggacccggtcg 1503
>ISRce2
Length = 1528
Score = 42.1 bits (21), Expect = 0.25
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 86187 cgacgtcatggccgtcgagctggacgccg 86215
|||||||| |||||||| |||||||||||
Sbjct: 857 cgacgtcaaggccgtcgggctggacgccg 885
>ISOgr2
Length = 1299
Score = 42.1 bits (21), Expect = 0.25
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 168466 gccgtgggcgtgtccgaggatgacg 168490
||||||| |||||||||||||||||
Sbjct: 250 gccgtggccgtgtccgaggatgacg 274
>ISSav4
Length = 1426
Score = 42.1 bits (21), Expect = 0.25
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 82874 acgccgacttccgcgacggcc 82894
|||||||||||||||||||||
Sbjct: 663 acgccgacttccgcgacggcc 683
>ISSri1
Length = 2269
Score = 40.1 bits (20), Expect = 1.00
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 83 ccagccgcgacagatccttc 102
||||||||||||||||||||
Sbjct: 232 ccagccgcgacagatccttc 213
>ISBte1
Length = 2143
Score = 40.1 bits (20), Expect = 1.00
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 140189 cggcccagcagcgccttcgc 140208
||||||||||||||||||||
Sbjct: 861 cggcccagcagcgccttcgc 842
>ISAfe17
Length = 1334
Score = 40.1 bits (20), Expect = 1.00
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 29382 tcaggccccggatcgcctcc 29401
||||||||||||||||||||
Sbjct: 136 tcaggccccggatcgcctcc 117
>ISGeob1
Length = 1020
Score = 40.1 bits (20), Expect = 1.00
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 168709 gaggacgtcgatgcccttgt 168728
||||||||||||||||||||
Sbjct: 387 gaggacgtcgatgcccttgt 368
>ISMgi2
Length = 1770
Score = 40.1 bits (20), Expect = 1.00
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 66091 cgtcgagcagctggtcgcgggcgg 66114
|||||| |||||||||||||||||
Sbjct: 699 cgtcgaccagctggtcgcgggcgg 676
>ISPpa7
Length = 2731
Score = 40.1 bits (20), Expect = 1.00
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 34693 cgaccgcggcgatgcgcgcc 34712
||||||||||||||||||||
Sbjct: 1267 cgaccgcggcgatgcgcgcc 1248
>ISXoo5
Length = 1607
Score = 40.1 bits (20), Expect = 1.00
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 18484 ctgcccaccctgatgcagcgcgccgagc 18511
|||| ||| |||||||||||||||||||
Sbjct: 920 ctgcacacgctgatgcagcgcgccgagc 947
>ISMch8
Length = 1494
Score = 40.1 bits (20), Expect = 1.00
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 56982 tcctggccgccgtgctggcc 57001
||||||||||||||||||||
Sbjct: 451 tcctggccgccgtgctggcc 470
>ISAar34
Length = 1438
Score = 40.1 bits (20), Expect = 1.00
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 7117 ccagggccaccaccgcgtcc 7136
||||||||||||||||||||
Sbjct: 1161 ccagggccaccaccgcgtcc 1142
>ISOan2
Length = 1655
Score = 40.1 bits (20), Expect = 1.00
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 64499 tgtcggtggccgtgccgccgatgc 64522
||||||||||||||||| ||||||
Sbjct: 392 tgtcggtggccgtgccgtcgatgc 415
>ISMex23
Length = 1390
Score = 40.1 bits (20), Expect = 1.00
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 43071 tcgatctcggaggcgatggagacctgcc 43098
||||||||| |||||| |||||||||||
Sbjct: 618 tcgatctcgcaggcgaaggagacctgcc 591
>ISAzo33
Length = 1100
Score = 40.1 bits (20), Expect = 1.00
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 137535 cggcggcgagaacgccctgctcgc 137558
||||||| ||||||||||||||||
Sbjct: 215 cggcggccagaacgccctgctcgc 238
>ISCARN22
Length = 2674
Score = 40.1 bits (20), Expect = 1.00
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 28501 gtcgtcgccggggtgggcgc 28520
||||||||||||||||||||
Sbjct: 2105 gtcgtcgccggggtgggcgc 2124
>ISFpe1
Length = 2489
Score = 40.1 bits (20), Expect = 1.00
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 19124 ccggcacgttgaaggcgatgctga 19147
|||||||| |||||||||||||||
Sbjct: 978 ccggcacgctgaaggcgatgctga 1001
>ISRde3
Length = 908
Score = 40.1 bits (20), Expect = 1.00
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 148302 ccgccccgttgtcgctgacc 148321
||||||||||||||||||||
Sbjct: 586 ccgccccgttgtcgctgacc 567
>ISAzvi5
Length = 1328
Score = 40.1 bits (20), Expect = 1.00
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 114462 cgccgcagggccagctccag 114481
||||||||||||||||||||
Sbjct: 1273 cgccgcagggccagctccag 1254
>ISRsp6
Length = 1277
Score = 40.1 bits (20), Expect = 1.00
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 15906 gcatcaaggacgccgagggcgacg 15929
||||||||| ||||||||||||||
Sbjct: 762 gcatcaaggtcgccgagggcgacg 785
>ISBcen10
Length = 1447
Score = 40.1 bits (20), Expect = 1.00
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 94747 gcgccctcggcgacgaggcg 94766
||||||||||||||||||||
Sbjct: 395 gcgccctcggcgacgaggcg 376
>ISAav3
Length = 1321
Score = 40.1 bits (20), Expect = 1.00
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 107989 gccgcatcgcgctccgcggtgccg 108012
|||||||||||||| |||||||||
Sbjct: 804 gccgcatcgcgctcggcggtgccg 781
>ISAav1
Length = 2532
Score = 40.1 bits (20), Expect = 1.00
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 134621 atctcgtcgaggatgacgag 134640
||||||||||||||||||||
Sbjct: 2141 atctcgtcgaggatgacgag 2122
>IS1372
Length = 1304
Score = 40.1 bits (20), Expect = 1.00
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 78602 ccaggccgaggcggacgccg 78621
||||||||||||||||||||
Sbjct: 207 ccaggccgaggcggacgccg 226
>ISHti2
Length = 1616
Score = 38.2 bits (19), Expect = 3.9
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 53652 tcggcgacctcaccgacgt 53670
|||||||||||||||||||
Sbjct: 1114 tcggcgacctcaccgacgt 1132
>TnAs1
Length = 6694
Score = 38.2 bits (19), Expect = 3.9
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 14268 cggcgaactgctcggccggcagc 14290
||||||||| |||||||||||||
Sbjct: 5183 cggcgaacttctcggccggcagc 5161
>ISNamo21
Length = 1836
Score = 38.2 bits (19), Expect = 3.9
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 23502 gacctcgacgacgtcgagg 23520
|||||||||||||||||||
Sbjct: 1809 gacctcgacgacgtcgagg 1827
>ISPa43
Length = 19903
Score = 38.2 bits (19), Expect = 3.9
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 44293 tgccctcgatgccgtgctg 44311
|||||||||||||||||||
Sbjct: 12909 tgccctcgatgccgtgctg 12927
>ISAzs25
Length = 1614
Score = 38.2 bits (19), Expect = 3.9
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 149102 ggcccgccccatgcgcagc 149120
|||||||||||||||||||
Sbjct: 507 ggcccgccccatgcgcagc 489
>ISAzs14
Length = 1176
Score = 38.2 bits (19), Expect = 3.9
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 35485 cctcgcccgcggcgagagc 35503
|||||||||||||||||||
Sbjct: 152 cctcgcccgcggcgagagc 170
>ISNml3
Length = 1798
Score = 38.2 bits (19), Expect = 3.9
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 37935 cgtcggagatccggttcggcgac 37957
||||| |||||||||||||||||
Sbjct: 439 cgtcgaagatccggttcggcgac 417
Score = 38.2 bits (19), Expect = 3.9
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 152933 ggcgtgccgcgcctccggg 152951
|||||||||||||||||||
Sbjct: 912 ggcgtgccgcgcctccggg 894
>ISPko1
Length = 1050
Score = 38.2 bits (19), Expect = 3.9
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 32691 cgtcaccgccggcgcggtc 32709
|||||||||||||||||||
Sbjct: 744 cgtcaccgccggcgcggtc 762
>ISHwa20
Length = 1075
Score = 38.2 bits (19), Expect = 3.9
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 123886 tcttcgaccatctcgtcga 123904
|||||||||||||||||||
Sbjct: 393 tcttcgaccatctcgtcga 411
>ISCfl1
Length = 1338
Score = 38.2 bits (19), Expect = 3.9
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 43243 gagcgcccgggtgtggcgg 43261
|||||||||||||||||||
Sbjct: 1192 gagcgcccgggtgtggcgg 1210
>ISPfr2
Length = 1731
Score = 38.2 bits (19), Expect = 3.9
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 29967 tcggtgagcaccttgggga 29985
|||||||||||||||||||
Sbjct: 1230 tcggtgagcaccttgggga 1212
>ISArsp3
Length = 1596
Score = 38.2 bits (19), Expect = 3.9
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 92234 gtcggtctgcccgtcgatg 92252
|||||||||||||||||||
Sbjct: 856 gtcggtctgcccgtcgatg 838
>ISAau2
Length = 2222
Score = 38.2 bits (19), Expect = 3.9
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 66618 tcgacctcggcggtgaagg 66636
|||||||||||||||||||
Sbjct: 1328 tcgacctcggcggtgaagg 1346
>ISGbr1
Length = 1645
Score = 38.2 bits (19), Expect = 3.9
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 141285 ccgggccgtggacctcgat 141303
|||||||||||||||||||
Sbjct: 573 ccgggccgtggacctcgat 555
>ISMgi1
Length = 1614
Score = 38.2 bits (19), Expect = 3.9
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 149535 ggtcgatgagcacctggttgccc 149557
||||||||| |||||||||||||
Sbjct: 547 ggtcgatgatcacctggttgccc 525
>ISApr11
Length = 1667
Score = 38.2 bits (19), Expect = 3.9
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 89930 tctcgccctcgatccggtc 89948
|||||||||||||||||||
Sbjct: 369 tctcgccctcgatccggtc 387
>ISAar11
Length = 1737
Score = 38.2 bits (19), Expect = 3.9
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 112270 ggtgcggaccaggatcttc 112288
|||||||||||||||||||
Sbjct: 841 ggtgcggaccaggatcttc 823
>ISAzo2
Length = 1545
Score = 38.2 bits (19), Expect = 3.9
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 83401 gacgtcgtcgagcagctgg 83419
|||||||||||||||||||
Sbjct: 164 gacgtcgtcgagcagctgg 182
>ISAde5
Length = 1270
Score = 38.2 bits (19), Expect = 3.9
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 2860 ccgccagatcctcgccgtgacga 2882
||||||| |||||||||||||||
Sbjct: 638 ccgccagctcctcgccgtgacga 660
>ISMdi14
Length = 1316
Score = 38.2 bits (19), Expect = 3.9
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 167497 tcgcgctcgcgcgccggct 167515
|||||||||||||||||||
Sbjct: 1014 tcgcgctcgcgcgccggct 1032
>ISMex24
Length = 1677
Score = 38.2 bits (19), Expect = 3.9
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 6545 cggcagggcgcgggcgatcgcct 6567
|||||| ||||||||||||||||
Sbjct: 754 cggcagagcgcgggcgatcgcct 732
>ISSav5
Length = 1953
Score = 38.2 bits (19), Expect = 3.9
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 30575 gacgcgctgctcgtcgagg 30593
|||||||||||||||||||
Sbjct: 1569 gacgcgctgctcgtcgagg 1551
>ISCARN62
Length = 1398
Score = 38.2 bits (19), Expect = 3.9
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 89462 ggtcgacgaagaggccgcc 89480
|||||||||||||||||||
Sbjct: 615 ggtcgacgaagaggccgcc 597
>ISAzo14
Length = 1925
Score = 38.2 bits (19), Expect = 3.9
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 99279 cgagcgggcgctcgagcacctgc 99301
|||||||||||||||||| ||||
Sbjct: 1696 cgagcgggcgctcgagcaactgc 1718
>ISThsp9
Length = 6215
Score = 38.2 bits (19), Expect = 3.9
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 144887 tcctcgccgccatcggcgc 144905
|||||||||||||||||||
Sbjct: 5637 tcctcgccgccatcggcgc 5619
>ISThsp3
Length = 2455
Score = 38.2 bits (19), Expect = 3.9
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 4212 gcccggagggccacaccctgcgc 4234
||||| |||||||||||||||||
Sbjct: 1243 gcccgcagggccacaccctgcgc 1265
>ISAli20
Length = 3828
Score = 38.2 bits (19), Expect = 3.9
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 82885 cgcgacggccagctcgagg 82903
|||||||||||||||||||
Sbjct: 2395 cgcgacggccagctcgagg 2413
>ISGdi4
Length = 1176
Score = 38.2 bits (19), Expect = 3.9
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 101008 ctcgacgagatctcgcagg 101026
|||||||||||||||||||
Sbjct: 849 ctcgacgagatctcgcagg 867
>ISAli13
Length = 2756
Score = 38.2 bits (19), Expect = 3.9
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 109507 accgcggcttcctcgcccg 109525
|||||||||||||||||||
Sbjct: 1049 accgcggcttcctcgcccg 1067
>ISGob3
Length = 1597
Score = 38.2 bits (19), Expect = 3.9
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 138856 ggtgcggtcgtcacggcgc 138874
|||||||||||||||||||
Sbjct: 573 ggtgcggtcgtcacggcgc 555
Score = 38.2 bits (19), Expect = 3.9
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 138817 ggtgcggtcgtcacggcgc 138835
|||||||||||||||||||
Sbjct: 573 ggtgcggtcgtcacggcgc 555
>ISBvi1
Length = 1455
Score = 38.2 bits (19), Expect = 3.9
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 161835 ggcgcgaggccctcctggccgag 161857
||||||||||||| |||||||||
Sbjct: 1283 ggcgcgaggccctgctggccgag 1305
>ISFsp3
Length = 2209
Score = 38.2 bits (19), Expect = 3.9
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 7848 cgatccgctgcgcgagcaccggc 7870
||||||||||||||| |||||||
Sbjct: 316 cgatccgctgcgcgatcaccggc 294
>ISBcen7
Length = 1312
Score = 38.2 bits (19), Expect = 3.9
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 165742 ctggccgagcgggtcaacg 165760
|||||||||||||||||||
Sbjct: 1106 ctggccgagcgggtcaacg 1124
>ISAzo6
Length = 1925
Score = 38.2 bits (19), Expect = 3.9
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 99279 cgagcgggcgctcgagcacctgc 99301
|||||||||||||||||| ||||
Sbjct: 1696 cgagcgggcgctcgagcagctgc 1718
>ISLxx2
Length = 1427
Score = 38.2 bits (19), Expect = 3.9
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 167870 gtcccggtctcgtcgacga 167888
|||||||||||||||||||
Sbjct: 407 gtcccggtctcgtcgacga 389
>ISSsp126
Length = 1293
Score = 38.2 bits (19), Expect = 3.9
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 30648 tcctgggcgttggcctgga 30666
|||||||||||||||||||
Sbjct: 350 tcctgggcgttggcctgga 368
>IS66
Length = 2556
Score = 38.2 bits (19), Expect = 3.9
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 152757 ttctcgaagaggatcatcgccag 152779
|||||||| ||||||||||||||
Sbjct: 1507 ttctcgaacaggatcatcgccag 1485
>IS1648
Length = 969
Score = 38.2 bits (19), Expect = 3.9
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 45976 ccgcccgccgaggtcggcgtcgg 45998
||||||| |||||||||||||||
Sbjct: 333 ccgcccggcgaggtcggcgtcgg 311
>IS1601
Length = 1417
Score = 38.2 bits (19), Expect = 3.9
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 161773 caccgacctcgacgagcac 161791
|||||||||||||||||||
Sbjct: 548 caccgacctcgacgagcac 566
>IS298
Length = 845
Score = 38.2 bits (19), Expect = 3.9
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 150269 gcggtgtcggccatgacca 150287
|||||||||||||||||||
Sbjct: 588 gcggtgtcggccatgacca 570
>IS1415
Length = 2580
Score = 38.2 bits (19), Expect = 3.9
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 94596 gccgaaggtggaccgggcggcgg 94618
|||||||||||||| ||||||||
Sbjct: 1618 gccgaaggtggaccaggcggcgg 1596
>IS1122
Length = 1068
Score = 38.2 bits (19), Expect = 3.9
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 65665 cgggctcgtcctcgtcggc 65683
|||||||||||||||||||
Sbjct: 312 cgggctcgtcctcgtcggc 294
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_11_length_159158_cov_61.5731_ID_5190
(159,158 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISBdi2 | IS1380 | Bradyrhizobium diazoefficiens | 42 | 0.22 | |
| ISMfu2 | ISKra4 | ISKra4 | Myxococcus fulvus | 42 | 0.22 |
| ISHwa4 | IS701 | Haloquadratum walsbyi | 42 | 0.22 | |
| ISNha3 | IS1380 | Nitrobacter hamburgensis | 42 | 0.22 | |
| ISMex22 | Tn3 | Methylobacterium extorquens | 42 | 0.22 | |
| ISAli4 | IS3 | IS51 | Azospirillum lipoferum | 42 | 0.22 |
| ISFsp6 | IS4 | IS4 | Frankia sp. | 42 | 0.22 |
| ISBlo8 | IS256 | Bifidobacterium longum | 42 | 0.22 | |
| ISBj1 | IS1380 | - | Bradyrhizobium japonicum | 42 | 0.22 |
| ISNaoc4 | IS200/IS605 | IS1341 | Natronococcus occultus | 40 | 0.87 |
| ISGeob7 | IS5 | IS427 | Geodermatophilus obscurus | 40 | 0.87 |
| ISAau5 | ISNCY | Arthrobacter aurescens | 40 | 0.87 | |
| ISSav5 | IS481 | Streptomyces avermitilis | 40 | 0.87 | |
| ISSav7 | IS481 | Streptomyces avermitilis | 40 | 0.87 | |
| ISMca3 | IS3 | IS51 | Methylococcus capsulatus | 40 | 0.87 |
| IS1245 | IS256 | - | Mycobacterium avium | 40 | 0.87 |
| TnAs3 | Tn3 | Aeromonas salmonicida | 38 | 3.4 | |
| ISBj3 | IS3 | IS150 | Bradyrhizobium japonicum | 38 | 3.4 |
| ISHvo12 | IS4 | ISH8 | Haloferax volcanii | 38 | 3.4 |
| ISGpo1 | IS256 | Gordonia polyisoprenivorans | 38 | 3.4 | |
| ISRjo4 | IS256 | Rhodococcus jostii | 38 | 3.4 | |
| ISPa43 | Tn3 | Pseudomonas aeruginosa | 38 | 3.4 | |
| ISAzs23 | IS3 | IS3 | Azospirillum sp. | 38 | 3.4 |
| ISStsp9 | IS5 | IS427 | Streptomyces sp. | 38 | 3.4 |
| ISRel11 | IS5 | IS427 | Rhizobium etli | 38 | 3.4 |
| ISMtsp9 | IS110 | Methylobacterium sp. | 38 | 3.4 | |
| ISScl2 | ISAzo13 | Streptomyces clavuligerus | 38 | 3.4 | |
| ISPfr16 | IS30 | Propionibacterium freudenreichii | 38 | 3.4 | |
| ISArsp6 | Tn3 | Arthrobacter sp. | 38 | 3.4 | |
| ISRjo1 | IS1380 | Rhodococcus jostii | 38 | 3.4 | |
| ISAnsp10 | IS630 | Anaeromyxobacter sp. | 38 | 3.4 | |
| ISMex16 | IS3 | IS150 | Methylobacterium extorquens | 38 | 3.4 |
| ISMex39 | IS21 | Methylobacterium extorquens | 38 | 3.4 | |
| ISMdi6 | IS1182 | Methylobacterium dichloromethanicum | 38 | 3.4 | |
| ISThsp13 | IS1380 | Thiomonas sp. | 38 | 3.4 | |
| ISAzo30 | IS630 | Azoarcus sp. | 38 | 3.4 | |
| ISAzo20 | IS200/IS605 | IS200 | Azoarcus sp. | 38 | 3.4 |
| ISCARN29 | IS1595 | ISPna2 | Metagenomic data from CARNOULES | 38 | 3.4 |
| ISCARN27 | IS256 | Metagenomic data from CARNOULES | 38 | 3.4 | |
| ISGdi17 | IS21 | Gluconacetobacter diazotrophicus | 38 | 3.4 | |
| ISMno2 | IS66 | ISBst12 | Methylobacterium nodulans | 38 | 3.4 |
| ISMasp4 | IS66 | ISBst12 | Magnetococcus sp. | 38 | 3.4 |
| ISSce1 | IS1 | ISMhu11 | Sorangium cellulosum | 38 | 3.4 |
| ISMno1 | ISAs1 | Methylobacterium nodulans | 38 | 3.4 | |
| ISGur15 | IS21 | Geobacter uraniumreducens | 38 | 3.4 | |
| ISAav5 | IS481 | Acidovorax avenae | 38 | 3.4 | |
| ISAisp3 | IS481 | Acidovorax sp. | 38 | 3.4 | |
| ISGbe2 | IS3 | IS2 | Granulibacter bethesdensis | 38 | 3.4 |
| ISSisp1 | IS3 | IS407 | Silicibacter sp. | 38 | 3.4 |
| ISPst6 | IS110 | IS1111 | Pseudomonas stutzeri | 38 | 3.4 |
| ISSav4 | IS701 | Streptomyces avermitilis | 38 | 3.4 | |
| ISAzo7 | IS1595 | ISSod11 | Azoarcus sp. | 38 | 3.4 |
| ISGsu2 | IS5 | Geobacter sulfurreducens | 38 | 3.4 | |
| IS4811 | IS5 | IS1031 | Streptomyces lividans | 38 | 3.4 |
| IS110 | IS110 | - | Streptomyces coelicolor | 38 | 3.4 |
>ISBdi2
Length = 1622
Score = 42.1 bits (21), Expect = 0.22
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 73355 tgatcgagctcgtcggcgtcctcgt 73379
|||||||| ||||||||||||||||
Sbjct: 390 tgatcgaggtcgtcggcgtcctcgt 366
>ISMfu2
Length = 1554
Score = 42.1 bits (21), Expect = 0.22
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 101388 cgtcgccgtcctcaccgacgctgcc 101412
|||||||||||||||||||| ||||
Sbjct: 976 cgtcgccgtcctcaccgacggtgcc 1000
>ISHwa4
Length = 1285
Score = 42.1 bits (21), Expect = 0.22
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 136097 cctcgtcctcgtcgtcggcct 136117
|||||||||||||||||||||
Sbjct: 521 cctcgtcctcgtcgtcggcct 501
>ISNha3
Length = 1631
Score = 42.1 bits (21), Expect = 0.22
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 73355 tgatcgagctcgtcggcgtcctcgt 73379
|||||||| ||||||||||||||||
Sbjct: 391 tgatcgaggtcgtcggcgtcctcgt 367
>ISMex22
Length = 3864
Score = 42.1 bits (21), Expect = 0.22
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 74607 acctcactcggcgccacgtcg 74627
|||||||||||||||||||||
Sbjct: 447 acctcactcggcgccacgtcg 427
>ISAli4
Length = 1324
Score = 42.1 bits (21), Expect = 0.22
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 82015 cgccggcgcgttcgcgaagcgacgc 82039
||||||| |||||||||||||||||
Sbjct: 501 cgccggcccgttcgcgaagcgacgc 525
>ISFsp6
Length = 1472
Score = 42.1 bits (21), Expect = 0.22
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 56003 cccgagcacccggacctgcgg 56023
|||||||||||||||||||||
Sbjct: 572 cccgagcacccggacctgcgg 552
>ISBlo8
Length = 1408
Score = 42.1 bits (21), Expect = 0.22
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 93929 cgtggatctggagggcggccg 93949
|||||||||||||||||||||
Sbjct: 709 cgtggatctggagggcggccg 729
>ISBj1
Length = 2071
Score = 42.1 bits (21), Expect = 0.22
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 73355 tgatcgagctcgtcggcgtcctcgt 73379
|||||||| ||||||||||||||||
Sbjct: 732 tgatcgaggtcgtcggcgtcctcgt 708
>ISNaoc4
Length = 1568
Score = 40.1 bits (20), Expect = 0.87
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 124927 caccgcgacctgcccgacga 124946
||||||||||||||||||||
Sbjct: 736 caccgcgacctgcccgacga 755
>ISGeob7
Length = 883
Score = 40.1 bits (20), Expect = 0.87
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 63613 cgcggtcgacgactcgccctaccgcgccgacc 63644
||||||||||||| || || ||||||||||||
Sbjct: 609 cgcggtcgacgacgcggccgaccgcgccgacc 578
>ISAau5
Length = 3989
Score = 40.1 bits (20), Expect = 0.87
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 50447 cgggccgccgggcggagtgcctgg 50470
|||||||||||||||| |||||||
Sbjct: 787 cgggccgccgggcggattgcctgg 810
>ISSav5
Length = 1953
Score = 40.1 bits (20), Expect = 0.87
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 79690 gcagcgcgtcctcaaggcca 79709
||||||||||||||||||||
Sbjct: 1560 gcagcgcgtcctcaaggcca 1579
>ISSav7
Length = 2992
Score = 40.1 bits (20), Expect = 0.87
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 33135 aggcgcaggaccttgccgaccgcggcgt 33162
|||| |||||||| ||||||||||||||
Sbjct: 1112 aggcccaggacctcgccgaccgcggcgt 1139
>ISMca3
Length = 1320
Score = 40.1 bits (20), Expect = 0.87
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 26698 ggcctcgaggcgctcgcgttcgtc 26721
|||||||||||| |||||||||||
Sbjct: 274 ggcctcgaggcgttcgcgttcgtc 251
>IS1245
Length = 1414
Score = 40.1 bits (20), Expect = 0.87
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 27165 gccggtcccggaaggccgcg 27184
||||||||||||||||||||
Sbjct: 578 gccggtcccggaaggccgcg 559
>TnAs3
Length = 18735
Score = 38.2 bits (19), Expect = 3.4
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 99852 tcgtcggcttcgtcaacca 99870
|||||||||||||||||||
Sbjct: 14812 tcgtcggcttcgtcaacca 14830
>ISBj3
Length = 1284
Score = 38.2 bits (19), Expect = 3.4
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 120525 gacaacgtgttcgtcgagc 120543
|||||||||||||||||||
Sbjct: 1020 gacaacgtgttcgtcgagc 1038
>ISHvo12
Length = 1395
Score = 38.2 bits (19), Expect = 3.4
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 89462 cgagagcgagctcgaggaggtcg 89484
|||||||| ||||||||||||||
Sbjct: 387 cgagagcgtgctcgaggaggtcg 365
>ISGpo1
Length = 1432
Score = 38.2 bits (19), Expect = 3.4
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 113367 cactgggcggtcagccggg 113385
|||||||||||||||||||
Sbjct: 591 cactgggcggtcagccggg 573
>ISRjo4
Length = 1458
Score = 38.2 bits (19), Expect = 3.4
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 123784 gccgtcaccgaccgccaga 123802
|||||||||||||||||||
Sbjct: 852 gccgtcaccgaccgccaga 834
>ISPa43
Length = 19903
Score = 38.2 bits (19), Expect = 3.4
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 132065 tcgacctgcgcggtcgcac 132083
|||||||||||||||||||
Sbjct: 12182 tcgacctgcgcggtcgcac 12200
>ISAzs23
Length = 1596
Score = 38.2 bits (19), Expect = 3.4
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 93421 cgccgcggtgagcgcgatcgcca 93443
||||||| |||||||||||||||
Sbjct: 545 cgccgcgatgagcgcgatcgcca 567
>ISStsp9
Length = 956
Score = 38.2 bits (19), Expect = 3.4
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 17658 gagagcctgcggctgctcg 17676
|||||||||||||||||||
Sbjct: 331 gagagcctgcggctgctcg 349
>ISRel11
Length = 862
Score = 38.2 bits (19), Expect = 3.4
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 106186 gtgctcgccgaccgcgcct 106204
|||||||||||||||||||
Sbjct: 583 gtgctcgccgaccgcgcct 601
>ISMtsp9
Length = 1456
Score = 38.2 bits (19), Expect = 3.4
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 104594 ctggggctccgctcgcgcg 104612
|||||||||||||||||||
Sbjct: 155 ctggggctccgctcgcgcg 173
>ISScl2
Length = 1819
Score = 38.2 bits (19), Expect = 3.4
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 98431 gatcgaccgggcctcggcc 98449
|||||||||||||||||||
Sbjct: 197 gatcgaccgggcctcggcc 179
>ISPfr16
Length = 1234
Score = 38.2 bits (19), Expect = 3.4
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 47749 ccaaggacgccgcgttctccatc 47771
||||| |||||||||||||||||
Sbjct: 971 ccaagcacgccgcgttctccatc 993
>ISArsp6
Length = 26712
Score = 38.2 bits (19), Expect = 3.4
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 31024 ggcggccagcccgtcccgg 31042
|||||||||||||||||||
Sbjct: 23454 ggcggccagcccgtcccgg 23436
Score = 38.2 bits (19), Expect = 3.4
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 111432 ggtgggccgggtgacgccg 111450
|||||||||||||||||||
Sbjct: 23610 ggtgggccgggtgacgccg 23592
>ISRjo1
Length = 1967
Score = 38.2 bits (19), Expect = 3.4
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 75352 acggccacggcgaacagggctcc 75374
||||||||||| |||||||||||
Sbjct: 715 acggccacggcaaacagggctcc 737
Score = 38.2 bits (19), Expect = 3.4
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 133066 gtcaacgcctacgccgccgagca 133088
||||||||||||||||| |||||
Sbjct: 820 gtcaacgcctacgccgcggagca 842
>ISAnsp10
Length = 1185
Score = 38.2 bits (19), Expect = 3.4
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 7871 gccatcgtcgagtacatcg 7889
|||||||||||||||||||
Sbjct: 1023 gccatcgtcgagtacatcg 1041
>ISMex16
Length = 1511
Score = 38.2 bits (19), Expect = 3.4
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 154728 agccgcacccagcgccagg 154746
|||||||||||||||||||
Sbjct: 1035 agccgcacccagcgccagg 1017
>ISMex39
Length = 2456
Score = 38.2 bits (19), Expect = 3.4
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 21841 gatctacgaggcgctgcgc 21859
|||||||||||||||||||
Sbjct: 342 gatctacgaggcgctgcgc 360
>ISMdi6
Length = 1466
Score = 38.2 bits (19), Expect = 3.4
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 118364 ccgacggccggccgcgtcc 118382
|||||||||||||||||||
Sbjct: 1160 ccgacggccggccgcgtcc 1142
>ISThsp13
Length = 1583
Score = 38.2 bits (19), Expect = 3.4
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 124086 actgctctgccagggcccgctca 124108
||||||| |||||||||||||||
Sbjct: 914 actgctcggccagggcccgctca 892
>ISAzo30
Length = 1100
Score = 38.2 bits (19), Expect = 3.4
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 47475 ggcaccgcgaccaccggtg 47493
|||||||||||||||||||
Sbjct: 663 ggcaccgcgaccaccggtg 645
>ISAzo20
Length = 624
Score = 38.2 bits (19), Expect = 3.4
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 129443 ccgccgaaccgtcgcgcga 129461
|||||||||||||||||||
Sbjct: 390 ccgccgaaccgtcgcgcga 372
>ISCARN29
Length = 1044
Score = 38.2 bits (19), Expect = 3.4
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 148691 gtcctcggcctggccggcg 148709
|||||||||||||||||||
Sbjct: 701 gtcctcggcctggccggcg 683
>ISCARN27
Length = 1356
Score = 38.2 bits (19), Expect = 3.4
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 152769 acgacgggctgaagaaggc 152787
|||||||||||||||||||
Sbjct: 798 acgacgggctgaagaaggc 816
>ISGdi17
Length = 2482
Score = 38.2 bits (19), Expect = 3.4
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 124640 gccggttcctgggccacca 124658
|||||||||||||||||||
Sbjct: 1967 gccggttcctgggccacca 1949
>ISMno2
Length = 1419
Score = 38.2 bits (19), Expect = 3.4
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 113419 ggcggccaggtcggtgacg 113437
|||||||||||||||||||
Sbjct: 1055 ggcggccaggtcggtgacg 1037
>ISMasp4
Length = 1969
Score = 38.2 bits (19), Expect = 3.4
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 117021 ccaggctgatccggggcac 117039
|||||||||||||||||||
Sbjct: 895 ccaggctgatccggggcac 877
>ISSce1
Length = 4601
Score = 38.2 bits (19), Expect = 3.4
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 144629 cccggagatcgtcgacgccgccctggc 144655
||||||| ||||||| |||||||||||
Sbjct: 1032 cccggagctcgtcgaggccgccctggc 1058
>ISMno1
Length = 1218
Score = 38.2 bits (19), Expect = 3.4
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 24910 cgaggtggtggcggtggat 24928
|||||||||||||||||||
Sbjct: 390 cgaggtggtggcggtggat 408
>ISGur15
Length = 2390
Score = 38.2 bits (19), Expect = 3.4
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 112146 cggtggcaccggtaccggc 112164
|||||||||||||||||||
Sbjct: 1920 cggtggcaccggtaccggc 1938
>ISAav5
Length = 1023
Score = 38.2 bits (19), Expect = 3.4
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 129585 gtcggccaggacctgggcg 129603
|||||||||||||||||||
Sbjct: 644 gtcggccaggacctgggcg 626
>ISAisp3
Length = 1023
Score = 38.2 bits (19), Expect = 3.4
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 129585 gtcggccaggacctgggcg 129603
|||||||||||||||||||
Sbjct: 644 gtcggccaggacctgggcg 626
>ISGbe2
Length = 1352
Score = 38.2 bits (19), Expect = 3.4
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 36234 cgaccgtcgagagtctcctcgac 36256
||||||||||| |||||||||||
Sbjct: 210 cgaccgtcgagcgtctcctcgac 188
>ISSisp1
Length = 1236
Score = 38.2 bits (19), Expect = 3.4
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 76622 gagcgcgagatccgcgacg 76640
|||||||||||||||||||
Sbjct: 306 gagcgcgagatccgcgacg 288
>ISPst6
Length = 1371
Score = 38.2 bits (19), Expect = 3.4
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 114415 ggctcgatgccggggcatt 114433
|||||||||||||||||||
Sbjct: 158 ggctcgatgccggggcatt 176
>ISSav4
Length = 1426
Score = 38.2 bits (19), Expect = 3.4
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 157506 ggacatcttcgacgagctg 157524
|||||||||||||||||||
Sbjct: 589 ggacatcttcgacgagctg 607
>ISAzo7
Length = 1044
Score = 38.2 bits (19), Expect = 3.4
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 109912 gtgcagcccgaccacctggacttctac 109938
|||||||||||||| || |||||||||
Sbjct: 853 gtgcagcccgaccagctcgacttctac 879
>ISGsu2
Length = 1319
Score = 38.2 bits (19), Expect = 3.4
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 144117 cccggctctaccgcaaggcgaag 144139
|||||||||||||||||| ||||
Sbjct: 674 cccggctctaccgcaaggggaag 696
>IS4811
Length = 5396
Score = 38.2 bits (19), Expect = 3.4
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 112668 cctggtccaggaggcggcc 112686
|||||||||||||||||||
Sbjct: 4046 cctggtccaggaggcggcc 4028
>IS110
Length = 1558
Score = 38.2 bits (19), Expect = 3.4
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 48768 gccgcccgcgagctgtccg 48786
|||||||||||||||||||
Sbjct: 191 gccgcccgcgagctgtccg 173
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_12_length_118716_cov_92.925_ID_5192
(118,716 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISStro1 | IS5 | IS427 | Streptosporangium roseum | 42 | 0.16 |
| ISMet1 | ISKra4 | ISAzba1 | Methylocystis sp. | 40 | 0.65 |
| ISTni2 | IS481 | Thioalkalivibrio nitratireducens | 40 | 0.65 | |
| ISNph12 | IS200/IS605 | IS1341 | Natronomonas pharaonis | 40 | 0.65 |
| ISArsp6 | Tn3 | Arthrobacter sp. | 40 | 0.65 | |
| ISRjo1 | IS1380 | Rhodococcus jostii | 40 | 0.65 | |
| ISMdi6 | IS1182 | Methylobacterium dichloromethanicum | 40 | 0.65 | |
| ISMex36 | IS1182 | Methylobacterium extorquens | 40 | 0.65 | |
| ISThsp10 | IS21 | Thiomonas sp. | 40 | 0.65 | |
| ISLxc1 | IS21 | Leifsonia xyli | 40 | 0.65 | |
| ISEc22 | IS66 | Escherichia coli | 40 | 0.65 | |
| ISRm13 | IS5 | IS5 | Sinorhizobium meliloti | 40 | 0.65 |
| ISPsy34 | IS66 | Pseudomonas syringae | 38 | 2.6 | |
| ISHasp1 | IS200/IS605 | IS1341 | Halobacterium sp. | 38 | 2.6 |
| ISBlo16 | IS256 | IS1249 | Bifidobacterium longum | 38 | 2.6 |
| ISAzs29 | Tn3 | Azospirillum sp. | 38 | 2.6 | |
| ISNph8 | IS200/IS605 | IS1341 | Natronomonas pharaonis | 38 | 2.6 |
| ISGeob2 | IS5 | ISL2 | Geodermatophilus obscurus | 38 | 2.6 |
| ISPpa7 | IS66 | Paracoccus pantotrophus | 38 | 2.6 | |
| ISHwa6 | IS1595 | ISH4 | Haloquadratum walsbyi | 38 | 2.6 |
| ISMpo10 | Tn3 | Methylobacterium populi | 38 | 2.6 | |
| ISMno33 | IS1182 | Methylobacterium nodulans | 38 | 2.6 | |
| ISMra3 | IS256 | Methylobacterium radiotolerans | 38 | 2.6 | |
| ISPfr3 | ISL3 | Propionibacterium freudenreichii | 38 | 2.6 | |
| ISMch8 | IS5 | IS5 | Methylobacterium chloromethanicum | 38 | 2.6 |
| ISRop1 | IS1380 | Rhodococcus opacus | 38 | 2.6 | |
| ISStsp3 | IS1380 | Streptomyces sp. | 38 | 2.6 | |
| ISAcr5 | IS1380 | Acidiphilium cryptum | 38 | 2.6 | |
| ISAcr4 | IS1380 | Acidiphilium cryptum | 38 | 2.6 | |
| ISPosp7 | IS1380 | Polaromonas sp. | 38 | 2.6 | |
| ISRme16 | IS5 | Ralstonia eutropha | 38 | 2.6 | |
| ISAar4 | IS3 | IS3 | Arthrobacter arilaitensis | 38 | 2.6 |
| ISAnsp9 | ISAs1 | Anaeromyxobacter sp. | 38 | 2.6 | |
| ISMex22 | Tn3 | Methylobacterium extorquens | 38 | 2.6 | |
| ISThsp9 | Tn3 | Thiomonas sp. | 38 | 2.6 | |
| ISThsp5 | IS21 | Thiomonas sp. | 38 | 2.6 | |
| ISSav7 | IS481 | Streptomyces avermitilis | 38 | 2.6 | |
| ISCARN22 | IS66 | Metagenomic data from CARNOULES | 38 | 2.6 | |
| ISCARN21 | IS630 | Metagenomic data from CARNOULES | 38 | 2.6 | |
| ISThsp3 | IS66 | Thiomonas sp. | 38 | 2.6 | |
| ISApr6 | IS66 | Alpha proteobacterium | 38 | 2.6 | |
| ISSgr1 | IS110 | IS1111 | Streptomyces griseus | 38 | 2.6 |
| ISSme1 | IS3 | IS407 | Sinorhizobium medicae | 38 | 2.6 |
| ISBcen18 | IS256 | Burkholderia cenocepacia | 38 | 2.6 | |
| ISTfu1 | IS200/IS605 | Thermobifida fusca | 38 | 2.6 | |
| ISAzo6 | IS1634 | Azoarcus sp. | 38 | 2.6 | |
| ISXc4 | Tn3 | - | Xanthomonas campestris | 38 | 2.6 |
| ISRme1 | IS5 | - | Ralstonia metallidurans | 38 | 2.6 |
| ISPa42 | Tn3 | Pseudomonas aeruginosa | 38 | 2.6 | |
| ISH8E | IS4 | ISH8 | Halobacterium sp. | 38 | 2.6 |
| ISH5 | IS4 | ISH8 | Halobacterium sp. | 38 | 2.6 |
| IS112 | IS5 | ISL2 | Streptomyces albus | 38 | 2.6 |
>ISStro1
Length = 973
Score = 42.1 bits (21), Expect = 0.16
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 78791 gacgatgccgagcgggacgtcggtg 78815
||||||||||||||||||| |||||
Sbjct: 553 gacgatgccgagcgggacgccggtg 529
>ISMet1
Length = 1557
Score = 40.1 bits (20), Expect = 0.65
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 73457 cggcgcccaggtcgccctgctcgc 73480
|||||||||||||||| |||||||
Sbjct: 1207 cggcgcccaggtcgccttgctcgc 1184
>ISTni2
Length = 3451
Score = 40.1 bits (20), Expect = 0.65
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 68608 ggtcgcggccctggccgacg 68627
||||||||||||||||||||
Sbjct: 1853 ggtcgcggccctggccgacg 1872
Score = 38.2 bits (19), Expect = 2.6
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 27641 atcccgggccaggggcagg 27659
|||||||||||||||||||
Sbjct: 620 atcccgggccaggggcagg 638
>ISNph12
Length = 1424
Score = 40.1 bits (20), Expect = 0.65
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 20297 gtcggaatcgacctcggcaccaccaact 20324
||||| ||||||||||||| ||||||||
Sbjct: 689 gtcggcatcgacctcggcatcaccaact 716
>ISArsp6
Length = 26712
Score = 40.1 bits (20), Expect = 0.65
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 26468 gtgcggtccggatgagccgg 26487
||||||||||||||||||||
Sbjct: 24637 gtgcggtccggatgagccgg 24618
>ISRjo1
Length = 1967
Score = 40.1 bits (20), Expect = 0.65
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 87339 caggtccacgtgcgcctgctcgatgacg 87366
||||||| ||||| ||||||||||||||
Sbjct: 1403 caggtccgcgtgcacctgctcgatgacg 1376
>ISMdi6
Length = 1466
Score = 40.1 bits (20), Expect = 0.65
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 111327 tcgcccgggcctgcgaggag 111346
||||||||||||||||||||
Sbjct: 301 tcgcccgggcctgcgaggag 320
>ISMex36
Length = 1467
Score = 40.1 bits (20), Expect = 0.65
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 111327 tcgcccgggcctgcgaggag 111346
||||||||||||||||||||
Sbjct: 301 tcgcccgggcctgcgaggag 320
>ISThsp10
Length = 2501
Score = 40.1 bits (20), Expect = 0.65
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 86649 ggtcttgccggtgccgggcccgcc 86672
||||||||| ||||||||||||||
Sbjct: 1972 ggtcttgccagtgccgggcccgcc 1949
>ISLxc1
Length = 3533
Score = 40.1 bits (20), Expect = 0.65
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 45725 cgaggtcgtcgtcttcgacg 45744
||||||||||||||||||||
Sbjct: 2119 cgaggtcgtcgtcttcgacg 2138
>ISEc22
Length = 2454
Score = 40.1 bits (20), Expect = 0.65
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 102253 tcggcaaggcgctgctccgc 102272
||||||||||||||||||||
Sbjct: 2011 tcggcaaggcgctgctccgc 1992
>ISRm13
Length = 1550
Score = 40.1 bits (20), Expect = 0.65
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 48412 gtgcggctggcgcgggcgatcgagtggc 48439
||||||||||||| ||||||||| ||||
Sbjct: 270 gtgcggctggcgcaggcgatcgactggc 297
>ISPsy34
Length = 2041
Score = 38.2 bits (19), Expect = 2.6
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 35376 catggaactgctcgccaga 35394
|||||||||||||||||||
Sbjct: 1965 catggaactgctcgccaga 1983
>ISHasp1
Length = 1601
Score = 38.2 bits (19), Expect = 2.6
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 43774 cgttcgtctccaccgacca 43792
|||||||||||||||||||
Sbjct: 1189 cgttcgtctccaccgacca 1171
>ISBlo16
Length = 1323
Score = 38.2 bits (19), Expect = 2.6
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 75087 ggacgtgctcatcaccgac 75105
|||||||||||||||||||
Sbjct: 569 ggacgtgctcatcaccgac 587
>ISAzs29
Length = 3897
Score = 38.2 bits (19), Expect = 2.6
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 30272 ggcgtggcgttccgccagc 30290
|||||||||||||||||||
Sbjct: 1397 ggcgtggcgttccgccagc 1379
>ISNph8
Length = 1431
Score = 38.2 bits (19), Expect = 2.6
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 20905 cggtgacgactgggacgag 20923
|||||||||||||||||||
Sbjct: 247 cggtgacgactgggacgag 265
>ISGeob2
Length = 968
Score = 38.2 bits (19), Expect = 2.6
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 117463 cggcgaggtcgtgcatcga 117481
|||||||||||||||||||
Sbjct: 645 cggcgaggtcgtgcatcga 627
>ISPpa7
Length = 2731
Score = 38.2 bits (19), Expect = 2.6
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 96144 ggctcgccgccctggccgaccgg 96166
|||||||||||| ||||||||||
Sbjct: 2234 ggctcgccgcccaggccgaccgg 2256
>ISHwa6
Length = 1002
Score = 38.2 bits (19), Expect = 2.6
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 44666 accggtcgagatcgacgag 44684
|||||||||||||||||||
Sbjct: 458 accggtcgagatcgacgag 476
>ISMpo10
Length = 4911
Score = 38.2 bits (19), Expect = 2.6
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 41269 ggcggatcagcttgcgggc 41287
|||||||||||||||||||
Sbjct: 3016 ggcggatcagcttgcgggc 2998
>ISMno33
Length = 1767
Score = 38.2 bits (19), Expect = 2.6
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 44977 agctcgccgccgcccaggagcgc 44999
|||||||||||||||| ||||||
Sbjct: 1162 agctcgccgccgcccacgagcgc 1184
>ISMra3
Length = 1398
Score = 38.2 bits (19), Expect = 2.6
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 36674 gtcaggccggcagcggcgcgggg 36696
||||||| |||||||||||||||
Sbjct: 328 gtcaggcaggcagcggcgcgggg 350
>ISPfr3
Length = 1457
Score = 38.2 bits (19), Expect = 2.6
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 54675 ccaccgcagagcgcgccga 54693
|||||||||||||||||||
Sbjct: 482 ccaccgcagagcgcgccga 464
>ISMch8
Length = 1494
Score = 38.2 bits (19), Expect = 2.6
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 89467 gagctgcccggctacgcgcacgtctac 89493
|||||||||||||||||| ||| ||||
Sbjct: 1202 gagctgcccggctacgcggacgactac 1228
>ISRop1
Length = 4160
Score = 38.2 bits (19), Expect = 2.6
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 48617 tggcggggatcgccgccttcacc 48639
|||||| ||||||||||||||||
Sbjct: 3404 tggcggcgatcgccgccttcacc 3382
>ISStsp3
Length = 1925
Score = 38.2 bits (19), Expect = 2.6
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 87464 tcaacggggcgccggggtggggc 87486
||||| |||||||||||||||||
Sbjct: 1120 tcaactgggcgccggggtggggc 1098
>ISAcr5
Length = 1618
Score = 38.2 bits (19), Expect = 2.6
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 109861 ggcgctggcccgcgagcac 109879
|||||||||||||||||||
Sbjct: 1201 ggcgctggcccgcgagcac 1183
>ISAcr4
Length = 1618
Score = 38.2 bits (19), Expect = 2.6
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 109861 ggcgctggcccgcgagcac 109879
|||||||||||||||||||
Sbjct: 1200 ggcgctggcccgcgagcac 1182
>ISPosp7
Length = 1612
Score = 38.2 bits (19), Expect = 2.6
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 37579 cgccggggtgggggcaggt 37597
|||||||||||||||||||
Sbjct: 1468 cgccggggtgggggcaggt 1486
>ISRme16
Length = 1331
Score = 38.2 bits (19), Expect = 2.6
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 93926 ctcgcgctcggcgtgtccg 93944
|||||||||||||||||||
Sbjct: 798 ctcgcgctcggcgtgtccg 780
>ISAar4
Length = 1304
Score = 38.2 bits (19), Expect = 2.6
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 45951 ctcagcggcgaggtccgcg 45969
|||||||||||||||||||
Sbjct: 605 ctcagcggcgaggtccgcg 587
>ISAnsp9
Length = 1704
Score = 38.2 bits (19), Expect = 2.6
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 22820 accggctcgtgcgggccgc 22838
|||||||||||||||||||
Sbjct: 534 accggctcgtgcgggccgc 552
>ISMex22
Length = 3864
Score = 38.2 bits (19), Expect = 2.6
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 16706 cggcctcgtcgaccgtctcgaag 16728
||||||||||||||| |||||||
Sbjct: 1521 cggcctcgtcgaccgcctcgaag 1543
>ISThsp9
Length = 6215
Score = 38.2 bits (19), Expect = 2.6
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 92707 cgcctcgacgctggccgag 92725
|||||||||||||||||||
Sbjct: 2823 cgcctcgacgctggccgag 2841
Score = 38.2 bits (19), Expect = 2.6
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 44350 tcgcccgtggcgagctgcg 44368
|||||||||||||||||||
Sbjct: 4766 tcgcccgtggcgagctgcg 4784
>ISThsp5
Length = 2652
Score = 38.2 bits (19), Expect = 2.6
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 86650 gtcttgccggtgccgggcccgcc 86672
|||||||||||||| ||||||||
Sbjct: 1960 gtcttgccggtgccaggcccgcc 1938
>ISSav7
Length = 2992
Score = 38.2 bits (19), Expect = 2.6
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 108826 gccggtgtggcgggcggac 108844
|||||||||||||||||||
Sbjct: 1473 gccggtgtggcgggcggac 1455
>ISCARN22
Length = 2674
Score = 38.2 bits (19), Expect = 2.6
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 32996 gcgcagcccctcggtgagc 33014
|||||||||||||||||||
Sbjct: 860 gcgcagcccctcggtgagc 842
>ISCARN21
Length = 1249
Score = 38.2 bits (19), Expect = 2.6
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 49728 cctggcggcgctggacctg 49746
|||||||||||||||||||
Sbjct: 819 cctggcggcgctggacctg 837
>ISThsp3
Length = 2455
Score = 38.2 bits (19), Expect = 2.6
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 59597 acggcggctcggcggccgg 59615
|||||||||||||||||||
Sbjct: 2254 acggcggctcggcggccgg 2236
>ISApr6
Length = 2479
Score = 38.2 bits (19), Expect = 2.6
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 114619 cggccacgcggcgcgcgag 114637
|||||||||||||||||||
Sbjct: 1587 cggccacgcggcgcgcgag 1605
>ISSgr1
Length = 1544
Score = 38.2 bits (19), Expect = 2.6
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 56003 cgtcgcccgcgacgccggc 56021
|||||||||||||||||||
Sbjct: 489 cgtcgcccgcgacgccggc 507
>ISSme1
Length = 1271
Score = 38.2 bits (19), Expect = 2.6
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 116760 gctgctcgccgagcagatg 116778
|||||||||||||||||||
Sbjct: 267 gctgctcgccgagcagatg 285
>ISBcen18
Length = 1372
Score = 38.2 bits (19), Expect = 2.6
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 82873 ccgacgaggtgatcgccgaggcg 82895
||||||||||||| |||||||||
Sbjct: 537 ccgacgaggtgatggccgaggcg 559
>ISTfu1
Length = 1743
Score = 38.2 bits (19), Expect = 2.6
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 89993 ggctgacccgggcgatcctggcc 90015
|||||| ||||||||||||||||
Sbjct: 1372 ggctgaaccgggcgatcctggcc 1394
>ISAzo6
Length = 1925
Score = 38.2 bits (19), Expect = 2.6
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 107248 cgccgtcatcgagcgaggcttcaaggt 107274
||||| ||||||||| |||||||||||
Sbjct: 1525 cgccgacatcgagcgcggcttcaaggt 1551
>ISXc4
Length = 6938
Score = 38.2 bits (19), Expect = 2.6
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 92707 cgcctcgacgctggccgag 92725
|||||||||||||||||||
Sbjct: 2828 cgcctcgacgctggccgag 2846
>ISRme1
Length = 1331
Score = 38.2 bits (19), Expect = 2.6
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 93926 ctcgcgctcggcgtgtccg 93944
|||||||||||||||||||
Sbjct: 798 ctcgcgctcggcgtgtccg 780
>ISPa42
Length = 16941
Score = 38.2 bits (19), Expect = 2.6
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 79514 gccgcgccaatgcccacgg 79532
|||||||||||||||||||
Sbjct: 7241 gccgcgccaatgcccacgg 7223
>ISH8E
Length = 1403
Score = 38.2 bits (19), Expect = 2.6
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 88539 accacgctcgacgaggtcg 88557
|||||||||||||||||||
Sbjct: 382 accacgctcgacgaggtcg 364
>ISH5
Length = 1442
Score = 38.2 bits (19), Expect = 2.6
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 44624 cgacgaggcggcgtcgcggctcc 44646
||||||| |||||||||||||||
Sbjct: 1216 cgacgagtcggcgtcgcggctcc 1238
>IS112
Length = 883
Score = 38.2 bits (19), Expect = 2.6
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 10043 cctcgggctcagcccgctg 10061
|||||||||||||||||||
Sbjct: 110 cctcgggctcagcccgctg 92
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_13_length_97174_cov_90.0465_ID_5194
(97,174 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISThsp11 | IS3 | IS3 | Thiomonas sp. | 48 | 0.002 |
| ISFsp3 | IS21 | Frankia sp. | 44 | 0.034 | |
| ISGau4 | IS3 | IS407 | Gemmatimonas aurantiaca | 42 | 0.13 |
| ISStu1 | IS5 | ISL2 | Streptomyces turgidiscabies | 42 | 0.13 |
| ISRjo3 | ISNCY | ISDol1 | Rhodococcus jostii | 42 | 0.13 |
| ISBad1 | IS21 | Bifidobacterium adolescentis | 42 | 0.13 | |
| ISMav1 | IS21 | - | Mycobacterium avium | 42 | 0.13 |
| IS1612 | IS21 | - | Mycobacterium avium | 42 | 0.13 |
| ISAzs17 | Tn3 | Azospirillum sp. | 40 | 0.53 | |
| ISNmo4 | IS5 | IS5 | Nitrococcus mobilis | 40 | 0.53 |
| ISMno38 | IS1182 | Methylobacterium nodulans | 40 | 0.53 | |
| ISNosp1 | IS1380 | Nocardioides sp. | 40 | 0.53 | |
| ISAde1 | IS66 | Anaeromyxobacter dehalogenans | 40 | 0.53 | |
| ISMdi11 | IS481 | Methylobacterium dichloromethanicum | 40 | 0.53 | |
| ISCARN32 | IS110 | IS1111 | Metagenomic data from CARNOULES | 40 | 0.53 |
| ISRhsp2 | IS3 | IS2 | Rhodobacter sphaeroides | 40 | 0.53 |
| ISBlo1 | IS21 | Bifidobacterium longum | 40 | 0.53 | |
| ISXc4 | Tn3 | - | Xanthomonas campestris | 40 | 0.53 |
| ISSco3 | IS5 | IS1031 | Streptomyces coelicolor | 40 | 0.53 |
| IS468A | IS5 | IS1031 | Streptomyces coelicolor | 40 | 0.53 |
| ISAeme12 | IS4 | IS4 | Aeromonas media | 38 | 2.1 |
| ISHamu1 | IS200/IS605 | IS1341 | Haloferax mucosum | 38 | 2.1 |
| ISHaru1 | IS200/IS605 | IS1341 | Halobellus rufus | 38 | 2.1 |
| ISHru2 | IS200/IS605 | IS605 | Halovivax ruber | 38 | 2.1 |
| ISHmu6 | IS200/IS605 | Halomicrobium mukohataei | 38 | 2.1 | |
| ISTni1 | ISKra4 | ISKra4 | Thioalkalivibrio nitratireducens | 38 | 2.1 |
| ISSiac4 | ISKra4 | ISKra4 | Singulisphaera acidiphila | 38 | 2.1 |
| ISPa36 | IS21 | Pseudomonas aeruginosa | 38 | 2.1 | |
| ISStsp6 | IS5 | ISL2 | Streptomyces sp | 38 | 2.1 |
| ISPfr6 | ISL3 | Propionibacterium freudenreichii | 38 | 2.1 | |
| ISMch7 | IS701 | Methylobacterium chloromethanicum | 38 | 2.1 | |
| ISMpo3 | IS1380 | Methylobacterium populi | 38 | 2.1 | |
| ISAar6 | IS256 | Arthrobacter arilaitensis | 38 | 2.1 | |
| ISMdi27 | IS21 | Methylobacterium dichloromethanicum | 38 | 2.1 | |
| ISMex28 | IS5 | IS5 | Methylobacterium extorquens | 38 | 2.1 |
| ISMex39 | IS21 | Methylobacterium extorquens | 38 | 2.1 | |
| ISAzo21 | IS66 | Azoarcus sp. | 38 | 2.1 | |
| ISAzo19 | IS66 | Azoarcus sp. | 38 | 2.1 | |
| ISAli20 | Tn3 | Azospirillum lipoferum | 38 | 2.1 | |
| ISGdi8 | IS256 | Gluconacetobacter diazotrophicus | 38 | 2.1 | |
| ISLxx6 | IS5 | IS427 | Leifsonia xyli | 38 | 2.1 |
| ISButh2 | IS3 | IS2 | Burkholderia thailandensis | 38 | 2.1 |
| ISvEsV1_1 | IS4 | IS4 | Ectocarpus siliculosus | 38 | 2.1 |
| ISRle2 | IS30 | Rhizobium leguminosarum | 38 | 2.1 | |
| ISMyma3 | IS3 | IS51 | Mycobacterium marinum | 38 | 2.1 |
| ISHma12 | IS200/IS605 | Haloarcula marismortui | 38 | 2.1 | |
| ISBcen6 | IS3 | IS2 | Burkholderia cenocepacia | 38 | 2.1 |
| ISScl1 | IS5 | IS1031 | Streptomyces clavuligerus | 38 | 2.1 |
| ISAzvi4 | IS110 | IS1111 | Azotobacter vinelandii | 38 | 2.1 |
| ISGsu2 | IS5 | Geobacter sulfurreducens | 38 | 2.1 | |
| ISH7B | ISNCY | Halobacterium sp. | 38 | 2.1 | |
| ISH7A | ISNCY | Halobacterium sp. | 38 | 2.1 | |
| ISBugl1 | IS3 | IS2 | Burkholderia glumae | 38 | 2.1 |
| IS1601 | IS256 | - | Mycobacterium avium | 38 | 2.1 |
| IS1417 | IS3 | IS2 | Burkholderia glumae | 38 | 2.1 |
| ISMyin1 | ISNCY | ISDol1 | Mycobacterium indicus | 36 | 8.3 |
| ISAeme13 | IS4 | IS4 | Aeromonas media | 36 | 8.3 |
| ISNaoc4 | IS200/IS605 | IS1341 | Natronococcus occultus | 36 | 8.3 |
| ISHme3 | IS200/IS605 | IS1341 | Haloferax mediterranei | 36 | 8.3 |
| ISHall1 | IS200/IS605 | IS605 | Halostagnicola larsenii | 36 | 8.3 |
| ISHla16 | IS200/IS605 | Halorubrum lacusprofundi | 36 | 8.3 | |
| ISPko3 | IS5 | IS903 | Paracoccus kondratievae | 36 | 8.3 |
| ISHmu5 | IS200/IS605 | Halomicrobium mukohataei | 36 | 8.3 | |
| ISFsp17 | ISKra4 | ISKra4 | Frankia sp. | 36 | 8.3 |
| ISHoc2 | ISKra4 | ISKra4 | Haliangium ochraceum | 36 | 8.3 |
| ISEnfa5 | IS3 | IS150 | Enterococcus faecalis | 36 | 8.3 |
| ISHla9 | ISH3 | Halorubrum lacusprofundi | 36 | 8.3 | |
| ISHla8 | ISH3 | Halorubrum lacusprofundi | 36 | 8.3 | |
| ISApr14 | IS256 | alpha proteobacterium | 36 | 8.3 | |
| ISPa38 | Tn3 | Pseudomonas aeruginosa | 36 | 8.3 | |
| ISPsy30 | Tn3 | Pseudomonas syringae | 36 | 8.3 | |
| ISUnCu14 | IS66 | Uncultured bacterium | 36 | 8.3 | |
| ISSgr2 | IS5 | ISL2 | Streptomyces griseus | 36 | 8.3 |
| ISMgi3 | IS1182 | Mycobacterium gilvum | 36 | 8.3 | |
| ISPmar3 | IS5 | IS5 | Paracoccus marcusii | 36 | 8.3 |
| ISPkr1 | IS21 | Paracoccus koreensis | 36 | 8.3 | |
| ISHwa12 | ISH3 | Haloquadratum walsbyi | 36 | 8.3 | |
| ISMamg2 | IS3 | IS407 | Magnetospirillum magneticum | 36 | 8.3 |
| ISMtsp8 | IS21 | Methylobacterium sp. | 36 | 8.3 | |
| ISArsp6 | Tn3 | Arthrobacter sp. | 36 | 8.3 | |
| ISArsp5 | IS110 | Arthrobacter sp. | 36 | 8.3 | |
| ISAau2 | IS21 | Arthrobacter aurescens | 36 | 8.3 | |
| ISHwa3 | IS5 | ISH1 | Haloquadratum walsbyi | 36 | 8.3 |
| ISAar38 | IS5 | IS427 | Arthrobacter arilaitensis | 36 | 8.3 |
| ISRsp9 | IS6 | Rhizhobium sp. | 36 | 8.3 | |
| ISMsi3 | IS3 | IS407 | Methylocella silvestris | 36 | 8.3 |
| ISStag2 | IS481 | Stappia aggregata | 36 | 8.3 | |
| ISAcma29 | IS630 | Acaryochloris marina | 36 | 8.3 | |
| ISAcr3 | ISAs1 | Acidiphilium cryptum | 36 | 8.3 | |
| ISMex7 | IS3 | IS150 | Methylobacterium extorquens | 36 | 8.3 |
| ISGob5 | ISAs1 | Gemmata obscuriglobus | 36 | 8.3 | |
| ISThsp15 | IS630 | Thiomonas sp. | 36 | 8.3 | |
| ISThsp13 | IS1380 | Thiomonas sp. | 36 | 8.3 | |
| ISThsp5 | IS21 | Thiomonas sp. | 36 | 8.3 | |
| ISCARN29 | IS1595 | ISPna2 | Metagenomic data from CARNOULES | 36 | 8.3 |
| ISSav7 | IS481 | Streptomyces avermitilis | 36 | 8.3 | |
| ISCARN22 | IS66 | Metagenomic data from CARNOULES | 36 | 8.3 | |
| ISCARN14 | IS5 | IS1031 | Metagenomic data from CARNOULES | 36 | 8.3 |
| ISAnsp1 | IS1182 | Anaeromyxobacter sp. | 36 | 8.3 | |
| ISAli13 | IS21 | Azospirillum lipoferum | 36 | 8.3 | |
| ISAeh1 | IS66 | Alkalilimnicola ehrlichei | 36 | 8.3 | |
| ISAli5 | IS3 | IS150 | Azospirillum lipoferum | 36 | 8.3 |
| ISAli4 | IS3 | IS51 | Azospirillum lipoferum | 36 | 8.3 |
| ISAli2 | IS630 | Azospirillum lipoferum | 36 | 8.3 | |
| ISMxa3 | IS66 | ISBst12 | Myxococcus xanthus | 36 | 8.3 |
| ISAau4 | Tn3 | Arthrobacter aurescens | 36 | 8.3 | |
| ISTesp2 | ISL3 | Terrabacter sp. | 36 | 8.3 | |
| ISPre3 | IS66 | Pseudomonas resinovorans | 36 | 8.3 | |
| ISRusp1 | IS5 | IS903 | Ruegeria sp. | 36 | 8.3 |
| ISApr4 | IS1595 | ISNwi1 | Alpha proteobacterium | 36 | 8.3 |
| ISSer1 | IS110 | Saccharopolyspora erythraea | 36 | 8.3 | |
| ISBmu6 | IS3 | IS150 | Burkholderia multivorans | 36 | 8.3 |
| ISKpn6 | IS1182 | Klebsiella pneumoniae | 36 | 8.3 | |
| ISGur5 | IS3 | IS3 | Geobacter uraniireducens | 36 | 8.3 |
| ISRae1 | IS481 | Rhodococcus aetherivorans | 36 | 8.3 | |
| ISNfa1 | IS481 | Nocardia farcinica | 36 | 8.3 | |
| ISGbe2 | IS3 | IS2 | Granulibacter bethesdensis | 36 | 8.3 |
| ISAisp2 | IS3 | IS51 | Acidovorax sp. | 36 | 8.3 |
| ISBcen19 | IS66 | Burkholderia cenocepacia | 36 | 8.3 | |
| ISXax1 | IS256 | Xanthomonas axonopodis | 36 | 8.3 | |
| ISAzo4 | IS21 | Azoarcus sp. | 36 | 8.3 | |
| ISLxx3 | IS21 | Leifsonia xyli | 36 | 8.3 | |
| ISBlo8 | IS256 | Bifidobacterium longum | 36 | 8.3 | |
| ISRso19 | IS21 | - | Ralstonia solanacearum | 36 | 8.3 |
| ISRso11 | IS3 | IS150 | Ralstonia solanacearum | 36 | 8.3 |
| IS466 | ISL3 | - | Streptomyces coelicolor | 36 | 8.3 |
| ISSme3 | IS66 | Sinorhizobium medicae | 36 | 8.3 | |
| IS1539 | IS607 | Mycobacterium tuberculosis | 36 | 8.3 | |
| IS1311 | IS256 | - | Mycobacterium avium | 36 | 8.3 |
>ISThsp11
Length = 1814
Score = 48.1 bits (24), Expect = 0.002
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 88390 tcgcgaccatgtgcgtcggcgtcggccagggc 88421
|||||||||||||||| |||||||| ||||||
Sbjct: 1763 tcgcgaccatgtgcgtgggcgtcgggcagggc 1732
>ISFsp3
Length = 2209
Score = 44.1 bits (22), Expect = 0.034
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 40516 ggtcacgtcgacgaaccggccg 40537
||||||||||||||||||||||
Sbjct: 1056 ggtcacgtcgacgaaccggccg 1035
>ISGau4
Length = 1210
Score = 42.1 bits (21), Expect = 0.13
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 95886 tgcatttcaggaggagcgatg 95906
|||||||||||||||||||||
Sbjct: 47 tgcatttcaggaggagcgatg 67
>ISStu1
Length = 889
Score = 42.1 bits (21), Expect = 0.13
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 26820 gttgatgccggcctcggcgag 26840
|||||||||||||||||||||
Sbjct: 625 gttgatgccggcctcggcgag 605
>ISRjo3
Length = 1638
Score = 42.1 bits (21), Expect = 0.13
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 1236 cccagctcgtcgaaggcgtcgacgg 1260
|||||||||||||||||| ||||||
Sbjct: 1107 cccagctcgtcgaaggcgacgacgg 1131
>ISBad1
Length = 2525
Score = 42.1 bits (21), Expect = 0.13
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 43556 gccggtgaggtccttcaccgcgtcg 43580
||||||||||| |||||||||||||
Sbjct: 2064 gccggtgaggttcttcaccgcgtcg 2088
>ISMav1
Length = 2536
Score = 42.1 bits (21), Expect = 0.13
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 74523 cgtcacctccgaccagtcctaccggatgc 74551
||||||||||| | |||||||||||||||
Sbjct: 2402 cgtcacctccggcgagtcctaccggatgc 2430
Score = 36.2 bits (18), Expect = 8.3
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 35247 gctggccacggtgcgccg 35264
||||||||||||||||||
Sbjct: 1757 gctggccacggtgcgccg 1774
>IS1612
Length = 2532
Score = 42.1 bits (21), Expect = 0.13
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 74523 cgtcacctccgaccagtcctaccggatgc 74551
||||||||||| | |||||||||||||||
Sbjct: 2398 cgtcacctccggcgagtcctaccggatgc 2426
Score = 36.2 bits (18), Expect = 8.3
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 35247 gctggccacggtgcgccg 35264
||||||||||||||||||
Sbjct: 1753 gctggccacggtgcgccg 1770
>ISAzs17
Length = 7252
Score = 40.1 bits (20), Expect = 0.53
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 60171 tgcgggccgtgctgcgcgagaagg 60194
|||| |||||||||||||||||||
Sbjct: 2968 tgcgcgccgtgctgcgcgagaagg 2945
Score = 36.2 bits (18), Expect = 8.3
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 84863 cgagcggctcgccgccgaaggc 84884
|||||||||||| |||||||||
Sbjct: 4976 cgagcggctcgcggccgaaggc 4997
>ISNmo4
Length = 1176
Score = 40.1 bits (20), Expect = 0.53
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 84085 gaccgcgcggtcgtcctcgc 84104
||||||||||||||||||||
Sbjct: 722 gaccgcgcggtcgtcctcgc 703
>ISMno38
Length = 1466
Score = 40.1 bits (20), Expect = 0.53
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 487 gccgcccggcacagccacagcacc 510
|||||||||||||||| |||||||
Sbjct: 448 gccgcccggcacagccgcagcacc 425
>ISNosp1
Length = 1678
Score = 40.1 bits (20), Expect = 0.53
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 981 gcggaccatcgaggccgcgc 1000
||||||||||||||||||||
Sbjct: 777 gcggaccatcgaggccgcgc 758
Score = 38.2 bits (19), Expect = 2.1
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 24474 gaccggcttcgccgacctgttcgacgg 24500
||||| ||||||||||||| |||||||
Sbjct: 1221 gaccgtcttcgccgacctgatcgacgg 1247
>ISAde1
Length = 2957
Score = 40.1 bits (20), Expect = 0.53
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 89018 cgccgaggccgagcggatcg 89037
||||||||||||||||||||
Sbjct: 1043 cgccgaggccgagcggatcg 1062
>ISMdi11
Length = 1053
Score = 40.1 bits (20), Expect = 0.53
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 10583 gtgctcaccgacgacggcac 10602
||||||||||||||||||||
Sbjct: 630 gtgctcaccgacgacggcac 649
>ISCARN32
Length = 1151
Score = 40.1 bits (20), Expect = 0.53
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 54922 tgacctcgctgaggagatcg 54941
||||||||||||||||||||
Sbjct: 604 tgacctcgctgaggagatcg 585
>ISRhsp2
Length = 1299
Score = 40.1 bits (20), Expect = 0.53
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 77801 ggaggtcgagatcctgcgcg 77820
||||||||||||||||||||
Sbjct: 354 ggaggtcgagatcctgcgcg 373
>ISBlo1
Length = 2590
Score = 40.1 bits (20), Expect = 0.53
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 5257 gtgctcgccggcaccctcgccgag 5280
|||||||||||||| |||||||||
Sbjct: 1807 gtgctcgccggcacgctcgccgag 1830
>ISXc4
Length = 6938
Score = 40.1 bits (20), Expect = 0.53
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 72706 agccagccgttggagtaggcgaacagcg 72733
||||||||||||| |||| |||||||||
Sbjct: 2299 agccagccgttggcgtagtcgaacagcg 2272
>ISSco3
Length = 1101
Score = 40.1 bits (20), Expect = 0.53
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 15349 ggcgtagtagaagtagacgg 15368
||||||||||||||||||||
Sbjct: 461 ggcgtagtagaagtagacgg 442
>IS468A
Length = 1097
Score = 40.1 bits (20), Expect = 0.53
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 15349 ggcgtagtagaagtagacgg 15368
||||||||||||||||||||
Sbjct: 459 ggcgtagtagaagtagacgg 440
>ISAeme12
Length = 1426
Score = 38.2 bits (19), Expect = 2.1
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 74925 ccccttcgtcgcccccagc 74943
|||||||||||||||||||
Sbjct: 330 ccccttcgtcgcccccagc 348
>ISHamu1
Length = 1475
Score = 38.2 bits (19), Expect = 2.1
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 47060 gtcgttggcgaccttggcg 47078
|||||||||||||||||||
Sbjct: 987 gtcgttggcgaccttggcg 1005
>ISHaru1
Length = 1488
Score = 38.2 bits (19), Expect = 2.1
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 47060 gtcgttggcgaccttggcg 47078
|||||||||||||||||||
Sbjct: 988 gtcgttggcgaccttggcg 1006
>ISHru2
Length = 1942
Score = 38.2 bits (19), Expect = 2.1
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 24490 ctgttcgacggcgactcca 24508
|||||||||||||||||||
Sbjct: 1491 ctgttcgacggcgactcca 1473
>ISHmu6
Length = 1889
Score = 38.2 bits (19), Expect = 2.1
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 24490 ctgttcgacggcgactcca 24508
|||||||||||||||||||
Sbjct: 1498 ctgttcgacggcgactcca 1480
>ISTni1
Length = 2377
Score = 38.2 bits (19), Expect = 2.1
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 69190 tgcagctcgccgacctgga 69208
|||||||||||||||||||
Sbjct: 1530 tgcagctcgccgacctgga 1548
>ISSiac4
Length = 1519
Score = 38.2 bits (19), Expect = 2.1
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 27624 gtgggcgtcgtcggtgatg 27642
|||||||||||||||||||
Sbjct: 223 gtgggcgtcgtcggtgatg 205
>ISPa36
Length = 2468
Score = 38.2 bits (19), Expect = 2.1
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 58116 gatcgagacggtcgcctcg 58134
|||||||||||||||||||
Sbjct: 1517 gatcgagacggtcgcctcg 1535
>ISStsp6
Length = 1476
Score = 38.2 bits (19), Expect = 2.1
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 79104 cgcccgcgtcgagcacgtt 79122
|||||||||||||||||||
Sbjct: 1277 cgcccgcgtcgagcacgtt 1295
>ISPfr6
Length = 1436
Score = 38.2 bits (19), Expect = 2.1
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 16205 cggccgccacccgagcggt 16223
|||||||||||||||||||
Sbjct: 341 cggccgccacccgagcggt 323
>ISMch7
Length = 1412
Score = 38.2 bits (19), Expect = 2.1
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 41811 acgacgtcgtcgagacgct 41829
|||||||||||||||||||
Sbjct: 323 acgacgtcgtcgagacgct 341
>ISMpo3
Length = 1617
Score = 38.2 bits (19), Expect = 2.1
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 21458 atggcgcgcgggatcgggc 21476
|||||||||||||||||||
Sbjct: 1572 atggcgcgcgggatcgggc 1554
>ISAar6
Length = 1519
Score = 38.2 bits (19), Expect = 2.1
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 88778 cgacctcgtcgaggacttc 88796
|||||||||||||||||||
Sbjct: 612 cgacctcgtcgaggacttc 594
>ISMdi27
Length = 2476
Score = 38.2 bits (19), Expect = 2.1
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 24741 gatcgtcggcgacctgctc 24759
|||||||||||||||||||
Sbjct: 1716 gatcgtcggcgacctgctc 1734
>ISMex28
Length = 1310
Score = 38.2 bits (19), Expect = 2.1
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 23595 tgcggcccggccccggctgctcg 23617
||||||||||||||||| |||||
Sbjct: 598 tgcggcccggccccggcggctcg 576
>ISMex39
Length = 2456
Score = 38.2 bits (19), Expect = 2.1
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 24741 gatcgtcggcgacctgctc 24759
|||||||||||||||||||
Sbjct: 1700 gatcgtcggcgacctgctc 1718
>ISAzo21
Length = 2423
Score = 38.2 bits (19), Expect = 2.1
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 49118 gccaagcggctcgagtcgg 49136
|||||||||||||||||||
Sbjct: 592 gccaagcggctcgagtcgg 610
>ISAzo19
Length = 2423
Score = 38.2 bits (19), Expect = 2.1
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 49118 gccaagcggctcgagtcgg 49136
|||||||||||||||||||
Sbjct: 592 gccaagcggctcgagtcgg 610
>ISAli20
Length = 3828
Score = 38.2 bits (19), Expect = 2.1
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 90529 cgccctcgagctggccatcgcgc 90551
|||||||||||||||| ||||||
Sbjct: 2416 cgccctcgagctggccgtcgcgc 2394
Score = 36.2 bits (18), Expect = 8.3
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 67358 gcgcctgcgcgacggcca 67375
||||||||||||||||||
Sbjct: 2388 gcgcctgcgcgacggcca 2405
>ISGdi8
Length = 1356
Score = 38.2 bits (19), Expect = 2.1
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 20429 tcggcctcccgctcgaccc 20447
|||||||||||||||||||
Sbjct: 249 tcggcctcccgctcgaccc 267
>ISLxx6
Length = 919
Score = 38.2 bits (19), Expect = 2.1
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 32579 ccggaccggaaggtgttcg 32597
|||||||||||||||||||
Sbjct: 179 ccggaccggaaggtgttcg 197
>ISButh2
Length = 1336
Score = 38.2 bits (19), Expect = 2.1
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 87625 tcatgccgaagccggacgc 87643
|||||||||||||||||||
Sbjct: 1160 tcatgccgaagccggacgc 1178
>ISvEsV1_1
Length = 3603
Score = 38.2 bits (19), Expect = 2.1
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 68305 acgggtcagcccttccgga 68323
|||||||||||||||||||
Sbjct: 1647 acgggtcagcccttccgga 1665
>ISRle2
Length = 1116
Score = 38.2 bits (19), Expect = 2.1
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 24253 gggcgcgagtgccggctcg 24271
|||||||||||||||||||
Sbjct: 724 gggcgcgagtgccggctcg 706
>ISMyma3
Length = 1364
Score = 38.2 bits (19), Expect = 2.1
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 2277 cgagtacctcgccgacctc 2295
|||||||||||||||||||
Sbjct: 1244 cgagtacctcgccgacctc 1262
>ISHma12
Length = 1835
Score = 38.2 bits (19), Expect = 2.1
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 24490 ctgttcgacggcgactcca 24508
|||||||||||||||||||
Sbjct: 1444 ctgttcgacggcgactcca 1426
>ISBcen6
Length = 1335
Score = 38.2 bits (19), Expect = 2.1
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 87625 tcatgccgaagccggacgc 87643
|||||||||||||||||||
Sbjct: 1159 tcatgccgaagccggacgc 1177
>ISScl1
Length = 1099
Score = 38.2 bits (19), Expect = 2.1
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 15350 gcgtagtagaagtagacgg 15368
|||||||||||||||||||
Sbjct: 459 gcgtagtagaagtagacgg 441
>ISAzvi4
Length = 1351
Score = 38.2 bits (19), Expect = 2.1
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 21090 tgctgcagcgccagcacgcgcac 21112
|||||||||||| ||||||||||
Sbjct: 603 tgctgcagcgcctgcacgcgcac 625
>ISGsu2
Length = 1319
Score = 38.2 bits (19), Expect = 2.1
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 78182 ctggttcctcggcatgggc 78200
|||||||||||||||||||
Sbjct: 357 ctggttcctcggcatgggc 375
>ISH7B
Length = 2924
Score = 38.2 bits (19), Expect = 2.1
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 66623 ccgatgcgtcaaaggctgg 66641
|||||||||||||||||||
Sbjct: 1116 ccgatgcgtcaaaggctgg 1134
>ISH7A
Length = 3302
Score = 38.2 bits (19), Expect = 2.1
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 66623 ccgatgcgtcaaaggctgg 66641
|||||||||||||||||||
Sbjct: 1495 ccgatgcgtcaaaggctgg 1513
>ISBugl1
Length = 1335
Score = 38.2 bits (19), Expect = 2.1
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 87625 tcatgccgaagccggacgc 87643
|||||||||||||||||||
Sbjct: 1160 tcatgccgaagccggacgc 1178
>IS1601
Length = 1417
Score = 38.2 bits (19), Expect = 2.1
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 8606 cggcgtcggtgcggcggcg 8624
|||||||||||||||||||
Sbjct: 1185 cggcgtcggtgcggcggcg 1167
>IS1417
Length = 1335
Score = 38.2 bits (19), Expect = 2.1
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 87625 tcatgccgaagccggacgc 87643
|||||||||||||||||||
Sbjct: 1160 tcatgccgaagccggacgc 1178
>ISMyin1
Length = 1532
Score = 36.2 bits (18), Expect = 8.3
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 36579 gccgcgatcgaacgggcc 36596
||||||||||||||||||
Sbjct: 658 gccgcgatcgaacgggcc 641
>ISAeme13
Length = 1425
Score = 36.2 bits (18), Expect = 8.3
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 74925 ccccttcgtcgcccccag 74942
||||||||||||||||||
Sbjct: 329 ccccttcgtcgcccccag 346
>ISNaoc4
Length = 1568
Score = 36.2 bits (18), Expect = 8.3
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 55695 ggaccgccgtcgagtcgc 55712
||||||||||||||||||
Sbjct: 917 ggaccgccgtcgagtcgc 934
>ISHme3
Length = 1530
Score = 36.2 bits (18), Expect = 8.3
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 85824 gctcggcatcgagccgggcgac 85845
|||||| |||||||||||||||
Sbjct: 221 gctcggtatcgagccgggcgac 242
>ISHall1
Length = 1866
Score = 36.2 bits (18), Expect = 8.3
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 68296 gagagttccacgggtcag 68313
||||||||||||||||||
Sbjct: 11 gagagttccacgggtcag 28
>ISHla16
Length = 1836
Score = 36.2 bits (18), Expect = 8.3
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 37633 acgaggaggacggacgcg 37650
||||||||||||||||||
Sbjct: 806 acgaggaggacggacgcg 823
>ISPko3
Length = 1017
Score = 36.2 bits (18), Expect = 8.3
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 30361 cggccgcgccgaccggca 30378
||||||||||||||||||
Sbjct: 176 cggccgcgccgaccggca 193
>ISHmu5
Length = 1847
Score = 36.2 bits (18), Expect = 8.3
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 15041 gtctcgcacgcggccccgaacg 15062
||||||||| ||||||||||||
Sbjct: 672 gtctcgcacccggccccgaacg 651
>ISFsp17
Length = 1693
Score = 36.2 bits (18), Expect = 8.3
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 65030 cctggggcgtgctcgtcgacgg 65051
|||||| |||||||||||||||
Sbjct: 1089 cctgggtcgtgctcgtcgacgg 1110
>ISHoc2
Length = 1715
Score = 36.2 bits (18), Expect = 8.3
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 65030 cctggggcgtgctcgtcgacgg 65051
|||||| |||||||||||||||
Sbjct: 1053 cctgggtcgtgctcgtcgacgg 1074
>ISEnfa5
Length = 1686
Score = 36.2 bits (18), Expect = 8.3
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 67885 taggcgacgatcgagccg 67902
||||||||||||||||||
Sbjct: 1264 taggcgacgatcgagccg 1247
>ISHla9
Length = 1436
Score = 36.2 bits (18), Expect = 8.3
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 43508 gcccacggcggggcgggc 43525
||||||||||||||||||
Sbjct: 1090 gcccacggcggggcgggc 1107
>ISHla8
Length = 1460
Score = 36.2 bits (18), Expect = 8.3
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 43508 gcccacggcggggcgggc 43525
||||||||||||||||||
Sbjct: 1090 gcccacggcggggcgggc 1107
>ISApr14
Length = 1316
Score = 36.2 bits (18), Expect = 8.3
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 75580 agctcgtcgccgccgcgc 75597
||||||||||||||||||
Sbjct: 872 agctcgtcgccgccgcgc 889
>ISPa38
Length = 6455
Score = 36.2 bits (18), Expect = 8.3
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 50198 ctccgccgccgagcgcga 50215
||||||||||||||||||
Sbjct: 3476 ctccgccgccgagcgcga 3493
>ISPsy30
Length = 5167
Score = 36.2 bits (18), Expect = 8.3
Identities = 27/30 (90%)
Strand = Plus / Plus
Query: 60413 cacgacttcgatgggcaccacgggttcgac 60442
||||||||||| | |||||||| |||||||
Sbjct: 4344 cacgacttcgaggcgcaccacgtgttcgac 4373
>ISUnCu14
Length = 2442
Score = 36.2 bits (18), Expect = 8.3
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 48095 gcctcggtcggcatgccg 48112
||||||||||||||||||
Sbjct: 1417 gcctcggtcggcatgccg 1400
>ISSgr2
Length = 873
Score = 36.2 bits (18), Expect = 8.3
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 5258 tgctcgccggcaccctcgccga 5279
|||||| |||||||||||||||
Sbjct: 405 tgctcgacggcaccctcgccga 426
>ISMgi3
Length = 1770
Score = 36.2 bits (18), Expect = 8.3
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 15046 gcacgcggccccgaacgtggcg 15067
||||||||||||||| ||||||
Sbjct: 1302 gcacgcggccccgaaggtggcg 1281
>ISPmar3
Length = 1282
Score = 36.2 bits (18), Expect = 8.3
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 85423 tgcgccgcctcggccagc 85440
||||||||||||||||||
Sbjct: 1072 tgcgccgcctcggccagc 1089
>ISPkr1
Length = 2469
Score = 36.2 bits (18), Expect = 8.3
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 24741 gatcgtcggcgacctgct 24758
||||||||||||||||||
Sbjct: 1724 gatcgtcggcgacctgct 1741
>ISHwa12
Length = 1509
Score = 36.2 bits (18), Expect = 8.3
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 80258 cccgtcgcggtcgagaac 80275
||||||||||||||||||
Sbjct: 435 cccgtcgcggtcgagaac 418
>ISMamg2
Length = 1486
Score = 36.2 bits (18), Expect = 8.3
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 8242 cgagcaggtcagctcgac 8259
||||||||||||||||||
Sbjct: 1075 cgagcaggtcagctcgac 1092
>ISMtsp8
Length = 2371
Score = 36.2 bits (18), Expect = 8.3
Identities = 24/26 (92%)
Strand = Plus / Minus
Query: 95300 gaggtcaggacgatcgcgccgcgctc 95325
||||||||||| |||||||| |||||
Sbjct: 2050 gaggtcaggaccatcgcgccccgctc 2025
>ISArsp6
Length = 26712
Score = 36.2 bits (18), Expect = 8.3
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 11590 ccggctggccgcgccgtcggcg 11611
|||||||||||||||| |||||
Sbjct: 4782 ccggctggccgcgccgacggcg 4803
>ISArsp5
Length = 1426
Score = 36.2 bits (18), Expect = 8.3
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 11299 gcgcagccgggcctcgtc 11316
||||||||||||||||||
Sbjct: 338 gcgcagccgggcctcgtc 321
>ISAau2
Length = 2222
Score = 36.2 bits (18), Expect = 8.3
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 60375 tcgccgacctggaccggg 60392
||||||||||||||||||
Sbjct: 1106 tcgccgacctggaccggg 1123
Score = 36.2 bits (18), Expect = 8.3
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 59011 gcggcctcgggctcgaag 59028
||||||||||||||||||
Sbjct: 1930 gcggcctcgggctcgaag 1913
>ISHwa3
Length = 940
Score = 36.2 bits (18), Expect = 8.3
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 55797 cgcccgccgaaacgcggg 55814
||||||||||||||||||
Sbjct: 593 cgcccgccgaaacgcggg 610
>ISAar38
Length = 1010
Score = 36.2 bits (18), Expect = 8.3
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 69231 cgactcgacctgctcggccacc 69252
|||| |||||||||||||||||
Sbjct: 322 cgacacgacctgctcggccacc 343
>ISRsp9
Length = 818
Score = 36.2 bits (18), Expect = 8.3
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 57227 tgtggcgcgccgtcgatg 57244
||||||||||||||||||
Sbjct: 335 tgtggcgcgccgtcgatg 352
>ISMsi3
Length = 1107
Score = 36.2 bits (18), Expect = 8.3
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 946 tgctgctgcggcgggaag 963
||||||||||||||||||
Sbjct: 546 tgctgctgcggcgggaag 563
>ISStag2
Length = 1035
Score = 36.2 bits (18), Expect = 8.3
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 36026 cgacgcagcggcgtcagccggg 36047
||||||||||||||||| ||||
Sbjct: 124 cgacgcagcggcgtcagacggg 103
>ISAcma29
Length = 1210
Score = 36.2 bits (18), Expect = 8.3
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 2677 ctcaacgtggtcaacccg 2694
||||||||||||||||||
Sbjct: 688 ctcaacgtggtcaacccg 705
>ISAcr3
Length = 1232
Score = 36.2 bits (18), Expect = 8.3
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 87640 acgccgcctggtcccggc 87657
||||||||||||||||||
Sbjct: 465 acgccgcctggtcccggc 448
>ISMex7
Length = 1285
Score = 36.2 bits (18), Expect = 8.3
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 83479 ggcgccgcggccttcgcc 83496
||||||||||||||||||
Sbjct: 281 ggcgccgcggccttcgcc 264
>ISGob5
Length = 1308
Score = 36.2 bits (18), Expect = 8.3
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 32791 ggcgtgggccgggggcgg 32808
||||||||||||||||||
Sbjct: 173 ggcgtgggccgggggcgg 156
>ISThsp15
Length = 1482
Score = 36.2 bits (18), Expect = 8.3
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 4401 ctggggcgtgtggcaggc 4418
||||||||||||||||||
Sbjct: 883 ctggggcgtgtggcaggc 900
>ISThsp13
Length = 1583
Score = 36.2 bits (18), Expect = 8.3
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 94678 gatcggcgcggccgtcgt 94695
||||||||||||||||||
Sbjct: 1303 gatcggcgcggccgtcgt 1320
>ISThsp5
Length = 2652
Score = 36.2 bits (18), Expect = 8.3
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 24219 cctggcgcaggcgctgcagggg 24240
|||||||||| |||||||||||
Sbjct: 1346 cctggcgcagtcgctgcagggg 1325
>ISCARN29
Length = 1044
Score = 36.2 bits (18), Expect = 8.3
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 47260 cgccggccaggccgagga 47277
||||||||||||||||||
Sbjct: 683 cgccggccaggccgagga 700
>ISSav7
Length = 2992
Score = 36.2 bits (18), Expect = 8.3
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 16321 agcggccaccgcgccgcc 16338
||||||||||||||||||
Sbjct: 1249 agcggccaccgcgccgcc 1266
>ISCARN22
Length = 2674
Score = 36.2 bits (18), Expect = 8.3
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 87329 tgacctggctgcccgcgt 87346
||||||||||||||||||
Sbjct: 432 tgacctggctgcccgcgt 415
>ISCARN14
Length = 1226
Score = 36.2 bits (18), Expect = 8.3
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 38580 agagcacgcgcagcaccg 38597
||||||||||||||||||
Sbjct: 692 agagcacgcgcagcaccg 709
>ISAnsp1
Length = 1520
Score = 36.2 bits (18), Expect = 8.3
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 18117 gaccggcgtctccgggcg 18134
||||||||||||||||||
Sbjct: 1348 gaccggcgtctccgggcg 1365
>ISAli13
Length = 2756
Score = 36.2 bits (18), Expect = 8.3
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 16336 gccctcatcgacgccggc 16353
||||||||||||||||||
Sbjct: 2103 gccctcatcgacgccggc 2120
>ISAeh1
Length = 2320
Score = 36.2 bits (18), Expect = 8.3
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 79465 caagaccggcaaggccga 79482
||||||||||||||||||
Sbjct: 1773 caagaccggcaaggccga 1790
>ISAli5
Length = 1266
Score = 36.2 bits (18), Expect = 8.3
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 7926 cctgatcggggcggtcga 7943
||||||||||||||||||
Sbjct: 720 cctgatcggggcggtcga 703
>ISAli4
Length = 1324
Score = 36.2 bits (18), Expect = 8.3
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 1600 ggcgccggatcacctcgg 1617
||||||||||||||||||
Sbjct: 1124 ggcgccggatcacctcgg 1107
>ISAli2
Length = 1171
Score = 36.2 bits (18), Expect = 8.3
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 74666 tcatcggccagcaggcgg 74683
||||||||||||||||||
Sbjct: 359 tcatcggccagcaggcgg 342
>ISMxa3
Length = 1926
Score = 36.2 bits (18), Expect = 8.3
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 53196 cagcgaggcggtgaagaccgcg 53217
|||||||||||||||| |||||
Sbjct: 701 cagcgaggcggtgaagcccgcg 722
>ISAau4
Length = 3898
Score = 36.2 bits (18), Expect = 8.3
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 22729 gaggtgctcgacgccgcc 22746
||||||||||||||||||
Sbjct: 1695 gaggtgctcgacgccgcc 1712
>ISTesp2
Length = 1397
Score = 36.2 bits (18), Expect = 8.3
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 49472 ctcatcacccgcgtcgcc 49489
||||||||||||||||||
Sbjct: 1270 ctcatcacccgcgtcgcc 1287
>ISPre3
Length = 2957
Score = 36.2 bits (18), Expect = 8.3
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 49132 gtcggctccgacgccggcggag 49153
||||| ||||||||||||||||
Sbjct: 2151 gtcggttccgacgccggcggag 2172
>ISRusp1
Length = 1051
Score = 36.2 bits (18), Expect = 8.3
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 88363 tcgccgaccgcggcgccc 88380
||||||||||||||||||
Sbjct: 685 tcgccgaccgcggcgccc 702
>ISApr4
Length = 3691
Score = 36.2 bits (18), Expect = 8.3
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 82036 agatcgagctgacggtcggcgt 82057
||||||||| ||||||||||||
Sbjct: 358 agatcgagcggacggtcggcgt 379
>ISSer1
Length = 1447
Score = 36.2 bits (18), Expect = 8.3
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 86712 cccgctgccgggcatggaggtc 86733
|||| |||||||||||||||||
Sbjct: 1070 cccgatgccgggcatggaggtc 1049
>ISBmu6
Length = 1445
Score = 36.2 bits (18), Expect = 8.3
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 58685 cgacgttgaaccccgtcacgtc 58706
||||||||||| ||||||||||
Sbjct: 969 cgacgttgaactccgtcacgtc 948
>ISKpn6
Length = 1540
Score = 36.2 bits (18), Expect = 8.3
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 12682 gatggcgaggccggcggc 12699
||||||||||||||||||
Sbjct: 767 gatggcgaggccggcggc 750
>ISGur5
Length = 1760
Score = 36.2 bits (18), Expect = 8.3
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 2261 ggatgacggagcagatcg 2278
||||||||||||||||||
Sbjct: 804 ggatgacggagcagatcg 821
>ISRae1
Length = 1111
Score = 36.2 bits (18), Expect = 8.3
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 68932 ccgttgtcggtgacgacc 68949
||||||||||||||||||
Sbjct: 827 ccgttgtcggtgacgacc 810
>ISNfa1
Length = 1112
Score = 36.2 bits (18), Expect = 8.3
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 68930 cgccgttgtcggtgacga 68947
||||||||||||||||||
Sbjct: 830 cgccgttgtcggtgacga 813
>ISGbe2
Length = 1352
Score = 36.2 bits (18), Expect = 8.3
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 17155 tcgagcgtctcctcgacg 17172
||||||||||||||||||
Sbjct: 204 tcgagcgtctcctcgacg 187
>ISAisp2
Length = 1241
Score = 36.2 bits (18), Expect = 8.3
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 13161 cgcgctcctcggtcacgc 13178
||||||||||||||||||
Sbjct: 299 cgcgctcctcggtcacgc 282
>ISBcen19
Length = 2450
Score = 36.2 bits (18), Expect = 8.3
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 33066 gaaccccgccgacctcga 33083
||||||||||||||||||
Sbjct: 864 gaaccccgccgacctcga 881
>ISXax1
Length = 1329
Score = 36.2 bits (18), Expect = 8.3
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 37483 ccagacccgctgggccgg 37500
||||||||||||||||||
Sbjct: 378 ccagacccgctgggccgg 395
>ISAzo4
Length = 2757
Score = 36.2 bits (18), Expect = 8.3
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 11594 ctggccgcgccgtcggcg 11611
||||||||||||||||||
Sbjct: 2330 ctggccgcgccgtcggcg 2347
>ISLxx3
Length = 2637
Score = 36.2 bits (18), Expect = 8.3
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 38345 acgccgacgtggtcgccg 38362
||||||||||||||||||
Sbjct: 1479 acgccgacgtggtcgccg 1496
>ISBlo8
Length = 1408
Score = 36.2 bits (18), Expect = 8.3
Identities = 24/26 (92%)
Strand = Plus / Plus
Query: 61840 gccgatcggcgccgccgcggcggcgg 61865
||||| || |||||||||||||||||
Sbjct: 997 gccgagcgccgccgccgcggcggcgg 1022
>ISRso19
Length = 1956
Score = 36.2 bits (18), Expect = 8.3
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 46939 ccttgcgcttgtccttga 46956
||||||||||||||||||
Sbjct: 1838 ccttgcgcttgtccttga 1821
>ISRso11
Length = 1449
Score = 36.2 bits (18), Expect = 8.3
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 58685 cgacgttgaaccccgtcacgtc 58706
||||||||||| ||||||||||
Sbjct: 475 cgacgttgaactccgtcacgtc 496
>IS466
Length = 1628
Score = 36.2 bits (18), Expect = 8.3
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 89876 gctcaccctcgtcgacca 89893
||||||||||||||||||
Sbjct: 140 gctcaccctcgtcgacca 123
>ISSme3
Length = 3149
Score = 36.2 bits (18), Expect = 8.3
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 22811 ccgtcgccgaggcgctcg 22828
||||||||||||||||||
Sbjct: 3021 ccgtcgccgaggcgctcg 3038
>IS1539
Length = 2092
Score = 36.2 bits (18), Expect = 8.3
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 52427 ccggccgggtggccggtt 52444
||||||||||||||||||
Sbjct: 2030 ccggccgggtggccggtt 2013
>IS1311
Length = 1416
Score = 36.2 bits (18), Expect = 8.3
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 50316 tcggcggcctcgcgcagc 50333
||||||||||||||||||
Sbjct: 1063 tcggcggcctcgcgcagc 1046
Score = 36.2 bits (18), Expect = 8.3
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 63472 cgccgacgacatcaccgc 63489
||||||||||||||||||
Sbjct: 1058 cgccgacgacatcaccgc 1075
Score = 36.2 bits (18), Expect = 8.3
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 27408 gaagacgccgtcgacgtcggtg 27429
|||||||||| |||||||||||
Sbjct: 1181 gaagacgccgacgacgtcggtg 1160
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_14_length_86271_cov_111.9_ID_5196
(86,271 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISAnsp5 | IS21 | Anaeromyxobacter sp. | 42 | 0.12 | |
| ISDge14 | IS701 | Deinococcus geothermalis | 42 | 0.12 | |
| TnAs3 | Tn3 | Aeromonas salmonicida | 40 | 0.47 | |
| ISMyo1 | IS256 | Mycobacterium yongonense | 40 | 0.47 | |
| ISGsi1 | IS256 | IS1249 | Gordonia sihwensis | 40 | 0.47 |
| ISAzs13 | ISL3 | Azospirillum sp. | 40 | 0.47 | |
| ISMpo9 | IS701 | Methylobacterium populi | 40 | 0.47 | |
| ISApr6 | IS66 | Alpha proteobacterium | 40 | 0.47 | |
| ISAzo6 | IS1634 | Azoarcus sp. | 40 | 0.47 | |
| ISPpu7 | IS21 | - | Pseudomonas putida | 40 | 0.47 |
| IS469 | ISL3 | - | Streptomyces coelicolor | 40 | 0.47 |
| IS1600 | IS21 | - | Ralstonia eutropha | 40 | 0.47 |
| ISHla9 | ISH3 | Halorubrum lacusprofundi | 38 | 1.9 | |
| ISMlu11 | IS256 | Micrococcus luteus | 38 | 1.9 | |
| ISPa38 | Tn3 | Pseudomonas aeruginosa | 38 | 1.9 | |
| ISAzs29 | Tn3 | Azospirillum sp. | 38 | 1.9 | |
| ISAzs17 | Tn3 | Azospirillum sp. | 38 | 1.9 | |
| ISHch3 | IS5 | IS427 | Hahella chejuensis | 38 | 1.9 |
| ISSsv1 | IS5 | IS427 | Streptomyces sviceus | 38 | 1.9 |
| ISStsp6 | IS5 | ISL2 | Streptomyces sp | 38 | 1.9 |
| ISPaen2 | IS5 | IS5 | Paenibacillus sp. | 38 | 1.9 |
| ISGpr5 | IS5 | IS5 | Gamma proteobacterium | 38 | 1.9 |
| ISMtsp8 | IS21 | Methylobacterium sp. | 38 | 1.9 | |
| ISLsp5 | IS1380 | Leptospirillum sp. | 38 | 1.9 | |
| ISAnsp12 | IS66 | Anaeromyxobacter sp. | 38 | 1.9 | |
| ISMdi26 | IS5 | IS1031 | Methylobacterium dichloromethanicum | 38 | 1.9 |
| ISMex4 | IS1380 | Methylobacterium extorquens | 38 | 1.9 | |
| ISSav7 | IS481 | Streptomyces avermitilis | 38 | 1.9 | |
| ISRusp1 | IS5 | IS903 | Ruegeria sp. | 38 | 1.9 |
| ISChy4 | IS21 | Carboxydothermus hydrogenoformans | 38 | 1.9 | |
| ISXau1 | IS3 | IS407 | Xanthobacter autotrophicus | 38 | 1.9 |
| ISFsp8 | IS3 | IS3 | Frankia sp. | 38 | 1.9 |
| ISSpo8 | IS1595 | ISNwi1 | Silicibacter pomeroyi | 38 | 1.9 |
| IS1539 | IS607 | Mycobacterium tuberculosis | 38 | 1.9 | |
| IS1405 | IS5 | IS5 | Ralstonia solanacearum | 38 | 1.9 |
| ISMyin1 | ISNCY | ISDol1 | Mycobacterium indicus | 36 | 7.4 |
| ISHarch20 | IS200/IS605 | IS1341 | Halophilic archaeon | 36 | 7.4 |
| ISMno20 | IS110 | IS1111 | Methylobacterium nodulans | 36 | 7.4 |
| ISH1A | IS5 | ISH1 | Halobacterium salinarum | 36 | 7.4 |
| ISHti9 | IS200/IS605 | IS1341 | Halorhabdus tiamatea | 36 | 7.4 |
| ISHtu6 | IS200/IS605 | IS1341 | Haloterrigena turkmenica | 36 | 7.4 |
| ISFK1 | IS21 | Bradyrhizobium japonicum | 36 | 7.4 | |
| ISTni1 | ISKra4 | ISKra4 | Thioalkalivibrio nitratireducens | 36 | 7.4 |
| ISNamo13 | IS6 | Natronomonas moolapensis | 36 | 7.4 | |
| ISHth1 | ISH6 | Halococcus thailandensis | 36 | 7.4 | |
| ISAzba9 | ISL3 | Azospirillum brasilense | 36 | 7.4 | |
| ISStro2 | IS5 | ISL2 | Streptosporangium roseum | 36 | 7.4 |
| ISRel9 | IS110 | IS1111 | Rhizobium etli | 36 | 7.4 |
| ISVsp12 | IS630 | Verrucomicrobium spinosum | 36 | 7.4 | |
| ISPlc1 | IS5 | IS903 | Paracoccus alcaliphilus | 36 | 7.4 |
| ISMpo6 | IS1182 | Methylobacterium populi | 36 | 7.4 | |
| ISMtsp6 | IS110 | IS1111 | Methylobacterium sp. | 36 | 7.4 |
| ISMaa1 | IS1380 | Marine actinobacterium | 36 | 7.4 | |
| ISAar11 | IS1380 | Arthrobacter arilaitensis | 36 | 7.4 | |
| ISAzba5 | IS5 | IS427 | Azospirillum brasilense | 36 | 7.4 |
| ISMex37 | IS3 | IS150 | Methylobacterium extorquens | 36 | 7.4 |
| ISMex41 | IS630 | Methylobacterium extorquens | 36 | 7.4 | |
| ISMex13 | IS21 | Methylobacterium extorquens | 36 | 7.4 | |
| ISBusp1 | Tn3 | Burkholderia sp. | 36 | 7.4 | |
| ISThsp12 | IS1634 | Thiomonas sp. | 36 | 7.4 | |
| ISAzo27 | IS5 | IS5 | Azoarcus sp. | 36 | 7.4 |
| ISCARN26 | IS110 | Metagenomic data from CARNOULES | 36 | 7.4 | |
| ISCARN21 | IS630 | Metagenomic data from CARNOULES | 36 | 7.4 | |
| ISCARN16 | IS21 | Metagenomic data from CARNOULES | 36 | 7.4 | |
| ISAli20 | Tn3 | Azospirillum lipoferum | 36 | 7.4 | |
| ISBj7_B | IS66 | Bradyrhizobium japonicum | 36 | 7.4 | |
| ISXau4 | IS66 | Xanthobacter autotrophicus | 36 | 7.4 | |
| ISAli18 | ISL3 | Azospirillum lipoferum | 36 | 7.4 | |
| ISAli11 | ISL3 | Azospirillum lipoferum | 36 | 7.4 | |
| ISRhru2 | IS66 | ISBst12 | Rhodospirillum rubrum | 36 | 7.4 |
| ISAau4 | Tn3 | Arthrobacter aurescens | 36 | 7.4 | |
| ISBun2 | IS1595 | ISNwi1 | Bacteroides uniformis | 36 | 7.4 |
| ISSpo9 | IS5 | IS903 | Silicibacter pomeroyi | 36 | 7.4 |
| ISSer1 | IS110 | Saccharopolyspora erythraea | 36 | 7.4 | |
| ISRae1 | IS481 | Rhodococcus aetherivorans | 36 | 7.4 | |
| ISMysp4 | IS481 | Mycobacterium sp. | 36 | 7.4 | |
| ISSme1 | IS3 | IS407 | Sinorhizobium medicae | 36 | 7.4 |
| ISLsp1 | IS1595 | IS1595 | Leptospirillum sp. | 36 | 7.4 |
| ISRhosp3 | IS701 | Rhodococcus sp. | 36 | 7.4 | |
| ISApu1 | IS4 | ISH8 | Aeromonas punctata | 36 | 7.4 |
| ISFal3B | IS5 | IS1031 | Frankia alni | 36 | 7.4 |
| ISFal3A | IS5 | IS1031 | Frankia alni | 36 | 7.4 |
| ISH22 | IS200/IS605 | Halobacterium sp. | 36 | 7.4 | |
| ISAzo4 | IS21 | Azoarcus sp. | 36 | 7.4 | |
| ISLxx1 | IS21 | Leifsonia xyli | 36 | 7.4 | |
| ISPpa1 | IS256 | Paracoccus pantotrophus | 36 | 7.4 | |
| ISBlo6 | ISL3 | Bifidobacterium longum | 36 | 7.4 | |
| ISXcd1 | IS3 | IS407 | Xanthomonas axonopodis | 36 | 7.4 |
| ISTesp1 | IS3 | IS51 | Terrabacter sp. | 36 | 7.4 |
| ISH1 | IS5 | ISH1 | Halobacterium salinarum | 36 | 7.4 |
| IS931 | IS256 | - | Burkholderia cepacia | 36 | 7.4 |
| IS666 | IS256 | - | Mycobacterium avium | 36 | 7.4 |
| IS1407 | IS256 | - | Mycobacterium celatum | 36 | 7.4 |
| IS1001 | ISL3 | - | Bordetella parapertussis | 36 | 7.4 |
>ISAnsp5
Length = 2192
Score = 42.1 bits (21), Expect = 0.12
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 68077 cggcggtgaggagggcctcgacgcggtcg 68105
||||||||| ||| |||||||||||||||
Sbjct: 1146 cggcggtgacgagcgcctcgacgcggtcg 1118
>ISDge14
Length = 1152
Score = 42.1 bits (21), Expect = 0.12
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 63971 cagcgccacccgagccgcaac 63991
|||||||||||||||||||||
Sbjct: 1049 cagcgccacccgagccgcaac 1029
>TnAs3
Length = 18735
Score = 40.1 bits (20), Expect = 0.47
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11026 ccaccggcgcgagcccggcc 11045
||||||||||||||||||||
Sbjct: 2401 ccaccggcgcgagcccggcc 2420
>ISMyo1
Length = 1472
Score = 40.1 bits (20), Expect = 0.47
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 84130 gcagcgcggcgatgacctggggca 84153
||||||||||||||| ||||||||
Sbjct: 1363 gcagcgcggcgatgagctggggca 1340
>ISGsi1
Length = 1310
Score = 40.1 bits (20), Expect = 0.47
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 4988 gcccgaccacgtcatcgccc 5007
||||||||||||||||||||
Sbjct: 285 gcccgaccacgtcatcgccc 304
>ISAzs13
Length = 1769
Score = 40.1 bits (20), Expect = 0.47
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 47364 tgaggagctcgcgcagcgcatcgg 47387
|||||| |||||||||||||||||
Sbjct: 829 tgaggacctcgcgcagcgcatcgg 806
>ISMpo9
Length = 1413
Score = 40.1 bits (20), Expect = 0.47
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 67496 cgcgtcgaggccgtgccggcacgcggca 67523
|||||||||||| |||||| ||||||||
Sbjct: 705 cgcgtcgaggccatgccggaacgcggca 678
>ISApr6
Length = 2479
Score = 40.1 bits (20), Expect = 0.47
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 55660 cgagggatgccgtgccgttg 55679
||||||||||||||||||||
Sbjct: 294 cgagggatgccgtgccgttg 313
>ISAzo6
Length = 1925
Score = 40.1 bits (20), Expect = 0.47
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 29103 cgcaccgcctcgagcccctcgagg 29126
||||||||||||||| ||||||||
Sbjct: 1014 cgcaccgcctcgagcgcctcgagg 991
>ISPpu7
Length = 2598
Score = 40.1 bits (20), Expect = 0.47
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 77571 tctggctggtgacgatggtc 77590
||||||||||||||||||||
Sbjct: 2337 tctggctggtgacgatggtc 2318
>IS469
Length = 1647
Score = 40.1 bits (20), Expect = 0.47
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 32909 gggcccggcggatcgcctcg 32928
||||||||||||||||||||
Sbjct: 741 gggcccggcggatcgcctcg 722
>IS1600
Length = 2520
Score = 40.1 bits (20), Expect = 0.47
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 71634 agcgcacctcgcgctcggcg 71653
||||||||||||||||||||
Sbjct: 1826 agcgcacctcgcgctcggcg 1807
>ISHla9
Length = 1436
Score = 38.2 bits (19), Expect = 1.9
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 68090 ggcctcgacgcggtcgagg 68108
|||||||||||||||||||
Sbjct: 617 ggcctcgacgcggtcgagg 599
>ISMlu11
Length = 1434
Score = 38.2 bits (19), Expect = 1.9
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 29647 agcaggccctcgcccggctcgcc 29669
||||||||||||||| |||||||
Sbjct: 1343 agcaggccctcgcccagctcgcc 1365
>ISPa38
Length = 6455
Score = 38.2 bits (19), Expect = 1.9
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 74967 ctctccgccgccgagcgcg 74985
|||||||||||||||||||
Sbjct: 3474 ctctccgccgccgagcgcg 3492
>ISAzs29
Length = 3897
Score = 38.2 bits (19), Expect = 1.9
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 82339 cgcgacgtcctcggcgaaccggt 82361
||||||| |||||||||||||||
Sbjct: 1961 cgcgacgacctcggcgaaccggt 1939
Score = 36.2 bits (18), Expect = 7.4
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 58324 tcctcggccggcaggccg 58341
||||||||||||||||||
Sbjct: 2683 tcctcggccggcaggccg 2666
>ISAzs17
Length = 7252
Score = 38.2 bits (19), Expect = 1.9
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 12799 ggccggacggctggctgcc 12817
|||||||||||||||||||
Sbjct: 3511 ggccggacggctggctgcc 3529
>ISHch3
Length = 965
Score = 38.2 bits (19), Expect = 1.9
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 62882 tgctgccgcgcctccaccg 62900
|||||||||||||||||||
Sbjct: 659 tgctgccgcgcctccaccg 641
>ISSsv1
Length = 967
Score = 38.2 bits (19), Expect = 1.9
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 5764 cgagtcgtagccggcgtcg 5782
|||||||||||||||||||
Sbjct: 667 cgagtcgtagccggcgtcg 649
>ISStsp6
Length = 1476
Score = 38.2 bits (19), Expect = 1.9
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 65363 cgacgacctcgggccgatgctcg 65385
|||| ||||||||||||||||||
Sbjct: 890 cgaccacctcgggccgatgctcg 912
>ISPaen2
Length = 1786
Score = 38.2 bits (19), Expect = 1.9
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 10628 gatcgtgcgcgggaaagcc 10646
|||||||||||||||||||
Sbjct: 1242 gatcgtgcgcgggaaagcc 1260
>ISGpr5
Length = 1558
Score = 38.2 bits (19), Expect = 1.9
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 75619 gcaccgcgtcgccgcgggt 75637
|||||||||||||||||||
Sbjct: 1341 gcaccgcgtcgccgcgggt 1323
>ISMtsp8
Length = 2371
Score = 38.2 bits (19), Expect = 1.9
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 37236 ggctcaggggcggccggcagggt 37258
||||||||||||||||| |||||
Sbjct: 72 ggctcaggggcggccgggagggt 50
>ISLsp5
Length = 1759
Score = 38.2 bits (19), Expect = 1.9
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1184 ctttccgccagcgcccgac 1202
|||||||||||||||||||
Sbjct: 743 ctttccgccagcgcccgac 725
Score = 36.2 bits (18), Expect = 7.4
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 80281 cgacgaagatcgcatcgaggtc 80302
|||||||| |||||||||||||
Sbjct: 568 cgacgaagctcgcatcgaggtc 547
>ISAnsp12
Length = 2926
Score = 38.2 bits (19), Expect = 1.9
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 50357 ccgggccgtcgccgcggcgctgt 50379
||||||| |||||||||||||||
Sbjct: 439 ccgggccctcgccgcggcgctgt 461
>ISMdi26
Length = 859
Score = 38.2 bits (19), Expect = 1.9
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 23266 cggagcgggagccggagcc 23284
|||||||||||||||||||
Sbjct: 329 cggagcgggagccggagcc 347
>ISMex4
Length = 1615
Score = 38.2 bits (19), Expect = 1.9
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 47415 cctgcgcctgctcaagctt 47433
|||||||||||||||||||
Sbjct: 1334 cctgcgcctgctcaagctt 1352
>ISSav7
Length = 2992
Score = 38.2 bits (19), Expect = 1.9
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 33522 cccggtcgacgaggagccg 33540
|||||||||||||||||||
Sbjct: 2071 cccggtcgacgaggagccg 2053
Score = 36.2 bits (18), Expect = 7.4
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 34044 ccgatcagctcggccagc 34061
||||||||||||||||||
Sbjct: 1811 ccgatcagctcggccagc 1794
>ISRusp1
Length = 1051
Score = 38.2 bits (19), Expect = 1.9
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 81510 ccatcgaggtcaccggaag 81528
|||||||||||||||||||
Sbjct: 550 ccatcgaggtcaccggaag 568
>ISChy4
Length = 2172
Score = 38.2 bits (19), Expect = 1.9
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 32604 gtccctgccgtatgccgct 32622
|||||||||||||||||||
Sbjct: 421 gtccctgccgtatgccgct 439
>ISXau1
Length = 1272
Score = 38.2 bits (19), Expect = 1.9
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 67967 ggcgagggcggcccgggcctggg 67989
|||||||||||||| ||||||||
Sbjct: 1059 ggcgagggcggccctggcctggg 1037
>ISFsp8
Length = 1297
Score = 38.2 bits (19), Expect = 1.9
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 62119 gtccgccgcgacttcaccg 62137
|||||||||||||||||||
Sbjct: 708 gtccgccgcgacttcaccg 726
>ISSpo8
Length = 1863
Score = 38.2 bits (19), Expect = 1.9
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 10246 cttcacgaacatgctcggc 10264
|||||||||||||||||||
Sbjct: 1298 cttcacgaacatgctcggc 1316
>IS1539
Length = 2092
Score = 38.2 bits (19), Expect = 1.9
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 39667 ccggctgcccggttggctcgtcg 39689
|||||||||||| ||||||||||
Sbjct: 206 ccggctgcccggctggctcgtcg 184
>IS1405
Length = 1174
Score = 38.2 bits (19), Expect = 1.9
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 41762 ggcaagcgcgaccccgaga 41780
|||||||||||||||||||
Sbjct: 526 ggcaagcgcgaccccgaga 544
>ISMyin1
Length = 1532
Score = 36.2 bits (18), Expect = 7.4
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 72967 ccgcgacggtggcgcgga 72984
||||||||||||||||||
Sbjct: 559 ccgcgacggtggcgcgga 576
>ISHarch20
Length = 1533
Score = 36.2 bits (18), Expect = 7.4
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 52332 gaccctgaagggtcaggc 52349
||||||||||||||||||
Sbjct: 35 gaccctgaagggtcaggc 18
>ISMno20
Length = 1798
Score = 36.2 bits (18), Expect = 7.4
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 80307 tgccgatccagcagctcg 80324
||||||||||||||||||
Sbjct: 990 tgccgatccagcagctcg 973
>ISH1A
Length = 1122
Score = 36.2 bits (18), Expect = 7.4
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 35164 tcgctcagtcggcttgcttgga 35185
|||||||| |||||||||||||
Sbjct: 99 tcgctcagacggcttgcttgga 120
>ISHti9
Length = 1587
Score = 36.2 bits (18), Expect = 7.4
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 65038 ctacgatgagcacgctga 65055
||||||||||||||||||
Sbjct: 673 ctacgatgagcacgctga 690
>ISHtu6
Length = 1516
Score = 36.2 bits (18), Expect = 7.4
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 6418 tggtcgttccggccggat 6435
||||||||||||||||||
Sbjct: 1229 tggtcgttccggccggat 1212
>ISFK1
Length = 2592
Score = 36.2 bits (18), Expect = 7.4
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 70784 tcgaggcgctcgcgctcg 70801
||||||||||||||||||
Sbjct: 2149 tcgaggcgctcgcgctcg 2166
>ISTni1
Length = 2377
Score = 36.2 bits (18), Expect = 7.4
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 13558 cggctttcacccgctgga 13575
||||||||||||||||||
Sbjct: 1348 cggctttcacccgctgga 1365
>ISNamo13
Length = 745
Score = 36.2 bits (18), Expect = 7.4
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 34737 acgagcaggtcgtcgagg 34754
||||||||||||||||||
Sbjct: 30 acgagcaggtcgtcgagg 47
>ISHth1
Length = 1445
Score = 36.2 bits (18), Expect = 7.4
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 25380 gatctcggtgcgccgctc 25397
||||||||||||||||||
Sbjct: 964 gatctcggtgcgccgctc 947
>ISAzba9
Length = 1847
Score = 36.2 bits (18), Expect = 7.4
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 26267 gcgcaccctcggcgacctcgcg 26288
||||| ||||||||||||||||
Sbjct: 296 gcgcagcctcggcgacctcgcg 317
>ISStro2
Length = 912
Score = 36.2 bits (18), Expect = 7.4
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 85551 aaccggcggccaggcggg 85568
||||||||||||||||||
Sbjct: 305 aaccggcggccaggcggg 288
>ISRel9
Length = 1553
Score = 36.2 bits (18), Expect = 7.4
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 27526 tcccgtcgacgtcggcgt 27543
||||||||||||||||||
Sbjct: 409 tcccgtcgacgtcggcgt 426
>ISVsp12
Length = 1125
Score = 36.2 bits (18), Expect = 7.4
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 81621 gggggaggtggctgaagg 81638
||||||||||||||||||
Sbjct: 864 gggggaggtggctgaagg 881
>ISPlc1
Length = 1050
Score = 36.2 bits (18), Expect = 7.4
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 66991 cggcggcgacgctgccgatctc 67012
|||||| |||||||||||||||
Sbjct: 646 cggcggtgacgctgccgatctc 625
>ISMpo6
Length = 1593
Score = 36.2 bits (18), Expect = 7.4
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 12319 ttgccgcgcgtggccagcgccc 12340
|||||||||||||||| |||||
Sbjct: 797 ttgccgcgcgtggccatcgccc 776
>ISMtsp6
Length = 1495
Score = 36.2 bits (18), Expect = 7.4
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 80904 aactcggcgatggccgcctcga 80925
||||| ||||||||||||||||
Sbjct: 742 aactcagcgatggccgcctcga 721
>ISMaa1
Length = 1650
Score = 36.2 bits (18), Expect = 7.4
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 68501 ggccgcatcgagctggcg 68518
||||||||||||||||||
Sbjct: 465 ggccgcatcgagctggcg 448
>ISAar11
Length = 1737
Score = 36.2 bits (18), Expect = 7.4
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 57285 cccggtggccgtcgtcga 57302
||||||||||||||||||
Sbjct: 1683 cccggtggccgtcgtcga 1666
>ISAzba5
Length = 840
Score = 36.2 bits (18), Expect = 7.4
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 74854 cgtcggtcatcaacgcgc 74871
||||||||||||||||||
Sbjct: 173 cgtcggtcatcaacgcgc 156
Score = 36.2 bits (18), Expect = 7.4
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 78356 tcggcaacctgaccgccg 78373
||||||||||||||||||
Sbjct: 520 tcggcaacctgaccgccg 503
>ISMex37
Length = 1510
Score = 36.2 bits (18), Expect = 7.4
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 13157 cgggccgtgtcaccggcg 13174
||||||||||||||||||
Sbjct: 327 cgggccgtgtcaccggcg 310
>ISMex41
Length = 1048
Score = 36.2 bits (18), Expect = 7.4
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 54894 gggcgcgcatctcctcca 54911
||||||||||||||||||
Sbjct: 350 gggcgcgcatctcctcca 333
>ISMex13
Length = 2359
Score = 36.2 bits (18), Expect = 7.4
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 80084 gccggccagcaggcgcag 80101
||||||||||||||||||
Sbjct: 508 gccggccagcaggcgcag 525
>ISBusp1
Length = 3169
Score = 36.2 bits (18), Expect = 7.4
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 4843 cggccgcgatcggctgcc 4860
||||||||||||||||||
Sbjct: 2823 cggccgcgatcggctgcc 2806
>ISThsp12
Length = 2004
Score = 36.2 bits (18), Expect = 7.4
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 67942 cgccggccagcgtggcct 67959
||||||||||||||||||
Sbjct: 1047 cgccggccagcgtggcct 1030
>ISAzo27
Length = 1164
Score = 36.2 bits (18), Expect = 7.4
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 59630 tctcggcgaggaagcgct 59647
||||||||||||||||||
Sbjct: 138 tctcggcgaggaagcgct 121
>ISCARN26
Length = 1214
Score = 36.2 bits (18), Expect = 7.4
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 82226 accaggcgctcgtagaag 82243
||||||||||||||||||
Sbjct: 1073 accaggcgctcgtagaag 1056
>ISCARN21
Length = 1249
Score = 36.2 bits (18), Expect = 7.4
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 39721 tctcgtcgacgctgacgg 39738
||||||||||||||||||
Sbjct: 706 tctcgtcgacgctgacgg 689
>ISCARN16
Length = 2594
Score = 36.2 bits (18), Expect = 7.4
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 38293 tcgcgcggcgctcgctca 38310
||||||||||||||||||
Sbjct: 2458 tcgcgcggcgctcgctca 2441
>ISAli20
Length = 3828
Score = 36.2 bits (18), Expect = 7.4
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 34734 tggacgagcaggtcgtcg 34751
||||||||||||||||||
Sbjct: 3644 tggacgagcaggtcgtcg 3627
>ISBj7_B
Length = 2865
Score = 36.2 bits (18), Expect = 7.4
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 79595 aggacatcgagcaggcca 79612
||||||||||||||||||
Sbjct: 1155 aggacatcgagcaggcca 1172
>ISXau4
Length = 2458
Score = 36.2 bits (18), Expect = 7.4
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 61755 cctgccgctcctgcgcgg 61772
||||||||||||||||||
Sbjct: 1352 cctgccgctcctgcgcgg 1369
>ISAli18
Length = 1752
Score = 36.2 bits (18), Expect = 7.4
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 80093 caggcgcagcagcgtgtc 80110
||||||||||||||||||
Sbjct: 513 caggcgcagcagcgtgtc 496
>ISAli11
Length = 1739
Score = 36.2 bits (18), Expect = 7.4
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 80093 caggcgcagcagcgtgtc 80110
||||||||||||||||||
Sbjct: 501 caggcgcagcagcgtgtc 484
>ISRhru2
Length = 1443
Score = 36.2 bits (18), Expect = 7.4
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 54128 tcgatcagcgcggcctgctccg 54149
||||||||||| ||||||||||
Sbjct: 141 tcgatcagcgccgcctgctccg 120
>ISAau4
Length = 3898
Score = 36.2 bits (18), Expect = 7.4
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 35075 gagcgtcgtcaccccggg 35092
||||||||||||||||||
Sbjct: 575 gagcgtcgtcaccccggg 558
>ISBun2
Length = 4739
Score = 36.2 bits (18), Expect = 7.4
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 71799 tgcgggagaagaaggcga 71816
||||||||||||||||||
Sbjct: 3369 tgcgggagaagaaggcga 3386
>ISSpo9
Length = 1049
Score = 36.2 bits (18), Expect = 7.4
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 66991 cggcggcgacgctgccgatctc 67012
|||||| |||||||||||||||
Sbjct: 645 cggcggtgacgctgccgatctc 624
>ISSer1
Length = 1447
Score = 36.2 bits (18), Expect = 7.4
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 63114 tcgcctcgacgagggcct 63131
||||||||||||||||||
Sbjct: 882 tcgcctcgacgagggcct 865
>ISRae1
Length = 1111
Score = 36.2 bits (18), Expect = 7.4
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 27449 caggtagacgtagccggc 27466
||||||||||||||||||
Sbjct: 675 caggtagacgtagccggc 658
>ISMysp4
Length = 1090
Score = 36.2 bits (18), Expect = 7.4
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 70639 gagccggacgtaggccca 70656
||||||||||||||||||
Sbjct: 960 gagccggacgtaggccca 943
>ISSme1
Length = 1271
Score = 36.2 bits (18), Expect = 7.4
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 33545 agctgctcgccgagcaga 33562
||||||||||||||||||
Sbjct: 266 agctgctcgccgagcaga 283
>ISLsp1
Length = 1031
Score = 36.2 bits (18), Expect = 7.4
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 81172 ggcgctggccttcggggt 81189
||||||||||||||||||
Sbjct: 182 ggcgctggccttcggggt 199
>ISRhosp3
Length = 1349
Score = 36.2 bits (18), Expect = 7.4
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 70725 cgccgagcgagccggtga 70742
||||||||||||||||||
Sbjct: 190 cgccgagcgagccggtga 207
>ISApu1
Length = 1384
Score = 36.2 bits (18), Expect = 7.4
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 30172 cctggccgagcgggccatcgcc 30193
||||| ||||||||||||||||
Sbjct: 384 cctggtcgagcgggccatcgcc 405
>ISFal3B
Length = 1130
Score = 36.2 bits (18), Expect = 7.4
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 18879 ccctcgggctgctgctca 18896
||||||||||||||||||
Sbjct: 517 ccctcgggctgctgctca 534
>ISFal3A
Length = 1087
Score = 36.2 bits (18), Expect = 7.4
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 18879 ccctcgggctgctgctca 18896
||||||||||||||||||
Sbjct: 517 ccctcgggctgctgctca 534
>ISH22
Length = 1700
Score = 36.2 bits (18), Expect = 7.4
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 8085 cgacggagacgccgacct 8102
||||||||||||||||||
Sbjct: 636 cgacggagacgccgacct 653
Score = 36.2 bits (18), Expect = 7.4
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 57530 cgtccgtgagggcgatgt 57547
||||||||||||||||||
Sbjct: 879 cgtccgtgagggcgatgt 896
>ISAzo4
Length = 2757
Score = 36.2 bits (18), Expect = 7.4
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 77048 cgcgcgttcgcccgcacg 77065
||||||||||||||||||
Sbjct: 610 cgcgcgttcgcccgcacg 627
>ISLxx1
Length = 2205
Score = 36.2 bits (18), Expect = 7.4
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 54432 ccgtgaccgtgtcgcgga 54449
||||||||||||||||||
Sbjct: 344 ccgtgaccgtgtcgcgga 361
>ISPpa1
Length = 1376
Score = 36.2 bits (18), Expect = 7.4
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 73348 cagcttggcgagcgcctt 73365
||||||||||||||||||
Sbjct: 1061 cagcttggcgagcgcctt 1044
>ISBlo6
Length = 1330
Score = 36.2 bits (18), Expect = 7.4
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 69293 acaccaacgccgtcctcg 69310
||||||||||||||||||
Sbjct: 1156 acaccaacgccgtcctcg 1173
>ISXcd1
Length = 1195
Score = 36.2 bits (18), Expect = 7.4
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 50646 gccgaggtcggcacgcccgtgc 50667
||||||| ||||||||||||||
Sbjct: 121 gccgaggccggcacgcccgtgc 142
>ISTesp1
Length = 1353
Score = 36.2 bits (18), Expect = 7.4
Identities = 24/26 (92%)
Strand = Plus / Plus
Query: 62112 ggacctggtccgccgcgacttcaccg 62137
||||||||| |||||||||||||||
Sbjct: 752 ggacctggtgggccgcgacttcaccg 777
>ISH1
Length = 1118
Score = 36.2 bits (18), Expect = 7.4
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 35164 tcgctcagtcggcttgcttgga 35185
|||||||| |||||||||||||
Sbjct: 99 tcgctcagacggcttgcttgga 120
>IS931
Length = 1477
Score = 36.2 bits (18), Expect = 7.4
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 66033 tcgagggcgaacgcttca 66050
||||||||||||||||||
Sbjct: 1392 tcgagggcgaacgcttca 1375
>IS666
Length = 1472
Score = 36.2 bits (18), Expect = 7.4
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 84849 cgaaggccttggcctcggcctg 84870
||||||||||||||||| ||||
Sbjct: 633 cgaaggccttggcctcgtcctg 612
>IS1407
Length = 1422
Score = 36.2 bits (18), Expect = 7.4
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 78988 tcgaggtgttccgcgact 79005
||||||||||||||||||
Sbjct: 1028 tcgaggtgttccgcgact 1011
>IS1001
Length = 1306
Score = 36.2 bits (18), Expect = 7.4
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 8211 gccgctgctgacggtcta 8228
||||||||||||||||||
Sbjct: 982 gccgctgctgacggtcta 999
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_15_length_74472_cov_83.3851_ID_5198
(74,472 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISMsm5 | IS630 | Mycobacterium smegmatis | 50 | 4e-04 | |
| ISNpe8 | IS66 | ISBst12 | Natrinema pellirubrum | 44 | 0.026 |
| ISRce1 | ISAs1 | Rhodospirillum centenum | 44 | 0.026 | |
| ISH10B | IS66 | ISBst12 | Halobacterium sp | 44 | 0.026 |
| ISHha2 | IS5 | Halorhodospira halophila | 42 | 0.10 | |
| ISMaa1 | IS1380 | Marine actinobacterium | 42 | 0.10 | |
| ISAeme25 | IS256 | Aeromonas media | 40 | 0.41 | |
| ISAzs22 | ISAs1 | Azospirillum sp. | 40 | 0.41 | |
| ISAnsp12 | IS66 | Anaeromyxobacter sp. | 40 | 0.41 | |
| ISDge15 | IS6 | Deinococcus geothermalis | 40 | 0.41 | |
| ISBcen6 | IS3 | IS2 | Burkholderia cenocepacia | 40 | 0.41 |
| IS1110 | IS110 | - | Mycobacterium avium | 40 | 0.41 |
| ISTha3 | IS91 | Thauera sp. | 38 | 1.6 | |
| TnAs3 | Tn3 | Aeromonas salmonicida | 38 | 1.6 | |
| TnAs2 | Tn3 | Aeromonas salmonicida | 38 | 1.6 | |
| ISStu2 | ISAzo13 | Streptomyces turgidiscabies | 38 | 1.6 | |
| ISNamo12 | IS6 | Natronomonas moolapensis | 38 | 1.6 | |
| ISHala2 | ISH6 | Halobiforma lacisalsi | 38 | 1.6 | |
| ISRel15 | IS66 | Rhizobium etli | 38 | 1.6 | |
| ISShes11 | Tn3 | Shewanella sp. | 38 | 1.6 | |
| ISRhru3 | IS110 | IS1111 | Rhodospirillum rubrum | 38 | 1.6 |
| ISMno10 | IS1182 | Methylobacterium nodulans | 38 | 1.6 | |
| ISMpo6 | IS1182 | Methylobacterium populi | 38 | 1.6 | |
| ISMch8 | IS5 | IS5 | Methylobacterium chloromethanicum | 38 | 1.6 |
| ISAar27 | IS481 | Arthrobacter arilaitensis | 38 | 1.6 | |
| ISMav7 | IS1380 | Mycobacterium avium | 38 | 1.6 | |
| ISApr8 | IS1380 | alpha proteobacterium | 38 | 1.6 | |
| ISMex31 | IS110 | IS1111 | Methylobacterium extorquens | 38 | 1.6 |
| ISMex35 | IS5 | IS5 | Methylobacterium extorquens | 38 | 1.6 |
| ISMex41 | IS630 | Methylobacterium extorquens | 38 | 1.6 | |
| ISCARN74 | IS5 | IS5 | Metagenomic data from CARNOULES | 38 | 1.6 |
| ISAzo17 | IS21 | Azoarcus sp. | 38 | 1.6 | |
| ISThsp9 | Tn3 | Thiomonas sp. | 38 | 1.6 | |
| ISDsh3 | IS1595 | ISNha5 | Dinoroseobacter shibae | 38 | 1.6 |
| ISApr4 | IS1595 | ISNwi1 | Alpha proteobacterium | 38 | 1.6 |
| ISNha4 | IS3 | IS407 | Nitrobacter hamburgensis | 38 | 1.6 |
| ISMca3 | IS3 | IS51 | Methylococcus capsulatus | 38 | 1.6 |
| ISGvi5 | IS3 | IS3 | Gloeobacter violaceus | 38 | 1.6 |
| ISLxx3 | IS21 | Leifsonia xyli | 38 | 1.6 | |
| ISPa42 | Tn3 | Pseudomonas aeruginosa | 38 | 1.6 | |
| TnXo19 | Tn3 | Xanthomonas oryzae | 36 | 6.3 | |
| ISNch1 | IS200/IS605 | IS1341 | Natrialba chahannaoensis | 36 | 6.3 |
| ISHti13 | IS4 | ISH8 | Halorhabdus tiamatea | 36 | 6.3 |
| ISMno24 | IS91 | Methylobacterium nodulans | 36 | 6.3 | |
| ISHth3 | IS4 | IS4Sa | Halococcus thailandensis | 36 | 6.3 |
| ISBmu5 | IS3 | IS150 | Burkholderia multivorans | 36 | 6.3 |
| ISAs22 | IS3 | IS407 | Aeromonas salmonicida | 36 | 6.3 |
| ISKpn27 | IS481 | Klebsiella pneumoniae | 36 | 6.3 | |
| ISKpn25 | ISL3 | Klebsiella pneumoniae | 36 | 6.3 | |
| ISNpe25 | IS66 | ISBst12 | Natrinema pellirubrum | 36 | 6.3 |
| ISNpe24 | IS66 | ISBst12 | Natrinema pellirubrum | 36 | 6.3 |
| ISUnCu7 | ISKra4 | ISAzba1 | Uncultured bacterium | 36 | 6.3 |
| ISFsp17 | ISKra4 | ISKra4 | Frankia sp. | 36 | 6.3 |
| ISBibr1 | IS256 | IS1249 | Bifidobacterium breve | 36 | 6.3 |
| ISHla6 | IS5 | Halorubrum lacusprofundi | 36 | 6.3 | |
| ISPa40 | Tn3 | Pseudomonas aeruginosa | 36 | 6.3 | |
| ISMesi1 | IS3 | IS150 | Meiothermus silvanus | 36 | 6.3 |
| ISAzs30 | IS21 | Azospirillum sp. | 36 | 6.3 | |
| ISAzs29 | Tn3 | Azospirillum sp. | 36 | 6.3 | |
| ISAzs24 | IS3 | IS51 | Azospirillum sp. | 36 | 6.3 |
| ISAzs21 | IS66 | Azospirillum sp. | 36 | 6.3 | |
| ISAzs17 | Tn3 | Azospirillum sp. | 36 | 6.3 | |
| ISAzs14 | IS630 | Azospirillum sp. | 36 | 6.3 | |
| ISAzs12 | ISAs1 | Azospirillum sp. | 36 | 6.3 | |
| ISAzs10 | IS5 | Azospirillum sp. | 36 | 6.3 | |
| ISAzs8 | ISL3 | Azospirillum sp. | 36 | 6.3 | |
| ISAnsp14 | IS256 | Anaeromyxobacter sp. | 36 | 6.3 | |
| ISCsa9 | IS21 | Caldicellulosiruptor saccharolyticus | 36 | 6.3 | |
| ISRel24 | IS66 | Rhizobium etli | 36 | 6.3 | |
| ISRel19 | IS66 | Rhizobium etli | 36 | 6.3 | |
| ISSgr2 | IS5 | ISL2 | Streptomyces griseus | 36 | 6.3 |
| ISGeob3 | IS5 | ISL2 | Geodermatophilus obscurus | 36 | 6.3 |
| ISPse1 | IS1182 | Paracoccus seriniphilus | 36 | 6.3 | |
| ISHwa15 | ISNCY | Haloquadratum walsbyi | 36 | 6.3 | |
| ISStsp2 | ISAzo13 | Streptomyces sp. | 36 | 6.3 | |
| ISRop2 | ISAzo13 | Rhodococcus opacus | 36 | 6.3 | |
| ISMno15 | IS1182 | Methylobacterium nodulans | 36 | 6.3 | |
| ISMtsp8 | IS21 | Methylobacterium sp. | 36 | 6.3 | |
| ISPfr12 | IS3 | IS51 | Propionibacterium freudenreichii | 36 | 6.3 |
| ISAau5 | ISNCY | Arthrobacter aurescens | 36 | 6.3 | |
| ISArsp3 | IS110 | Arthrobacter sp. | 36 | 6.3 | |
| ISHwa3 | IS5 | ISH1 | Haloquadratum walsbyi | 36 | 6.3 |
| ISMgi4 | IS1182 | Mycobacterium gilvum | 36 | 6.3 | |
| ISAtu6 | IS66 | - | Agrobacterium tumefaciens | 36 | 6.3 |
| ISNosp1 | IS1380 | Nocardioides sp. | 36 | 6.3 | |
| ISMex13 | IS21 | Methylobacterium extorquens | 36 | 6.3 | |
| ISAnsp4 | IS21 | Anaeromyxobacter sp. | 36 | 6.3 | |
| ISAau1 | IS3 | IS407 | Arthrobacter aurescens | 36 | 6.3 |
| ISMex22 | Tn3 | Methylobacterium extorquens | 36 | 6.3 | |
| ISCARN58 | IS21 | Metagenomic data from CARNOULES | 36 | 6.3 | |
| ISThsp2 | IS21 | Thiomonas sp. | 36 | 6.3 | |
| ISAnsp3 | IS66 | Anaeromyxobacter sp. | 36 | 6.3 | |
| ISAli18 | ISL3 | Azospirillum lipoferum | 36 | 6.3 | |
| ISApr6 | IS66 | Alpha proteobacterium | 36 | 6.3 | |
| ISMno2 | IS66 | ISBst12 | Methylobacterium nodulans | 36 | 6.3 |
| ISVch3 | IS21 | Vibrio cholerae | 36 | 6.3 | |
| ISDds5 | IS982 | Deinococcus deserti | 36 | 6.3 | |
| ISBad1 | IS21 | Bifidobacterium adolescentis | 36 | 6.3 | |
| ISTesp2 | ISL3 | Terrabacter sp. | 36 | 6.3 | |
| ISPre3 | IS66 | Pseudomonas resinovorans | 36 | 6.3 | |
| ISSpal1 | IS481 | Sphingopyxis alaskensis | 36 | 6.3 | |
| ISPst6 | IS110 | IS1111 | Pseudomonas stutzeri | 36 | 6.3 |
| ISMca5 | IS256 | Methylococcus capsulatus | 36 | 6.3 | |
| ISMca2 | IS3 | IS3 | Methylococcus capsulatus | 36 | 6.3 |
| ISPosp1 | IS4 | IS4 | Polaromonas sp. | 36 | 6.3 |
| ISAzo5 | IS4 | IS50 | Azoarcus sp. | 36 | 6.3 |
| ISPpa5 | IS66 | Paracoccus pantotrophus | 36 | 6.3 | |
| ISAzvi2 | IS110 | IS1111 | Azotobacter vinelandii | 36 | 6.3 |
| ISGsu6 | IS21 | Geobacter sulfurreducens | 36 | 6.3 | |
| ISHla10 | ISH6 | Halorubrum lacusprofundi | 36 | 6.3 | |
| ISRsp2 | IS21 | - | Rhizobium sp. | 36 | 6.3 |
| ISH8D | IS4 | ISH8 | Halobacterium sp. | 36 | 6.3 |
| ISH8C | IS4 | ISH8 | Halobacterium sp | 36 | 6.3 |
| ISH8B | IS4 | ISH8 | Halobacterium sp | 36 | 6.3 |
| ISH8A | IS4 | ISH8 | Halobacterium sp. | 36 | 6.3 |
| ISH8 | IS4 | ISH8 | Halobacterium salinarum | 36 | 6.3 |
| ISH26-1 | IS4 | ISH8 | Halobacterium salinarum | 36 | 6.3 |
| ISH26 | IS4 | ISH8 | Halobacterium salinarum | 36 | 6.3 |
| ISAav1 | IS21 | - | Acidovorax avenae | 36 | 6.3 |
| IS931 | IS256 | - | Burkholderia cepacia | 36 | 6.3 |
| IS2001 | ISL3 | - | Bifidobacterium lactis | 36 | 6.3 |
| IS1549 | IS1634 | - | Mycobacterium smegmatis | 36 | 6.3 |
| ISHwa14 | IS5 | Haloquadratum walsbyi | 36 | 6.3 | |
| IS1372 | IS3 | IS51 | Streptomyces lividans | 36 | 6.3 |
| IS1131 | IS66 | - | Agrobacterium tumefaciens | 36 | 6.3 |
>ISMsm5
Length = 1103
Score = 50.1 bits (25), Expect = 4e-04
Identities = 57/67 (85%), Gaps = 3/67 (4%)
Strand = Plus / Minus
Query: 74399 gtgtcgcgcgtctgagtttcgtttacgggtggcgtggggcaggatctggtcagcggtctt 74458
||||||||||||||| || ||||||| ||| ||||||||||| | ||| ||||||||
Sbjct: 1103 gtgtcgcgcgtctgaagtttgtttacgagtg---tggggcaggatttcgtcggcggtctt 1047
Query: 74459 ggtccac 74465
|||||||
Sbjct: 1046 ggtccac 1040
>ISNpe8
Length = 1650
Score = 44.1 bits (22), Expect = 0.026
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 37451 cggggcccgacgagtccccgacctcg 37476
||||| ||||||||||||||||||||
Sbjct: 399 cggggaccgacgagtccccgacctcg 424
>ISRce1
Length = 1267
Score = 44.1 bits (22), Expect = 0.026
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 26938 cggcgtcatggacgaggacgat 26959
||||||||||||||||||||||
Sbjct: 85 cggcgtcatggacgaggacgat 106
>ISH10B
Length = 1629
Score = 44.1 bits (22), Expect = 0.026
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 37451 cggggcccgacgagtccccgacctcg 37476
||||| ||||||||||||||||||||
Sbjct: 378 cggggaccgacgagtccccgacctcg 403
>ISHha2
Length = 1339
Score = 42.1 bits (21), Expect = 0.10
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 14743 atccgcaagcgcgtcgaggag 14763
|||||||||||||||||||||
Sbjct: 1008 atccgcaagcgcgtcgaggag 1028
>ISMaa1
Length = 1650
Score = 42.1 bits (21), Expect = 0.10
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 61763 gctaccgcgtcggggtcggtg 61783
|||||||||||||||||||||
Sbjct: 763 gctaccgcgtcggggtcggtg 783
>ISAeme25
Length = 1385
Score = 40.1 bits (20), Expect = 0.41
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 48270 tcaaggtcaaggatgcgctg 48289
||||||||||||||||||||
Sbjct: 935 tcaaggtcaaggatgcgctg 954
>ISAzs22
Length = 1267
Score = 40.1 bits (20), Expect = 0.41
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 61512 cggcggccgaggcggtgttg 61531
||||||||||||||||||||
Sbjct: 350 cggcggccgaggcggtgttg 369
>ISAnsp12
Length = 2926
Score = 40.1 bits (20), Expect = 0.41
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 63518 cgtctcgtcggcgaggacga 63537
||||||||||||||||||||
Sbjct: 1637 cgtctcgtcggcgaggacga 1618
Score = 36.2 bits (18), Expect = 6.3
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 26674 tctcgccgagccgctcga 26691
||||||||||||||||||
Sbjct: 1735 tctcgccgagccgctcga 1752
>ISDge15
Length = 747
Score = 40.1 bits (20), Expect = 0.41
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 3640 cgtctcgacctcccgctgca 3659
||||||||||||||||||||
Sbjct: 510 cgtctcgacctcccgctgca 529
>ISBcen6
Length = 1335
Score = 40.1 bits (20), Expect = 0.41
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 30185 cccggcggatctcctcgacc 30204
||||||||||||||||||||
Sbjct: 591 cccggcggatctcctcgacc 572
>IS1110
Length = 1462
Score = 40.1 bits (20), Expect = 0.41
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 61822 cccggccaggtcggcgacga 61841
||||||||||||||||||||
Sbjct: 971 cccggccaggtcggcgacga 952
>ISTha3
Length = 2424
Score = 38.2 bits (19), Expect = 1.6
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 9773 gcgggctgtcgtgggcgac 9791
|||||||||||||||||||
Sbjct: 1486 gcgggctgtcgtgggcgac 1504
>TnAs3
Length = 18735
Score = 38.2 bits (19), Expect = 1.6
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 67860 cctcggtgacgctctcggc 67878
|||||||||||||||||||
Sbjct: 16834 cctcggtgacgctctcggc 16816
>TnAs2
Length = 8650
Score = 38.2 bits (19), Expect = 1.6
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 67860 cctcggtgacgctctcggc 67878
|||||||||||||||||||
Sbjct: 6746 cctcggtgacgctctcggc 6728
Score = 36.2 bits (18), Expect = 6.3
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 33768 gccgcctcgacgacctgc 33785
||||||||||||||||||
Sbjct: 6219 gccgcctcgacgacctgc 6236
>ISStu2
Length = 1760
Score = 38.2 bits (19), Expect = 1.6
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 31753 gcatcccggtcgggatgttgagc 31775
|||||||||||||| ||||||||
Sbjct: 554 gcatcccggtcggggtgttgagc 532
>ISNamo12
Length = 697
Score = 38.2 bits (19), Expect = 1.6
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 49575 gccatcgacacgggctccg 49593
|||||||||||||||||||
Sbjct: 508 gccatcgacacgggctccg 526
>ISHala2
Length = 1442
Score = 38.2 bits (19), Expect = 1.6
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 54705 ctcaccagctcgatctcgt 54723
|||||||||||||||||||
Sbjct: 870 ctcaccagctcgatctcgt 888
>ISRel15
Length = 2497
Score = 38.2 bits (19), Expect = 1.6
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 3159 cgcggaccttcgccagcacgacgtcca 3185
|||||| ||||||| ||||||||||||
Sbjct: 1369 cgcggaacttcgccggcacgacgtcca 1343
>ISShes11
Length = 7669
Score = 38.2 bits (19), Expect = 1.6
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 67860 cctcggtgacgctctcggc 67878
|||||||||||||||||||
Sbjct: 5768 cctcggtgacgctctcggc 5750
>ISRhru3
Length = 1382
Score = 38.2 bits (19), Expect = 1.6
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 30063 gatgcgggcggcgaaccgc 30081
|||||||||||||||||||
Sbjct: 618 gatgcgggcggcgaaccgc 600
>ISMno10
Length = 1749
Score = 38.2 bits (19), Expect = 1.6
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 62937 ctgctcgccgcgctggatggcgc 62959
||||||| |||||||||||||||
Sbjct: 737 ctgctcgacgcgctggatggcgc 759
>ISMpo6
Length = 1593
Score = 38.2 bits (19), Expect = 1.6
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 5997 gcgctacctcgccgccctcgacgccgc 6023
|||||| ||||||||||||||| ||||
Sbjct: 594 gcgctatctcgccgccctcgacaccgc 620
>ISMch8
Length = 1494
Score = 38.2 bits (19), Expect = 1.6
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 14742 gatccgcaagcgcgtcgaggagg 14764
||||||||||||| |||||||||
Sbjct: 1013 gatccgcaagcgcatcgaggagg 1035
>ISAar27
Length = 1669
Score = 38.2 bits (19), Expect = 1.6
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 69496 ctggtactcggcgaccttc 69514
|||||||||||||||||||
Sbjct: 1499 ctggtactcggcgaccttc 1481
>ISMav7
Length = 1691
Score = 38.2 bits (19), Expect = 1.6
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 32648 cgccgtcggtgtcgatcgc 32666
|||||||||||||||||||
Sbjct: 983 cgccgtcggtgtcgatcgc 965
>ISApr8
Length = 1667
Score = 38.2 bits (19), Expect = 1.6
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 63659 gccgagccggtcggcgtcg 63677
|||||||||||||||||||
Sbjct: 375 gccgagccggtcggcgtcg 357
>ISMex31
Length = 1091
Score = 38.2 bits (19), Expect = 1.6
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 59735 ggcggcctcggcgatcgcc 59753
|||||||||||||||||||
Sbjct: 296 ggcggcctcggcgatcgcc 278
>ISMex35
Length = 1294
Score = 38.2 bits (19), Expect = 1.6
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 7309 cggctggcccgcgatctcg 7327
|||||||||||||||||||
Sbjct: 442 cggctggcccgcgatctcg 424
>ISMex41
Length = 1048
Score = 38.2 bits (19), Expect = 1.6
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 21845 tcggccgccttgcgcagca 21863
|||||||||||||||||||
Sbjct: 929 tcggccgccttgcgcagca 911
>ISCARN74
Length = 1203
Score = 38.2 bits (19), Expect = 1.6
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 32438 cctcgagcaggtgacggaa 32456
|||||||||||||||||||
Sbjct: 410 cctcgagcaggtgacggaa 392
>ISAzo17
Length = 2095
Score = 38.2 bits (19), Expect = 1.6
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 15183 catcgtgccgatcagccgcgaga 15205
|||||||||||||||| ||||||
Sbjct: 1866 catcgtgccgatcagcggcgaga 1888
Score = 36.2 bits (18), Expect = 6.3
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 55757 ccgatctcgtcgacgatc 55774
||||||||||||||||||
Sbjct: 1688 ccgatctcgtcgacgatc 1671
>ISThsp9
Length = 6215
Score = 38.2 bits (19), Expect = 1.6
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 62999 cggtgcgctcggtcaggtg 63017
|||||||||||||||||||
Sbjct: 3643 cggtgcgctcggtcaggtg 3625
>ISDsh3
Length = 3472
Score = 38.2 bits (19), Expect = 1.6
Identities = 28/31 (90%)
Strand = Plus / Plus
Query: 20918 agcgccgcgtcgtcgtcgccctcctcgagcg 20948
|||||||||| ||||||||||| | ||||||
Sbjct: 1810 agcgccgcgttgtcgtcgccctgcgcgagcg 1840
>ISApr4
Length = 3691
Score = 38.2 bits (19), Expect = 1.6
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 5600 aggagatcgagcagacggtcggc 5622
|||||||||||| ||||||||||
Sbjct: 355 aggagatcgagcggacggtcggc 377
>ISNha4
Length = 1266
Score = 38.2 bits (19), Expect = 1.6
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 3046 cagggcgtcgatgacgtcg 3064
|||||||||||||||||||
Sbjct: 845 cagggcgtcgatgacgtcg 827
>ISMca3
Length = 1320
Score = 38.2 bits (19), Expect = 1.6
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 66681 ccgggaggccgtcgagctcgcca 66703
||||||||||||||| |||||||
Sbjct: 1134 ccgggaggccgtcgaactcgcca 1156
>ISGvi5
Length = 1287
Score = 38.2 bits (19), Expect = 1.6
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 62893 ggcaggcccgcgccgagca 62911
|||||||||||||||||||
Sbjct: 198 ggcaggcccgcgccgagca 216
>ISLxx3
Length = 2637
Score = 38.2 bits (19), Expect = 1.6
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 40948 cgcgccgtcgtcgacgagg 40966
|||||||||||||||||||
Sbjct: 1900 cgcgccgtcgtcgacgagg 1918
>ISPa42
Length = 16941
Score = 38.2 bits (19), Expect = 1.6
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 47690 gtcgccctcgtccatcggc 47708
|||||||||||||||||||
Sbjct: 10346 gtcgccctcgtccatcggc 10328
>TnXo19
Length = 18767
Score = 36.2 bits (18), Expect = 6.3
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 22664 gcggtgaggcgttcgacc 22681
||||||||||||||||||
Sbjct: 2280 gcggtgaggcgttcgacc 2263
Score = 36.2 bits (18), Expect = 6.3
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 52529 cgatctccaccctggcca 52546
||||||||||||||||||
Sbjct: 5983 cgatctccaccctggcca 5966
>ISNch1
Length = 1636
Score = 36.2 bits (18), Expect = 6.3
Identities = 24/26 (92%)
Strand = Plus / Plus
Query: 10296 tcgagtcgttgccgagcgtcatgccg 10321
||||||||| ||||||||||| ||||
Sbjct: 1042 tcgagtcgtggccgagcgtcacgccg 1067
>ISHti13
Length = 1403
Score = 36.2 bits (18), Expect = 6.3
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 39975 tcgcggacgccgacgacg 39992
||||||||||||||||||
Sbjct: 933 tcgcggacgccgacgacg 916
>ISMno24
Length = 2157
Score = 36.2 bits (18), Expect = 6.3
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 19335 tgttggcgatggcgacgc 19352
||||||||||||||||||
Sbjct: 434 tgttggcgatggcgacgc 451
>ISHth3
Length = 1472
Score = 36.2 bits (18), Expect = 6.3
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 31480 cgacgtcatcgctgagat 31497
||||||||||||||||||
Sbjct: 697 cgacgtcatcgctgagat 680
>ISBmu5
Length = 1447
Score = 36.2 bits (18), Expect = 6.3
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 25926 gacgtcctcggcgacgag 25943
||||||||||||||||||
Sbjct: 396 gacgtcctcggcgacgag 379
>ISAs22
Length = 1198
Score = 36.2 bits (18), Expect = 6.3
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 17738 ggctgctgcgcctcaccg 17755
||||||||||||||||||
Sbjct: 486 ggctgctgcgcctcaccg 503
>ISKpn27
Length = 1080
Score = 36.2 bits (18), Expect = 6.3
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 33709 cggcatagagctcgatga 33726
||||||||||||||||||
Sbjct: 630 cggcatagagctcgatga 613
>ISKpn25
Length = 8154
Score = 36.2 bits (18), Expect = 6.3
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 59026 catcgccttggccttgcc 59043
||||||||||||||||||
Sbjct: 5304 catcgccttggccttgcc 5287
>ISNpe25
Length = 1626
Score = 36.2 bits (18), Expect = 6.3
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 37459 gacgagtccccgacctcg 37476
||||||||||||||||||
Sbjct: 383 gacgagtccccgacctcg 400
>ISNpe24
Length = 1605
Score = 36.2 bits (18), Expect = 6.3
Identities = 24/26 (92%)
Strand = Plus / Plus
Query: 37451 cggggcccgacgagtccccgacctcg 37476
||||| |||| |||||||||||||||
Sbjct: 354 cggggaccgatgagtccccgacctcg 379
>ISUnCu7
Length = 2273
Score = 36.2 bits (18), Expect = 6.3
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 59389 gagctcggcgacgagcgc 59406
||||||||||||||||||
Sbjct: 1372 gagctcggcgacgagcgc 1389
>ISFsp17
Length = 1693
Score = 36.2 bits (18), Expect = 6.3
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 41096 gtcagcaccgaccggtgg 41113
||||||||||||||||||
Sbjct: 382 gtcagcaccgaccggtgg 365
>ISBibr1
Length = 1622
Score = 36.2 bits (18), Expect = 6.3
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 14956 cgccgcctcggcgtcacg 14973
||||||||||||||||||
Sbjct: 770 cgccgcctcggcgtcacg 753
>ISHla6
Length = 1069
Score = 36.2 bits (18), Expect = 6.3
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 35030 cttcctcaccgacctcga 35047
||||||||||||||||||
Sbjct: 358 cttcctcaccgacctcga 375
>ISPa40
Length = 6592
Score = 36.2 bits (18), Expect = 6.3
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 10707 gcatccccggacggcgcc 10724
||||||||||||||||||
Sbjct: 2441 gcatccccggacggcgcc 2424
>ISMesi1
Length = 1234
Score = 36.2 bits (18), Expect = 6.3
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 13022 taggcctccttgagggcc 13039
||||||||||||||||||
Sbjct: 377 taggcctccttgagggcc 360
>ISAzs30
Length = 2365
Score = 36.2 bits (18), Expect = 6.3
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 55757 ccgatctcgtcgacgatc 55774
||||||||||||||||||
Sbjct: 1967 ccgatctcgtcgacgatc 1950
>ISAzs29
Length = 3897
Score = 36.2 bits (18), Expect = 6.3
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 3770 ccgatctcctcgacgagg 3787
||||||||||||||||||
Sbjct: 2602 ccgatctcctcgacgagg 2619
>ISAzs24
Length = 1325
Score = 36.2 bits (18), Expect = 6.3
Identities = 27/30 (90%)
Strand = Plus / Plus
Query: 43470 gccccgtcgaccccacctcgcccatgccgc 43499
|||||||||| || ||| ||||||||||||
Sbjct: 449 gccccgtcgaacctaccgcgcccatgccgc 478
>ISAzs21
Length = 2598
Score = 36.2 bits (18), Expect = 6.3
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 50862 agatcgccaacaacgccgccga 50883
|||||| |||||||||||||||
Sbjct: 2311 agatcgacaacaacgccgccga 2332
>ISAzs17
Length = 7252
Score = 36.2 bits (18), Expect = 6.3
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 61573 gctcatcgcagcggcggc 61590
||||||||||||||||||
Sbjct: 875 gctcatcgcagcggcggc 892
>ISAzs14
Length = 1176
Score = 36.2 bits (18), Expect = 6.3
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 65660 gcggcgaggcgctcggcgaagt 65681
||||||||||| ||||||||||
Sbjct: 612 gcggcgaggcgttcggcgaagt 591
>ISAzs12
Length = 1196
Score = 36.2 bits (18), Expect = 6.3
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 38788 cgctgcggcgctccttcg 38805
||||||||||||||||||
Sbjct: 412 cgctgcggcgctccttcg 429
>ISAzs10
Length = 1307
Score = 36.2 bits (18), Expect = 6.3
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 14743 atccgcaagcgcgtcgaggagg 14764
|||||||||||| |||||||||
Sbjct: 1003 atccgcaagcgcatcgaggagg 1024
>ISAzs8
Length = 1373
Score = 36.2 bits (18), Expect = 6.3
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 36608 gagcacggcgcgcacggcgtcc 36629
|||| |||||||||||||||||
Sbjct: 1176 gagcgcggcgcgcacggcgtcc 1155
>ISAnsp14
Length = 1629
Score = 36.2 bits (18), Expect = 6.3
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 45811 gtgggacgacatcgacgc 45828
||||||||||||||||||
Sbjct: 1352 gtgggacgacatcgacgc 1369
>ISCsa9
Length = 2475
Score = 36.2 bits (18), Expect = 6.3
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 56277 cttctgcaggcagtgttg 56294
||||||||||||||||||
Sbjct: 485 cttctgcaggcagtgttg 468
>ISRel24
Length = 2837
Score = 36.2 bits (18), Expect = 6.3
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 23037 caccgacgagggcatcac 23054
||||||||||||||||||
Sbjct: 2645 caccgacgagggcatcac 2662
>ISRel19
Length = 2798
Score = 36.2 bits (18), Expect = 6.3
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 3618 ggtgatcctggatccggg 3635
||||||||||||||||||
Sbjct: 2378 ggtgatcctggatccggg 2361
>ISSgr2
Length = 873
Score = 36.2 bits (18), Expect = 6.3
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 50403 tcgtcgacctgctcgccg 50420
||||||||||||||||||
Sbjct: 333 tcgtcgacctgctcgccg 350
>ISGeob3
Length = 970
Score = 36.2 bits (18), Expect = 6.3
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 50326 ggtgcccgtcggggtcgc 50343
||||||||||||||||||
Sbjct: 599 ggtgcccgtcggggtcgc 582
>ISPse1
Length = 1653
Score = 36.2 bits (18), Expect = 6.3
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 67493 gcgacggcgtccaggtcgtcgc 67514
|||||||||| |||||||||||
Sbjct: 951 gcgacggcgtgcaggtcgtcgc 930
>ISHwa15
Length = 1845
Score = 36.2 bits (18), Expect = 6.3
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 35492 gtgatgtcgatcggcacgtcga 35513
||||||||||||| ||||||||
Sbjct: 868 gtgatgtcgatcgccacgtcga 847
>ISStsp2
Length = 1752
Score = 36.2 bits (18), Expect = 6.3
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 31752 ggcatcccggtcgggatg 31769
||||||||||||||||||
Sbjct: 548 ggcatcccggtcgggatg 531
>ISRop2
Length = 2171
Score = 36.2 bits (18), Expect = 6.3
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 69131 tcggccaggacggcgcgg 69148
||||||||||||||||||
Sbjct: 1985 tcggccaggacggcgcgg 1968
>ISMno15
Length = 1561
Score = 36.2 bits (18), Expect = 6.3
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 58395 ggcggcgaggtagtgggcgacg 58416
||||||||||||| ||||||||
Sbjct: 588 ggcggcgaggtagcgggcgacg 567
>ISMtsp8
Length = 2371
Score = 36.2 bits (18), Expect = 6.3
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 2873 gcggcagcgcccgcagct 2890
||||||||||||||||||
Sbjct: 1042 gcggcagcgcccgcagct 1025
>ISPfr12
Length = 1350
Score = 36.2 bits (18), Expect = 6.3
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 29959 ccgacgtcgacgacggtg 29976
||||||||||||||||||
Sbjct: 239 ccgacgtcgacgacggtg 256
>ISAau5
Length = 3989
Score = 36.2 bits (18), Expect = 6.3
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 60645 gcggcggcgacgagttcc 60662
||||||||||||||||||
Sbjct: 438 gcggcggcgacgagttcc 421
Score = 36.2 bits (18), Expect = 6.3
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 3205 tggccgccccgacgcggc 3222
||||||||||||||||||
Sbjct: 3152 tggccgccccgacgcggc 3169
>ISArsp3
Length = 1596
Score = 36.2 bits (18), Expect = 6.3
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 30397 cggaccagcccgtgggcg 30414
||||||||||||||||||
Sbjct: 648 cggaccagcccgtgggcg 631
>ISHwa3
Length = 940
Score = 36.2 bits (18), Expect = 6.3
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 44286 gtcgcaggccgtcctcga 44303
||||||||||||||||||
Sbjct: 521 gtcgcaggccgtcctcga 538
>ISMgi4
Length = 1772
Score = 36.2 bits (18), Expect = 6.3
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 51677 tgcgcaccgccttctcgggcat 51698
|||||||||||| |||||||||
Sbjct: 713 tgcgcaccgcctgctcgggcat 734
>ISAtu6
Length = 2798
Score = 36.2 bits (18), Expect = 6.3
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 3618 ggtgatcctggatccggg 3635
||||||||||||||||||
Sbjct: 2378 ggtgatcctggatccggg 2361
>ISNosp1
Length = 1678
Score = 36.2 bits (18), Expect = 6.3
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 46661 gccggcaagcaggtgctc 46678
||||||||||||||||||
Sbjct: 637 gccggcaagcaggtgctc 654
>ISMex13
Length = 2359
Score = 36.2 bits (18), Expect = 6.3
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 68888 gaggtcgtcgaggtcgcg 68905
||||||||||||||||||
Sbjct: 933 gaggtcgtcgaggtcgcg 916
>ISAnsp4
Length = 2195
Score = 36.2 bits (18), Expect = 6.3
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 7508 gagccgcagacgaccgcggtgc 7529
|||||||||||||||| |||||
Sbjct: 1411 gagccgcagacgaccgaggtgc 1390
>ISAau1
Length = 1257
Score = 36.2 bits (18), Expect = 6.3
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 63585 cggaccttcgcgatgacc 63602
||||||||||||||||||
Sbjct: 124 cggaccttcgcgatgacc 107
>ISMex22
Length = 3864
Score = 36.2 bits (18), Expect = 6.3
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 8629 atcggccggcggccgtcc 8646
||||||||||||||||||
Sbjct: 2679 atcggccggcggccgtcc 2662
>ISCARN58
Length = 2436
Score = 36.2 bits (18), Expect = 6.3
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 48646 cgaccgtcgttcacctct 48663
||||||||||||||||||
Sbjct: 547 cgaccgtcgttcacctct 564
>ISThsp2
Length = 2644
Score = 36.2 bits (18), Expect = 6.3
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 61859 tcgagcaaggcggtggtc 61876
||||||||||||||||||
Sbjct: 2287 tcgagcaaggcggtggtc 2270
>ISAnsp3
Length = 2518
Score = 36.2 bits (18), Expect = 6.3
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 12574 atcgcgagctgcgtcgcg 12591
||||||||||||||||||
Sbjct: 744 atcgcgagctgcgtcgcg 727
>ISAli18
Length = 1752
Score = 36.2 bits (18), Expect = 6.3
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 34543 ccatcgtcgtcgacctcg 34560
||||||||||||||||||
Sbjct: 602 ccatcgtcgtcgacctcg 619
>ISApr6
Length = 2479
Score = 36.2 bits (18), Expect = 6.3
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 32906 cggcagcactggtgtcggcgct 32927
|||| |||||||||||||||||
Sbjct: 444 cggcggcactggtgtcggcgct 465
>ISMno2
Length = 1419
Score = 36.2 bits (18), Expect = 6.3
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 15493 gagaccggcttgcgcatcgagg 15514
||||||||| ||||||||||||
Sbjct: 735 gagaccggcgtgcgcatcgagg 756
>ISVch3
Length = 2593
Score = 36.2 bits (18), Expect = 6.3
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 43338 cgtctgcgacggtggcgt 43355
||||||||||||||||||
Sbjct: 2422 cgtctgcgacggtggcgt 2405
>ISDds5
Length = 845
Score = 36.2 bits (18), Expect = 6.3
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 69132 cggccaggacggcgcggagccg 69153
||||||||||| ||||||||||
Sbjct: 809 cggccaggacgacgcggagccg 788
>ISBad1
Length = 2525
Score = 36.2 bits (18), Expect = 6.3
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 64564 cccggcagcgcggccacg 64581
||||||||||||||||||
Sbjct: 688 cccggcagcgcggccacg 671
Score = 36.2 bits (18), Expect = 6.3
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 53934 tgaacaggtcggccagca 53951
||||||||||||||||||
Sbjct: 1813 tgaacaggtcggccagca 1796
>ISTesp2
Length = 1397
Score = 36.2 bits (18), Expect = 6.3
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 47293 cgaccacggcggcgatcc 47310
||||||||||||||||||
Sbjct: 787 cgaccacggcggcgatcc 770
>ISPre3
Length = 2957
Score = 36.2 bits (18), Expect = 6.3
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 50862 agatcgccaacaacgccgccga 50883
|||||| |||||||||||||||
Sbjct: 2083 agatcgacaacaacgccgccga 2104
>ISSpal1
Length = 1002
Score = 36.2 bits (18), Expect = 6.3
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 38789 gctgcggcgctccttcgg 38806
||||||||||||||||||
Sbjct: 239 gctgcggcgctccttcgg 222
>ISPst6
Length = 1371
Score = 36.2 bits (18), Expect = 6.3
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 2602 tgccagcgccaccgcggc 2619
||||||||||||||||||
Sbjct: 1032 tgccagcgccaccgcggc 1015
>ISMca5
Length = 1390
Score = 36.2 bits (18), Expect = 6.3
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 51336 agccggcatgacggcgct 51353
||||||||||||||||||
Sbjct: 80 agccggcatgacggcgct 97
>ISMca2
Length = 1308
Score = 36.2 bits (18), Expect = 6.3
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 3445 ggcgtggatggcgcggat 3462
||||||||||||||||||
Sbjct: 558 ggcgtggatggcgcggat 541
>ISPosp1
Length = 1529
Score = 36.2 bits (18), Expect = 6.3
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 48790 ctgtttcgcgtgtcagcg 48807
||||||||||||||||||
Sbjct: 498 ctgtttcgcgtgtcagcg 481
>ISAzo5
Length = 1478
Score = 36.2 bits (18), Expect = 6.3
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 30879 cgatctcgcgcgccacga 30896
||||||||||||||||||
Sbjct: 957 cgatctcgcgcgccacga 940
>ISPpa5
Length = 2829
Score = 36.2 bits (18), Expect = 6.3
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 36080 aacgcgaagatctcggcc 36097
||||||||||||||||||
Sbjct: 965 aacgcgaagatctcggcc 982
>ISAzvi2
Length = 1396
Score = 36.2 bits (18), Expect = 6.3
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 24480 cagctcgcgcgcccagta 24497
||||||||||||||||||
Sbjct: 277 cagctcgcgcgcccagta 260
>ISGsu6
Length = 1975
Score = 36.2 bits (18), Expect = 6.3
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 33459 ccggtgccgctgggaccc 33476
||||||||||||||||||
Sbjct: 1449 ccggtgccgctgggaccc 1432
>ISHla10
Length = 1444
Score = 36.2 bits (18), Expect = 6.3
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 54707 caccagctcgatctcgtc 54724
||||||||||||||||||
Sbjct: 874 caccagctcgatctcgtc 891
>ISRsp2
Length = 2623
Score = 36.2 bits (18), Expect = 6.3
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 68392 ggcctgcatctggtcgag 68409
||||||||||||||||||
Sbjct: 1776 ggcctgcatctggtcgag 1759
>ISH8D
Length = 1402
Score = 36.2 bits (18), Expect = 6.3
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 39975 tcgcggacgccgacgacg 39992
||||||||||||||||||
Sbjct: 932 tcgcggacgccgacgacg 915
>ISH8C
Length = 1403
Score = 36.2 bits (18), Expect = 6.3
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 39975 tcgcggacgccgacgacg 39992
||||||||||||||||||
Sbjct: 933 tcgcggacgccgacgacg 916
>ISH8B
Length = 1403
Score = 36.2 bits (18), Expect = 6.3
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 39975 tcgcggacgccgacgacg 39992
||||||||||||||||||
Sbjct: 933 tcgcggacgccgacgacg 916
>ISH8A
Length = 1402
Score = 36.2 bits (18), Expect = 6.3
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 39975 tcgcggacgccgacgacg 39992
||||||||||||||||||
Sbjct: 932 tcgcggacgccgacgacg 915
>ISH8
Length = 1402
Score = 36.2 bits (18), Expect = 6.3
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 39975 tcgcggacgccgacgacg 39992
||||||||||||||||||
Sbjct: 932 tcgcggacgccgacgacg 915
>ISH26-1
Length = 1705
Score = 36.2 bits (18), Expect = 6.3
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 39975 tcgcggacgccgacgacg 39992
||||||||||||||||||
Sbjct: 460 tcgcggacgccgacgacg 477
>ISH26
Length = 1384
Score = 36.2 bits (18), Expect = 6.3
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 39975 tcgcggacgccgacgacg 39992
||||||||||||||||||
Sbjct: 925 tcgcggacgccgacgacg 908
>ISAav1
Length = 2532
Score = 36.2 bits (18), Expect = 6.3
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 46715 aacaacatctcgtgggcc 46732
||||||||||||||||||
Sbjct: 643 aacaacatctcgtgggcc 626
>IS931
Length = 1477
Score = 36.2 bits (18), Expect = 6.3
Identities = 24/26 (92%)
Strand = Plus / Minus
Query: 62232 gagcgccttctggctggccgggatga 62257
||||||| ||||||||||| ||||||
Sbjct: 653 gagcgccctctggctggcctggatga 628
>IS2001
Length = 1406
Score = 36.2 bits (18), Expect = 6.3
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 55810 cgcgcgaccggcgtggacgagc 55831
||||||| ||||||||||||||
Sbjct: 575 cgcgcgatcggcgtggacgagc 596
>IS1549
Length = 1640
Score = 36.2 bits (18), Expect = 6.3
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 12019 ttgccctcgaaggcctcc 12036
||||||||||||||||||
Sbjct: 783 ttgccctcgaaggcctcc 766
>ISHwa14
Length = 1070
Score = 36.2 bits (18), Expect = 6.3
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 46554 tcatcgagcaggccgccg 46571
||||||||||||||||||
Sbjct: 405 tcatcgagcaggccgccg 422
>IS1372
Length = 1304
Score = 36.2 bits (18), Expect = 6.3
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 2363 acgccggcgaacgcgacg 2380
||||||||||||||||||
Sbjct: 221 acgccggcgaacgcgacg 238
>IS1131
Length = 2773
Score = 36.2 bits (18), Expect = 6.3
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 3618 ggtgatcctggatccggg 3635
||||||||||||||||||
Sbjct: 2356 ggtgatcctggatccggg 2339
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_16_length_70180_cov_77.1177_ID_5200
(70,180 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISTesp2 | ISL3 | Terrabacter sp. | 92 | 1e-16 | |
| ISArsp6 | Tn3 | Arthrobacter sp. | 60 | 4e-07 | |
| ISTesp3 | IS3 | IS51 | Terrabacter sp. | 52 | 1e-04 |
| ISPfr10 | IS3 | IS407 | Propionibacterium freudenreichii | 46 | 0.006 |
| ISHwa21 | IS200/IS605 | IS1341 | Haloquadratum walsbyi | 42 | 0.097 |
| ISShes11 | Tn3 | Shewanella sp. | 42 | 0.097 | |
| ISMdi12 | IS110 | IS1111 | Methylobacterium dichloromethanicum | 42 | 0.097 |
| ISThsp3 | IS66 | Thiomonas sp. | 42 | 0.097 | |
| IS1557 | ISL3 | Mycobacterium tuberculosis | 42 | 0.097 | |
| ISMno16 | IS110 | IS1111 | Methylobacterium nodulans | 40 | 0.38 |
| ISPfr19 | IS481 | Propionibacterium freudenreichii | 40 | 0.38 | |
| ISLxc1 | IS21 | Leifsonia xyli | 40 | 0.38 | |
| ISPen2 | IS3 | IS51 | Pseudomonas entomophila | 40 | 0.38 |
| ISAzvi8 | IS701 | Azotobacter vinelandii | 40 | 0.38 | |
| ISMyma8 | IS3 | IS407 | Mycobacterium marinum | 38 | 1.5 |
| ISAzs17 | Tn3 | Azospirillum sp. | 38 | 1.5 | |
| ISAar39 | ISL3 | Arthrobacter arilaitensis | 38 | 1.5 | |
| ISAnsp4 | IS21 | Anaeromyxobacter sp. | 38 | 1.5 | |
| ISH15 | IS6 | Haloarcula marismortui | 38 | 1.5 | |
| ISPa1328 | IS256 | Pseudomonas aeruginosa | 38 | 1.5 | |
| IS1601 | IS256 | - | Mycobacterium avium | 38 | 1.5 |
| IS1096 | ISL3 | - | Mycobacterium smegmatis | 38 | 1.5 |
| ISMyma11 | ISNCY | ISDol1 | Mycobacterium marinum | 36 | 6.0 |
| ISTha3 | IS91 | Thauera sp. | 36 | 6.0 | |
| TnXo19 | Tn3 | Xanthomonas oryzae | 36 | 6.0 | |
| ISAve3 | IS3 | IS2 | Aeromonas veronii | 36 | 6.0 |
| TnAs3 | Tn3 | Aeromonas salmonicida | 36 | 6.0 | |
| ISMno21 | IS630 | Methylobacterium nodulans | 36 | 6.0 | |
| ISBdi2 | IS1380 | Bradyrhizobium diazoefficiens | 36 | 6.0 | |
| TnAs2 | Tn3 | Aeromonas salmonicida | 36 | 6.0 | |
| ISAs17 | IS3 | IS2 | Aeromonas salmonicida | 36 | 6.0 |
| ISHli1 | IS5 | ISH1 | Halohasta litchfieldiae | 36 | 6.0 |
| ISSm4 | ISL3 | Serratia marcescens | 36 | 6.0 | |
| ISAcas3 | ISKra4 | ISKra4 | Acaryochloris sp. | 36 | 6.0 |
| ISUnCu7 | ISKra4 | ISAzba1 | Uncultured bacterium | 36 | 6.0 |
| ISFsp17 | ISKra4 | ISKra4 | Frankia sp. | 36 | 6.0 |
| ISGsi1 | IS256 | IS1249 | Gordonia sihwensis | 36 | 6.0 |
| ISTni2 | IS481 | Thioalkalivibrio nitratireducens | 36 | 6.0 | |
| ISNph9 | IS200/IS605 | IS1341 | Natronomonas pharaonis | 36 | 6.0 |
| ISMrh1 | IS256 | Mycobacterium rhodesiae | 36 | 6.0 | |
| ISPa43 | Tn3 | Pseudomonas aeruginosa | 36 | 6.0 | |
| ISAzs23 | IS3 | IS3 | Azospirillum sp. | 36 | 6.0 |
| ISAzs14 | IS630 | Azospirillum sp. | 36 | 6.0 | |
| ISCef8 | IS5 | IS427 | Corynebacterium efficiens | 36 | 6.0 |
| ISStsp4 | IS5 | ISL2 | Streptomyces sp. | 36 | 6.0 |
| ISGeob2 | IS5 | ISL2 | Geodermatophilus obscurus | 36 | 6.0 |
| ISMno8 | IS1182 | Methylobacterium nodulans | 36 | 6.0 | |
| IS1087B | IS3 | IS2 | Ralstonia metallidurans | 36 | 6.0 |
| ISMch6 | IS110 | Methylobacterium chloromethanicum | 36 | 6.0 | |
| ISPfr7 | ISL3 | Propionibacterium freudenreichii | 36 | 6.0 | |
| ISAar34 | ISL3 | Arthrobacter arilaitensis | 36 | 6.0 | |
| ISMaa1 | IS1380 | Marine actinobacterium | 36 | 6.0 | |
| ISRssp8 | IS1380 | Roseovarius sp. | 36 | 6.0 | |
| ISAde5 | IS256 | Anaeromyxobacter dehalogenans | 36 | 6.0 | |
| ISAnsp11 | IS3 | IS3 | Anaeromyxobacter sp. | 36 | 6.0 |
| ISMdi5 | IS3 | IS3 | Methylobacterium dichloromethanicum | 36 | 6.0 |
| ISMex41 | IS630 | Methylobacterium extorquens | 36 | 6.0 | |
| ISMex17 | IS110 | Methylobacterium extorquens | 36 | 6.0 | |
| ISAnsp5 | IS21 | Anaeromyxobacter sp. | 36 | 6.0 | |
| ISStma5 | IS3 | IS3 | Stenotrophomonas maltophilia | 36 | 6.0 |
| ISMex22 | Tn3 | Methylobacterium extorquens | 36 | 6.0 | |
| ISThsp9 | Tn3 | Thiomonas sp. | 36 | 6.0 | |
| ISMysp6 | IS481 | Mycobacterium sp. | 36 | 6.0 | |
| ISCARN22 | IS66 | Metagenomic data from CARNOULES | 36 | 6.0 | |
| ISAli18 | ISL3 | Azospirillum lipoferum | 36 | 6.0 | |
| ISRssp5 | IS5 | IS903 | Roseovarius sp. | 36 | 6.0 |
| ISRme4 | IS21 | Cupriavidus metallidurans | 36 | 6.0 | |
| ISFal3B | IS5 | IS1031 | Frankia alni | 36 | 6.0 |
| ISFal3A | IS5 | IS1031 | Frankia alni | 36 | 6.0 |
| ISAzo6 | IS1634 | Azoarcus sp. | 36 | 6.0 | |
| ISAzo4 | IS21 | Azoarcus sp. | 36 | 6.0 | |
| ISLxx5 | IS30 | Leifsonia xyli | 36 | 6.0 | |
| ISPpu13 | IS66 | Pseudomonas putida | 36 | 6.0 | |
| ISRso7 | IS256 | - | Ralstonia solanacearum | 36 | 6.0 |
| ISRm14 | IS66 | - | Sinorhizobium meliloti | 36 | 6.0 |
| ISPpu7 | IS21 | - | Pseudomonas putida | 36 | 6.0 |
| ISCre1 | IS256 | IS1249 | Corynebacterium resistens | 36 | 6.0 |
| ISBj1 | IS1380 | - | Bradyrhizobium japonicum | 36 | 6.0 |
| IS1648 | IS5 | IS427 | Streptomyces coelicolor | 36 | 6.0 |
| IS1629 | ISAs1 | - | Streptomyces sp. | 36 | 6.0 |
| IS1491 | IS21 | - | Pseudomonas alcaligenes | 36 | 6.0 |
| IS2606 | IS256 | - | Mycobacterium ulcerans | 36 | 6.0 |
| IS1121 | IS481 | - | Clavibacter michiganensis | 36 | 6.0 |
| IS1087 | IS3 | IS2 | Ralstonia eutropha | 36 | 6.0 |
>ISTesp2
Length = 1397
Score = 91.7 bits (46), Expect = 1e-16
Identities = 67/74 (90%)
Strand = Plus / Plus
Query: 4 gccatgctcagcctcggcggtcaccgccccgtcctgcccggccggaactgacccacggat 63
|||||||||| ||||||||| ||||| |||||||| || |||||||| ||||||||||||
Sbjct: 1324 gccatgctcaacctcggcggccaccgacccgtcctcccaggccggaaatgacccacggat 1383
Query: 64 cagtcagtagagcc 77
||||||| ||||||
Sbjct: 1384 cagtcaggagagcc 1397
>ISArsp6
Length = 26712
Score = 60.0 bits (30), Expect = 4e-07
Identities = 39/42 (92%)
Strand = Plus / Plus
Query: 14229 cgccagggccggcgcgtcgttgacgccgtcaccgaccatggc 14270
|||||||||||| |||||||| |||||||| |||||||||||
Sbjct: 4119 cgccagggccggggcgtcgttcacgccgtccccgaccatggc 4160
Score = 36.2 bits (18), Expect = 6.0
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 2594 gcggccaccgcctcctcc 2611
||||||||||||||||||
Sbjct: 4667 gcggccaccgcctcctcc 4650
>ISTesp3
Length = 1373
Score = 52.0 bits (26), Expect = 1e-04
Identities = 62/74 (83%)
Strand = Plus / Plus
Query: 639 gctacgtcggggacatcccctatctgccgatcgccggcggcacgaacctctctctggcca 698
|||||||||| |||||| |||| || ||| |||| | ||| |||||||| | ||||| |
Sbjct: 841 gctacgtcggcgacatcacctacctcccgctcgcggacgggacgaacctgtacctggcga 900
Query: 699 ccgtgatcgactgc 712
||||||||||||||
Sbjct: 901 ccgtgatcgactgc 914
>ISPfr10
Length = 1247
Score = 46.1 bits (23), Expect = 0.006
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 32036 ctggagaaggctgcgctcgaggagctg 32062
|||||||||||||||||| ||||||||
Sbjct: 324 ctggagaaggctgcgctcaaggagctg 350
>ISHwa21
Length = 1590
Score = 42.1 bits (21), Expect = 0.097
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 35981 gcgacggcgacggcgacggcg 36001
|||||||||||||||||||||
Sbjct: 1295 gcgacggcgacggcgacggcg 1315
Score = 42.1 bits (21), Expect = 0.097
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 35981 gcgacggcgacggcgacggcg 36001
|||||||||||||||||||||
Sbjct: 1301 gcgacggcgacggcgacggcg 1321
Score = 42.1 bits (21), Expect = 0.097
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 35981 gcgacggcgacggcgacggcg 36001
|||||||||||||||||||||
Sbjct: 1307 gcgacggcgacggcgacggcg 1327
Score = 40.1 bits (20), Expect = 0.38
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 35982 cgacggcgacggcgacggcg 36001
||||||||||||||||||||
Sbjct: 1290 cgacggcgacggcgacggcg 1309
Score = 38.2 bits (19), Expect = 1.5
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 35981 gcgacggcgacggcgacgg 35999
|||||||||||||||||||
Sbjct: 1313 gcgacggcgacggcgacgg 1331
>ISShes11
Length = 7669
Score = 42.1 bits (21), Expect = 0.097
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 14228 gcgccagggccggcgcgtcgttgacgccgtcaccgaccatg 14268
|||||| |||||| || ||||||| ||| ||||||||||||
Sbjct: 2690 gcgccaaggccggggcatcgttgatgccatcaccgaccatg 2650
Score = 38.2 bits (19), Expect = 1.5
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 14165 ccacgtcagccgtctcgatggcg 14187
|||||||||| ||||||||||||
Sbjct: 2756 ccacgtcagcggtctcgatggcg 2734
Score = 36.2 bits (18), Expect = 6.0
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 47254 ttcgccgagctcgagcgcgccc 47275
||||||||| ||||||||||||
Sbjct: 4518 ttcgccgagttcgagcgcgccc 4539
>ISMdi12
Length = 1371
Score = 42.1 bits (21), Expect = 0.097
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 25422 ggccggcgccgaggccattgccgag 25446
||||| |||||||||||||||||||
Sbjct: 351 ggccgacgccgaggccattgccgag 375
>ISThsp3
Length = 2455
Score = 42.1 bits (21), Expect = 0.097
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 56722 gcgcctcctgcgcgatggcgc 56742
|||||||||||||||||||||
Sbjct: 1920 gcgcctcctgcgcgatggcgc 1900
>IS1557
Length = 1509
Score = 42.1 bits (21), Expect = 0.097
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 54 acccacggatcagtcagtagagccggaaa 82
|||||| ||||||||||||||||| ||||
Sbjct: 1462 acccacagatcagtcagtagagcccgaaa 1490
>ISMno16
Length = 1404
Score = 40.1 bits (20), Expect = 0.38
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 59739 tgagctggcgcagcaccgcc 59758
||||||||||||||||||||
Sbjct: 945 tgagctggcgcagcaccgcc 926
>ISPfr19
Length = 1089
Score = 40.1 bits (20), Expect = 0.38
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 68935 cgacggcgatcccggccgcg 68954
||||||||||||||||||||
Sbjct: 795 cgacggcgatcccggccgcg 776
>ISLxc1
Length = 3533
Score = 40.1 bits (20), Expect = 0.38
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 30308 tcgacggcggccgcggcggc 30327
||||||||||||||||||||
Sbjct: 2789 tcgacggcggccgcggcggc 2770
>ISPen2
Length = 1232
Score = 40.1 bits (20), Expect = 0.38
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 46471 caggcgctgggcgacctcgacgac 46494
||||||||||||||||||| ||||
Sbjct: 159 caggcgctgggcgacctcggcgac 136
>ISAzvi8
Length = 1482
Score = 40.1 bits (20), Expect = 0.38
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 17015 ggggtcgaggtgtgccgcca 17034
||||||||||||||||||||
Sbjct: 220 ggggtcgaggtgtgccgcca 201
>ISMyma8
Length = 1247
Score = 38.2 bits (19), Expect = 1.5
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 31535 cgggccgcggtgatggcgc 31553
|||||||||||||||||||
Sbjct: 562 cgggccgcggtgatggcgc 580
>ISAzs17
Length = 7252
Score = 38.2 bits (19), Expect = 1.5
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 47341 gacgcggagcaggtcgtcgacgc 47363
|||| ||||||||||||||||||
Sbjct: 2750 gacggggagcaggtcgtcgacgc 2728
>ISAar39
Length = 1433
Score = 38.2 bits (19), Expect = 1.5
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 39626 ccctcctcgacaccggcgg 39644
|||||||||||||||||||
Sbjct: 1378 ccctcctcgacaccggcgg 1396
>ISAnsp4
Length = 2195
Score = 38.2 bits (19), Expect = 1.5
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 57200 ctcgaggcgcacctcgccg 57218
|||||||||||||||||||
Sbjct: 897 ctcgaggcgcacctcgccg 915
Score = 36.2 bits (18), Expect = 6.0
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 38695 ctcgacggcggcgcggcc 38712
||||||||||||||||||
Sbjct: 1741 ctcgacggcggcgcggcc 1724
>ISH15
Length = 697
Score = 38.2 bits (19), Expect = 1.5
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 34959 cacggcgtcgtcgacgtcg 34977
|||||||||||||||||||
Sbjct: 470 cacggcgtcgtcgacgtcg 452
>ISPa1328
Length = 1328
Score = 38.2 bits (19), Expect = 1.5
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 16504 cggtgccgaggtgtcaccc 16522
|||||||||||||||||||
Sbjct: 473 cggtgccgaggtgtcaccc 491
>IS1601
Length = 1417
Score = 38.2 bits (19), Expect = 1.5
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 58391 gcctcgcgcagctcggcgtcggcgtcg 58417
|||||||||||| |||||| |||||||
Sbjct: 850 gcctcgcgcagcccggcgtgggcgtcg 824
>IS1096
Length = 2259
Score = 38.2 bits (19), Expect = 1.5
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 15324 gtcctcgacgacaccgtcg 15342
|||||||||||||||||||
Sbjct: 1791 gtcctcgacgacaccgtcg 1809
>ISMyma11
Length = 1584
Score = 36.2 bits (18), Expect = 6.0
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 32077 cgaccgcgtcctcgccac 32094
||||||||||||||||||
Sbjct: 452 cgaccgcgtcctcgccac 435
>ISTha3
Length = 2424
Score = 36.2 bits (18), Expect = 6.0
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 28334 gcgcgggttcgcggcgagctcg 28355
||||||||| ||||||||||||
Sbjct: 1052 gcgcgggttggcggcgagctcg 1073
>TnXo19
Length = 18767
Score = 36.2 bits (18), Expect = 6.0
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 53213 cacgctgcggctgatcct 53230
||||||||||||||||||
Sbjct: 13147 cacgctgcggctgatcct 13164
>ISAve3
Length = 1333
Score = 36.2 bits (18), Expect = 6.0
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 42145 cgatgatgacgaccatct 42162
||||||||||||||||||
Sbjct: 551 cgatgatgacgaccatct 534
>TnAs3
Length = 18735
Score = 36.2 bits (18), Expect = 6.0
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 66013 aggccgagggccgcagcg 66030
||||||||||||||||||
Sbjct: 14088 aggccgagggccgcagcg 14105
Score = 36.2 bits (18), Expect = 6.0
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 47254 ttcgccgagctcgagcgcgccc 47275
||||||||| ||||||||||||
Sbjct: 15512 ttcgccgagttcgagcgcgccc 15533
>ISMno21
Length = 1162
Score = 36.2 bits (18), Expect = 6.0
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 59016 cgagcgcggcggcctgcg 59033
||||||||||||||||||
Sbjct: 241 cgagcgcggcggcctgcg 224
>ISBdi2
Length = 1622
Score = 36.2 bits (18), Expect = 6.0
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 15372 gacgaggtcgccgacgac 15389
||||||||||||||||||
Sbjct: 923 gacgaggtcgccgacgac 940
>TnAs2
Length = 8650
Score = 36.2 bits (18), Expect = 6.0
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 43060 cgtcgagcacataggtcg 43077
||||||||||||||||||
Sbjct: 7856 cgtcgagcacataggtcg 7839
>ISAs17
Length = 1333
Score = 36.2 bits (18), Expect = 6.0
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 42145 cgatgatgacgaccatct 42162
||||||||||||||||||
Sbjct: 551 cgatgatgacgaccatct 534
>ISHli1
Length = 926
Score = 36.2 bits (18), Expect = 6.0
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 31980 tcctgcgggcgacctgcg 31997
||||||||||||||||||
Sbjct: 586 tcctgcgggcgacctgcg 569
>ISSm4
Length = 9109
Score = 36.2 bits (18), Expect = 6.0
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 50687 ccgcaccgaccggctgcc 50704
||||||||||||||||||
Sbjct: 5040 ccgcaccgaccggctgcc 5057
>ISAcas3
Length = 1484
Score = 36.2 bits (18), Expect = 6.0
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 17448 acgtcggccacatccggcgcaa 17469
||||||||||||||||| ||||
Sbjct: 300 acgtcggccacatccggggcaa 279
>ISUnCu7
Length = 2273
Score = 36.2 bits (18), Expect = 6.0
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 57610 caagctgcggatcgccgc 57627
||||||||||||||||||
Sbjct: 864 caagctgcggatcgccgc 881
>ISFsp17
Length = 1693
Score = 36.2 bits (18), Expect = 6.0
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 34911 ttcgacgacgcgatcgacgcgg 34932
|||||||||||| |||||||||
Sbjct: 584 ttcgacgacgcggtcgacgcgg 605
Score = 36.2 bits (18), Expect = 6.0
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 43570 ccggagcctggccgacgacatc 43591
|||||||||||||| |||||||
Sbjct: 658 ccggagcctggccgccgacatc 679
>ISGsi1
Length = 1310
Score = 36.2 bits (18), Expect = 6.0
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 43900 cgacggcacccacgtcgt 43917
||||||||||||||||||
Sbjct: 435 cgacggcacccacgtcgt 452
>ISTni2
Length = 3451
Score = 36.2 bits (18), Expect = 6.0
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 37598 gttcgctgtggtgagtgcggtg 37619
|||| |||||||||||||||||
Sbjct: 1791 gttcactgtggtgagtgcggtg 1770
>ISNph9
Length = 1462
Score = 36.2 bits (18), Expect = 6.0
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 63300 catcgtcgtctacgtcga 63317
||||||||||||||||||
Sbjct: 244 catcgtcgtctacgtcga 227
>ISMrh1
Length = 1472
Score = 36.2 bits (18), Expect = 6.0
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 28702 caaggcggtctcgaagatcgtc 28723
|||||||||| |||||||||||
Sbjct: 1091 caaggcggtcgcgaagatcgtc 1112
>ISPa43
Length = 19903
Score = 36.2 bits (18), Expect = 6.0
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 14412 gcgcacgcccagctcgtg 14429
||||||||||||||||||
Sbjct: 12381 gcgcacgcccagctcgtg 12364
>ISAzs23
Length = 1596
Score = 36.2 bits (18), Expect = 6.0
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 48523 ttccgccggggcgagatc 48540
||||||||||||||||||
Sbjct: 779 ttccgccggggcgagatc 762
>ISAzs14
Length = 1176
Score = 36.2 bits (18), Expect = 6.0
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 6756 cccgaggcgagcgccgtg 6773
||||||||||||||||||
Sbjct: 629 cccgaggcgagcgccgtg 646
>ISCef8
Length = 966
Score = 36.2 bits (18), Expect = 6.0
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 17610 ccaggtcctcgttctcggcgcc 17631
|||||||||||| |||||||||
Sbjct: 254 ccaggtcctcgtcctcggcgcc 275
>ISStsp4
Length = 902
Score = 36.2 bits (18), Expect = 6.0
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 40426 gatgccgaggccggcggcgagc 40447
|||||||| |||||||||||||
Sbjct: 314 gatgccgaagccggcggcgagc 293
>ISGeob2
Length = 968
Score = 36.2 bits (18), Expect = 6.0
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 8930 gcgcctgccgcaagcagctgct 8951
||||||||||||| ||||||||
Sbjct: 787 gcgcctgccgcaaccagctgct 808
>ISMno8
Length = 1466
Score = 36.2 bits (18), Expect = 6.0
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 65681 cagcggcatccatctcgg 65698
||||||||||||||||||
Sbjct: 612 cagcggcatccatctcgg 595
>IS1087B
Length = 1330
Score = 36.2 bits (18), Expect = 6.0
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 14124 gagcgcggtcggcacgtc 14141
||||||||||||||||||
Sbjct: 1185 gagcgcggtcggcacgtc 1168
>ISMch6
Length = 1379
Score = 36.2 bits (18), Expect = 6.0
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 17460 tccggcgcaagctcggcgacga 17481
||||||||||||||| ||||||
Sbjct: 981 tccggcgcaagctcgtcgacga 960
>ISPfr7
Length = 1423
Score = 36.2 bits (18), Expect = 6.0
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 12886 tcgatgacctgggcctgg 12903
||||||||||||||||||
Sbjct: 159 tcgatgacctgggcctgg 176
>ISAar34
Length = 1438
Score = 36.2 bits (18), Expect = 6.0
Identities = 24/26 (92%)
Strand = Plus / Plus
Query: 52 tgacccacggatcagtcagtagagcc 77
||||||||||| |||||||||||||
Sbjct: 1413 tgacccacggaagagtcagtagagcc 1438
>ISMaa1
Length = 1650
Score = 36.2 bits (18), Expect = 6.0
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 30487 cacgtccgccagctcgat 30504
||||||||||||||||||
Sbjct: 442 cacgtccgccagctcgat 459
>ISRssp8
Length = 1614
Score = 36.2 bits (18), Expect = 6.0
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 54145 gggccggcgggccgggcg 54162
||||||||||||||||||
Sbjct: 716 gggccggcgggccgggcg 699
>ISAde5
Length = 1270
Score = 36.2 bits (18), Expect = 6.0
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 41255 acctcgaggtcgacggcg 41272
||||||||||||||||||
Sbjct: 291 acctcgaggtcgacggcg 274
Score = 36.2 bits (18), Expect = 6.0
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 40430 ccgaggccggcggcgagc 40447
||||||||||||||||||
Sbjct: 958 ccgaggccggcggcgagc 941
>ISAnsp11
Length = 1510
Score = 36.2 bits (18), Expect = 6.0
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 47255 tcgccgagctcgagcgcg 47272
||||||||||||||||||
Sbjct: 347 tcgccgagctcgagcgcg 364
>ISMdi5
Length = 1279
Score = 36.2 bits (18), Expect = 6.0
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 25004 cgtcgcgctccatgcgcg 25021
||||||||||||||||||
Sbjct: 345 cgtcgcgctccatgcgcg 328
>ISMex41
Length = 1048
Score = 36.2 bits (18), Expect = 6.0
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 64808 gccaccggcacggtggca 64825
||||||||||||||||||
Sbjct: 224 gccaccggcacggtggca 241
>ISMex17
Length = 1132
Score = 36.2 bits (18), Expect = 6.0
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 14573 gctccacaccctcggtcg 14590
||||||||||||||||||
Sbjct: 291 gctccacaccctcggtcg 274
>ISAnsp5
Length = 2192
Score = 36.2 bits (18), Expect = 6.0
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 37024 tcgcgctcgtcgcggtcg 37041
||||||||||||||||||
Sbjct: 991 tcgcgctcgtcgcggtcg 974
>ISStma5
Length = 1228
Score = 36.2 bits (18), Expect = 6.0
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 15914 gcggcgaggccagcgcgg 15931
||||||||||||||||||
Sbjct: 645 gcggcgaggccagcgcgg 662
>ISMex22
Length = 3864
Score = 36.2 bits (18), Expect = 6.0
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 3242 cgtcctcggcctcggtgc 3259
||||||||||||||||||
Sbjct: 1357 cgtcctcggcctcggtgc 1340
>ISThsp9
Length = 6215
Score = 36.2 bits (18), Expect = 6.0
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 5584 ctggcccgcgcctggggc 5601
||||||||||||||||||
Sbjct: 3844 ctggcccgcgcctggggc 3861
>ISMysp6
Length = 1077
Score = 36.2 bits (18), Expect = 6.0
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 30428 ccgttgcggcccggagga 30445
||||||||||||||||||
Sbjct: 354 ccgttgcggcccggagga 371
>ISCARN22
Length = 2674
Score = 36.2 bits (18), Expect = 6.0
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 3246 ctcggcctcggtgccggc 3263
||||||||||||||||||
Sbjct: 1049 ctcggcctcggtgccggc 1066
>ISAli18
Length = 1752
Score = 36.2 bits (18), Expect = 6.0
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 52606 tcgaggaggtcgtcgcgc 52623
||||||||||||||||||
Sbjct: 992 tcgaggaggtcgtcgcgc 1009
>ISRssp5
Length = 1047
Score = 36.2 bits (18), Expect = 6.0
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 41229 ggtcctcctcgggctcccgctc 41250
||||||||||||||| ||||||
Sbjct: 249 ggtcctcctcgggctgccgctc 270
>ISRme4
Length = 2469
Score = 36.2 bits (18), Expect = 6.0
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 3793 ccaccttcgagcaggcgg 3810
||||||||||||||||||
Sbjct: 1519 ccaccttcgagcaggcgg 1502
>ISFal3B
Length = 1130
Score = 36.2 bits (18), Expect = 6.0
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 60806 tggtcgcctcggtcgaggtcga 60827
||||||||| ||||||||||||
Sbjct: 40 tggtcgcctgggtcgaggtcga 61
>ISFal3A
Length = 1087
Score = 36.2 bits (18), Expect = 6.0
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 60806 tggtcgcctcggtcgaggtcga 60827
||||||||| ||||||||||||
Sbjct: 40 tggtcgcctgggtcgaggtcga 61
>ISAzo6
Length = 1925
Score = 36.2 bits (18), Expect = 6.0
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 5318 ccacgatccgcgccgagg 5335
||||||||||||||||||
Sbjct: 729 ccacgatccgcgccgagg 746
>ISAzo4
Length = 2757
Score = 36.2 bits (18), Expect = 6.0
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 48366 cgcggtcgtcgagcagct 48383
||||||||||||||||||
Sbjct: 2387 cgcggtcgtcgagcagct 2370
>ISLxx5
Length = 1495
Score = 36.2 bits (18), Expect = 6.0
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 18458 acaccggcgacggcatgagcgc 18479
||||||||| ||||||||||||
Sbjct: 227 acaccggcggcggcatgagcgc 248
>ISPpu13
Length = 2370
Score = 36.2 bits (18), Expect = 6.0
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 28679 gagtcagcaatggcaggc 28696
||||||||||||||||||
Sbjct: 1616 gagtcagcaatggcaggc 1599
>ISRso7
Length = 1344
Score = 36.2 bits (18), Expect = 6.0
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 48643 gcgcaacggctcgggcgc 48660
||||||||||||||||||
Sbjct: 269 gcgcaacggctcgggcgc 286
>ISRm14
Length = 2695
Score = 36.2 bits (18), Expect = 6.0
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 5003 gcgccggtggtcgaccat 5020
||||||||||||||||||
Sbjct: 1711 gcgccggtggtcgaccat 1728
>ISPpu7
Length = 2598
Score = 36.2 bits (18), Expect = 6.0
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 45671 gtgaccctggcgctgctc 45688
||||||||||||||||||
Sbjct: 466 gtgaccctggcgctgctc 483
>ISCre1
Length = 1385
Score = 36.2 bits (18), Expect = 6.0
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 42453 acgtggtcgagcgatgccgcca 42474
||||||||||||| ||||||||
Sbjct: 532 acgtggtcgagcgttgccgcca 511
>ISBj1
Length = 2071
Score = 36.2 bits (18), Expect = 6.0
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 15372 gacgaggtcgccgacgac 15389
||||||||||||||||||
Sbjct: 1253 gacgaggtcgccgacgac 1270
>IS1648
Length = 969
Score = 36.2 bits (18), Expect = 6.0
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 12596 gccctcctgctcacccgcggcc 12617
|||||||||||||||| |||||
Sbjct: 534 gccctcctgctcacccccggcc 555
>IS1629
Length = 1462
Score = 36.2 bits (18), Expect = 6.0
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 33881 cccgtcagctccacgccc 33898
||||||||||||||||||
Sbjct: 945 cccgtcagctccacgccc 962
>IS1491
Length = 2481
Score = 36.2 bits (18), Expect = 6.0
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 45671 gtgaccctggcgctgctc 45688
||||||||||||||||||
Sbjct: 396 gtgaccctggcgctgctc 413
>IS2606
Length = 1404
Score = 36.2 bits (18), Expect = 6.0
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 68978 caggcccgcgaggccggc 68995
||||||||||||||||||
Sbjct: 182 caggcccgcgaggccggc 199
>IS1121
Length = 1068
Score = 36.2 bits (18), Expect = 6.0
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 11623 ccaccacccgccgcacga 11640
||||||||||||||||||
Sbjct: 160 ccaccacccgccgcacga 143
>IS1087
Length = 1330
Score = 36.2 bits (18), Expect = 6.0
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 14124 gagcgcggtcggcacgtc 14141
||||||||||||||||||
Sbjct: 1189 gagcgcggtcggcacgtc 1172
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_17_length_64518_cov_95.9347_ID_5202
(64,518 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISMrh1 | IS256 | Mycobacterium rhodesiae | 46 | 0.006 | |
| ISAzo12 | IS21 | Azoarcus sp. | 44 | 0.023 | |
| ISMtsp8 | IS21 | Methylobacterium sp. | 42 | 0.089 | |
| ISSst2 | IS1595 | ISNha5 | Sagittula stellata | 42 | 0.089 |
| TnAs3 | Tn3 | Aeromonas salmonicida | 40 | 0.35 | |
| ISAeme10 | IS1595 | ISPna2 | Aeromonas media | 40 | 0.35 |
| ISMno14 | IS110 | IS1111 | Methylobacterium nodulans | 40 | 0.35 |
| ISAau5 | ISNCY | Arthrobacter aurescens | 40 | 0.35 | |
| ISAeh1 | IS66 | Alkalilimnicola ehrlichei | 40 | 0.35 | |
| ISFsp10 | IS66 | ISBst12 | Frankia sp. | 40 | 0.35 |
| ISMysp5 | IS481 | Mycobacterium sp. | 40 | 0.35 | |
| ISMdi14B | IS110 | IS1111 | Methylobacterium dichloromethanicum DM4 | 38 | 1.4 |
| ISMau1 | IS5 | ISL2 | Micromonospora aurantiaca | 38 | 1.4 |
| ISGeob2 | IS5 | ISL2 | Geodermatophilus obscurus | 38 | 1.4 |
| ISYen4 | IS1182 | Yersinia enterocolitica | 38 | 1.4 | |
| ISMtsp5 | IS3 | IS2 | Methylobacterium sp. | 38 | 1.4 |
| ISAzba3 | IS5 | IS903 | Azospirillum brasilense | 38 | 1.4 |
| ISMno6 | IS6 | Methylobacterium nodulans | 38 | 1.4 | |
| ISMno5 | ISL3 | Methylobacterium nodulans | 38 | 1.4 | |
| ISArsp6 | Tn3 | Arthrobacter sp. | 38 | 1.4 | |
| ISAau2 | IS21 | Arthrobacter aurescens | 38 | 1.4 | |
| ISMdi14 | IS110 | IS1111 | Methylobacterium dichloromethanicum | 38 | 1.4 |
| ISMex24 | ISL3 | Methylobacterium extorquens | 38 | 1.4 | |
| ISSav5 | IS481 | Streptomyces avermitilis | 38 | 1.4 | |
| ISRosp4 | IS66 | Roseobacter sp. | 38 | 1.4 | |
| ISDpr4 | IS66 | Delta proteobacterium | 38 | 1.4 | |
| ISFsp11 | IS66 | ISBst12 | Frankia sp. | 38 | 1.4 |
| ISMsm6 | IS1634 | Mycobacterium smegmatis | 38 | 1.4 | |
| ISRpa3 | IS481 | Rhodopseudomonas palustris | 38 | 1.4 | |
| ISGka4 | IS66 | ISBst12 | Geobacillus kaustophilus | 38 | 1.4 |
| ISMyca1 | IS1634 | Mycobacterium canettii | 38 | 1.4 | |
| ISDra1 | IS4 | IS10 | Deinococcus radiodurans | 38 | 1.4 |
| IS801 | IS91 | - | Pseudomonas syringae | 38 | 1.4 |
| ISSme3 | IS66 | Sinorhizobium medicae | 38 | 1.4 | |
| ISMex45 | IS200/IS605 | IS1341 | Methylobacterium extorquens | 36 | 5.5 |
| ISSoc14 | IS200/IS605 | IS1341 | Synechococcus sp | 36 | 5.5 |
| TnAs2 | Tn3 | Aeromonas salmonicida | 36 | 5.5 | |
| ISCysp24 | ISKra4 | ISMich2 | Cyanothece sp. | 36 | 5.5 |
| ISMva4 | IS256 | Mycobacterium vanbaalenii | 36 | 5.5 | |
| ISRjo4 | IS256 | Rhodococcus jostii | 36 | 5.5 | |
| ISHvo3 | IS5 | ISH1 | Haloferax volcanii | 36 | 5.5 |
| ISAzs25 | IS1380 | Azospirillum sp. | 36 | 5.5 | |
| ISRel19 | IS66 | Rhizobium etli | 36 | 5.5 | |
| ISSyth2 | IS1182 | Symbiobacterium thermophilum | 36 | 5.5 | |
| ISNml3 | IS1182 | Nakamurella multipartita | 36 | 5.5 | |
| ISVsp3 | IS66 | Verrucomicrobium spinosum | 36 | 5.5 | |
| ISBuce2 | IS5 | Burkholderia cepacia | 36 | 5.5 | |
| ISApr13 | IS5 | Alpha proteobacterium | 36 | 5.5 | |
| ISRssp11 | IS5 | Roseovarius sp. | 36 | 5.5 | |
| ISNha8 | IS5 | Nitrobacter hamburgensis | 36 | 5.5 | |
| ISApr12 | IS5 | Alpha proteobacterium | 36 | 5.5 | |
| ISNisp7 | IS5 | Nitrobacter sp. | 36 | 5.5 | |
| ISCte5 | IS5 | Comamonas testosteroni | 36 | 5.5 | |
| ISRpa9 | IS5 | IS5 | Rhodopseudomonas palustris | 36 | 5.5 |
| ISScl2 | ISAzo13 | Streptomyces clavuligerus | 36 | 5.5 | |
| ISRop2 | ISAzo13 | Rhodococcus opacus | 36 | 5.5 | |
| ISMpo10 | Tn3 | Methylobacterium populi | 36 | 5.5 | |
| ISPfr10 | IS3 | IS407 | Propionibacterium freudenreichii | 36 | 5.5 |
| ISPfr1 | ISL3 | Propionibacterium freudenreichii | 36 | 5.5 | |
| ISHwa3 | IS5 | ISH1 | Haloquadratum walsbyi | 36 | 5.5 |
| IS693 | IS66 | Rhizobium sp. | 36 | 5.5 | |
| ISTro1 | IS1380 | Thiocapsa roseopersicina | 36 | 5.5 | |
| ISMpo3 | IS1380 | Methylobacterium populi | 36 | 5.5 | |
| ISAar14 | ISL3 | Arthrobacter arilaitensis | 36 | 5.5 | |
| ISAar13 | ISL3 | Arthrobacter arilaitensis | 36 | 5.5 | |
| ISApr10 | IS256 | Alpha proteobacterium | 36 | 5.5 | |
| ISApr9 | IS1380 | Alpha proteobacterium | 36 | 5.5 | |
| ISAnsp12 | IS66 | Anaeromyxobacter sp. | 36 | 5.5 | |
| ISMdi1 | IS630 | Methylobacterium dichloromethanicum | 36 | 5.5 | |
| ISAnsp5 | IS21 | Anaeromyxobacter sp. | 36 | 5.5 | |
| ISStma5 | IS3 | IS3 | Stenotrophomonas maltophilia | 36 | 5.5 |
| ISMex22 | Tn3 | Methylobacterium extorquens | 36 | 5.5 | |
| ISThsp18 | IS1182 | Thiomonas sp. | 36 | 5.5 | |
| ISThsp11 | IS3 | IS3 | Thiomonas sp. | 36 | 5.5 |
| ISAzo31 | IS5 | IS5 | Azoarcus sp. | 36 | 5.5 |
| ISCARN53 | ISNCY | IS1202 | Metagenomic data from CARNOULES | 36 | 5.5 |
| ISCARN40 | IS256 | Metagenomic data from CARNOULES | 36 | 5.5 | |
| ISVei5 | IS5 | IS5 | Verminephrobacter eiseniae | 36 | 5.5 |
| ISThsp5 | IS21 | Thiomonas sp. | 36 | 5.5 | |
| ISCARN29 | IS1595 | ISPna2 | Metagenomic data from CARNOULES | 36 | 5.5 |
| ISCARN23 | IS1634 | Metagenomic data from CARNOULES | 36 | 5.5 | |
| ISNha5 | IS1595 | ISNha5 | Nitrobacter hamburgensis | 36 | 5.5 |
| ISRta2 | IS256 | Ralstonia taiwanensis | 36 | 5.5 | |
| ISSpu2 | IS630 | Shewanella putrefaciens | 36 | 5.5 | |
| ISEc20 | IS110 | Escherichia coli | 36 | 5.5 | |
| ISChy4 | IS21 | Carboxydothermus hydrogenoformans | 36 | 5.5 | |
| ISPme1 | IS1380 | Paracoccus methylutens | 36 | 5.5 | |
| ISFal2 | IS6 | Frankia alni | 36 | 5.5 | |
| ISMva1 | IS1595 | ISSod11 | Mycobacterium vanbaalenii | 36 | 5.5 |
| ISLxx3 | IS21 | Leifsonia xyli | 36 | 5.5 | |
| ISRle1 | IS110 | IS1111 | Rhizobium leguminosarum | 36 | 5.5 |
| ISPsy14 | IS21 | Pseudomonas syringae | 36 | 5.5 | |
| ISSfl4 | IS110 | - | Shigella flexneri | 36 | 5.5 |
| ISH27-2 | ISH3 | - | Halobacterium salinarum | 36 | 5.5 |
| IS4811 | IS5 | IS1031 | Streptomyces lividans | 36 | 5.5 |
| IS406 | IS256 | - | Burkholderia cepacia | 36 | 5.5 |
>ISMrh1
Length = 1472
Score = 46.1 bits (23), Expect = 0.006
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 41948 agctgatcgacgccgcgcaggcc 41970
|||||||||||||||||||||||
Sbjct: 1276 agctgatcgacgccgcgcaggcc 1298
>ISAzo12
Length = 3075
Score = 44.1 bits (22), Expect = 0.023
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 27337 tacgtcgagttcgtccgcgacc 27358
||||||||||||||||||||||
Sbjct: 798 tacgtcgagttcgtccgcgacc 819
>ISMtsp8
Length = 2371
Score = 42.1 bits (21), Expect = 0.089
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 44554 tcttcgccgacgagccgggcg 44574
|||||||||||||||||||||
Sbjct: 542 tcttcgccgacgagccgggcg 562
>ISSst2
Length = 3454
Score = 42.1 bits (21), Expect = 0.089
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 5439 accaagcaccgggccaagaag 5459
|||||||||||||||||||||
Sbjct: 3192 accaagcaccgggccaagaag 3172
>TnAs3
Length = 18735
Score = 40.1 bits (20), Expect = 0.35
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 46933 tgccgccctcgcgctgaccggctt 46956
|||||| |||||||||||||||||
Sbjct: 3921 tgccgcgctcgcgctgaccggctt 3944
>ISAeme10
Length = 1032
Score = 40.1 bits (20), Expect = 0.35
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 2771 ctgcgcggcctcggcctggc 2790
||||||||||||||||||||
Sbjct: 235 ctgcgcggcctcggcctggc 216
>ISMno14
Length = 1428
Score = 40.1 bits (20), Expect = 0.35
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 57922 tcacgaaggcggtcgcggtg 57941
||||||||||||||||||||
Sbjct: 831 tcacgaaggcggtcgcggtg 812
>ISAau5
Length = 3989
Score = 40.1 bits (20), Expect = 0.35
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 22989 cacgacgacgggcccggcggcggg 23012
|||||||||||| |||||||||||
Sbjct: 2621 cacgacgacggggccggcggcggg 2598
>ISAeh1
Length = 2320
Score = 40.1 bits (20), Expect = 0.35
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 45982 cgcagcgccaccggccggcc 46001
||||||||||||||||||||
Sbjct: 244 cgcagcgccaccggccggcc 263
>ISFsp10
Length = 1713
Score = 40.1 bits (20), Expect = 0.35
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 2166 ccagatccggccgccgtcgatcgtctcg 2193
|||||||| |||| ||||||||||||||
Sbjct: 982 ccagatcccgccggcgtcgatcgtctcg 955
>ISMysp5
Length = 1117
Score = 40.1 bits (20), Expect = 0.35
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 61967 agggaggttggtcagtccggtgac 61990
||||||||||||||||| ||||||
Sbjct: 1107 agggaggttggtcagtcgggtgac 1084
>ISMdi14B
Length = 1315
Score = 38.2 bits (19), Expect = 1.4
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 47675 gacccgctggccgaccagc 47693
|||||||||||||||||||
Sbjct: 486 gacccgctggccgaccagc 468
>ISMau1
Length = 914
Score = 38.2 bits (19), Expect = 1.4
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 42342 cggcgaggaggtcgacggc 42360
|||||||||||||||||||
Sbjct: 367 cggcgaggaggtcgacggc 349
>ISGeob2
Length = 968
Score = 38.2 bits (19), Expect = 1.4
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 41522 cggtggcccgggcggcggc 41540
|||||||||||||||||||
Sbjct: 660 cggtggcccgggcggcggc 642
>ISYen4
Length = 1597
Score = 38.2 bits (19), Expect = 1.4
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 61226 tggtcggcgggcgggtact 61244
|||||||||||||||||||
Sbjct: 488 tggtcggcgggcgggtact 506
>ISMtsp5
Length = 1347
Score = 38.2 bits (19), Expect = 1.4
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 2927 ggtcaggtcggtgccccac 2945
|||||||||||||||||||
Sbjct: 821 ggtcaggtcggtgccccac 803
>ISAzba3
Length = 1112
Score = 38.2 bits (19), Expect = 1.4
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 31020 gatgaccgcgcaggcgatg 31038
|||||||||||||||||||
Sbjct: 1010 gatgaccgcgcaggcgatg 992
>ISMno6
Length = 816
Score = 38.2 bits (19), Expect = 1.4
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 20649 tccgagccgaggcgttcgc 20667
|||||||||||||||||||
Sbjct: 713 tccgagccgaggcgttcgc 731
>ISMno5
Length = 1728
Score = 38.2 bits (19), Expect = 1.4
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 15018 tcgtcgaggcgggctgcga 15036
|||||||||||||||||||
Sbjct: 1259 tcgtcgaggcgggctgcga 1241
>ISArsp6
Length = 26712
Score = 38.2 bits (19), Expect = 1.4
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 52898 tcgggatcctgatggtctc 52916
|||||||||||||||||||
Sbjct: 2604 tcgggatcctgatggtctc 2586
Score = 38.2 bits (19), Expect = 1.4
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 47698 cggcggagcggtggcgtgg 47716
|||||||||||||||||||
Sbjct: 7102 cggcggagcggtggcgtgg 7084
Score = 36.2 bits (18), Expect = 5.5
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 30397 ctcgtcaacgtcggcgac 30414
||||||||||||||||||
Sbjct: 25879 ctcgtcaacgtcggcgac 25896
>ISAau2
Length = 2222
Score = 38.2 bits (19), Expect = 1.4
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 29395 ccggcatcgtcggcaccgc 29413
|||||||||||||||||||
Sbjct: 322 ccggcatcgtcggcaccgc 304
>ISMdi14
Length = 1316
Score = 38.2 bits (19), Expect = 1.4
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 47675 gacccgctggccgaccagc 47693
|||||||||||||||||||
Sbjct: 487 gacccgctggccgaccagc 469
>ISMex24
Length = 1677
Score = 38.2 bits (19), Expect = 1.4
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 15045 gctcgccgaagatcttccgcttg 15067
||||| |||||||||||||||||
Sbjct: 354 gctcggcgaagatcttccgcttg 332
>ISSav5
Length = 1953
Score = 38.2 bits (19), Expect = 1.4
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 37454 gcgcggtggccaggtcggt 37472
|||||||||||||||||||
Sbjct: 928 gcgcggtggccaggtcggt 910
Score = 36.2 bits (18), Expect = 5.5
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 50638 gcccggcccgccggaccc 50655
||||||||||||||||||
Sbjct: 1366 gcccggcccgccggaccc 1383
>ISRosp4
Length = 2709
Score = 38.2 bits (19), Expect = 1.4
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 262 tcgtgctgcaggtgacgggcgat 284
|||||||||||||| ||||||||
Sbjct: 446 tcgtgctgcaggtgccgggcgat 468
>ISDpr4
Length = 2431
Score = 38.2 bits (19), Expect = 1.4
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 23122 gggccgtgcaggtggccgagcgc 23144
||||| |||||||||||||||||
Sbjct: 1505 gggccatgcaggtggccgagcgc 1527
>ISFsp11
Length = 1836
Score = 38.2 bits (19), Expect = 1.4
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 600 gaactcgccgtcgggcagg 618
|||||||||||||||||||
Sbjct: 175 gaactcgccgtcgggcagg 193
>ISMsm6
Length = 1765
Score = 38.2 bits (19), Expect = 1.4
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 21772 ggtgggcctcgatggcctcgcgg 21794
|||||||||||||||| ||||||
Sbjct: 1542 ggtgggcctcgatggcatcgcgg 1520
>ISRpa3
Length = 1261
Score = 38.2 bits (19), Expect = 1.4
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1756 gcctcggcgaggtcgcgca 1774
|||||||||||||||||||
Sbjct: 885 gcctcggcgaggtcgcgca 867
>ISGka4
Length = 1635
Score = 38.2 bits (19), Expect = 1.4
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 11932 cggagaaacggccgggagg 11950
|||||||||||||||||||
Sbjct: 350 cggagaaacggccgggagg 368
>ISMyca1
Length = 1968
Score = 38.2 bits (19), Expect = 1.4
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 25664 gccgtcgagggcggcctcg 25682
|||||||||||||||||||
Sbjct: 1387 gccgtcgagggcggcctcg 1369
>ISDra1
Length = 1207
Score = 38.2 bits (19), Expect = 1.4
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 32062 agagacgagcagaccgcac 32080
|||||||||||||||||||
Sbjct: 299 agagacgagcagaccgcac 317
>IS801
Length = 1512
Score = 38.2 bits (19), Expect = 1.4
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 807 cgccccgaagatcccgacgcgca 829
||||||||| |||||||||||||
Sbjct: 576 cgccccgaaaatcccgacgcgca 554
>ISSme3
Length = 3149
Score = 38.2 bits (19), Expect = 1.4
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 37170 gctctccggctcgatgacc 37188
|||||||||||||||||||
Sbjct: 1283 gctctccggctcgatgacc 1265
>ISMex45
Length = 1270
Score = 36.2 bits (18), Expect = 5.5
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 42523 gacgtcgcggtcgagctc 42540
||||||||||||||||||
Sbjct: 1146 gacgtcgcggtcgagctc 1129
>ISSoc14
Length = 1370
Score = 36.2 bits (18), Expect = 5.5
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 40271 gtccacctcgacggcgtc 40288
||||||||||||||||||
Sbjct: 350 gtccacctcgacggcgtc 367
>TnAs2
Length = 8650
Score = 36.2 bits (18), Expect = 5.5
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 1065 cgggccgccgccggcgaa 1082
||||||||||||||||||
Sbjct: 5553 cgggccgccgccggcgaa 5570
>ISCysp24
Length = 1170
Score = 36.2 bits (18), Expect = 5.5
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 54469 gcccaccttgtagaggtt 54486
||||||||||||||||||
Sbjct: 825 gcccaccttgtagaggtt 808
>ISMva4
Length = 1458
Score = 36.2 bits (18), Expect = 5.5
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 27274 gccgagctcgacgcgttc 27291
||||||||||||||||||
Sbjct: 996 gccgagctcgacgcgttc 1013
>ISRjo4
Length = 1458
Score = 36.2 bits (18), Expect = 5.5
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 41948 agctgatcgacgccgcgcaggc 41969
|||||||||||||||| |||||
Sbjct: 1253 agctgatcgacgccgcccaggc 1274
>ISHvo3
Length = 941
Score = 36.2 bits (18), Expect = 5.5
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 14269 cacggcgaagccgagcga 14286
||||||||||||||||||
Sbjct: 824 cacggcgaagccgagcga 807
>ISAzs25
Length = 1614
Score = 36.2 bits (18), Expect = 5.5
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 35892 cggcctcgacccgcgcga 35909
||||||||||||||||||
Sbjct: 1036 cggcctcgacccgcgcga 1019
>ISRel19
Length = 2798
Score = 36.2 bits (18), Expect = 5.5
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 15937 ggagcgcgtgccggcgtcggtc 15958
||||| ||||||||||||||||
Sbjct: 1312 ggagcacgtgccggcgtcggtc 1333
>ISSyth2
Length = 1687
Score = 36.2 bits (18), Expect = 5.5
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 63252 gcttcgtggtggagcgag 63269
||||||||||||||||||
Sbjct: 1273 gcttcgtggtggagcgag 1256
>ISNml3
Length = 1798
Score = 36.2 bits (18), Expect = 5.5
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 43794 gcggtgatcgaccgggtc 43811
||||||||||||||||||
Sbjct: 1268 gcggtgatcgaccgggtc 1251
>ISVsp3
Length = 2446
Score = 36.2 bits (18), Expect = 5.5
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 51416 gtgggtggcgcactcgcc 51433
||||||||||||||||||
Sbjct: 1658 gtgggtggcgcactcgcc 1675
>ISBuce2
Length = 1345
Score = 36.2 bits (18), Expect = 5.5
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 51487 cgagcaccgcggagcgcc 51504
||||||||||||||||||
Sbjct: 998 cgagcaccgcggagcgcc 981
>ISApr13
Length = 1556
Score = 36.2 bits (18), Expect = 5.5
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 63937 cgtagcccttgtcggcgc 63954
||||||||||||||||||
Sbjct: 885 cgtagcccttgtcggcgc 868
>ISRssp11
Length = 1356
Score = 36.2 bits (18), Expect = 5.5
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 21653 gagccggtcgaactcgac 21670
||||||||||||||||||
Sbjct: 226 gagccggtcgaactcgac 209
>ISNha8
Length = 1288
Score = 36.2 bits (18), Expect = 5.5
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 32199 ggccggcggctcgccaga 32216
||||||||||||||||||
Sbjct: 586 ggccggcggctcgccaga 569
>ISApr12
Length = 1524
Score = 36.2 bits (18), Expect = 5.5
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 63937 cgtagcccttgtcggcgc 63954
||||||||||||||||||
Sbjct: 891 cgtagcccttgtcggcgc 874
>ISNisp7
Length = 1276
Score = 36.2 bits (18), Expect = 5.5
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 32199 ggccggcggctcgccaga 32216
||||||||||||||||||
Sbjct: 585 ggccggcggctcgccaga 568
>ISCte5
Length = 1321
Score = 36.2 bits (18), Expect = 5.5
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 63937 cgtagcccttgtcggcgc 63954
||||||||||||||||||
Sbjct: 872 cgtagcccttgtcggcgc 855
>ISRpa9
Length = 1539
Score = 36.2 bits (18), Expect = 5.5
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 16192 cgtgctcgccgcggccggcttc 16213
|||||||||||| |||||||||
Sbjct: 1393 cgtgctcgccgcagccggcttc 1414
>ISScl2
Length = 1819
Score = 36.2 bits (18), Expect = 5.5
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 57270 tcgcgcagctcgtcggcgacgg 57291
||||||||| ||||||||||||
Sbjct: 511 tcgcgcagcacgtcggcgacgg 490
>ISRop2
Length = 2171
Score = 36.2 bits (18), Expect = 5.5
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 3638 gagtcggcgagcatcgcg 3655
||||||||||||||||||
Sbjct: 1346 gagtcggcgagcatcgcg 1329
>ISMpo10
Length = 4911
Score = 36.2 bits (18), Expect = 5.5
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 6400 caccgccgtgaggatcgc 6417
||||||||||||||||||
Sbjct: 3738 caccgccgtgaggatcgc 3721
>ISPfr10
Length = 1247
Score = 36.2 bits (18), Expect = 5.5
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 18081 cgtcctgtcgcccgtggt 18098
||||||||||||||||||
Sbjct: 41 cgtcctgtcgcccgtggt 58
>ISPfr1
Length = 1427
Score = 36.2 bits (18), Expect = 5.5
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 40900 ctcgacgagctcggcctg 40917
||||||||||||||||||
Sbjct: 162 ctcgacgagctcggcctg 179
>ISHwa3
Length = 940
Score = 36.2 bits (18), Expect = 5.5
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 14269 cacggcgaagccgagcga 14286
||||||||||||||||||
Sbjct: 824 cacggcgaagccgagcga 807
>IS693
Length = 3078
Score = 36.2 bits (18), Expect = 5.5
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 2187 cgtctcgagctggttgat 2204
||||||||||||||||||
Sbjct: 2427 cgtctcgagctggttgat 2410
>ISTro1
Length = 1735
Score = 36.2 bits (18), Expect = 5.5
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 34910 ccgaagacgccacccatg 34927
||||||||||||||||||
Sbjct: 574 ccgaagacgccacccatg 591
>ISMpo3
Length = 1617
Score = 36.2 bits (18), Expect = 5.5
Identities = 24/26 (92%)
Strand = Plus / Minus
Query: 22912 gcggggtcggcgagcaggtcgtcgag 22937
|||||||||||| |||||| ||||||
Sbjct: 409 gcggggtcggcgcgcaggtggtcgag 384
>ISAar14
Length = 1416
Score = 36.2 bits (18), Expect = 5.5
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 56994 gcgtcgatgacgcggtag 57011
||||||||||||||||||
Sbjct: 180 gcgtcgatgacgcggtag 163
>ISAar13
Length = 1416
Score = 36.2 bits (18), Expect = 5.5
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 56994 gcgtcgatgacgcggtag 57011
||||||||||||||||||
Sbjct: 180 gcgtcgatgacgcggtag 163
>ISApr10
Length = 1366
Score = 36.2 bits (18), Expect = 5.5
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 30249 cggtgagggtctcgtcgaggcc 30270
|||||||| |||||||||||||
Sbjct: 1026 cggtgaggatctcgtcgaggcc 1005
>ISApr9
Length = 1668
Score = 36.2 bits (18), Expect = 5.5
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 2202 gatgcagcgcaggaaggt 2219
||||||||||||||||||
Sbjct: 1255 gatgcagcgcaggaaggt 1238
>ISAnsp12
Length = 2926
Score = 36.2 bits (18), Expect = 5.5
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 23450 gcaggtcgaccatcgaga 23467
||||||||||||||||||
Sbjct: 2715 gcaggtcgaccatcgaga 2698
>ISMdi1
Length = 1058
Score = 36.2 bits (18), Expect = 5.5
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 23359 cgggcgagcgccgcgcgg 23376
||||||||||||||||||
Sbjct: 577 cgggcgagcgccgcgcgg 594
>ISAnsp5
Length = 2192
Score = 36.2 bits (18), Expect = 5.5
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 37368 gcagcgcgccgtggcgga 37385
||||||||||||||||||
Sbjct: 401 gcagcgcgccgtggcgga 418
>ISStma5
Length = 1228
Score = 36.2 bits (18), Expect = 5.5
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 33464 gccagctcgcgcttgagc 33481
||||||||||||||||||
Sbjct: 285 gccagctcgcgcttgagc 268
>ISMex22
Length = 3864
Score = 36.2 bits (18), Expect = 5.5
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 2325 gttgacggcgcgcacgag 2342
||||||||||||||||||
Sbjct: 3540 gttgacggcgcgcacgag 3523
>ISThsp18
Length = 1330
Score = 36.2 bits (18), Expect = 5.5
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 63937 cgtagcccttgtcggcgc 63954
||||||||||||||||||
Sbjct: 867 cgtagcccttgtcggcgc 850
>ISThsp11
Length = 1814
Score = 36.2 bits (18), Expect = 5.5
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 59729 cgccggtggcgatgtagg 59746
||||||||||||||||||
Sbjct: 1091 cgccggtggcgatgtagg 1074
>ISAzo31
Length = 1324
Score = 36.2 bits (18), Expect = 5.5
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 38215 ccggcgccgagcacgggt 38232
||||||||||||||||||
Sbjct: 832 ccggcgccgagcacgggt 815
>ISCARN53
Length = 1404
Score = 36.2 bits (18), Expect = 5.5
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 9116 tcgatctggcgcaggcgg 9133
||||||||||||||||||
Sbjct: 305 tcgatctggcgcaggcgg 322
>ISCARN40
Length = 1264
Score = 36.2 bits (18), Expect = 5.5
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 11098 gccgctggcgtcggccac 11115
||||||||||||||||||
Sbjct: 268 gccgctggcgtcggccac 251
>ISVei5
Length = 1620
Score = 36.2 bits (18), Expect = 5.5
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 58314 ccaggtcgcgggcgccgg 58331
||||||||||||||||||
Sbjct: 311 ccaggtcgcgggcgccgg 328
>ISThsp5
Length = 2652
Score = 36.2 bits (18), Expect = 5.5
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 7827 tggccagccacgaccgcgcctc 7848
|||||||||||||||| |||||
Sbjct: 1200 tggccagccacgaccgagcctc 1221
>ISCARN29
Length = 1044
Score = 36.2 bits (18), Expect = 5.5
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 13294 cgccgaaggggtcggcgc 13311
||||||||||||||||||
Sbjct: 589 cgccgaaggggtcggcgc 606
>ISCARN23
Length = 1907
Score = 36.2 bits (18), Expect = 5.5
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 20494 gcgccgcctcgtcctcgg 20511
||||||||||||||||||
Sbjct: 1411 gcgccgcctcgtcctcgg 1394
Score = 36.2 bits (18), Expect = 5.5
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 25972 cgatgtcgaagggctctt 25989
||||||||||||||||||
Sbjct: 1834 cgatgtcgaagggctctt 1817
>ISNha5
Length = 3904
Score = 36.2 bits (18), Expect = 5.5
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 57114 cggctcgcgaagatcgtg 57131
||||||||||||||||||
Sbjct: 1606 cggctcgcgaagatcgtg 1589
>ISRta2
Length = 1386
Score = 36.2 bits (18), Expect = 5.5
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 37231 ggcggtgacctcgtccacgacc 37252
||||||||||||||||| ||||
Sbjct: 549 ggcggtgacctcgtccatgacc 528
>ISSpu2
Length = 1152
Score = 36.2 bits (18), Expect = 5.5
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 25467 cagcatggcggtcagtct 25484
||||||||||||||||||
Sbjct: 205 cagcatggcggtcagtct 188
>ISEc20
Length = 1459
Score = 36.2 bits (18), Expect = 5.5
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 23516 cgagccggatcgccgagt 23533
||||||||||||||||||
Sbjct: 1197 cgagccggatcgccgagt 1180
>ISChy4
Length = 2172
Score = 36.2 bits (18), Expect = 5.5
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 36889 tccctgccgtatgccgct 36906
||||||||||||||||||
Sbjct: 422 tccctgccgtatgccgct 439
>ISPme1
Length = 1671
Score = 36.2 bits (18), Expect = 5.5
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 2202 gatgcagcgcaggaaggt 2219
||||||||||||||||||
Sbjct: 1258 gatgcagcgcaggaaggt 1241
>ISFal2
Length = 826
Score = 36.2 bits (18), Expect = 5.5
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 23681 gcgggtcctcgacgagct 23698
||||||||||||||||||
Sbjct: 510 gcgggtcctcgacgagct 527
>ISMva1
Length = 1093
Score = 36.2 bits (18), Expect = 5.5
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 9815 gtgcagccacgcccaggc 9832
||||||||||||||||||
Sbjct: 409 gtgcagccacgcccaggc 392
>ISLxx3
Length = 2637
Score = 36.2 bits (18), Expect = 5.5
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 3670 gacgacgtccgcggtgac 3687
||||||||||||||||||
Sbjct: 1543 gacgacgtccgcggtgac 1526
>ISRle1
Length = 1409
Score = 36.2 bits (18), Expect = 5.5
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 42960 gccgtccccttcttcatc 42977
||||||||||||||||||
Sbjct: 956 gccgtccccttcttcatc 939
>ISPsy14
Length = 2597
Score = 36.2 bits (18), Expect = 5.5
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 27497 gcaagacggcgacgccgt 27514
||||||||||||||||||
Sbjct: 911 gcaagacggcgacgccgt 894
>ISSfl4
Length = 1451
Score = 36.2 bits (18), Expect = 5.5
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 23516 cgagccggatcgccgagt 23533
||||||||||||||||||
Sbjct: 1197 cgagccggatcgccgagt 1180
>ISH27-2
Length = 1389
Score = 36.2 bits (18), Expect = 5.5
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 50255 cgccgacagcgagacgtccgcc 50276
|||||||||||| |||||||||
Sbjct: 1275 cgccgacagcgacacgtccgcc 1296
>IS4811
Length = 5396
Score = 36.2 bits (18), Expect = 5.5
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 15784 cgagatcgtcgacgcgat 15801
||||||||||||||||||
Sbjct: 2151 cgagatcgtcgacgcgat 2168
>IS406
Length = 1367
Score = 36.2 bits (18), Expect = 5.5
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 64315 gcgtaggcgcgaagcgccggag 64336
||||||||||| ||||||||||
Sbjct: 57 gcgtaggcgcgtagcgccggag 78
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_18_length_60292_cov_62.9537_ID_5204
(60,292 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISPebe1 | IS256 | Pelagibaca bermudensis | 40 | 0.33 | |
| ISAzs14 | IS630 | Azospirillum sp. | 40 | 0.33 | |
| ISApr11 | IS1380 | Alpha proteobacterium | 40 | 0.33 | |
| ISAnsp7 | IS4 | IS10 | Anaeromyxobacter sp. | 40 | 0.33 |
| ISAli4 | IS3 | IS51 | Azospirillum lipoferum | 40 | 0.33 |
| ISRm21 | ISAs1 | Sinorhizobium meliloti | 40 | 0.33 | |
| ISXca1 | IS3 | IS407 | Xanthomonas campestris | 40 | 0.33 |
| ISH7B | ISNCY | Halobacterium sp. | 40 | 0.33 | |
| ISH7A | ISNCY | Halobacterium sp. | 40 | 0.33 | |
| IS100L | IS21 | - | Yersinia pestis | 40 | 0.33 |
| ISRsp12 | Tn3 | Rhizhobium sp. | 38 | 1.3 | |
| TnAs2 | Tn3 | Aeromonas salmonicida | 38 | 1.3 | |
| ISAlac1 | ISLre2 | Alicyclobacillus acidocaldarius | 38 | 1.3 | |
| ISPa43 | Tn3 | Pseudomonas aeruginosa | 38 | 1.3 | |
| ISRsp17 | ISNCY | ISDol1 | Rhizobium sp. | 38 | 1.3 |
| ISRhru4 | IS256 | Rhodospirillum rubrum | 38 | 1.3 | |
| ISMpo6 | IS1182 | Methylobacterium populi | 38 | 1.3 | |
| ISMex39 | IS21 | Methylobacterium extorquens | 38 | 1.3 | |
| ISMdi28 | IS701 | Methylobacterium dichloromethanicum | 38 | 1.3 | |
| ISSav5 | IS481 | Streptomyces avermitilis | 38 | 1.3 | |
| ISRhsp5 | IS66 | Rhodobacter sphaeroides | 38 | 1.3 | |
| ISRta2 | IS256 | Ralstonia taiwanensis | 38 | 1.3 | |
| ISMva1 | IS1595 | ISSod11 | Mycobacterium vanbaalenii | 38 | 1.3 |
| ISXax1 | IS256 | Xanthomonas axonopodis | 38 | 1.3 | |
| ISRm2 | IS66 | Sinorhizobium meliloti | 38 | 1.3 | |
| IS1474 | IS21 | - | Pseudomonas alcaligenes | 38 | 1.3 |
| IS1136 | IS200/IS605 | IS1341 | Saccharopolyspora erythraea | 38 | 1.3 |
| TnXo19 | Tn3 | Xanthomonas oryzae | 36 | 5.1 | |
| ISAeme21 | IS481 | Aeromonas media | 36 | 5.1 | |
| ISHko3 | IS200/IS605 | Halorubrum kocurii | 36 | 5.1 | |
| ISHvo24 | IS200/IS605 | IS1341 | Haloferax volcanii | 36 | 5.1 |
| ISSiac4 | ISKra4 | ISKra4 | Singulisphaera acidiphila | 36 | 5.1 |
| ISNisp4 | IS256 | Nitrobacter sp. | 36 | 5.1 | |
| ISAzs2 | IS21 | Azospirillum sp. | 36 | 5.1 | |
| ISNma1 | IS5 | ISH1 | Natrialba magadii | 36 | 5.1 |
| ISAcfe2 | IS1182 | Acidimicrobium ferrooxidans | 36 | 5.1 | |
| ISMgi3 | IS1182 | Mycobacterium gilvum | 36 | 5.1 | |
| ISGau7 | IS21 | Gemmatimonas aurantiaca | 36 | 5.1 | |
| ISVsp3 | IS66 | Verrucomicrobium spinosum | 36 | 5.1 | |
| ISPse1 | IS1182 | Paracoccus seriniphilus | 36 | 5.1 | |
| ISBmu23 | IS5 | IS5 | Burkholderia multivorans | 36 | 5.1 |
| ISAcp1 | IS5 | IS5 | Acidobacterium capsulatum | 36 | 5.1 |
| ISMno33 | IS1182 | Methylobacterium nodulans | 36 | 5.1 | |
| ISMtsp8 | IS21 | Methylobacterium sp. | 36 | 5.1 | |
| ISPfr3 | ISL3 | Propionibacterium freudenreichii | 36 | 5.1 | |
| ISMch4 | IS110 | IS1111 | Methylobacterium chloromethanicum | 36 | 5.1 |
| ISAar41 | IS110 | Arthrobacter arilaitensis | 36 | 5.1 | |
| ISStsp3 | IS1380 | Streptomyces sp. | 36 | 5.1 | |
| ISCef7 | IS1380 | Corynebacterium efficiens | 36 | 5.1 | |
| ISAcr5 | IS1380 | Acidiphilium cryptum | 36 | 5.1 | |
| ISMpo3 | IS1380 | Methylobacterium populi | 36 | 5.1 | |
| ISApr10 | IS256 | Alpha proteobacterium | 36 | 5.1 | |
| ISAde1 | IS66 | Anaeromyxobacter dehalogenans | 36 | 5.1 | |
| ISMdi18 | IS1595 | ISNwi1 | Methylobacterium dichloromethanicum | 36 | 5.1 |
| ISMdi5 | IS3 | IS3 | Methylobacterium dichloromethanicum | 36 | 5.1 |
| ISMex26 | ISL3 | Methylobacterium extorquens | 36 | 5.1 | |
| ISMdi13 | IS256 | Methylobacterium dichloromethanicum | 36 | 5.1 | |
| ISMex38 | Tn3 | Methylobacterium extorquens | 36 | 5.1 | |
| ISAnsp5 | IS21 | Anaeromyxobacter sp. | 36 | 5.1 | |
| ISStma4 | IS110 | Stenotrophomonas maltophilia | 36 | 5.1 | |
| ISThsp19 | IS21 | Thiomonas sp. | 36 | 5.1 | |
| ISAzo34 | IS256 | Azoarcus sp. | 36 | 5.1 | |
| ISAzo17 | IS21 | Azoarcus sp. | 36 | 5.1 | |
| ISAzo15 | IS66 | Azoarcus sp. | 36 | 5.1 | |
| ISSen2 | IS5 | IS427 | Salmonella enterica | 36 | 5.1 |
| ISGob2 | IS66 | ISBst12 | Gemmata obscuriglobus | 36 | 5.1 |
| ISSce1 | IS1 | ISMhu11 | Sorangium cellulosum | 36 | 5.1 |
| ISDsh3 | IS1595 | ISNha5 | Dinoroseobacter shibae | 36 | 5.1 |
| ISDge10 | IS200/IS605 | Deinococcus geothermalis | 36 | 5.1 | |
| ISSer1 | IS110 | Saccharopolyspora erythraea | 36 | 5.1 | |
| ISAav5 | IS481 | Acidovorax avenae | 36 | 5.1 | |
| ISAisp3 | IS481 | Acidovorax sp. | 36 | 5.1 | |
| ISXc8 | IS3 | IS3 | Xanthomonas campestris | 36 | 5.1 |
| ISLve1 | IS3 | IS3 | Loktanella vestfoldensis | 36 | 5.1 |
| ISHne1 | IS3 | IS51 | Hyphomonas neptunium | 36 | 5.1 |
| ISShsp3 | IS3 | IS3 | Sphingomonas sp. | 36 | 5.1 |
| ISSpo2 | IS1380 | Silicibacter pomeroyi | 36 | 5.1 | |
| ISSav4 | IS701 | Streptomyces avermitilis | 36 | 5.1 | |
| ISSav2 | IS701 | Streptomyces avermitilis | 36 | 5.1 | |
| ISXo16 | IS1595 | IS1595 | Xanthomonas oryzae | 36 | 5.1 |
| ISFsp1 | ISL3 | Frankia sp. | 36 | 5.1 | |
| ISAli15 | IS66 | Azospirillum lipoferum | 36 | 5.1 | |
| ISBlo1 | IS21 | Bifidobacterium longum | 36 | 5.1 | |
| ISXo1 | IS5 | IS5 | Xanthomonas oryzae | 36 | 5.1 |
| ISXa1 | ISAs1 | - | Xanthobacter autotrophicus | 36 | 5.1 |
| ISRm15 | IS5 | IS1031 | Sinorhizobium meliloti | 36 | 5.1 |
| ISMt1 | IS5 | IS427 | Mycobacterium tuberculosis | 36 | 5.1 |
| ISLdl1 | ISL3 | - | Lactobacillus delbrueckii | 36 | 5.1 |
| ISC1217 | ISNCY | - | Sulfolobus solfataricus | 36 | 5.1 |
| IS427 | IS5 | IS427 | Agrobacterium tumefaciens | 36 | 5.1 |
| IS1549 | IS1634 | - | Mycobacterium smegmatis | 36 | 5.1 |
| IS1536 | IS607 | Mycobacterium tuberculosis | 36 | 5.1 | |
| IS1490 | IS256 | - | Burkholderia cepacia | 36 | 5.1 |
| IS117 | IS110 | - | Streptomyces coelicolor | 36 | 5.1 |
| IS1164 | IS256 | - | Rhodococcus rhodochrous | 36 | 5.1 |
| IS1162 | IS21 | - | Pseudomonas fluorescens | 36 | 5.1 |
| IS1141 | IS3 | IS3 | Mycobacterium intracellulare | 36 | 5.1 |
>ISPebe1
Length = 1363
Score = 40.1 bits (20), Expect = 0.33
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 57203 gcctcctcggcgcgatcctcatgg 57226
||||| ||||||||||||||||||
Sbjct: 1166 gcctcgtcggcgcgatcctcatgg 1189
>ISAzs14
Length = 1176
Score = 40.1 bits (20), Expect = 0.33
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 53827 cgttcgacctcgaggccggcggcg 53850
|||||||||||| |||||||||||
Sbjct: 412 cgttcgacctcggggccggcggcg 389
>ISApr11
Length = 1667
Score = 40.1 bits (20), Expect = 0.33
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 18629 gcgggtgtcgcacagcgccg 18648
||||||||||||||||||||
Sbjct: 273 gcgggtgtcgcacagcgccg 254
>ISAnsp7
Length = 1579
Score = 40.1 bits (20), Expect = 0.33
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 56316 gcgtctcccgcgaggtctacggcctcat 56343
|||||| ||||||||||| |||||||||
Sbjct: 1235 gcgtcttccgcgaggtcttcggcctcat 1262
>ISAli4
Length = 1324
Score = 40.1 bits (20), Expect = 0.33
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 34388 ccagccccgcagcctctccggaatgcagccga 34419
||||||||||||| | |||||| |||||||||
Sbjct: 209 ccagccccgcagcgtttccggagtgcagccga 178
>ISRm21
Length = 1167
Score = 40.1 bits (20), Expect = 0.33
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 2473 ccgacaaggcctccatccgc 2492
||||||||||||||||||||
Sbjct: 1077 ccgacaaggcctccatccgc 1096
>ISXca1
Length = 1225
Score = 40.1 bits (20), Expect = 0.33
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 23285 cctgcacgacctgctgcgcc 23304
||||||||||||||||||||
Sbjct: 524 cctgcacgacctgctgcgcc 543
>ISH7B
Length = 2924
Score = 40.1 bits (20), Expect = 0.33
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 29647 acggcctcgacccgcccgac 29666
||||||||||||||||||||
Sbjct: 2714 acggcctcgacccgcccgac 2733
>ISH7A
Length = 3302
Score = 40.1 bits (20), Expect = 0.33
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 29647 acggcctcgacccgcccgac 29666
||||||||||||||||||||
Sbjct: 3093 acggcctcgacccgcccgac 3112
>IS100L
Length = 1950
Score = 40.1 bits (20), Expect = 0.33
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 23371 gactgcggctcttcgagccggcga 23394
|||||| |||||||||||||||||
Sbjct: 976 gactgctgctcttcgagccggcga 953
>ISRsp12
Length = 3701
Score = 38.2 bits (19), Expect = 1.3
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 37563 gacacgccgaggctggcgatgcc 37585
||||||||||||||||| |||||
Sbjct: 2254 gacacgccgaggctggccatgcc 2276
>TnAs2
Length = 8650
Score = 38.2 bits (19), Expect = 1.3
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 57292 ggcgtcgcgctcaacctgc 57310
|||||||||||||||||||
Sbjct: 2793 ggcgtcgcgctcaacctgc 2811
Score = 38.2 bits (19), Expect = 1.3
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 18013 atcgcctccgcctcgacgacctg 18035
|||||| ||||||||||||||||
Sbjct: 6213 atcgccgccgcctcgacgacctg 6235
>ISAlac1
Length = 1608
Score = 38.2 bits (19), Expect = 1.3
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 30895 gccgcttcttcgacccgtc 30913
|||||||||||||||||||
Sbjct: 1452 gccgcttcttcgacccgtc 1434
>ISPa43
Length = 19903
Score = 38.2 bits (19), Expect = 1.3
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 18830 gcggccgatctggcgggcc 18848
|||||||||||||||||||
Sbjct: 7523 gcggccgatctggcgggcc 7541
>ISRsp17
Length = 1664
Score = 38.2 bits (19), Expect = 1.3
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 25991 gcagcaggccgaggcgctg 26009
|||||||||||||||||||
Sbjct: 655 gcagcaggccgaggcgctg 673
>ISRhru4
Length = 1411
Score = 38.2 bits (19), Expect = 1.3
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 44566 gcggagctggtcggccacgtggc 44588
|||||||||||||||||| ||||
Sbjct: 1038 gcggagctggtcggccacttggc 1016
>ISMpo6
Length = 1593
Score = 38.2 bits (19), Expect = 1.3
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 14906 gggcgatggccacgcgcgg 14924
|||||||||||||||||||
Sbjct: 776 gggcgatggccacgcgcgg 794
>ISMex39
Length = 2456
Score = 38.2 bits (19), Expect = 1.3
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 58281 gacgggcgcgtcgtcgccg 58299
|||||||||||||||||||
Sbjct: 1159 gacgggcgcgtcgtcgccg 1177
Score = 36.2 bits (18), Expect = 5.1
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 54213 gcagcggtgggtgagccggtcg 54234
|||| |||||||||||||||||
Sbjct: 2267 gcagtggtgggtgagccggtcg 2246
>ISMdi28
Length = 1410
Score = 38.2 bits (19), Expect = 1.3
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 674 cggcacgccgctcgccgac 692
|||||||||||||||||||
Sbjct: 978 cggcacgccgctcgccgac 996
>ISSav5
Length = 1953
Score = 38.2 bits (19), Expect = 1.3
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 23603 caggcgcgcgcaggccgaggccg 23625
||||||| |||||||||||||||
Sbjct: 1620 caggcgcccgcaggccgaggccg 1598
>ISRhsp5
Length = 2528
Score = 38.2 bits (19), Expect = 1.3
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 41087 cgagcagccgcgccagccgggcg 41109
||||||||||| |||||||||||
Sbjct: 1057 cgagcagccgctccagccgggcg 1035
>ISRta2
Length = 1386
Score = 38.2 bits (19), Expect = 1.3
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 51220 cggtcgaggcggcgctggccgag 51242
|||||||||| ||||||||||||
Sbjct: 953 cggtcgaggccgcgctggccgag 975
>ISMva1
Length = 1093
Score = 38.2 bits (19), Expect = 1.3
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 42425 cggcggccgcgccaccggc 42443
|||||||||||||||||||
Sbjct: 484 cggcggccgcgccaccggc 502
>ISXax1
Length = 1329
Score = 38.2 bits (19), Expect = 1.3
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 47277 gcagctcgccgaactcgcc 47295
|||||||||||||||||||
Sbjct: 319 gcagctcgccgaactcgcc 301
>ISRm2
Length = 2593
Score = 38.2 bits (19), Expect = 1.3
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 46477 acatccctgcattccagcg 46495
|||||||||||||||||||
Sbjct: 486 acatccctgcattccagcg 468
>IS1474
Length = 2633
Score = 38.2 bits (19), Expect = 1.3
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 53108 ggacaaggccaaggccgag 53126
|||||||||||||||||||
Sbjct: 985 ggacaaggccaaggccgag 1003
>IS1136
Length = 1402
Score = 38.2 bits (19), Expect = 1.3
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 42318 gttcttcgccgcgttgatg 42336
|||||||||||||||||||
Sbjct: 1238 gttcttcgccgcgttgatg 1220
>TnXo19
Length = 18767
Score = 36.2 bits (18), Expect = 5.1
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 27267 agcgccgccacgagcacc 27284
||||||||||||||||||
Sbjct: 11181 agcgccgccacgagcacc 11164
>ISAeme21
Length = 1038
Score = 36.2 bits (18), Expect = 5.1
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 18365 agacgggagtggtcatca 18382
||||||||||||||||||
Sbjct: 625 agacgggagtggtcatca 608
>ISHko3
Length = 1862
Score = 36.2 bits (18), Expect = 5.1
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 8146 ccgccgccgccgtgttgc 8163
||||||||||||||||||
Sbjct: 1488 ccgccgccgccgtgttgc 1471
>ISHvo24
Length = 1462
Score = 36.2 bits (18), Expect = 5.1
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 16643 acgacgacgtgcgggccg 16660
||||||||||||||||||
Sbjct: 330 acgacgacgtgcgggccg 347
>ISSiac4
Length = 1519
Score = 36.2 bits (18), Expect = 5.1
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 40150 accgcagccgatgcaggc 40167
||||||||||||||||||
Sbjct: 858 accgcagccgatgcaggc 875
>ISNisp4
Length = 1418
Score = 36.2 bits (18), Expect = 5.1
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 5193 tcggtggagaagtggagg 5210
||||||||||||||||||
Sbjct: 85 tcggtggagaagtggagg 68
>ISAzs2
Length = 2609
Score = 36.2 bits (18), Expect = 5.1
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 140 cacgctgatcggcaagaaggtc 161
||||||||||||||||| ||||
Sbjct: 1229 cacgctgatcggcaagacggtc 1250
Score = 36.2 bits (18), Expect = 5.1
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 20051 ccccggccacaacggcgg 20068
||||||||||||||||||
Sbjct: 1618 ccccggccacaacggcgg 1635
>ISNma1
Length = 934
Score = 36.2 bits (18), Expect = 5.1
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 34881 cggttcggcgagacgttg 34898
||||||||||||||||||
Sbjct: 802 cggttcggcgagacgttg 819
>ISAcfe2
Length = 1771
Score = 36.2 bits (18), Expect = 5.1
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 58154 cccgggaacgagcccagc 58171
||||||||||||||||||
Sbjct: 1720 cccgggaacgagcccagc 1703
>ISMgi3
Length = 1770
Score = 36.2 bits (18), Expect = 5.1
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 13062 tcccgtcgcggcggggcc 13079
||||||||||||||||||
Sbjct: 209 tcccgtcgcggcggggcc 226
>ISGau7
Length = 2510
Score = 36.2 bits (18), Expect = 5.1
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 5764 gcgctcgccgtcggcgcc 5781
||||||||||||||||||
Sbjct: 389 gcgctcgccgtcggcgcc 372
>ISVsp3
Length = 2446
Score = 36.2 bits (18), Expect = 5.1
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 441 taccaggggcgcgtcttcgcgc 462
|||||||||||| |||||||||
Sbjct: 812 taccaggggcgcatcttcgcgc 791
>ISPse1
Length = 1653
Score = 36.2 bits (18), Expect = 5.1
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 2209 ccatgtcgaccagcgccc 2226
||||||||||||||||||
Sbjct: 768 ccatgtcgaccagcgccc 785
>ISBmu23
Length = 1210
Score = 36.2 bits (18), Expect = 5.1
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 19119 ggcatcgacctggcgcgc 19136
||||||||||||||||||
Sbjct: 361 ggcatcgacctggcgcgc 378
>ISAcp1
Length = 1483
Score = 36.2 bits (18), Expect = 5.1
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 53560 tcgccaagggcaaggcgg 53577
||||||||||||||||||
Sbjct: 930 tcgccaagggcaaggcgg 947
>ISMno33
Length = 1767
Score = 36.2 bits (18), Expect = 5.1
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 48098 acccggacgacgtaggcg 48115
||||||||||||||||||
Sbjct: 721 acccggacgacgtaggcg 704
>ISMtsp8
Length = 2371
Score = 36.2 bits (18), Expect = 5.1
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 28942 ggcgcgcctgacgaccac 28959
||||||||||||||||||
Sbjct: 1329 ggcgcgcctgacgaccac 1312
>ISPfr3
Length = 1457
Score = 36.2 bits (18), Expect = 5.1
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 31005 gggctcgcggtggcctgg 31022
||||||||||||||||||
Sbjct: 534 gggctcgcggtggcctgg 551
>ISMch4
Length = 1631
Score = 36.2 bits (18), Expect = 5.1
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 27728 tcaagaccgacgtcatcg 27745
||||||||||||||||||
Sbjct: 313 tcaagaccgacgtcatcg 330
>ISAar41
Length = 1346
Score = 36.2 bits (18), Expect = 5.1
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 16022 ctggccgccgagttcggg 16039
||||||||||||||||||
Sbjct: 977 ctggccgccgagttcggg 994
>ISStsp3
Length = 1925
Score = 36.2 bits (18), Expect = 5.1
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 747 ccgcccgggccgtggtcg 764
||||||||||||||||||
Sbjct: 707 ccgcccgggccgtggtcg 690
>ISCef7
Length = 1687
Score = 36.2 bits (18), Expect = 5.1
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 23944 tcggggccaggcctgcgg 23961
||||||||||||||||||
Sbjct: 202 tcggggccaggcctgcgg 185
>ISAcr5
Length = 1618
Score = 36.2 bits (18), Expect = 5.1
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 2995 gcggccaggcctcgacgc 3012
||||||||||||||||||
Sbjct: 1039 gcggccaggcctcgacgc 1022
>ISMpo3
Length = 1617
Score = 36.2 bits (18), Expect = 5.1
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 11266 cccgatcacgcgcgccatcagc 11287
||||||| ||||||||||||||
Sbjct: 1555 cccgatcccgcgcgccatcagc 1576
>ISApr10
Length = 1366
Score = 36.2 bits (18), Expect = 5.1
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 2466 gacgacgccgacaaggcc 2483
||||||||||||||||||
Sbjct: 915 gacgacgccgacaaggcc 932
>ISAde1
Length = 2957
Score = 36.2 bits (18), Expect = 5.1
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 46639 tcggctcgacgccgatcg 46656
||||||||||||||||||
Sbjct: 501 tcggctcgacgccgatcg 518
>ISMdi18
Length = 3479
Score = 36.2 bits (18), Expect = 5.1
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 54525 ctcggcgccgagaagctg 54542
||||||||||||||||||
Sbjct: 2823 ctcggcgccgagaagctg 2840
>ISMdi5
Length = 1279
Score = 36.2 bits (18), Expect = 5.1
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 30320 tggccgcccagcggcagc 30337
||||||||||||||||||
Sbjct: 918 tggccgcccagcggcagc 935
>ISMex26
Length = 1676
Score = 36.2 bits (18), Expect = 5.1
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 27478 gtcgcggtgggcgccgcc 27495
||||||||||||||||||
Sbjct: 845 gtcgcggtgggcgccgcc 862
>ISMdi13
Length = 1416
Score = 36.2 bits (18), Expect = 5.1
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 5193 tcggtggagaagtggagg 5210
||||||||||||||||||
Sbjct: 84 tcggtggagaagtggagg 67
>ISMex38
Length = 3841
Score = 36.2 bits (18), Expect = 5.1
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 55152 cggatcctcctcggcgacgtcg 55173
|||||||||||| |||||||||
Sbjct: 1950 cggatcctcctctgcgacgtcg 1929
>ISAnsp5
Length = 2192
Score = 36.2 bits (18), Expect = 5.1
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 59672 gacgcacgaggtccccgc 59689
||||||||||||||||||
Sbjct: 947 gacgcacgaggtccccgc 964
>ISStma4
Length = 1249
Score = 36.2 bits (18), Expect = 5.1
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 13413 tcccctccgcctgcccaa 13430
||||||||||||||||||
Sbjct: 537 tcccctccgcctgcccaa 520
>ISThsp19
Length = 2657
Score = 36.2 bits (18), Expect = 5.1
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 12668 gcccacaccgcctccctcgccg 12689
||||||||||||| ||||||||
Sbjct: 1747 gcccacaccgcctgcctcgccg 1726
>ISAzo34
Length = 1439
Score = 36.2 bits (18), Expect = 5.1
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 59884 tcgagcgggcgatcgagg 59901
||||||||||||||||||
Sbjct: 211 tcgagcgggcgatcgagg 228
>ISAzo17
Length = 2095
Score = 36.2 bits (18), Expect = 5.1
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 12380 ttcgggcagtgggacagc 12397
||||||||||||||||||
Sbjct: 1786 ttcgggcagtgggacagc 1803
>ISAzo15
Length = 2441
Score = 36.2 bits (18), Expect = 5.1
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 6154 ccgcttgccgtggcggcg 6171
||||||||||||||||||
Sbjct: 298 ccgcttgccgtggcggcg 281
>ISSen2
Length = 846
Score = 36.2 bits (18), Expect = 5.1
Identities = 27/30 (90%)
Strand = Plus / Plus
Query: 32169 ggctgcccgtcggtggacgcgcccgaggtc 32198
||||||| || |||||||||||| ||||||
Sbjct: 208 ggctgccggtgggtggacgcgccggaggtc 237
>ISGob2
Length = 1575
Score = 36.2 bits (18), Expect = 5.1
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 27055 gtgagccggtgtcgccgg 27072
||||||||||||||||||
Sbjct: 480 gtgagccggtgtcgccgg 463
>ISSce1
Length = 4601
Score = 36.2 bits (18), Expect = 5.1
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 32118 tccagcagcgccagcggc 32135
||||||||||||||||||
Sbjct: 2454 tccagcagcgccagcggc 2437
>ISDsh3
Length = 3472
Score = 36.2 bits (18), Expect = 5.1
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 36189 gacctgctcgcggcgatc 36206
||||||||||||||||||
Sbjct: 1545 gacctgctcgcggcgatc 1562
>ISDge10
Length = 1757
Score = 36.2 bits (18), Expect = 5.1
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 23873 ggtgctggtcggcccggt 23890
||||||||||||||||||
Sbjct: 229 ggtgctggtcggcccggt 246
>ISSer1
Length = 1447
Score = 36.2 bits (18), Expect = 5.1
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 3094 gcctcgcctgcgaggtcg 3111
||||||||||||||||||
Sbjct: 670 gcctcgcctgcgaggtcg 653
>ISAav5
Length = 1023
Score = 36.2 bits (18), Expect = 5.1
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 24252 ttcgcccaggtcctggcc 24269
||||||||||||||||||
Sbjct: 624 ttcgcccaggtcctggcc 641
>ISAisp3
Length = 1023
Score = 36.2 bits (18), Expect = 5.1
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 24252 ttcgcccaggtcctggcc 24269
||||||||||||||||||
Sbjct: 624 ttcgcccaggtcctggcc 641
>ISXc8
Length = 1227
Score = 36.2 bits (18), Expect = 5.1
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 1696 cggccgtgacgccgccgg 1713
||||||||||||||||||
Sbjct: 667 cggccgtgacgccgccgg 684
>ISLve1
Length = 1231
Score = 36.2 bits (18), Expect = 5.1
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 47537 ctgaccgcccagccgatg 47554
||||||||||||||||||
Sbjct: 823 ctgaccgcccagccgatg 806
>ISHne1
Length = 1324
Score = 36.2 bits (18), Expect = 5.1
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 40978 tcgatgcccttgagcaggccct 40999
||||||| ||||||||||||||
Sbjct: 906 tcgatgctcttgagcaggccct 927
>ISShsp3
Length = 1229
Score = 36.2 bits (18), Expect = 5.1
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 54339 ggtgccggcaagtcgacgctga 54360
|||| |||||||||||||||||
Sbjct: 156 ggtgtcggcaagtcgacgctga 177
>ISSpo2
Length = 1664
Score = 36.2 bits (18), Expect = 5.1
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 11722 cgccatcccgggcctcta 11739
||||||||||||||||||
Sbjct: 808 cgccatcccgggcctcta 825
>ISSav4
Length = 1426
Score = 36.2 bits (18), Expect = 5.1
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 23085 cgcccaggccgccgccac 23102
||||||||||||||||||
Sbjct: 958 cgcccaggccgccgccac 975
>ISSav2
Length = 1938
Score = 36.2 bits (18), Expect = 5.1
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 6118 gtcgccgtagacctcgtc 6135
||||||||||||||||||
Sbjct: 1250 gtcgccgtagacctcgtc 1233
>ISXo16
Length = 1072
Score = 36.2 bits (18), Expect = 5.1
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 23922 gaggccgccggcgcccgc 23939
||||||||||||||||||
Sbjct: 815 gaggccgccggcgcccgc 832
>ISFsp1
Length = 1732
Score = 36.2 bits (18), Expect = 5.1
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 4402 gcccgcacccgacgcagc 4419
||||||||||||||||||
Sbjct: 515 gcccgcacccgacgcagc 498
>ISAli15
Length = 2658
Score = 36.2 bits (18), Expect = 5.1
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 908 ccggctctacgcgatcga 925
||||||||||||||||||
Sbjct: 2162 ccggctctacgcgatcga 2179
>ISBlo1
Length = 2590
Score = 36.2 bits (18), Expect = 5.1
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 40187 tccgccttcggcttgggc 40204
||||||||||||||||||
Sbjct: 345 tccgccttcggcttgggc 328
>ISXo1
Length = 1156
Score = 36.2 bits (18), Expect = 5.1
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 37660 cggtgacggcgagggcctgggc 37681
|||||||| |||||||||||||
Sbjct: 77 cggtgacgccgagggcctgggc 98
>ISXa1
Length = 3041
Score = 36.2 bits (18), Expect = 5.1
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 10063 tgccgccgtcctggcggc 10080
||||||||||||||||||
Sbjct: 2074 tgccgccgtcctggcggc 2091
>ISRm15
Length = 934
Score = 36.2 bits (18), Expect = 5.1
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 45775 caaggccaagggcgtcgaggtg 45796
||||||||||||| ||||||||
Sbjct: 731 caaggccaagggcttcgaggtg 752
>ISMt1
Length = 969
Score = 36.2 bits (18), Expect = 5.1
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 29019 cgtcgagcaggggcagca 29036
||||||||||||||||||
Sbjct: 599 cgtcgagcaggggcagca 582
>ISLdl1
Length = 1508
Score = 36.2 bits (18), Expect = 5.1
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 21157 tgcgggcgtcctcgtcct 21174
||||||||||||||||||
Sbjct: 1049 tgcgggcgtcctcgtcct 1032
>ISC1217
Length = 1147
Score = 36.2 bits (18), Expect = 5.1
Identities = 24/26 (92%)
Strand = Plus / Plus
Query: 54760 tcagggagctcaaggccgagggactc 54785
||||||||||||||||| |||||||
Sbjct: 917 tcagggagctcaaggccttgggactc 942
>IS427
Length = 1271
Score = 36.2 bits (18), Expect = 5.1
Identities = 24/26 (92%)
Strand = Plus / Plus
Query: 13823 cgcggtcgtcggtgagcagggtctcc 13848
||||||||||| || |||||||||||
Sbjct: 884 cgcggtcgtcgatgggcagggtctcc 909
>IS1549
Length = 1640
Score = 36.2 bits (18), Expect = 5.1
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 35162 ggaggccttcgagggcaa 35179
||||||||||||||||||
Sbjct: 766 ggaggccttcgagggcaa 783
>IS1536
Length = 1415
Score = 36.2 bits (18), Expect = 5.1
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 1461 ccgcgtgaccgacagatc 1478
||||||||||||||||||
Sbjct: 413 ccgcgtgaccgacagatc 396
>IS1490
Length = 1433
Score = 36.2 bits (18), Expect = 5.1
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 45613 gctgatccggtcgatcgt 45630
||||||||||||||||||
Sbjct: 1369 gctgatccggtcgatcgt 1352
>IS117
Length = 2527
Score = 36.2 bits (18), Expect = 5.1
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 52611 cgtcatcgacgagggcgc 52628
||||||||||||||||||
Sbjct: 101 cgtcatcgacgagggcgc 84
>IS1164
Length = 1430
Score = 36.2 bits (18), Expect = 5.1
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 51222 gtcgaggcggcgctggccgagc 51243
|||| |||||||||||||||||
Sbjct: 1226 gtcggggcggcgctggccgagc 1247
>IS1162
Length = 2634
Score = 36.2 bits (18), Expect = 5.1
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 25991 gcagcaggccgaggcgct 26008
||||||||||||||||||
Sbjct: 1922 gcagcaggccgaggcgct 1905
>IS1141
Length = 1588
Score = 36.2 bits (18), Expect = 5.1
Identities = 24/26 (92%)
Strand = Plus / Plus
Query: 25400 ggtggcgttccttctcgtcgacctcg 25425
|||||||||||| |||| ||||||||
Sbjct: 1157 ggtggcgttcctgctcgccgacctcg 1182
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_19_length_55263_cov_98.9978_ID_5206
(55,263 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| IS1557 | ISL3 | Mycobacterium tuberculosis | 44 | 0.019 | |
| ISPa43 | Tn3 | Pseudomonas aeruginosa | 40 | 0.30 | |
| ISMex12 | IS110 | Methylobacterium extorquens | 40 | 0.30 | |
| ISMex33 | IS3 | IS51 | Methylobacterium extorquens | 40 | 0.30 |
| IS481v2 | IS481 | - | Bordetella pertussis | 40 | 0.30 |
| IS481 | IS481 | Bordetella pertussis | 40 | 0.30 | |
| ISAeme19 | ISL3 | Aeromonas media | 38 | 1.2 | |
| ISPve1 | IS21 | Paracoccus versutus | 38 | 1.2 | |
| ISRhba5 | IS5 | IS903 | Rhodobacterales bacterium | 38 | 1.2 |
| ISNha8 | IS5 | Nitrobacter hamburgensis | 38 | 1.2 | |
| ISRhru3 | IS110 | IS1111 | Rhodospirillum rubrum | 38 | 1.2 |
| ISPfr6 | ISL3 | Propionibacterium freudenreichii | 38 | 1.2 | |
| ISArsp6 | Tn3 | Arthrobacter sp. | 38 | 1.2 | |
| ISMsi1 | IS21 | Methylocella silvestris | 38 | 1.2 | |
| ISSav7 | IS481 | Streptomyces avermitilis | 38 | 1.2 | |
| ISCARN22 | IS66 | Metagenomic data from CARNOULES | 38 | 1.2 | |
| ISAnsp3 | IS66 | Anaeromyxobacter sp. | 38 | 1.2 | |
| ISAcr2 | IS6 | Acidiphilium cryptum | 38 | 1.2 | |
| ISNpe1 | IS701 | Natrinema pellirubrum | 38 | 1.2 | |
| IS117 | IS110 | - | Streptomyces coelicolor | 38 | 1.2 |
| TnXo19 | Tn3 | Xanthomonas oryzae | 36 | 4.7 | |
| TnAs3 | Tn3 | Aeromonas salmonicida | 36 | 4.7 | |
| ISMpo4 | IS110 | IS1111 | Methylobacterium populi | 36 | 4.7 |
| ISRsp12 | Tn3 | Rhizhobium sp. | 36 | 4.7 | |
| ISNaoc2 | IS200/IS605 | IS1341 | Natronococcus occultus | 36 | 4.7 |
| TnAs1 | Tn3 | Aeromonas salmonicida | 36 | 4.7 | |
| ISHvo18 | IS200/IS605 | Haloferax volcanii | 36 | 4.7 | |
| ISBsa1 | IS256 | Blastococcus saxobsidens | 36 | 4.7 | |
| ISNamo2 | IS5 | ISH1 | Natronomonas moolapensis | 36 | 4.7 |
| ISSer2 | IS256 | Saccharopolyspora erythraea | 36 | 4.7 | |
| ISGpo1 | IS256 | Gordonia polyisoprenivorans | 36 | 4.7 | |
| ISBsu2 | IS256 | Bacillus subtilis | 36 | 4.7 | |
| ISRhsp8 | IS5 | IS903 | Rhodobacter sphaeroides | 36 | 4.7 |
| ISRmsp2 | IS1182 | Ruminococcus sp. | 36 | 4.7 | |
| ISXac4 | IS3 | IS407 | Xanthomonas axonopodis | 36 | 4.7 |
| ISCku10 | ISNCY | ISDol1 | Candidatus Kuenenia stuttgartiensis | 36 | 4.7 |
| ISRhsp6 | IS5 | IS5 | Rhodobacter sphaeroides | 36 | 4.7 |
| ISPhae1 | IS5 | IS5 | Paracoccus haeundaensis | 36 | 4.7 |
| ISStsp1 | ISAzo13 | Streptomyces sp. | 36 | 4.7 | |
| ISNml2 | IS1380 | Nakamurella multipartita | 36 | 4.7 | |
| ISNml1 | IS1380 | Nakamurella multipartita | 36 | 4.7 | |
| ISRop1 | IS1380 | Rhodococcus opacus | 36 | 4.7 | |
| ISGbr1 | IS1380 | Gordonia bronchialis | 36 | 4.7 | |
| ISMyma7 | IS1380 | - | Mycobacterium marinum | 36 | 4.7 |
| ISMgi1 | IS1380 | Mycobacterium gilvum | 36 | 4.7 | |
| ISBma2 | IS1182 | Burkholderia mallei | 36 | 4.7 | |
| ISMex9 | IS110 | IS1111 | Methylobacterium extorquens | 36 | 4.7 |
| ISMex22 | Tn3 | Methylobacterium extorquens | 36 | 4.7 | |
| ISCARN86 | IS3 | IS407 | Metagenomic data from CARNOULES | 36 | 4.7 |
| ISCARN74 | IS5 | IS5 | Metagenomic data from CARNOULES | 36 | 4.7 |
| ISCARN48 | IS66 | Metagenomic data from CARNOULES | 36 | 4.7 | |
| ISBj7_B | IS66 | Bradyrhizobium japonicum | 36 | 4.7 | |
| ISMlu1 | IS256 | Micrococcus luteus | 36 | 4.7 | |
| ISGdi13 | IS1182 | Gluconacetobacter diazotrophicus | 36 | 4.7 | |
| ISSde12 | IS91 | Shewanella denitrificans | 36 | 4.7 | |
| ISGka5 | IS66 | ISBst12 | Geobacillus kaustophilus | 36 | 4.7 |
| IS1553 | IS256 | Mycobacterium tuberculosis | 36 | 4.7 | |
| ISTesp2 | ISL3 | Terrabacter sp. | 36 | 4.7 | |
| ISRel3 | IS21 | Rhizobium etli | 36 | 4.7 | |
| ISChy3 | IS481 | Carboxydothermus hydrogenoformans | 36 | 4.7 | |
| ISXo18 | IS3 | IS407 | Xanthomonas oryzae | 36 | 4.7 |
| ISSto6 | IS110 | IS1111 | Sulfolobus tokodaii | 36 | 4.7 |
| ISTfe1 | ISL3 | Acidithiobacillus ferrooxidans | 36 | 4.7 | |
| ISPa11 | IS110 | IS1111 | Pseudomonas aeruginosa | 36 | 4.7 |
| ISRtr1 | IS256 | - | Rhizobium tropici | 36 | 4.7 |
| ISRsp1 | IS66 | - | Rhizobium sp. | 36 | 4.7 |
| IS481v1 | IS481 | - | Bordetella pertussis | 36 | 4.7 |
| IS1489v1 | ISL3 | - | Pseudomonas putida | 36 | 4.7 |
| IS1400 | IS3 | IS407 | Yersinia enterocolitica | 36 | 4.7 |
| IS1122 | IS481 | - | Clavibacter michiganensis | 36 | 4.7 |
| IS1121 | IS481 | - | Clavibacter michiganensis | 36 | 4.7 |
| IS112 | IS5 | ISL2 | Streptomyces albus | 36 | 4.7 |
| IS1066 | IS630 | - | Pseudomonas sp. | 36 | 4.7 |
>IS1557
Length = 1509
Score = 44.1 bits (22), Expect = 0.019
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 4552 gtcgtggtcggcgaccacggtcaggtaccggtgg 4585
|||||| ||| ||||||| |||||||||||||||
Sbjct: 698 gtcgtgatcgacgaccaccgtcaggtaccggtgg 665
>ISPa43
Length = 19903
Score = 40.1 bits (20), Expect = 0.30
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 32822 tcggtctggtgggcgcgggc 32841
||||||||||||||||||||
Sbjct: 7258 tcggtctggtgggcgcgggc 7277
>ISMex12
Length = 1418
Score = 40.1 bits (20), Expect = 0.30
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 31663 cgtcatcggcgaggtgctcgggct 31686
||||||||||||||||| ||||||
Sbjct: 821 cgtcatcggcgaggtgcgcgggct 844
>ISMex33
Length = 1318
Score = 40.1 bits (20), Expect = 0.30
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 28243 gatgaaggcgatcatgaccg 28262
||||||||||||||||||||
Sbjct: 388 gatgaaggcgatcatgaccg 369
>IS481v2
Length = 1043
Score = 40.1 bits (20), Expect = 0.30
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 40797 cgacatccaccccgacgagc 40816
||||||||||||||||||||
Sbjct: 643 cgacatccaccccgacgagc 662
Score = 36.2 bits (18), Expect = 4.7
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 29976 gcgcgcatcgcccaggcg 29993
||||||||||||||||||
Sbjct: 365 gcgcgcatcgcccaggcg 382
>IS481
Length = 1043
Score = 40.1 bits (20), Expect = 0.30
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 40797 cgacatccaccccgacgagc 40816
||||||||||||||||||||
Sbjct: 643 cgacatccaccccgacgagc 662
Score = 36.2 bits (18), Expect = 4.7
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 29976 gcgcgcatcgcccaggcg 29993
||||||||||||||||||
Sbjct: 365 gcgcgcatcgcccaggcg 382
>ISAeme19
Length = 1304
Score = 38.2 bits (19), Expect = 1.2
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 4474 ctcgccgagctgctcgtagaagg 4496
|||||||||||||||| ||||||
Sbjct: 692 ctcgccgagctgctcgaagaagg 670
>ISPve1
Length = 2503
Score = 38.2 bits (19), Expect = 1.2
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 23294 tcgccaccctgcgccggct 23312
|||||||||||||||||||
Sbjct: 1313 tcgccaccctgcgccggct 1331
>ISRhba5
Length = 1053
Score = 38.2 bits (19), Expect = 1.2
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 33879 gagcaagcccaagcccgcc 33897
|||||||||||||||||||
Sbjct: 69 gagcaagcccaagcccgcc 87
>ISNha8
Length = 1288
Score = 38.2 bits (19), Expect = 1.2
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 51361 tccgacgcggtcgcggccg 51379
|||||||||||||||||||
Sbjct: 1096 tccgacgcggtcgcggccg 1078
>ISRhru3
Length = 1382
Score = 38.2 bits (19), Expect = 1.2
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 6911 ccggacagttatcgcagtggctg 6933
|||||| ||||||||||||||||
Sbjct: 284 ccggaccgttatcgcagtggctg 306
>ISPfr6
Length = 1436
Score = 38.2 bits (19), Expect = 1.2
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 51697 cgaggctggcgatgagctt 51715
|||||||||||||||||||
Sbjct: 1185 cgaggctggcgatgagctt 1167
>ISArsp6
Length = 26712
Score = 38.2 bits (19), Expect = 1.2
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 41889 cgctgggccccgccgggac 41907
|||||||||||||||||||
Sbjct: 8433 cgctgggccccgccgggac 8451
Score = 36.2 bits (18), Expect = 4.7
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 42067 gtggcacgcacccggagcgggc 42088
||||||||||||||| ||||||
Sbjct: 5354 gtggcacgcacccggcgcgggc 5333
Score = 36.2 bits (18), Expect = 4.7
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 10856 gaccgcctcacgcaccgc 10873
||||||||||||||||||
Sbjct: 22791 gaccgcctcacgcaccgc 22808
>ISMsi1
Length = 2307
Score = 38.2 bits (19), Expect = 1.2
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 36748 gacggcggcggcgatggcg 36766
|||||||||||||||||||
Sbjct: 1790 gacggcggcggcgatggcg 1772
>ISSav7
Length = 2992
Score = 38.2 bits (19), Expect = 1.2
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 11831 ccggccgcggcggcgaccg 11849
|||||||||||||||||||
Sbjct: 795 ccggccgcggcggcgaccg 813
Score = 36.2 bits (18), Expect = 4.7
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 36749 acggcggcggcgatggcggcgc 36770
||||||||| ||||||||||||
Sbjct: 1280 acggcggcgtcgatggcggcgc 1259
>ISCARN22
Length = 2674
Score = 38.2 bits (19), Expect = 1.2
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 10075 cgacgaaggtctccagcag 10093
|||||||||||||||||||
Sbjct: 2477 cgacgaaggtctccagcag 2459
>ISAnsp3
Length = 2518
Score = 38.2 bits (19), Expect = 1.2
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 24824 gcgcgccgcgctcgacgcg 24842
|||||||||||||||||||
Sbjct: 1948 gcgcgccgcgctcgacgcg 1966
>ISAcr2
Length = 892
Score = 38.2 bits (19), Expect = 1.2
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 28072 ccagctcgtcgaggccggc 28090
|||||||||||||||||||
Sbjct: 285 ccagctcgtcgaggccggc 267
>ISNpe1
Length = 1277
Score = 38.2 bits (19), Expect = 1.2
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 54998 cgaagaggtaggtgttcgc 55016
|||||||||||||||||||
Sbjct: 608 cgaagaggtaggtgttcgc 590
>IS117
Length = 2527
Score = 38.2 bits (19), Expect = 1.2
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 41007 catcgacgagggcgccgcc 41025
|||||||||||||||||||
Sbjct: 98 catcgacgagggcgccgcc 80
>TnXo19
Length = 18767
Score = 36.2 bits (18), Expect = 4.7
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 10237 cgggcagccgcaccacga 10254
||||||||||||||||||
Sbjct: 5869 cgggcagccgcaccacga 5852
>TnAs3
Length = 18735
Score = 36.2 bits (18), Expect = 4.7
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 33045 gatcgtcgccagcatcga 33062
||||||||||||||||||
Sbjct: 12123 gatcgtcgccagcatcga 12140
>ISMpo4
Length = 1767
Score = 36.2 bits (18), Expect = 4.7
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 40839 cctcgcccagatgctgcg 40856
||||||||||||||||||
Sbjct: 421 cctcgcccagatgctgcg 438
>ISRsp12
Length = 3701
Score = 36.2 bits (18), Expect = 4.7
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 48932 tcaccctggcggccgatg 48949
||||||||||||||||||
Sbjct: 3446 tcaccctggcggccgatg 3429
>ISNaoc2
Length = 1458
Score = 36.2 bits (18), Expect = 4.7
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 2654 cggcaccgacagggccgg 2671
||||||||||||||||||
Sbjct: 71 cggcaccgacagggccgg 88
>TnAs1
Length = 6694
Score = 36.2 bits (18), Expect = 4.7
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 47986 cggcttgccggcctcgac 48003
||||||||||||||||||
Sbjct: 6523 cggcttgccggcctcgac 6506
>ISHvo18
Length = 1892
Score = 36.2 bits (18), Expect = 4.7
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 20365 gcgttcttggcgtagccg 20382
||||||||||||||||||
Sbjct: 718 gcgttcttggcgtagccg 701
>ISBsa1
Length = 1464
Score = 36.2 bits (18), Expect = 4.7
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 24824 gcgcgccgcgctcgacgc 24841
||||||||||||||||||
Sbjct: 1342 gcgcgccgcgctcgacgc 1359
>ISNamo2
Length = 937
Score = 36.2 bits (18), Expect = 4.7
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 5589 gagcagctcgcgccagat 5606
||||||||||||||||||
Sbjct: 374 gagcagctcgcgccagat 357
>ISSer2
Length = 1473
Score = 36.2 bits (18), Expect = 4.7
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 48391 gatccggtcggcgatgcggttc 48412
||||||| ||||||||||||||
Sbjct: 921 gatccgggcggcgatgcggttc 942
>ISGpo1
Length = 1432
Score = 36.2 bits (18), Expect = 4.7
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 36204 cgccgatgacgacgcccatgcc 36225
|||||| |||||||||||||||
Sbjct: 1000 cgccgaagacgacgcccatgcc 1021
>ISBsu2
Length = 1369
Score = 36.2 bits (18), Expect = 4.7
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 11479 tggtctggaagaaggtgcacgt 11500
||||||||||||||| ||||||
Sbjct: 834 tggtctggaagaaggagcacgt 855
>ISRhsp8
Length = 1054
Score = 36.2 bits (18), Expect = 4.7
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 33879 gagcaagcccaagcccgc 33896
||||||||||||||||||
Sbjct: 69 gagcaagcccaagcccgc 86
>ISRmsp2
Length = 1687
Score = 36.2 bits (18), Expect = 4.7
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 16212 gcagcatcacaacgacta 16229
||||||||||||||||||
Sbjct: 1447 gcagcatcacaacgacta 1430
>ISXac4
Length = 1202
Score = 36.2 bits (18), Expect = 4.7
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 9712 cgcaccacctgcggcaag 9729
||||||||||||||||||
Sbjct: 877 cgcaccacctgcggcaag 860
>ISCku10
Length = 1883
Score = 36.2 bits (18), Expect = 4.7
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 13889 tctgtccagcccatgatg 13906
||||||||||||||||||
Sbjct: 1548 tctgtccagcccatgatg 1531
>ISRhsp6
Length = 1486
Score = 36.2 bits (18), Expect = 4.7
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 41064 gcagtcgacctccggctc 41081
||||||||||||||||||
Sbjct: 947 gcagtcgacctccggctc 930
>ISPhae1
Length = 1485
Score = 36.2 bits (18), Expect = 4.7
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 41064 gcagtcgacctccggctc 41081
||||||||||||||||||
Sbjct: 946 gcagtcgacctccggctc 929
>ISStsp1
Length = 1694
Score = 36.2 bits (18), Expect = 4.7
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 23167 ggcagcctggccccggccgtgc 23188
||||||||||||| ||||||||
Sbjct: 861 ggcagcctggccctggccgtgc 840
>ISNml2
Length = 1689
Score = 36.2 bits (18), Expect = 4.7
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 40005 acggcctcaacgccgccg 40022
||||||||||||||||||
Sbjct: 265 acggcctcaacgccgccg 248
>ISNml1
Length = 1636
Score = 36.2 bits (18), Expect = 4.7
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 12617 ctcggcgacccgggcgccgggc 12638
||||||||||| ||||||||||
Sbjct: 947 ctcggcgaccccggcgccgggc 926
>ISRop1
Length = 4160
Score = 36.2 bits (18), Expect = 4.7
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 40999 atcgccgccatcgacgag 41016
||||||||||||||||||
Sbjct: 3395 atcgccgccatcgacgag 3412
>ISGbr1
Length = 1645
Score = 36.2 bits (18), Expect = 4.7
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 33505 tacttcgacgacctcggcccgc 33526
||||||| ||||||||||||||
Sbjct: 998 tacttcggcgacctcggcccgc 977
>ISMyma7
Length = 1694
Score = 36.2 bits (18), Expect = 4.7
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 902 cggtggcgatcatcgccg 919
||||||||||||||||||
Sbjct: 1494 cggtggcgatcatcgccg 1477
>ISMgi1
Length = 1614
Score = 36.2 bits (18), Expect = 4.7
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 47111 cgacccggctcagccggg 47128
||||||||||||||||||
Sbjct: 688 cgacccggctcagccggg 705
>ISBma2
Length = 1573
Score = 36.2 bits (18), Expect = 4.7
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 45251 gatctgcgggcgctgccc 45268
||||||||||||||||||
Sbjct: 1104 gatctgcgggcgctgccc 1121
>ISMex9
Length = 1383
Score = 36.2 bits (18), Expect = 4.7
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 45361 gcgggatcgctctcgccgtggc 45382
|||||| |||||||||||||||
Sbjct: 248 gcgggaccgctctcgccgtggc 269
>ISMex22
Length = 3864
Score = 36.2 bits (18), Expect = 4.7
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 36969 cggcgatgatcttgacgt 36986
||||||||||||||||||
Sbjct: 3037 cggcgatgatcttgacgt 3020
>ISCARN86
Length = 1289
Score = 36.2 bits (18), Expect = 4.7
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 22684 gagtgtggcctgtcggtg 22701
||||||||||||||||||
Sbjct: 1111 gagtgtggcctgtcggtg 1094
>ISCARN74
Length = 1203
Score = 36.2 bits (18), Expect = 4.7
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 47360 cagaccccggcgccgagg 47377
||||||||||||||||||
Sbjct: 285 cagaccccggcgccgagg 302
>ISCARN48
Length = 2581
Score = 36.2 bits (18), Expect = 4.7
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 36566 agcggggtggcgtgcgcg 36583
||||||||||||||||||
Sbjct: 2483 agcggggtggcgtgcgcg 2466
>ISBj7_B
Length = 2865
Score = 36.2 bits (18), Expect = 4.7
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 420 cgcgatgtccgagacgaccgcg 441
||||| ||||||||||||||||
Sbjct: 2663 cgcgacgtccgagacgaccgcg 2684
>ISMlu1
Length = 1413
Score = 36.2 bits (18), Expect = 4.7
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 25572 ctcagccagcaccgcgccgacc 25593
||||||||||||||| ||||||
Sbjct: 1235 ctcagccagcaccgccccgacc 1214
>ISGdi13
Length = 1452
Score = 36.2 bits (18), Expect = 4.7
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 10470 gccgcgccggaacgtcgc 10487
||||||||||||||||||
Sbjct: 381 gccgcgccggaacgtcgc 364
>ISSde12
Length = 2295
Score = 36.2 bits (18), Expect = 4.7
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 6759 gctcatgctcgctgtcgc 6776
||||||||||||||||||
Sbjct: 1917 gctcatgctcgctgtcgc 1934
>ISGka5
Length = 1610
Score = 36.2 bits (18), Expect = 4.7
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 22970 tggtcatgcgcgatgccc 22987
||||||||||||||||||
Sbjct: 1106 tggtcatgcgcgatgccc 1089
>IS1553
Length = 1406
Score = 36.2 bits (18), Expect = 4.7
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 41300 cggccatcgacatcacctggcc 41321
|||||||||||| |||||||||
Sbjct: 674 cggccatcgacaccacctggcc 653
>ISTesp2
Length = 1397
Score = 36.2 bits (18), Expect = 4.7
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 3704 tgctggcggcaggccacc 3721
||||||||||||||||||
Sbjct: 371 tgctggcggcaggccacc 354
Score = 36.2 bits (18), Expect = 4.7
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 32063 cccgccttcgtcgagctc 32080
||||||||||||||||||
Sbjct: 1156 cccgccttcgtcgagctc 1173
>ISRel3
Length = 2308
Score = 36.2 bits (18), Expect = 4.7
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 34709 ctctcgccgacgaagtcc 34726
||||||||||||||||||
Sbjct: 1139 ctctcgccgacgaagtcc 1156
>ISChy3
Length = 3098
Score = 36.2 bits (18), Expect = 4.7
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 46568 gcatccgggattcctcgt 46585
||||||||||||||||||
Sbjct: 1502 gcatccgggattcctcgt 1485
>ISXo18
Length = 1189
Score = 36.2 bits (18), Expect = 4.7
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 47084 gcaggtccgccgcctcacgcgt 47105
|||||||||||||| |||||||
Sbjct: 591 gcaggtccgccgccgcacgcgt 612
>ISSto6
Length = 1246
Score = 36.2 bits (18), Expect = 4.7
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 44811 catcaccaacaacaccaa 44828
||||||||||||||||||
Sbjct: 827 catcaccaacaacaccaa 810
>ISTfe1
Length = 1303
Score = 36.2 bits (18), Expect = 4.7
Identities = 24/26 (92%)
Strand = Plus / Minus
Query: 22756 ctgctggtctcgtcgacgtcgacggc 22781
||||||||||| |||||| |||||||
Sbjct: 562 ctgctggtctcatcgacgccgacggc 537
>ISPa11
Length = 1372
Score = 36.2 bits (18), Expect = 4.7
Identities = 24/26 (92%)
Strand = Plus / Plus
Query: 32735 cgatcatcgccaccgcggtggcggca 32760
|||||| ||||| |||||||||||||
Sbjct: 748 cgatcagcgccagcgcggtggcggca 773
>ISRtr1
Length = 1364
Score = 36.2 bits (18), Expect = 4.7
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 26838 cgggcaccgtcgacgtgc 26855
||||||||||||||||||
Sbjct: 300 cgggcaccgtcgacgtgc 317
>ISRsp1
Length = 3481
Score = 36.2 bits (18), Expect = 4.7
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 48503 gtcccgcggcccacctcg 48520
||||||||||||||||||
Sbjct: 3455 gtcccgcggcccacctcg 3472
>IS481v1
Length = 1043
Score = 36.2 bits (18), Expect = 4.7
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 29976 gcgcgcatcgcccaggcg 29993
||||||||||||||||||
Sbjct: 365 gcgcgcatcgcccaggcg 382
>IS1489v1
Length = 1898
Score = 36.2 bits (18), Expect = 4.7
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 10770 agcgcatccaggatgtcgggca 10791
||||||||||| ||||||||||
Sbjct: 162 agcgcatccagcatgtcgggca 141
>IS1400
Length = 1207
Score = 36.2 bits (18), Expect = 4.7
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 43015 ttcaccgagcaccagatc 43032
||||||||||||||||||
Sbjct: 95 ttcaccgagcaccagatc 112
>IS1122
Length = 1068
Score = 36.2 bits (18), Expect = 4.7
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 29827 cccgtcaccggggccgtg 29844
||||||||||||||||||
Sbjct: 454 cccgtcaccggggccgtg 471
>IS1121
Length = 1068
Score = 36.2 bits (18), Expect = 4.7
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 29827 cccgtcaccggggccgtg 29844
||||||||||||||||||
Sbjct: 454 cccgtcaccggggccgtg 471
>IS112
Length = 883
Score = 36.2 bits (18), Expect = 4.7
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 804 gctggtgacggtgctgcg 821
||||||||||||||||||
Sbjct: 122 gctggtgacggtgctgcg 139
>IS1066
Length = 1137
Score = 36.2 bits (18), Expect = 4.7
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 54928 tcgtcggcgatctcgtcg 54945
||||||||||||||||||
Sbjct: 223 tcgtcggcgatctcgtcg 206
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_20_length_48089_cov_80.7314_ID_5208
(48,089 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISCARN16 | IS21 | Metagenomic data from CARNOULES | 46 | 0.004 | |
| ISAzs29 | Tn3 | Azospirillum sp. | 42 | 0.066 | |
| IS1404 | IS3 | IS407 | Xanthomonas campestris | 42 | 0.066 |
| IS1403 | IS3 | IS407 | Xanthomonas campestris | 42 | 0.066 |
| ISAzo6 | IS1634 | Azoarcus sp. | 40 | 0.26 | |
| IS204 | ISL3 | - | Nocardia asteroides | 40 | 0.26 |
| IS1601 | IS256 | - | Mycobacterium avium | 40 | 0.26 |
| IS1600 | IS21 | - | Ralstonia eutropha | 40 | 0.26 |
| TnAs3 | Tn3 | Aeromonas salmonicida | 38 | 1.0 | |
| ISPa36 | IS21 | Pseudomonas aeruginosa | 38 | 1.0 | |
| ISAzs30 | IS21 | Azospirillum sp. | 38 | 1.0 | |
| ISAzs17 | Tn3 | Azospirillum sp. | 38 | 1.0 | |
| ISRel16 | IS21 | Rhizobium etli | 38 | 1.0 | |
| ISAcr3 | ISAs1 | Acidiphilium cryptum | 38 | 1.0 | |
| ISMex3 | IS256 | Methylobacterium extorquens | 38 | 1.0 | |
| ISCARN80 | IS110 | IS1111 | Metagenomic data from CARNOULES | 38 | 1.0 |
| ISAzo28 | IS110 | Azoarcus sp. | 38 | 1.0 | |
| ISAli8 | IS110 | Azospirillum lipoferum | 38 | 1.0 | |
| ISChy4 | IS21 | Carboxydothermus hydrogenoformans | 38 | 1.0 | |
| ISXo18 | IS3 | IS407 | Xanthomonas oryzae | 38 | 1.0 |
| ISBj4 | IS110 | IS1111 | Bradyrhizobium japonicum | 38 | 1.0 |
| ISBlo4 | IS30 | Bifidobacterium longum | 38 | 1.0 | |
| ISBlo1 | IS21 | Bifidobacterium longum | 38 | 1.0 | |
| ISMyma9 | IS21 | Mycobacterium marinum | 36 | 4.1 | |
| ISAra2 | ISKra4 | ISAzba1 | Agrobacterium radiobacter | 36 | 4.1 |
| ISMtu1 | IS256 | Mycobacterium tusciae | 36 | 4.1 | |
| ISMrh1 | IS256 | Mycobacterium rhodesiae | 36 | 4.1 | |
| ISRjo4 | IS256 | Rhodococcus jostii | 36 | 4.1 | |
| ISAzs3 | IS1380 | Azospirillum sp. | 36 | 4.1 | |
| ISGeob3 | IS5 | ISL2 | Geodermatophilus obscurus | 36 | 4.1 |
| ISGau7 | IS21 | Gemmatimonas aurantiaca | 36 | 4.1 | |
| ISPmar3 | IS5 | IS5 | Paracoccus marcusii | 36 | 4.1 |
| ISVsp7 | ISAs1 | Verrucomicrobium spinosum | 36 | 4.1 | |
| ISHwa13 | ISH3 | Haloquadratum walsbyi | 36 | 4.1 | |
| ISRhru4 | IS256 | Rhodospirillum rubrum | 36 | 4.1 | |
| ISMno15 | IS1182 | Methylobacterium nodulans | 36 | 4.1 | |
| ISMtsp8 | IS21 | Methylobacterium sp. | 36 | 4.1 | |
| ISPfr18 | ISL3 | Propionibacterium freudenreichii | 36 | 4.1 | |
| ISPfr9 | IS30 | Propionibacterium freudenreichii | 36 | 4.1 | |
| ISArsp6 | Tn3 | Arthrobacter sp. | 36 | 4.1 | |
| ISAau5 | ISNCY | Arthrobacter aurescens | 36 | 4.1 | |
| ISArsp5 | IS110 | Arthrobacter sp. | 36 | 4.1 | |
| ISMav6 | IS110 | Mycobacterium avium | 36 | 4.1 | |
| ISMgi4 | IS1182 | Mycobacterium gilvum | 36 | 4.1 | |
| ISCur1 | IS1380 | Corynebacterium urealyticum | 36 | 4.1 | |
| ISTro1 | IS1380 | Thiocapsa roseopersicina | 36 | 4.1 | |
| ISMesp2 | IS1380 | Mesorhizobium sp. | 36 | 4.1 | |
| ISBcl1 | IS1182 | Bacillus clausii | 36 | 4.1 | |
| ISAde3 | IS3 | IS407 | Anaeromyxobacter dehalogenans | 36 | 4.1 |
| ISMex13 | IS21 | Methylobacterium extorquens | 36 | 4.1 | |
| ISMex14 | IS256 | Methylobacterium extorquens | 36 | 4.1 | |
| ISMex4 | IS1380 | Methylobacterium extorquens | 36 | 4.1 | |
| ISThi1 | IS5 | IS5 | Thioalkalivibrio sp. | 36 | 4.1 |
| ISThsp16 | IS1182 | Thiomonas sp. | 36 | 4.1 | |
| ISAzo32 | IS630 | Azoarcus sp. | 36 | 4.1 | |
| ISAcma5 | IS5 | IS1031 | Acaryochloris marina | 36 | 4.1 |
| ISCARN22 | IS66 | Metagenomic data from CARNOULES | 36 | 4.1 | |
| ISAli20 | Tn3 | Azospirillum lipoferum | 36 | 4.1 | |
| ISAli18 | ISL3 | Azospirillum lipoferum | 36 | 4.1 | |
| ISFpe1 | IS66 | Fulvimarina pelagi | 36 | 4.1 | |
| ISFsp10 | IS66 | ISBst12 | Frankia sp. | 36 | 4.1 |
| ISHne3 | IS110 | Hyphomonas neptunium | 36 | 4.1 | |
| ISPre1 | IS5 | IS5 | Pseudomonas resinovorans | 36 | 4.1 |
| ISRhosp8 | IS110 | Rhodococcus sp. | 36 | 4.1 | |
| ISXau2 | IS3 | IS51 | Xanthobacter autotrophicus | 36 | 4.1 |
| ISMca2 | IS3 | IS3 | Methylococcus capsulatus | 36 | 4.1 |
| ISTth3 | IS1634 | Thermus thermophilus | 36 | 4.1 | |
| ISAzvi5 | IS4 | IS10 | Azotobacter vinelandii | 36 | 4.1 |
| ISApu1 | IS4 | ISH8 | Aeromonas punctata | 36 | 4.1 |
| ISSco3 | IS5 | IS1031 | Streptomyces coelicolor | 36 | 4.1 |
| ISRm9 | IS21 | - | Rhizobium meliloti | 36 | 4.1 |
| ISRm10-1 | IS630 | - | Sinorhizobium meliloti | 36 | 4.1 |
| ISPa4 | ISNCY | - | Pseudomonas aeruginosa | 36 | 4.1 |
| ISMt3 | IS21 | - | Mycobacterium tuberculosis | 36 | 4.1 |
| ISMk1 | ISNCY | - | Mycobacterium kansasii | 36 | 4.1 |
| ISMbo1 | IS21 | - | Mycobacterium bovis | 36 | 4.1 |
| ISH7B | ISNCY | Halobacterium sp. | 36 | 4.1 | |
| IS468A | IS5 | IS1031 | Streptomyces coelicolor | 36 | 4.1 |
| IS1549 | IS1634 | - | Mycobacterium smegmatis | 36 | 4.1 |
| IS1538 | IS607 | Mycobacterium tuberculosis | 36 | 4.1 |
>ISCARN16
Length = 2594
Score = 46.1 bits (23), Expect = 0.004
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 13041 aggctcgcgagcaggctcgtcgagccg 13067
|||||||||||||||| ||||||||||
Sbjct: 2385 aggctcgcgagcaggcgcgtcgagccg 2411
>ISAzs29
Length = 3897
Score = 42.1 bits (21), Expect = 0.066
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 7450 ctcggcgacctcgtcgaggag 7470
|||||||||||||||||||||
Sbjct: 2627 ctcggcgacctcgtcgaggag 2607
>IS1404
Length = 1203
Score = 42.1 bits (21), Expect = 0.066
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 44189 tgttcgagaacgacctgatca 44209
|||||||||||||||||||||
Sbjct: 286 tgttcgagaacgacctgatca 306
>IS1403
Length = 1203
Score = 42.1 bits (21), Expect = 0.066
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 44189 tgttcgagaacgacctgatca 44209
|||||||||||||||||||||
Sbjct: 286 tgttcgagaacgacctgatca 306
>ISAzo6
Length = 1925
Score = 40.1 bits (20), Expect = 0.26
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 19698 cgaggtcgacgtcaaggcga 19717
||||||||||||||||||||
Sbjct: 580 cgaggtcgacgtcaaggcga 599
>IS204
Length = 1452
Score = 40.1 bits (20), Expect = 0.26
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1419 cggccgcgccgaccccgctc 1438
||||||||||||||||||||
Sbjct: 960 cggccgcgccgaccccgctc 941
>IS1601
Length = 1417
Score = 40.1 bits (20), Expect = 0.26
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 12350 gcgggcgacgaggtcggcga 12369
||||||||||||||||||||
Sbjct: 794 gcgggcgacgaggtcggcga 775
>IS1600
Length = 2520
Score = 40.1 bits (20), Expect = 0.26
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 43773 gcttgccgtggacgatctcg 43792
||||||||||||||||||||
Sbjct: 973 gcttgccgtggacgatctcg 954
>TnAs3
Length = 18735
Score = 38.2 bits (19), Expect = 1.0
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 10738 cgtgcgccgcagctcgggc 10756
|||||||||||||||||||
Sbjct: 11042 cgtgcgccgcagctcgggc 11024
>ISPa36
Length = 2468
Score = 38.2 bits (19), Expect = 1.0
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 35501 cctgccgctgctcgagatcgcca 35523
||||||||||| |||||||||||
Sbjct: 161 cctgccgctgcgcgagatcgcca 183
Score = 38.2 bits (19), Expect = 1.0
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 25467 gtgggtgatgcgatccagc 25485
|||||||||||||||||||
Sbjct: 2277 gtgggtgatgcgatccagc 2259
>ISAzs30
Length = 2365
Score = 38.2 bits (19), Expect = 1.0
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 17077 gacggcctcggcgccggag 17095
|||||||||||||||||||
Sbjct: 2260 gacggcctcggcgccggag 2242
Score = 36.2 bits (18), Expect = 4.1
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 13995 tcctcgcccagcagggcg 14012
||||||||||||||||||
Sbjct: 1598 tcctcgcccagcagggcg 1581
>ISAzs17
Length = 7252
Score = 38.2 bits (19), Expect = 1.0
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 8421 ccgtcaccccagacggcag 8439
|||||||||||||||||||
Sbjct: 6244 ccgtcaccccagacggcag 6226
>ISRel16
Length = 2597
Score = 38.2 bits (19), Expect = 1.0
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 18920 cgcaccgtcgagggcgccg 18938
|||||||||||||||||||
Sbjct: 292 cgcaccgtcgagggcgccg 274
>ISAcr3
Length = 1232
Score = 38.2 bits (19), Expect = 1.0
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 39015 ctcgtacgccgccatcagc 39033
|||||||||||||||||||
Sbjct: 1113 ctcgtacgccgccatcagc 1131
>ISMex3
Length = 1399
Score = 38.2 bits (19), Expect = 1.0
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 12242 gcgggccccggcgcgcagc 12260
|||||||||||||||||||
Sbjct: 185 gcgggccccggcgcgcagc 167
>ISCARN80
Length = 1409
Score = 38.2 bits (19), Expect = 1.0
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 36869 catcgccgaacggatgcccgaga 36891
||||||| |||||||||||||||
Sbjct: 557 catcgccaaacggatgcccgaga 579
>ISAzo28
Length = 1486
Score = 38.2 bits (19), Expect = 1.0
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 44034 gccgcgcagggcttcgagc 44052
|||||||||||||||||||
Sbjct: 869 gccgcgcagggcttcgagc 851
>ISAli8
Length = 1151
Score = 38.2 bits (19), Expect = 1.0
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 22782 gccgtcgccaagctcgtcg 22800
|||||||||||||||||||
Sbjct: 854 gccgtcgccaagctcgtcg 872
>ISChy4
Length = 2172
Score = 38.2 bits (19), Expect = 1.0
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 12314 agcggcatacggcagggac 12332
|||||||||||||||||||
Sbjct: 439 agcggcatacggcagggac 421
>ISXo18
Length = 1189
Score = 38.2 bits (19), Expect = 1.0
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 44187 ggtgttcgagaacgacctgatca 44209
||||||| |||||||||||||||
Sbjct: 277 ggtgttccagaacgacctgatca 299
>ISBj4
Length = 1576
Score = 38.2 bits (19), Expect = 1.0
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 41387 gatcgccgtgatcggcatc 41405
|||||||||||||||||||
Sbjct: 99 gatcgccgtgatcggcatc 117
>ISBlo4
Length = 1399
Score = 38.2 bits (19), Expect = 1.0
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 7446 gttcctcggcgacctcgtcgagg 7468
|||||||||||||| ||||||||
Sbjct: 1246 gttcctcggcgaccgcgtcgagg 1224
>ISBlo1
Length = 2590
Score = 38.2 bits (19), Expect = 1.0
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 24363 ccgtcggcaccgtcaagagccac 24385
|||||||||||| ||||||||||
Sbjct: 2057 ccgtcggcaccggcaagagccac 2079
>ISMyma9
Length = 2162
Score = 36.2 bits (18), Expect = 4.1
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 5041 ccatcgcctcggcgatga 5058
||||||||||||||||||
Sbjct: 1963 ccatcgcctcggcgatga 1980
>ISAra2
Length = 2535
Score = 36.2 bits (18), Expect = 4.1
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 35104 ccatcgcgaccgagacgg 35121
||||||||||||||||||
Sbjct: 1156 ccatcgcgaccgagacgg 1173
>ISMtu1
Length = 1474
Score = 36.2 bits (18), Expect = 4.1
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 16813 ctcctcgccgacctgggc 16830
||||||||||||||||||
Sbjct: 576 ctcctcgccgacctgggc 559
>ISMrh1
Length = 1472
Score = 36.2 bits (18), Expect = 4.1
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 12953 gaggtggatgccgtcgac 12970
||||||||||||||||||
Sbjct: 692 gaggtggatgccgtcgac 675
>ISRjo4
Length = 1458
Score = 36.2 bits (18), Expect = 4.1
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 12953 gaggtggatgccgtcgac 12970
||||||||||||||||||
Sbjct: 669 gaggtggatgccgtcgac 652
>ISAzs3
Length = 1613
Score = 36.2 bits (18), Expect = 4.1
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 45133 cgccacctcccgcagcac 45150
||||||||||||||||||
Sbjct: 228 cgccacctcccgcagcac 211
>ISGeob3
Length = 970
Score = 36.2 bits (18), Expect = 4.1
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 11589 ccggcggccttgccggcc 11606
||||||||||||||||||
Sbjct: 450 ccggcggccttgccggcc 433
>ISGau7
Length = 2510
Score = 36.2 bits (18), Expect = 4.1
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 14655 gcaggcgctcggccacgc 14672
||||||||||||||||||
Sbjct: 2021 gcaggcgctcggccacgc 2038
>ISPmar3
Length = 1282
Score = 36.2 bits (18), Expect = 4.1
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 1705 gccggcgaactgcttgaacagc 1726
|||| |||||||||||||||||
Sbjct: 467 gccgtcgaactgcttgaacagc 446
>ISVsp7
Length = 1237
Score = 36.2 bits (18), Expect = 4.1
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 9369 caggtgcagcgccgccacgatg 9390
|||||||||||| |||||||||
Sbjct: 902 caggtgcagcgcagccacgatg 923
>ISHwa13
Length = 1459
Score = 36.2 bits (18), Expect = 4.1
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 3002 cgtcgtagtggtcgccgt 3019
||||||||||||||||||
Sbjct: 444 cgtcgtagtggtcgccgt 427
>ISRhru4
Length = 1411
Score = 36.2 bits (18), Expect = 4.1
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 24391 ccgggcgctcagcgccctgcgc 24412
|||||||||| |||||||||||
Sbjct: 55 ccgggcgctccgcgccctgcgc 34
>ISMno15
Length = 1561
Score = 36.2 bits (18), Expect = 4.1
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 19732 cgcctcggcgaggcggac 19749
||||||||||||||||||
Sbjct: 156 cgcctcggcgaggcggac 139
>ISMtsp8
Length = 2371
Score = 36.2 bits (18), Expect = 4.1
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 30949 cgcgcgacctggtcgccg 30966
||||||||||||||||||
Sbjct: 1346 cgcgcgacctggtcgccg 1329
>ISPfr18
Length = 1437
Score = 36.2 bits (18), Expect = 4.1
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 3722 tcgggcagctgctcgagg 3739
||||||||||||||||||
Sbjct: 187 tcgggcagctgctcgagg 204
>ISPfr9
Length = 1484
Score = 36.2 bits (18), Expect = 4.1
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 17373 ccgagacggttgcggcct 17390
||||||||||||||||||
Sbjct: 166 ccgagacggttgcggcct 149
>ISArsp6
Length = 26712
Score = 36.2 bits (18), Expect = 4.1
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 13424 gtggccgacaccatccgg 13441
||||||||||||||||||
Sbjct: 12564 gtggccgacaccatccgg 12581
>ISAau5
Length = 3989
Score = 36.2 bits (18), Expect = 4.1
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 37190 cggcaccgcgccggaccg 37207
||||||||||||||||||
Sbjct: 2412 cggcaccgcgccggaccg 2429
>ISArsp5
Length = 1426
Score = 36.2 bits (18), Expect = 4.1
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 38817 gaacagctcgcggaactg 38834
||||||||||||||||||
Sbjct: 591 gaacagctcgcggaactg 608
>ISMav6
Length = 1472
Score = 36.2 bits (18), Expect = 4.1
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 2577 ggtgcgcggcgtgaaccg 2594
||||||||||||||||||
Sbjct: 664 ggtgcgcggcgtgaaccg 681
>ISMgi4
Length = 1772
Score = 36.2 bits (18), Expect = 4.1
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 19550 cgtccaccaacccggccc 19567
||||||||||||||||||
Sbjct: 699 cgtccaccaacccggccc 682
>ISCur1
Length = 1627
Score = 36.2 bits (18), Expect = 4.1
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 14594 gggccgaggaccggatcc 14611
||||||||||||||||||
Sbjct: 1197 gggccgaggaccggatcc 1214
>ISTro1
Length = 1735
Score = 36.2 bits (18), Expect = 4.1
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 3283 tggccaggtccgtcgtcg 3300
||||||||||||||||||
Sbjct: 438 tggccaggtccgtcgtcg 421
>ISMesp2
Length = 1618
Score = 36.2 bits (18), Expect = 4.1
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 46836 cgttcgtcgtggtggacgttga 46857
||||||||||||||| ||||||
Sbjct: 655 cgttcgtcgtggtggccgttga 634
>ISBcl1
Length = 1536
Score = 36.2 bits (18), Expect = 4.1
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 44941 cgttcatcccgtcatgcc 44958
||||||||||||||||||
Sbjct: 962 cgttcatcccgtcatgcc 979
>ISAde3
Length = 1183
Score = 36.2 bits (18), Expect = 4.1
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 1127 agcgggtcgacctccggg 1144
||||||||||||||||||
Sbjct: 454 agcgggtcgacctccggg 471
>ISMex13
Length = 2359
Score = 36.2 bits (18), Expect = 4.1
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 47799 tcgcggcggcgaaccgct 47816
||||||||||||||||||
Sbjct: 460 tcgcggcggcgaaccgct 443
>ISMex14
Length = 1381
Score = 36.2 bits (18), Expect = 4.1
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 16387 ctcggccaggctgcgcag 16404
||||||||||||||||||
Sbjct: 196 ctcggccaggctgcgcag 179
>ISMex4
Length = 1615
Score = 36.2 bits (18), Expect = 4.1
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 46836 cgttcgtcgtggtggacgttga 46857
||||||||||||||| ||||||
Sbjct: 655 cgttcgtcgtggtgggcgttga 634
>ISThi1
Length = 1191
Score = 36.2 bits (18), Expect = 4.1
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 11838 gccgcgagcacctcgcgg 11855
||||||||||||||||||
Sbjct: 1078 gccgcgagcacctcgcgg 1061
>ISThsp16
Length = 1602
Score = 36.2 bits (18), Expect = 4.1
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 4490 cttgatctgggcgatccggccc 4511
|||||||||||||||| |||||
Sbjct: 195 cttgatctgggcgatctggccc 216
>ISAzo32
Length = 1100
Score = 36.2 bits (18), Expect = 4.1
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 870 cccgcaccgcctgcgcga 887
||||||||||||||||||
Sbjct: 309 cccgcaccgcctgcgcga 292
>ISAcma5
Length = 898
Score = 36.2 bits (18), Expect = 4.1
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 22034 cgaggtctacctccaggt 22051
||||||||||||||||||
Sbjct: 171 cgaggtctacctccaggt 154
>ISCARN22
Length = 2674
Score = 36.2 bits (18), Expect = 4.1
Identities = 27/30 (90%)
Strand = Plus / Minus
Query: 7239 ccgcgccgaccccggcgaccacccccaggc 7268
||||||| ||||||||||| ||| ||||||
Sbjct: 2126 ccgcgcccaccccggcgacgacctccaggc 2097
>ISAli20
Length = 3828
Score = 36.2 bits (18), Expect = 4.1
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 25092 cgtcatccgagccgacggcacc 25113
|||||||| |||||||||||||
Sbjct: 2628 cgtcatcctagccgacggcacc 2649
>ISAli18
Length = 1752
Score = 36.2 bits (18), Expect = 4.1
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 10686 tgccgctcgtcgccacgacggc 10707
|||||||||||||| |||||||
Sbjct: 1341 tgccgctcgtcgccgcgacggc 1320
>ISFpe1
Length = 2489
Score = 36.2 bits (18), Expect = 4.1
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 5269 tcgtgccgtcaccggcga 5286
||||||||||||||||||
Sbjct: 2207 tcgtgccgtcaccggcga 2190
>ISFsp10
Length = 1713
Score = 36.2 bits (18), Expect = 4.1
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 2737 tgcacgaccgcgaagtcg 2754
||||||||||||||||||
Sbjct: 1485 tgcacgaccgcgaagtcg 1468
>ISHne3
Length = 1172
Score = 36.2 bits (18), Expect = 4.1
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 46895 tggcgggctttccggccgtccg 46916
|||||||||||||||| |||||
Sbjct: 1044 tggcgggctttccggctgtccg 1023
>ISPre1
Length = 1192
Score = 36.2 bits (18), Expect = 4.1
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 11838 gccgcgagcacctcgcgg 11855
||||||||||||||||||
Sbjct: 1079 gccgcgagcacctcgcgg 1062
>ISRhosp8
Length = 1439
Score = 36.2 bits (18), Expect = 4.1
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 17135 agctcggcgagggcctcg 17152
||||||||||||||||||
Sbjct: 619 agctcggcgagggcctcg 602
>ISXau2
Length = 1238
Score = 36.2 bits (18), Expect = 4.1
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 37773 ggcacagctcgtcgccga 37790
||||||||||||||||||
Sbjct: 845 ggcacagctcgtcgccga 862
>ISMca2
Length = 1308
Score = 36.2 bits (18), Expect = 4.1
Identities = 27/30 (90%)
Strand = Plus / Plus
Query: 27723 ctgcgccggcgggaggttggacagggccgc 27752
|||||||||| |||| |||||||||||||
Sbjct: 466 ctgcgccggcaagaggatggacagggccgc 495
>ISTth3
Length = 1682
Score = 36.2 bits (18), Expect = 4.1
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 36234 cccaccgagctgctcctg 36251
||||||||||||||||||
Sbjct: 261 cccaccgagctgctcctg 278
>ISAzvi5
Length = 1328
Score = 36.2 bits (18), Expect = 4.1
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 14368 ctcgaggccctggcggcg 14385
||||||||||||||||||
Sbjct: 534 ctcgaggccctggcggcg 551
>ISApu1
Length = 1384
Score = 36.2 bits (18), Expect = 4.1
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 38988 gagcccgttgtgcatgag 39005
||||||||||||||||||
Sbjct: 582 gagcccgttgtgcatgag 599
>ISSco3
Length = 1101
Score = 36.2 bits (18), Expect = 4.1
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 41332 agggtggcgccgtgttcg 41349
||||||||||||||||||
Sbjct: 829 agggtggcgccgtgttcg 812
>ISRm9
Length = 2798
Score = 36.2 bits (18), Expect = 4.1
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 24424 ggaggtcacggcatgagcccca 24445
||||||||||||||||| ||||
Sbjct: 1684 ggaggtcacggcatgagaccca 1705
>ISRm10-1
Length = 1042
Score = 36.2 bits (18), Expect = 4.1
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 28092 ggcgccggtgaaggtcgt 28109
||||||||||||||||||
Sbjct: 648 ggcgccggtgaaggtcgt 631
>ISPa4
Length = 2564
Score = 36.2 bits (18), Expect = 4.1
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 41446 cgctcggcctcctgatgg 41463
||||||||||||||||||
Sbjct: 2063 cgctcggcctcctgatgg 2080
>ISMt3
Length = 2213
Score = 36.2 bits (18), Expect = 4.1
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 41602 gggactcccgggctgaca 41619
||||||||||||||||||
Sbjct: 1529 gggactcccgggctgaca 1512
>ISMk1
Length = 947
Score = 36.2 bits (18), Expect = 4.1
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 9108 catcgtctcggtgagggc 9125
||||||||||||||||||
Sbjct: 758 catcgtctcggtgagggc 775
>ISMbo1
Length = 2212
Score = 36.2 bits (18), Expect = 4.1
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 41602 gggactcccgggctgaca 41619
||||||||||||||||||
Sbjct: 1529 gggactcccgggctgaca 1512
>ISH7B
Length = 2924
Score = 36.2 bits (18), Expect = 4.1
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 16149 ccgcctcgaagatgtcca 16166
||||||||||||||||||
Sbjct: 1245 ccgcctcgaagatgtcca 1262
Score = 36.2 bits (18), Expect = 4.1
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 1369 gacgatgtcggtcgcgcc 1386
||||||||||||||||||
Sbjct: 1968 gacgatgtcggtcgcgcc 1951
>IS468A
Length = 1097
Score = 36.2 bits (18), Expect = 4.1
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 41332 agggtggcgccgtgttcg 41349
||||||||||||||||||
Sbjct: 827 agggtggcgccgtgttcg 810
>IS1549
Length = 1640
Score = 36.2 bits (18), Expect = 4.1
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 17703 gttcgactcagccgccga 17720
||||||||||||||||||
Sbjct: 394 gttcgactcagccgccga 411
>IS1538
Length = 2090
Score = 36.2 bits (18), Expect = 4.1
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 45625 gctgctgcggacgctgga 45642
||||||||||||||||||
Sbjct: 1301 gctgctgcggacgctgga 1284
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_21_length_46544_cov_64.2509_ID_5210
(46,544 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| IS1557 | ISL3 | Mycobacterium tuberculosis | 44 | 0.016 | |
| ISMyca1 | IS1634 | Mycobacterium canettii | 44 | 0.016 | |
| IS2001 | ISL3 | - | Bifidobacterium lactis | 44 | 0.016 |
| ISCARN18 | IS110 | IS1111 | Metagenomic data from CARNOULES | 42 | 0.064 |
| IS1553 | IS256 | Mycobacterium tuberculosis | 42 | 0.064 | |
| ISTesp2 | ISL3 | Terrabacter sp. | 42 | 0.064 | |
| TnXo19 | Tn3 | Xanthomonas oryzae | 40 | 0.25 | |
| ISMtu1 | IS256 | Mycobacterium tusciae | 40 | 0.25 | |
| ISPfr13 | IS3 | IS51 | Propionibacterium freudenreichii | 40 | 0.25 |
| ISThsp13 | IS1380 | Thiomonas sp. | 40 | 0.25 | |
| IS2112 | IS110 | - | Rhodococcus rhodochrous | 40 | 0.25 |
| IS1646 | IS5 | IS5 | Xanthomonas campestris | 40 | 0.25 |
| ISHas1 | IS200/IS605 | IS605 | Halonotius sp. | 38 | 1.0 |
| TnAs1 | Tn3 | Aeromonas salmonicida | 38 | 1.0 | |
| ISMlu11 | IS256 | Micrococcus luteus | 38 | 1.0 | |
| ISPebe1 | IS256 | Pelagibaca bermudensis | 38 | 1.0 | |
| ISPa43 | Tn3 | Pseudomonas aeruginosa | 38 | 1.0 | |
| ISSisp2 | IS5 | IS903 | Silicibacter sp. | 38 | 1.0 |
| ISGob5 | ISAs1 | Gemmata obscuriglobus | 38 | 1.0 | |
| ISAzo10 | IS3 | IS3 | Azoarcus sp. | 38 | 1.0 |
| ISAfe9 | IS21 | Acidithiobacillus ferrooxidans | 38 | 1.0 | |
| ISMno3 | IS66 | ISBst12 | Methylobacterium nodulans | 38 | 1.0 |
| ISLxc1 | IS21 | Leifsonia xyli | 38 | 1.0 | |
| ISPst3 | IS21 | Pseudomonas stutzeri | 38 | 1.0 | |
| ISSav3 | IS701 | Streptomyces avermitilis | 38 | 1.0 | |
| ISFsp3 | IS21 | Frankia sp. | 38 | 1.0 | |
| ISRsp2 | IS21 | - | Rhizobium sp. | 38 | 1.0 |
| IS1511 | IS256 | - | Mycobacterium gordonae | 38 | 1.0 |
| ISAs21 | IS66 | ISBst12 | Aeromonas salmonicida | 36 | 4.0 |
| ISTni1 | ISKra4 | ISKra4 | Thioalkalivibrio nitratireducens | 36 | 4.0 |
| ISMal1 | ISKra4 | ISAzba1 | Mesorhizobium alhagi | 36 | 4.0 |
| ISMva4 | IS256 | Mycobacterium vanbaalenii | 36 | 4.0 | |
| ISSer2 | IS256 | Saccharopolyspora erythraea | 36 | 4.0 | |
| ISMrh1 | IS256 | Mycobacterium rhodesiae | 36 | 4.0 | |
| ISNml3 | IS1182 | Nakamurella multipartita | 36 | 4.0 | |
| ISPse1 | IS1182 | Paracoccus seriniphilus | 36 | 4.0 | |
| ISHwa5 | IS4 | ISH8 | Haloquadratum walsbyi | 36 | 4.0 |
| ISHla3 | IS5 | ISH1 | Halorubrum lacusprofundi | 36 | 4.0 |
| ISMafe1 | IS5 | IS5 | Mariprofundus ferrooxydans | 36 | 4.0 |
| ISScl2 | ISAzo13 | Streptomyces clavuligerus | 36 | 4.0 | |
| ISRop2 | ISAzo13 | Rhodococcus opacus | 36 | 4.0 | |
| ISMno31 | IS3 | IS150 | Methylobacterium nodulans | 36 | 4.0 |
| ISPfr3 | ISL3 | Propionibacterium freudenreichii | 36 | 4.0 | |
| ISMaa1 | IS1380 | Marine actinobacterium | 36 | 4.0 | |
| ISUnCu12 | IS1380 | Uncultured marine microorganism | 36 | 4.0 | |
| ISSyth1 | IS1182 | Symbiobacterium thermophilum | 36 | 4.0 | |
| ISAzo1 | IS1182 | Azoarcus sp. | 36 | 4.0 | |
| ISMex24 | ISL3 | Methylobacterium extorquens | 36 | 4.0 | |
| ISCARN116 | IS3 | IS407 | Metagenomic data from CARNOULES | 36 | 4.0 |
| ISAnsp5 | IS21 | Anaeromyxobacter sp. | 36 | 4.0 | |
| ISThsp5 | IS21 | Thiomonas sp. | 36 | 4.0 | |
| ISSav7 | IS481 | Streptomyces avermitilis | 36 | 4.0 | |
| ISKrh1 | IS481 | Kocuria rhizophila | 36 | 4.0 | |
| ISAnsp1 | IS1182 | Anaeromyxobacter sp. | 36 | 4.0 | |
| ISFpe1 | IS66 | Fulvimarina pelagi | 36 | 4.0 | |
| ISMno2 | IS66 | ISBst12 | Methylobacterium nodulans | 36 | 4.0 |
| ISDge12 | IS701 | Deinococcus geothermalis | 36 | 4.0 | |
| ISMsm6 | IS1634 | Mycobacterium smegmatis | 36 | 4.0 | |
| ISHar2 | IS3 | IS3 | Herminiimonas arsenicoxydans | 36 | 4.0 |
| ISRhosp5 | IS3 | IS51 | Rhodococcus sp. | 36 | 4.0 |
| ISAzo8 | ISAs1 | Azoarcus sp. | 36 | 4.0 | |
| ISTth3 | IS1634 | Thermus thermophilus | 36 | 4.0 | |
| ISNmo2 | IS4 | IS4 | Nitrococcus mobilis | 36 | 4.0 |
| ISMva1 | IS1595 | ISSod11 | Mycobacterium vanbaalenii | 36 | 4.0 |
| ISLxx5 | IS30 | Leifsonia xyli | 36 | 4.0 | |
| ISLxx2 | IS110 | Leifsonia xyli | 36 | 4.0 | |
| ISMlo3 | IS110 | IS1111 | Mesorhizobium loti | 36 | 4.0 |
| ISMav1 | IS21 | - | Mycobacterium avium | 36 | 4.0 |
| IS4811 | IS5 | IS1031 | Streptomyces lividans | 36 | 4.0 |
| ISSme3 | IS66 | Sinorhizobium medicae | 36 | 4.0 | |
| IS1612 | IS21 | - | Mycobacterium avium | 36 | 4.0 |
| IS1137 | IS3 | IS51 | Mycobacterium smegmatis | 36 | 4.0 |
>IS1557
Length = 1509
Score = 44.1 bits (22), Expect = 0.016
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 22929 atcgccccgacggtgcgccacgcgacccgc 22958
|||||||||||||||||||| |||| ||||
Sbjct: 571 atcgccccgacggtgcgccaggcgatccgc 542
>ISMyca1
Length = 1968
Score = 44.1 bits (22), Expect = 0.016
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 38778 ggccatcgccgacgccacccgccgcc 38803
|||||||||||| |||||||||||||
Sbjct: 1201 ggccatcgccgaagccacccgccgcc 1226
>IS2001
Length = 1406
Score = 44.1 bits (22), Expect = 0.016
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 22617 tgcacgacgtggaacgggtcga 22638
||||||||||||||||||||||
Sbjct: 864 tgcacgacgtggaacgggtcga 843
>ISCARN18
Length = 1561
Score = 42.1 bits (21), Expect = 0.064
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 35141 ccggtgatctcggcgatgcgccgca 35165
|||| ||||||||||||||||||||
Sbjct: 883 ccggggatctcggcgatgcgccgca 859
>IS1553
Length = 1406
Score = 42.1 bits (21), Expect = 0.064
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 42545 cgctcccgcgtcgtggggatc 42565
|||||||||||||||||||||
Sbjct: 1169 cgctcccgcgtcgtggggatc 1189
>ISTesp2
Length = 1397
Score = 42.1 bits (21), Expect = 0.064
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 22929 atcgccccgacggtgcgccacgcga 22953
|||||||||||||||||||| ||||
Sbjct: 521 atcgccccgacggtgcgccaggcga 497
>TnXo19
Length = 18767
Score = 40.1 bits (20), Expect = 0.25
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 20009 cgatggccacgttgatcaga 20028
||||||||||||||||||||
Sbjct: 16139 cgatggccacgttgatcaga 16120
>ISMtu1
Length = 1474
Score = 40.1 bits (20), Expect = 0.25
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 37784 aggccgagatcgacgcggcgtgcg 37807
|||||||||||| |||||||||||
Sbjct: 287 aggccgagatcgccgcggcgtgcg 310
>ISPfr13
Length = 1383
Score = 40.1 bits (20), Expect = 0.25
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 37782 ccaggccgagatcgacgcgg 37801
||||||||||||||||||||
Sbjct: 202 ccaggccgagatcgacgcgg 221
>ISThsp13
Length = 1583
Score = 40.1 bits (20), Expect = 0.25
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 7630 tgctcggccagggcgcgctcagcg 7653
|||||||||||||| |||||||||
Sbjct: 912 tgctcggccagggcccgctcagcg 889
>IS2112
Length = 1415
Score = 40.1 bits (20), Expect = 0.25
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 41891 gccgcggacctcgcgctgttgacc 41914
|||||||| |||||||||||||||
Sbjct: 588 gccgcggaactcgcgctgttgacc 611
>IS1646
Length = 1158
Score = 40.1 bits (20), Expect = 0.25
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 19770 ccgtgtcgagccggccaggtcggc 19793
|||||||| |||||||||||||||
Sbjct: 194 ccgtgtcgggccggccaggtcggc 217
>ISHas1
Length = 1955
Score = 38.2 bits (19), Expect = 1.0
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 29469 gtggccgacgacgccgatc 29487
|||||||||||||||||||
Sbjct: 806 gtggccgacgacgccgatc 824
>TnAs1
Length = 6694
Score = 38.2 bits (19), Expect = 1.0
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 4867 ttgtcgttgagcgccttgccctg 4889
|||||||||| ||||||||||||
Sbjct: 4671 ttgtcgttgatcgccttgccctg 4649
>ISMlu11
Length = 1434
Score = 38.2 bits (19), Expect = 1.0
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 45492 ctgccggaggcgatcgagg 45510
|||||||||||||||||||
Sbjct: 829 ctgccggaggcgatcgagg 847
>ISPebe1
Length = 1363
Score = 38.2 bits (19), Expect = 1.0
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 20595 gcgctcgtcgatctcctcg 20613
|||||||||||||||||||
Sbjct: 522 gcgctcgtcgatctcctcg 504
>ISPa43
Length = 19903
Score = 38.2 bits (19), Expect = 1.0
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 16899 cctgcagcacctgctcgtg 16917
|||||||||||||||||||
Sbjct: 8349 cctgcagcacctgctcgtg 8331
>ISSisp2
Length = 1050
Score = 38.2 bits (19), Expect = 1.0
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 6026 ccgacaggtcgcggaggtc 6044
|||||||||||||||||||
Sbjct: 909 ccgacaggtcgcggaggtc 927
>ISGob5
Length = 1308
Score = 38.2 bits (19), Expect = 1.0
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 13450 ggcgatgtccttctgggtg 13468
|||||||||||||||||||
Sbjct: 715 ggcgatgtccttctgggtg 697
>ISAzo10
Length = 1669
Score = 38.2 bits (19), Expect = 1.0
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 18109 gacaccgcctacgtggagtcgct 18131
|||| ||||||||||||||||||
Sbjct: 1274 gacaacgcctacgtggagtcgct 1296
>ISAfe9
Length = 2503
Score = 38.2 bits (19), Expect = 1.0
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 9926 gccatgaccgtggccgccg 9944
|||||||||||||||||||
Sbjct: 2257 gccatgaccgtggccgccg 2275
>ISMno3
Length = 1364
Score = 38.2 bits (19), Expect = 1.0
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 17611 caccttccgctgcaccacc 17629
|||||||||||||||||||
Sbjct: 1210 caccttccgctgcaccacc 1192
>ISLxc1
Length = 3533
Score = 38.2 bits (19), Expect = 1.0
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 17020 gcgatccgggtcgccgagc 17038
|||||||||||||||||||
Sbjct: 2842 gcgatccgggtcgccgagc 2860
>ISPst3
Length = 2606
Score = 38.2 bits (19), Expect = 1.0
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 45598 tgcgcaacggcgcgccctt 45616
|||||||||||||||||||
Sbjct: 1284 tgcgcaacggcgcgccctt 1302
>ISSav3
Length = 1400
Score = 38.2 bits (19), Expect = 1.0
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 38772 ccgccgggccatcgccgac 38790
|||||||||||||||||||
Sbjct: 611 ccgccgggccatcgccgac 629
>ISFsp3
Length = 2209
Score = 38.2 bits (19), Expect = 1.0
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 32323 ggccgaggaggacgacgtt 32341
|||||||||||||||||||
Sbjct: 1698 ggccgaggaggacgacgtt 1680
>ISRsp2
Length = 2623
Score = 38.2 bits (19), Expect = 1.0
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 12786 cgcggggcggtcgaccgtctcggccga 12812
|||| |||||||||||| |||||||||
Sbjct: 425 cgcgcggcggtcgaccggctcggccga 399
>IS1511
Length = 1278
Score = 38.2 bits (19), Expect = 1.0
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 4914 ggcgagcaggtcggcgcgg 4932
|||||||||||||||||||
Sbjct: 1023 ggcgagcaggtcggcgcgg 1005
>ISAs21
Length = 1530
Score = 36.2 bits (18), Expect = 4.0
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 25336 tcgcttggccgtctccac 25353
||||||||||||||||||
Sbjct: 1414 tcgcttggccgtctccac 1397
>ISTni1
Length = 2377
Score = 36.2 bits (18), Expect = 4.0
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 15760 gcggtggcggcggtcgtc 15777
||||||||||||||||||
Sbjct: 904 gcggtggcggcggtcgtc 887
>ISMal1
Length = 2308
Score = 36.2 bits (18), Expect = 4.0
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 6917 gcgccgcatcgcgaccac 6934
||||||||||||||||||
Sbjct: 2158 gcgccgcatcgcgaccac 2141
>ISMva4
Length = 1458
Score = 36.2 bits (18), Expect = 4.0
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 32197 ccgatgcggcgctgcccc 32214
||||||||||||||||||
Sbjct: 427 ccgatgcggcgctgcccc 410
>ISSer2
Length = 1473
Score = 36.2 bits (18), Expect = 4.0
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 45493 tgccggaggcgatcgagg 45510
||||||||||||||||||
Sbjct: 860 tgccggaggcgatcgagg 877
>ISMrh1
Length = 1472
Score = 36.2 bits (18), Expect = 4.0
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 21648 gtcgcgaagatcgacgacgacg 21669
||||||||||||| ||||||||
Sbjct: 1098 gtcgcgaagatcgtcgacgacg 1119
>ISNml3
Length = 1798
Score = 36.2 bits (18), Expect = 4.0
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 18699 gaaccggctcttcgacgcggtc 18720
||||||| ||||||||||||||
Sbjct: 423 gaaccggatcttcgacgcggtc 444
>ISPse1
Length = 1653
Score = 36.2 bits (18), Expect = 4.0
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 42820 cgacgacctgcacgccgt 42837
||||||||||||||||||
Sbjct: 931 cgacgacctgcacgccgt 948
>ISHwa5
Length = 2256
Score = 36.2 bits (18), Expect = 4.0
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 42860 aacgacatcggctgtgtc 42877
||||||||||||||||||
Sbjct: 1842 aacgacatcggctgtgtc 1825
>ISHla3
Length = 929
Score = 36.2 bits (18), Expect = 4.0
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 9424 gtcctgcccgctgacgaa 9441
||||||||||||||||||
Sbjct: 469 gtcctgcccgctgacgaa 452
>ISMafe1
Length = 1745
Score = 36.2 bits (18), Expect = 4.0
Identities = 24/26 (92%)
Strand = Plus / Plus
Query: 38056 gagctgctcgcggaggccggcatgcc 38081
|||||| | |||||||||||||||||
Sbjct: 938 gagctgatggcggaggccggcatgcc 963
>ISScl2
Length = 1819
Score = 36.2 bits (18), Expect = 4.0
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 775 ccctggcgggtgagctcg 792
||||||||||||||||||
Sbjct: 469 ccctggcgggtgagctcg 452
>ISRop2
Length = 2171
Score = 36.2 bits (18), Expect = 4.0
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 35299 ggcgtcgaggagggcggcggcg 35320
|||| |||||||||||||||||
Sbjct: 2115 ggcggcgaggagggcggcggcg 2094
>ISMno31
Length = 1510
Score = 36.2 bits (18), Expect = 4.0
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 33342 gtcggccgccgtgacgac 33359
||||||||||||||||||
Sbjct: 836 gtcggccgccgtgacgac 819
>ISPfr3
Length = 1457
Score = 36.2 bits (18), Expect = 4.0
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 11942 ctgttcgccgacgacgcc 11959
||||||||||||||||||
Sbjct: 1077 ctgttcgccgacgacgcc 1094
>ISMaa1
Length = 1650
Score = 36.2 bits (18), Expect = 4.0
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 21166 tcgtctcgacaccgagcgcggc 21187
|||||||||| |||||||||||
Sbjct: 635 tcgtctcgaccccgagcgcggc 656
>ISUnCu12
Length = 1597
Score = 36.2 bits (18), Expect = 4.0
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 18063 gctgcgccaggccgcgcc 18080
||||||||||||||||||
Sbjct: 1267 gctgcgccaggccgcgcc 1284
>ISSyth1
Length = 1527
Score = 36.2 bits (18), Expect = 4.0
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 45300 cctcccgaggagccggga 45317
||||||||||||||||||
Sbjct: 768 cctcccgaggagccggga 785
>ISAzo1
Length = 1545
Score = 36.2 bits (18), Expect = 4.0
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 41220 gcgcgcgccaaggagcgc 41237
||||||||||||||||||
Sbjct: 692 gcgcgcgccaaggagcgc 709
>ISMex24
Length = 1677
Score = 36.2 bits (18), Expect = 4.0
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 29433 gatgacgcgcaggagcgt 29450
||||||||||||||||||
Sbjct: 512 gatgacgcgcaggagcgt 495
>ISCARN116
Length = 1260
Score = 36.2 bits (18), Expect = 4.0
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 31404 tcgctcgtcgcggcgcgc 31421
||||||||||||||||||
Sbjct: 827 tcgctcgtcgcggcgcgc 844
>ISAnsp5
Length = 2192
Score = 36.2 bits (18), Expect = 4.0
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 616 acggccgcgacgtcgtcg 633
||||||||||||||||||
Sbjct: 1165 acggccgcgacgtcgtcg 1182
>ISThsp5
Length = 2652
Score = 36.2 bits (18), Expect = 4.0
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 37030 tggtggccagccacgacc 37047
||||||||||||||||||
Sbjct: 1197 tggtggccagccacgacc 1214
>ISSav7
Length = 2992
Score = 36.2 bits (18), Expect = 4.0
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 19830 gccgtcgccgagcacggc 19847
||||||||||||||||||
Sbjct: 739 gccgtcgccgagcacggc 722
>ISKrh1
Length = 2854
Score = 36.2 bits (18), Expect = 4.0
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 16601 tcgtcgtcgacgacggct 16618
||||||||||||||||||
Sbjct: 1181 tcgtcgtcgacgacggct 1198
>ISAnsp1
Length = 1520
Score = 36.2 bits (18), Expect = 4.0
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 38297 ccgacccggcggtgctgc 38314
||||||||||||||||||
Sbjct: 259 ccgacccggcggtgctgc 276
>ISFpe1
Length = 2489
Score = 36.2 bits (18), Expect = 4.0
Identities = 27/30 (90%)
Strand = Plus / Minus
Query: 42192 tcgcgcaggatgtcttcgagcgcgtcgagg 42221
|||||||||| | |||| ||||||||||||
Sbjct: 2106 tcgcgcaggaaggcttccagcgcgtcgagg 2077
>ISMno2
Length = 1419
Score = 36.2 bits (18), Expect = 4.0
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 17611 caccttccgctgcaccac 17628
||||||||||||||||||
Sbjct: 1268 caccttccgctgcaccac 1251
>ISDge12
Length = 1145
Score = 36.2 bits (18), Expect = 4.0
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 21202 tcccgggcgacgaggtcg 21219
||||||||||||||||||
Sbjct: 840 tcccgggcgacgaggtcg 823
>ISMsm6
Length = 1765
Score = 36.2 bits (18), Expect = 4.0
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 40656 aatcgcccggatcgtgga 40673
||||||||||||||||||
Sbjct: 506 aatcgcccggatcgtgga 523
>ISHar2
Length = 1249
Score = 36.2 bits (18), Expect = 4.0
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 14468 gccgccgcctacttcgcc 14485
||||||||||||||||||
Sbjct: 324 gccgccgcctacttcgcc 341
>ISRhosp5
Length = 1335
Score = 36.2 bits (18), Expect = 4.0
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 6958 acgcggccgcggtgccgg 6975
||||||||||||||||||
Sbjct: 744 acgcggccgcggtgccgg 761
>ISAzo8
Length = 1261
Score = 36.2 bits (18), Expect = 4.0
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 11124 cgaggttgttggccgcga 11141
||||||||||||||||||
Sbjct: 1114 cgaggttgttggccgcga 1097
>ISTth3
Length = 1682
Score = 36.2 bits (18), Expect = 4.0
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 16670 gggtccgactggtggagc 16687
||||||||||||||||||
Sbjct: 1558 gggtccgactggtggagc 1575
>ISNmo2
Length = 1529
Score = 36.2 bits (18), Expect = 4.0
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 7629 gtgctcggccagggcgcg 7646
||||||||||||||||||
Sbjct: 1086 gtgctcggccagggcgcg 1069
>ISMva1
Length = 1093
Score = 36.2 bits (18), Expect = 4.0
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 4858 tcggcggcgttgtcgttgagcg 4879
|||||||| |||||||||||||
Sbjct: 1029 tcggcggcattgtcgttgagcg 1008
>ISLxx5
Length = 1495
Score = 36.2 bits (18), Expect = 4.0
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 1682 cctcgccgcgatcgtcgt 1699
||||||||||||||||||
Sbjct: 159 cctcgccgcgatcgtcgt 142
>ISLxx2
Length = 1427
Score = 36.2 bits (18), Expect = 4.0
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 44823 gagatccacgtcggcgcggtcg 44844
||||||||||||| ||||||||
Sbjct: 370 gagatccacgtcgccgcggtcg 391
>ISMlo3
Length = 1405
Score = 36.2 bits (18), Expect = 4.0
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 13474 ggagagccgacccgccag 13491
||||||||||||||||||
Sbjct: 589 ggagagccgacccgccag 572
>ISMav1
Length = 2536
Score = 36.2 bits (18), Expect = 4.0
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 32064 gcggtgccgccgaggacg 32081
||||||||||||||||||
Sbjct: 1719 gcggtgccgccgaggacg 1702
>IS4811
Length = 5396
Score = 36.2 bits (18), Expect = 4.0
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 6475 cgacgagtccggcaccgc 6492
||||||||||||||||||
Sbjct: 3158 cgacgagtccggcaccgc 3175
>ISSme3
Length = 3149
Score = 36.2 bits (18), Expect = 4.0
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 41207 cgacgaggagaaggcgcg 41224
||||||||||||||||||
Sbjct: 207 cgacgaggagaaggcgcg 224
>IS1612
Length = 2532
Score = 36.2 bits (18), Expect = 4.0
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 32064 gcggtgccgccgaggacg 32081
||||||||||||||||||
Sbjct: 1715 gcggtgccgccgaggacg 1698
>IS1137
Length = 1361
Score = 36.2 bits (18), Expect = 4.0
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 40870 tcgccgccgagctcgagcggcc 40891
|||||||||||||||| |||||
Sbjct: 346 tcgccgccgagctcgaccggcc 367
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_22_length_46409_cov_67.9372_ID_5212
(46,409 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| IS1629 | ISAs1 | - | Streptomyces sp. | 40 | 0.25 |
| ISSna1 | ISNCY | ISDol1 | Streptomyces natalensis | 38 | 1.0 |
| ISMyma10 | IS3 | IS51 | Mycobacterium marinum | 38 | 1.0 |
| ISBsa1 | IS256 | Blastococcus saxobsidens | 38 | 1.0 | |
| ISPa43 | Tn3 | Pseudomonas aeruginosa | 38 | 1.0 | |
| ISAzs18 | IS66 | Azospirillum sp. | 38 | 1.0 | |
| ISGeob7 | IS5 | IS427 | Geodermatophilus obscurus | 38 | 1.0 |
| ISPst12 | IS5 | Pseudomonas stutzeri | 38 | 1.0 | |
| ISButh4 | IS5 | IS5 | Burkholderia thailandensis | 38 | 1.0 |
| ISMex23 | IS200/IS605 | IS1341 | Methylobacterium extorquens | 38 | 1.0 |
| ISMsi5 | IS3 | IS3 | Methylocella silvestris | 38 | 1.0 |
| ISMex29 | IS110 | IS1111 | Methylobacterium extorquens | 38 | 1.0 |
| ISAnsp7 | IS4 | IS10 | Anaeromyxobacter sp. | 38 | 1.0 |
| ISAzo14 | IS1634 | Azoarcus sp. | 38 | 1.0 | |
| ISAau4 | Tn3 | Arthrobacter aurescens | 38 | 1.0 | |
| ISDge5 | IS701 | Deinococcus geothermalis | 38 | 1.0 | |
| ISRm14 | IS66 | - | Sinorhizobium meliloti | 38 | 1.0 |
| IS1537 | IS607 | Mycobacterium tuberculosis | 38 | 1.0 | |
| TnAs3 | Tn3 | Aeromonas salmonicida | 36 | 4.0 | |
| ISHth3 | IS4 | IS4Sa | Halococcus thailandensis | 36 | 4.0 |
| TnAs2 | Tn3 | Aeromonas salmonicida | 36 | 4.0 | |
| ISBj11 | IS21 | Bradyrhizobium japonicum | 36 | 4.0 | |
| ISBj12 | ISNCY | ISLbi1 | Bradyrhizobium japonicum | 36 | 4.0 |
| ISMtu1 | IS256 | Mycobacterium tusciae | 36 | 4.0 | |
| ISGsi1 | IS256 | IS1249 | Gordonia sihwensis | 36 | 4.0 |
| ISNamo14 | IS630 | Natronomonas moolapensis | 36 | 4.0 | |
| ISPa39 | IS3 | IS407 | Pseudomonas aeruginosa | 36 | 4.0 |
| ISPa36 | IS21 | Pseudomonas aeruginosa | 36 | 4.0 | |
| ISAzs36 | IS481 | Azospirillum sp. | 36 | 4.0 | |
| ISAzs33 | IS3 | IS150 | Azospirillum sp. | 36 | 4.0 |
| ISAzs10 | IS5 | Azospirillum sp. | 36 | 4.0 | |
| ISCaac1 | IS5 | IS427 | Catenulispora acidiphila | 36 | 4.0 |
| ISGau4 | IS3 | IS407 | Gemmatimonas aurantiaca | 36 | 4.0 |
| ISSdi1 | IS1182 | Streptomyces diastaticus | 36 | 4.0 | |
| ISFsp7 | IS5 | ISL2 | Frankia sp. | 36 | 4.0 |
| ISAmi2 | IS5 | ISL2 | Actinosynnema mirum | 36 | 4.0 |
| ISRce2 | IS1182 | Rhodospirillum centenum | 36 | 4.0 | |
| ISBdo1 | IS1182 | Burkholderia dolosa | 36 | 4.0 | |
| ISPmar3 | IS5 | IS5 | Paracoccus marcusii | 36 | 4.0 |
| ISShes11 | Tn3 | Shewanella sp. | 36 | 4.0 | |
| ISHwa9 | IS4 | IS4Sa | Haloquadratum walsbyi | 36 | 4.0 |
| ISHwa8 | IS4 | IS4Sa | Haloquadratum walsbyi | 36 | 4.0 |
| ISPhae1 | IS5 | IS5 | Paracoccus haeundaensis | 36 | 4.0 |
| ISMra2 | IS5 | IS427 | Methylobacterium radiotolerans | 36 | 4.0 |
| ISMch6 | IS110 | Methylobacterium chloromethanicum | 36 | 4.0 | |
| ISPfr11 | IS3 | IS3 | Propionibacterium freudenreichii | 36 | 4.0 |
| ISAar42 | ISL3 | Arthrobacter arilaitensis | 36 | 4.0 | |
| ISAar34 | ISL3 | Arthrobacter arilaitensis | 36 | 4.0 | |
| ISRop1 | IS1380 | Rhodococcus opacus | 36 | 4.0 | |
| ISMsm12 | IS1380 | Mycobacterium smegmatis | 36 | 4.0 | |
| ISGosp1 | IS1380 | Gordonia sp. | 36 | 4.0 | |
| ISStr1 | IS1380 | Salinispora tropica | 36 | 4.0 | |
| ISCef7 | IS1380 | Corynebacterium efficiens | 36 | 4.0 | |
| ISMdi13 | IS256 | Methylobacterium dichloromethanicum | 36 | 4.0 | |
| ISMex21 | IS630 | Methylobacterium extorquens | 36 | 4.0 | |
| ISStma7 | IS110 | Stenotrophomonas maltophilia | 36 | 4.0 | |
| ISCARN22 | IS66 | Metagenomic data from CARNOULES | 36 | 4.0 | |
| ISMlu1 | IS256 | Micrococcus luteus | 36 | 4.0 | |
| ISAli5 | IS3 | IS150 | Azospirillum lipoferum | 36 | 4.0 |
| ISGob2 | IS66 | ISBst12 | Gemmata obscuriglobus | 36 | 4.0 |
| ISCausp2 | IS1595 | ISNha5 | Caulobacter sp. | 36 | 4.0 |
| ISRme9 | IS21 | Ralstonia metallidurans | 36 | 4.0 | |
| ISSav2 | IS701 | Streptomyces avermitilis | 36 | 4.0 | |
| ISXo16 | IS1595 | IS1595 | Xanthomonas oryzae | 36 | 4.0 |
| ISAzo6 | IS1634 | Azoarcus sp. | 36 | 4.0 | |
| ISFlsp1 | IS21 | Flavobacterium sp | 36 | 4.0 | |
| IS4811 | IS5 | IS1031 | Streptomyces lividans | 36 | 4.0 |
| IS220 | IS1380 | - | Mycobacterium fortuitum | 36 | 4.0 |
| IS1354 | IS256 | - | Methylobacterium dichloromethanicum | 36 | 4.0 |
| IS1313 | IS66 | - | Agrobacterium tumefaciens | 36 | 4.0 |
>IS1629
Length = 1462
Score = 40.1 bits (20), Expect = 0.25
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 24224 cggcgacggcatcaccctcg 24243
||||||||||||||||||||
Sbjct: 730 cggcgacggcatcaccctcg 749
>ISSna1
Length = 1560
Score = 38.2 bits (19), Expect = 1.0
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 23565 gtcgcccgggccacggcgg 23583
|||||||||||||||||||
Sbjct: 794 gtcgcccgggccacggcgg 776
>ISMyma10
Length = 1352
Score = 38.2 bits (19), Expect = 1.0
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 29460 ggccgaggtcgatgccggt 29478
|||||||||||||||||||
Sbjct: 1149 ggccgaggtcgatgccggt 1131
Score = 36.2 bits (18), Expect = 4.0
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 30213 cgcgctcgccgcccgccg 30230
||||||||||||||||||
Sbjct: 669 cgcgctcgccgcccgccg 652
>ISBsa1
Length = 1464
Score = 38.2 bits (19), Expect = 1.0
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 13591 ccggcgatctcggcgtcgagggcggcg 13617
|||| ||||||||||||||| ||||||
Sbjct: 1371 ccggtgatctcggcgtcgagcgcggcg 1345
>ISPa43
Length = 19903
Score = 38.2 bits (19), Expect = 1.0
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 36510 acgcgctgctgcatcccgcccga 36532
|||||||||||||| ||||||||
Sbjct: 11024 acgcgctgctgcatgccgcccga 11002
>ISAzs18
Length = 2633
Score = 38.2 bits (19), Expect = 1.0
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 29529 tgccggctccggcgccgagggcg 29551
|||||||||||||||||| ||||
Sbjct: 410 tgccggctccggcgccgacggcg 388
>ISGeob7
Length = 883
Score = 38.2 bits (19), Expect = 1.0
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 37109 cgaccgcggacgccccggc 37127
|||||||||||||||||||
Sbjct: 439 cgaccgcggacgccccggc 457
>ISPst12
Length = 1331
Score = 38.2 bits (19), Expect = 1.0
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 21497 cgggatgcgctgctccagc 21515
|||||||||||||||||||
Sbjct: 147 cgggatgcgctgctccagc 129
>ISButh4
Length = 1483
Score = 38.2 bits (19), Expect = 1.0
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 16037 cgcggcgacgttgccgggc 16055
|||||||||||||||||||
Sbjct: 298 cgcggcgacgttgccgggc 280
>ISMex23
Length = 1390
Score = 38.2 bits (19), Expect = 1.0
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 41367 cggcaccgtcatcgagcccggcc 41389
|||||||||||| ||||||||||
Sbjct: 949 cggcaccgtcatggagcccggcc 971
Score = 36.2 bits (18), Expect = 4.0
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 26338 cgacgacgctcgcccgctcgac 26359
||||||||||||||| ||||||
Sbjct: 672 cgacgacgctcgccctctcgac 693
>ISMsi5
Length = 1228
Score = 38.2 bits (19), Expect = 1.0
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 3126 ggaggcggtcgctcgtcgc 3144
|||||||||||||||||||
Sbjct: 841 ggaggcggtcgctcgtcgc 823
>ISMex29
Length = 1339
Score = 38.2 bits (19), Expect = 1.0
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 27653 atcgcggcgacgacgccgg 27671
|||||||||||||||||||
Sbjct: 751 atcgcggcgacgacgccgg 769
>ISAnsp7
Length = 1579
Score = 38.2 bits (19), Expect = 1.0
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 26441 gccgaagccgagctggtcc 26459
|||||||||||||||||||
Sbjct: 672 gccgaagccgagctggtcc 654
>ISAzo14
Length = 1925
Score = 38.2 bits (19), Expect = 1.0
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 6676 gccaccggcgccgacggtg 6694
|||||||||||||||||||
Sbjct: 352 gccaccggcgccgacggtg 370
>ISAau4
Length = 3898
Score = 38.2 bits (19), Expect = 1.0
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 5650 gccggggtggaccgggacg 5668
|||||||||||||||||||
Sbjct: 1482 gccggggtggaccgggacg 1500
>ISDge5
Length = 1150
Score = 38.2 bits (19), Expect = 1.0
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 35510 ggagggccagggtcaaggc 35528
|||||||||||||||||||
Sbjct: 1049 ggagggccagggtcaaggc 1031
>ISRm14
Length = 2695
Score = 38.2 bits (19), Expect = 1.0
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 41345 cgcccatcgtcgacgaggc 41363
|||||||||||||||||||
Sbjct: 2087 cgcccatcgtcgacgaggc 2105
Score = 36.2 bits (18), Expect = 4.0
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 30051 agttgaagctcgacccgc 30068
||||||||||||||||||
Sbjct: 627 agttgaagctcgacccgc 644
>IS1537
Length = 1921
Score = 38.2 bits (19), Expect = 1.0
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 29521 cgggctgttgccggctccggcgc 29543
|||||||||||||| ||||||||
Sbjct: 136 cgggctgttgccggttccggcgc 158
>TnAs3
Length = 18735
Score = 36.2 bits (18), Expect = 4.0
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 12733 cccagatgtcggccgagcgcag 12754
||||||||||| ||||||||||
Sbjct: 17161 cccagatgtcgcccgagcgcag 17140
>ISHth3
Length = 1472
Score = 36.2 bits (18), Expect = 4.0
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 862 cctgacgacgctggcgtc 879
||||||||||||||||||
Sbjct: 972 cctgacgacgctggcgtc 989
>TnAs2
Length = 8650
Score = 36.2 bits (18), Expect = 4.0
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 12733 cccagatgtcggccgagcgcag 12754
||||||||||| ||||||||||
Sbjct: 7073 cccagatgtcgcccgagcgcag 7052
>ISBj11
Length = 2649
Score = 36.2 bits (18), Expect = 4.0
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 20741 cggcctggtccttggtga 20758
||||||||||||||||||
Sbjct: 2260 cggcctggtccttggtga 2243
>ISBj12
Length = 1743
Score = 36.2 bits (18), Expect = 4.0
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 34601 gtgatgtcgacgaactcg 34618
||||||||||||||||||
Sbjct: 205 gtgatgtcgacgaactcg 188
>ISMtu1
Length = 1474
Score = 36.2 bits (18), Expect = 4.0
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 11661 cgacggccgcctcgccgagacg 11682
|||||||||||||||| |||||
Sbjct: 1161 cgacggccgcctcgccaagacg 1182
>ISGsi1
Length = 1310
Score = 36.2 bits (18), Expect = 4.0
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 1487 acgtgggtgccgtcgaag 1504
||||||||||||||||||
Sbjct: 449 acgtgggtgccgtcgaag 432
>ISNamo14
Length = 1067
Score = 36.2 bits (18), Expect = 4.0
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 157 aggacggtgtcgagcagc 174
||||||||||||||||||
Sbjct: 149 aggacggtgtcgagcagc 166
>ISPa39
Length = 1254
Score = 36.2 bits (18), Expect = 4.0
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 3910 cgttggccagggcgtcga 3927
||||||||||||||||||
Sbjct: 713 cgttggccagggcgtcga 696
>ISPa36
Length = 2468
Score = 36.2 bits (18), Expect = 4.0
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 2017 gatgccgatggcggaggccagg 2038
|||||||||||||| |||||||
Sbjct: 1962 gatgccgatggcggtggccagg 1941
>ISAzs36
Length = 2622
Score = 36.2 bits (18), Expect = 4.0
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 7434 gccgctcgaccttgccct 7451
||||||||||||||||||
Sbjct: 873 gccgctcgaccttgccct 856
>ISAzs33
Length = 1265
Score = 36.2 bits (18), Expect = 4.0
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 1954 ccagcgcccgaagacgac 1971
||||||||||||||||||
Sbjct: 632 ccagcgcccgaagacgac 649
>ISAzs10
Length = 1307
Score = 36.2 bits (18), Expect = 4.0
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 19960 agccgcgcctcggggtcg 19977
||||||||||||||||||
Sbjct: 677 agccgcgcctcggggtcg 660
>ISCaac1
Length = 996
Score = 36.2 bits (18), Expect = 4.0
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 28555 agtcgacgatctcgccgt 28572
||||||||||||||||||
Sbjct: 868 agtcgacgatctcgccgt 851
>ISGau4
Length = 1210
Score = 36.2 bits (18), Expect = 4.0
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 44793 cgtgccgggcagcgacgt 44810
||||||||||||||||||
Sbjct: 821 cgtgccgggcagcgacgt 804
>ISSdi1
Length = 1789
Score = 36.2 bits (18), Expect = 4.0
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 33812 gtgcgggcgcggatcgac 33829
||||||||||||||||||
Sbjct: 343 gtgcgggcgcggatcgac 360
>ISFsp7
Length = 1041
Score = 36.2 bits (18), Expect = 4.0
Identities = 24/26 (92%)
Strand = Plus / Minus
Query: 29436 cgtcctccgcggcggagagcacctgg 29461
|||| |||| ||||||||||||||||
Sbjct: 591 cgtcgtccggggcggagagcacctgg 566
>ISAmi2
Length = 942
Score = 36.2 bits (18), Expect = 4.0
Identities = 24/26 (92%)
Strand = Plus / Plus
Query: 14692 ccgcctgcgcggcctcgtcgaacgcg 14717
|||||||||||||| || ||||||||
Sbjct: 789 ccgcctgcgcggccccggcgaacgcg 814
>ISRce2
Length = 1528
Score = 36.2 bits (18), Expect = 4.0
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 42756 ggcagggcctgctcgccgccgc 42777
||||| ||||||||||||||||
Sbjct: 1339 ggcagtgcctgctcgccgccgc 1360
>ISBdo1
Length = 1572
Score = 36.2 bits (18), Expect = 4.0
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 43217 ttgcgcaacctgctcttcgtcg 43238
||||||||||||| ||||||||
Sbjct: 551 ttgcgcaacctgcacttcgtcg 530
>ISPmar3
Length = 1282
Score = 36.2 bits (18), Expect = 4.0
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 17593 gaactcctcccacggcac 17610
||||||||||||||||||
Sbjct: 179 gaactcctcccacggcac 162
>ISShes11
Length = 7669
Score = 36.2 bits (18), Expect = 4.0
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 12733 cccagatgtcggccgagcgcag 12754
||||||||||| ||||||||||
Sbjct: 6095 cccagatgtcgcccgagcgcag 6074
>ISHwa9
Length = 1511
Score = 36.2 bits (18), Expect = 4.0
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 862 cctgacgacgctggcgtc 879
||||||||||||||||||
Sbjct: 1010 cctgacgacgctggcgtc 1027
>ISHwa8
Length = 1509
Score = 36.2 bits (18), Expect = 4.0
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 862 cctgacgacgctggcgtc 879
||||||||||||||||||
Sbjct: 1009 cctgacgacgctggcgtc 1026
>ISPhae1
Length = 1485
Score = 36.2 bits (18), Expect = 4.0
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 31443 gcgcagatcgaccccggc 31460
||||||||||||||||||
Sbjct: 673 gcgcagatcgaccccggc 656
>ISMra2
Length = 905
Score = 36.2 bits (18), Expect = 4.0
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 39996 gcttgccgccgacctcggcgcg 40017
||||||||||| ||||||||||
Sbjct: 510 gcttgccgccgccctcggcgcg 489
>ISMch6
Length = 1379
Score = 36.2 bits (18), Expect = 4.0
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 19755 gggtgccggcgaaggcgg 19772
||||||||||||||||||
Sbjct: 638 gggtgccggcgaaggcgg 621
>ISPfr11
Length = 1315
Score = 36.2 bits (18), Expect = 4.0
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 16177 cgacgaccatgacgacgg 16194
||||||||||||||||||
Sbjct: 885 cgacgaccatgacgacgg 902
>ISAar42
Length = 1443
Score = 36.2 bits (18), Expect = 4.0
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 18485 aggaccccaccgggcaccgcgg 18506
||||| ||||||||||||||||
Sbjct: 941 aggacaccaccgggcaccgcgg 962
>ISAar34
Length = 1438
Score = 36.2 bits (18), Expect = 4.0
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 35379 cgccaggccgatgagggc 35396
||||||||||||||||||
Sbjct: 1367 cgccaggccgatgagggc 1350
>ISRop1
Length = 4160
Score = 36.2 bits (18), Expect = 4.0
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 43148 ggccaccgcctgcgccgcggcg 43169
||||| ||||||||||||||||
Sbjct: 3170 ggccaacgcctgcgccgcggcg 3191
>ISMsm12
Length = 3256
Score = 36.2 bits (18), Expect = 4.0
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 14803 cgatgtcgaggtcgtcga 14820
||||||||||||||||||
Sbjct: 1963 cgatgtcgaggtcgtcga 1946
>ISGosp1
Length = 1642
Score = 36.2 bits (18), Expect = 4.0
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 14803 cgatgtcgaggtcgtcga 14820
||||||||||||||||||
Sbjct: 356 cgatgtcgaggtcgtcga 339
>ISStr1
Length = 1664
Score = 36.2 bits (18), Expect = 4.0
Identities = 24/26 (92%)
Strand = Plus / Minus
Query: 36250 cggccacccgcggccgcggcaggtcg 36275
|||||||| ||||||||||||||||
Sbjct: 541 cggccaccgtcggccgcggcaggtcg 516
>ISCef7
Length = 1687
Score = 36.2 bits (18), Expect = 4.0
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 28344 cacggtcactcgccgccg 28361
||||||||||||||||||
Sbjct: 1498 cacggtcactcgccgccg 1515
>ISMdi13
Length = 1416
Score = 36.2 bits (18), Expect = 4.0
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 43456 cgatcgcgaggcgggcgccgcc 43477
|||||||||||||| |||||||
Sbjct: 350 cgatcgcgaggcggacgccgcc 371
>ISMex21
Length = 1040
Score = 36.2 bits (18), Expect = 4.0
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 37750 gcgggtgatgccgtggcg 37767
||||||||||||||||||
Sbjct: 404 gcgggtgatgccgtggcg 387
>ISStma7
Length = 1223
Score = 36.2 bits (18), Expect = 4.0
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 17736 ccgggtgcgcgacgctga 17753
||||||||||||||||||
Sbjct: 1083 ccgggtgcgcgacgctga 1100
>ISCARN22
Length = 2674
Score = 36.2 bits (18), Expect = 4.0
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 29977 cgcgatcttcgcctgcgt 29994
||||||||||||||||||
Sbjct: 360 cgcgatcttcgcctgcgt 377
>ISMlu1
Length = 1413
Score = 36.2 bits (18), Expect = 4.0
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 41426 cggccgccctcgcggacc 41443
||||||||||||||||||
Sbjct: 652 cggccgccctcgcggacc 635
>ISAli5
Length = 1266
Score = 36.2 bits (18), Expect = 4.0
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 1954 ccagcgcccgaagacgac 1971
||||||||||||||||||
Sbjct: 632 ccagcgcccgaagacgac 649
>ISGob2
Length = 1575
Score = 36.2 bits (18), Expect = 4.0
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 32718 cgttgagccgggcccggt 32735
||||||||||||||||||
Sbjct: 1071 cgttgagccgggcccggt 1088
>ISCausp2
Length = 7915
Score = 36.2 bits (18), Expect = 4.0
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 1456 ggtgtcgagggcctgggc 1473
||||||||||||||||||
Sbjct: 3911 ggtgtcgagggcctgggc 3894
>ISRme9
Length = 2688
Score = 36.2 bits (18), Expect = 4.0
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 3962 cacctcgaacggacgcccggcc 3983
||||||||| ||||||||||||
Sbjct: 1500 cacctcgaatggacgcccggcc 1521
>ISSav2
Length = 1938
Score = 36.2 bits (18), Expect = 4.0
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 24269 cggcccgatggccggcgt 24286
||||||||||||||||||
Sbjct: 1218 cggcccgatggccggcgt 1201
>ISXo16
Length = 1072
Score = 36.2 bits (18), Expect = 4.0
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 43878 ccacaaagctcggcgccg 43895
||||||||||||||||||
Sbjct: 644 ccacaaagctcggcgccg 627
>ISAzo6
Length = 1925
Score = 36.2 bits (18), Expect = 4.0
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 24493 tcgacgtcaaggcgatca 24510
||||||||||||||||||
Sbjct: 585 tcgacgtcaaggcgatca 602
>ISFlsp1
Length = 2669
Score = 36.2 bits (18), Expect = 4.0
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 44230 ggtccgagcgcgagcgcg 44247
||||||||||||||||||
Sbjct: 2076 ggtccgagcgcgagcgcg 2059
>IS4811
Length = 5396
Score = 36.2 bits (18), Expect = 4.0
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 25145 cggtgtcggccaggtcgg 25162
||||||||||||||||||
Sbjct: 5038 cggtgtcggccaggtcgg 5021
>IS220
Length = 3257
Score = 36.2 bits (18), Expect = 4.0
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 14803 cgatgtcgaggtcgtcga 14820
||||||||||||||||||
Sbjct: 1963 cgatgtcgaggtcgtcga 1946
>IS1354
Length = 1431
Score = 36.2 bits (18), Expect = 4.0
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 35819 cgaacgtgccggtcagcg 35836
||||||||||||||||||
Sbjct: 365 cgaacgtgccggtcagcg 348
>IS1313
Length = 2547
Score = 36.2 bits (18), Expect = 4.0
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 930 ggcggggccaccagaaccggtc 951
|||||||||||| |||||||||
Sbjct: 723 ggcggggccacctgaaccggtc 702
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_23_length_39760_cov_62.0386_ID_5214
(39,760 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| IS1162 | IS21 | - | Pseudomonas fluorescens | 44 | 0.014 |
| ISMex8 | IS21 | Methylobacterium extorquens | 42 | 0.055 | |
| ISRxy1 | IS1182 | Rubrobacter xylanophilus | 40 | 0.22 | |
| ISAnsp4 | IS21 | Anaeromyxobacter sp. | 40 | 0.22 | |
| ISRso19 | IS21 | - | Ralstonia solanacearum | 40 | 0.22 |
| ISNamo22 | IS200/IS605 | IS1341 | Natronomonas moolapensis | 38 | 0.86 |
| ISMtu1 | IS256 | Mycobacterium tusciae | 38 | 0.86 | |
| ISNamo2 | IS5 | ISH1 | Natronomonas moolapensis | 38 | 0.86 |
| ISCte5 | IS5 | Comamonas testosteroni | 38 | 0.86 | |
| ISMno37 | IS6 | Methylobacterium nodulans | 38 | 0.86 | |
| ISMno36 | IS6 | Methylobacterium nodulans | 38 | 0.86 | |
| ISAar43 | IS3 | IS407 | Arthrobacter arilaitensis | 38 | 0.86 |
| ISTha2 | ISAs1 | Thauera sp. | 38 | 0.86 | |
| ISCARN39 | IS630 | Metagenomic data from CARNOULES | 38 | 0.86 | |
| ISAzvi12 | IS110 | IS1111 | Azotobacter vinelandii | 38 | 0.86 |
| ISRhsp3 | IS481 | Rhodobacter sphaeroides | 38 | 0.86 | |
| ISSme3 | IS66 | Sinorhizobium medicae | 38 | 0.86 | |
| ISMex45 | IS200/IS605 | IS1341 | Methylobacterium extorquens | 36 | 3.4 |
| ISNph23 | IS200/IS605 | IS1341 | Natronomonas pharaonis | 36 | 3.4 |
| ISNpe13 | IS630 | Natrinema pellirubrum | 36 | 3.4 | |
| ISStu2 | ISAzo13 | Streptomyces turgidiscabies | 36 | 3.4 | |
| ISMfu2 | ISKra4 | ISKra4 | Myxococcus fulvus | 36 | 3.4 |
| ISAzs24 | IS3 | IS51 | Azospirillum sp. | 36 | 3.4 |
| ISNph10 | IS200/IS605 | IS1341 | Natronomonas pharaonis | 36 | 3.4 |
| ISAmde1 | IS1182 | Ammonifex degensii | 36 | 3.4 | |
| ISVsp3 | IS66 | Verrucomicrobium spinosum | 36 | 3.4 | |
| ISRhsp7 | IS5 | Rhodobacter sphaeroides | 36 | 3.4 | |
| ISNha6 | IS5 | IS5 | Nitrobacter hamburgensis | 36 | 3.4 |
| ISMno5 | ISL3 | Methylobacterium nodulans | 36 | 3.4 | |
| ISMpo3 | IS1380 | Methylobacterium populi | 36 | 3.4 | |
| ISAnsp13 | ISAs1 | Anaeromyxobacter sp. | 36 | 3.4 | |
| ISAde1 | IS66 | Anaeromyxobacter dehalogenans | 36 | 3.4 | |
| ISMdi11 | IS481 | Methylobacterium dichloromethanicum | 36 | 3.4 | |
| ISMex10 | ISL3 | Methylobacterium extorquens | 36 | 3.4 | |
| ISSav5 | IS481 | Streptomyces avermitilis | 36 | 3.4 | |
| ISMex5 | IS3 | IS407 | Methylobacterium extorquens | 36 | 3.4 |
| ISAzo28 | IS110 | Azoarcus sp. | 36 | 3.4 | |
| ISCARN58 | IS21 | Metagenomic data from CARNOULES | 36 | 3.4 | |
| ISApr6 | IS66 | Alpha proteobacterium | 36 | 3.4 | |
| ISDpr4 | IS66 | Delta proteobacterium | 36 | 3.4 | |
| ISCausp2 | IS1595 | ISNha5 | Caulobacter sp. | 36 | 3.4 |
| IS1557 | ISL3 | Mycobacterium tuberculosis | 36 | 3.4 | |
| ISMsm6 | IS1634 | Mycobacterium smegmatis | 36 | 3.4 | |
| ISHne3 | IS110 | Hyphomonas neptunium | 36 | 3.4 | |
| ISAzo9 | IS630 | Azoarcus sp. | 36 | 3.4 | |
| ISCro6 | IS4 | IS4 | Citrobacter rodentium | 36 | 3.4 |
| ISXca4 | IS1595 | IS1595 | Xanthomonas campestris | 36 | 3.4 |
| ISRle5 | IS3 | IS407 | Rhizobium leguminosarum | 36 | 3.4 |
| ISXca1 | IS3 | IS407 | Xanthomonas campestris | 36 | 3.4 |
| ISCsp1 | IS256 | Comamonas sp | 36 | 3.4 | |
| ISFal1 | ISL3 | Frankia alni | 36 | 3.4 | |
| ISEc8 | IS66 | Escherichia coli | 36 | 3.4 | |
| ISRle1 | IS110 | IS1111 | Rhizobium leguminosarum | 36 | 3.4 |
| ISBlo5 | IS256 | Bifidobacterium longum | 36 | 3.4 | |
| ISRso13 | IS4 | IS4 | Ralstonia solanacearum | 36 | 3.4 |
| ISRm12 | IS5 | IS5 | Sinorhizobium meliloti | 36 | 3.4 |
| ISPpu1 | IS630 | - | Pseudomonas putida | 36 | 3.4 |
| ISPa42 | Tn3 | Pseudomonas aeruginosa | 36 | 3.4 | |
| IS616 | IS1380 | - | Bacteroides fragilis | 36 | 3.4 |
| IS1655 | IS30 | - | Neisseria meningitidis | 36 | 3.4 |
| IS1474 | IS21 | - | Pseudomonas alcaligenes | 36 | 3.4 |
| IS1248B | IS5 | IS427 | Paracoccus denitrificans | 36 | 3.4 |
| IS1248A | IS5 | IS427 | Paracoccus denitrificans | 36 | 3.4 |
| IS1188 | IS1380 | - | Bacteroides fragilis | 36 | 3.4 |
>IS1162
Length = 2634
Score = 44.1 bits (22), Expect = 0.014
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 5740 cgacccggccaccggcgagatc 5761
||||||||||||||||||||||
Sbjct: 705 cgacccggccaccggcgagatc 726
>ISMex8
Length = 2597
Score = 42.1 bits (21), Expect = 0.055
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 23595 cggcagggcacgcaggacggc 23615
|||||||||||||||||||||
Sbjct: 1011 cggcagggcacgcaggacggc 991
>ISRxy1
Length = 1790
Score = 40.1 bits (20), Expect = 0.22
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 19402 gcgccgcatcacgcagccgc 19421
||||||||||||||||||||
Sbjct: 833 gcgccgcatcacgcagccgc 814
>ISAnsp4
Length = 2195
Score = 40.1 bits (20), Expect = 0.22
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1938 gccggcagatgcagatcgag 1957
||||||||||||||||||||
Sbjct: 484 gccggcagatgcagatcgag 503
>ISRso19
Length = 1956
Score = 40.1 bits (20), Expect = 0.22
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 23256 ccggtcgagcatggctgccg 23275
||||||||||||||||||||
Sbjct: 1771 ccggtcgagcatggctgccg 1752
>ISNamo22
Length = 1706
Score = 38.2 bits (19), Expect = 0.86
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 7042 cgagggcggcttcgagggc 7060
|||||||||||||||||||
Sbjct: 444 cgagggcggcttcgagggc 462
>ISMtu1
Length = 1474
Score = 38.2 bits (19), Expect = 0.86
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 10892 gcgcagggcgtcgacgagc 10910
|||||||||||||||||||
Sbjct: 1368 gcgcagggcgtcgacgagc 1350
>ISNamo2
Length = 937
Score = 38.2 bits (19), Expect = 0.86
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 22269 cggcggcgacgctccgcaggtcg 22291
||||||||| |||||||||||||
Sbjct: 630 cggcggcgaggctccgcaggtcg 608
>ISCte5
Length = 1321
Score = 38.2 bits (19), Expect = 0.86
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 11425 gtcggcgccgaccgtggcc 11443
|||||||||||||||||||
Sbjct: 862 gtcggcgccgaccgtggcc 844
>ISMno37
Length = 889
Score = 38.2 bits (19), Expect = 0.86
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 38043 cggcgacttcaagggccgg 38061
|||||||||||||||||||
Sbjct: 126 cggcgacttcaagggccgg 144
>ISMno36
Length = 888
Score = 38.2 bits (19), Expect = 0.86
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 38043 cggcgacttcaagggccgg 38061
|||||||||||||||||||
Sbjct: 126 cggcgacttcaagggccgg 144
>ISAar43
Length = 1247
Score = 38.2 bits (19), Expect = 0.86
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 5476 gacgcgcagcccttcctcg 5494
|||||||||||||||||||
Sbjct: 655 gacgcgcagcccttcctcg 637
>ISTha2
Length = 1268
Score = 38.2 bits (19), Expect = 0.86
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 32589 cgtcgatcgccacgaccgt 32607
|||||||||||||||||||
Sbjct: 461 cgtcgatcgccacgaccgt 443
>ISCARN39
Length = 1106
Score = 38.2 bits (19), Expect = 0.86
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 24360 ctggacggcctcgcgtggg 24378
|||||||||||||||||||
Sbjct: 275 ctggacggcctcgcgtggg 257
>ISAzvi12
Length = 1248
Score = 38.2 bits (19), Expect = 0.86
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 8370 gcttcgcgcaggtcgtgcagctg 8392
|||||||||||| ||||||||||
Sbjct: 456 gcttcgcgcaggccgtgcagctg 434
>ISRhsp3
Length = 1104
Score = 38.2 bits (19), Expect = 0.86
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 9309 tcgaggggctcaaggacct 9327
|||||||||||||||||||
Sbjct: 235 tcgaggggctcaaggacct 253
>ISSme3
Length = 3149
Score = 38.2 bits (19), Expect = 0.86
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 13178 gctcgatgacgaggcgttc 13196
|||||||||||||||||||
Sbjct: 2563 gctcgatgacgaggcgttc 2581
>ISMex45
Length = 1270
Score = 36.2 bits (18), Expect = 3.4
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 18442 tcgacctcggcctgacct 18459
||||||||||||||||||
Sbjct: 653 tcgacctcggcctgacct 670
>ISNph23
Length = 1615
Score = 36.2 bits (18), Expect = 3.4
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 18435 ctcgggatcgacctcggc 18452
||||||||||||||||||
Sbjct: 776 ctcgggatcgacctcggc 793
>ISNpe13
Length = 1160
Score = 36.2 bits (18), Expect = 3.4
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 29960 tcttcgtcgtcatcgtcg 29977
||||||||||||||||||
Sbjct: 594 tcttcgtcgtcatcgtcg 577
>ISStu2
Length = 1760
Score = 36.2 bits (18), Expect = 3.4
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 28810 cgcacccggccatcgggc 28827
||||||||||||||||||
Sbjct: 284 cgcacccggccatcgggc 267
>ISMfu2
Length = 1554
Score = 36.2 bits (18), Expect = 3.4
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 4873 gccccgagcttctccatc 4890
||||||||||||||||||
Sbjct: 1107 gccccgagcttctccatc 1090
>ISAzs24
Length = 1325
Score = 36.2 bits (18), Expect = 3.4
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 12555 gccgcccggcgggccgat 12572
||||||||||||||||||
Sbjct: 474 gccgcccggcgggccgat 491
>ISNph10
Length = 1359
Score = 36.2 bits (18), Expect = 3.4
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 15840 ctcctgcccgtcgtgtgg 15857
||||||||||||||||||
Sbjct: 1148 ctcctgcccgtcgtgtgg 1165
>ISAmde1
Length = 1827
Score = 36.2 bits (18), Expect = 3.4
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 9559 gaagaaccgccacggccg 9576
||||||||||||||||||
Sbjct: 436 gaagaaccgccacggccg 453
>ISVsp3
Length = 2446
Score = 36.2 bits (18), Expect = 3.4
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 29664 ggccctggccatgctcac 29681
||||||||||||||||||
Sbjct: 753 ggccctggccatgctcac 770
>ISRhsp7
Length = 1397
Score = 36.2 bits (18), Expect = 3.4
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 22958 cccgcgtcgaggccgggt 22975
||||||||||||||||||
Sbjct: 32 cccgcgtcgaggccgggt 15
>ISNha6
Length = 1547
Score = 36.2 bits (18), Expect = 3.4
Identities = 24/26 (92%)
Strand = Plus / Plus
Query: 19220 cgcaagatcgccggcaatccgtacag 19245
||||||||||||||| ||||| ||||
Sbjct: 863 cgcaagatcgccggcgatccggacag 888
>ISMno5
Length = 1728
Score = 36.2 bits (18), Expect = 3.4
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 27687 cgaggtcgacgagaagcg 27704
||||||||||||||||||
Sbjct: 584 cgaggtcgacgagaagcg 567
>ISMpo3
Length = 1617
Score = 36.2 bits (18), Expect = 3.4
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 31697 cctcatccggctcgggcg 31714
||||||||||||||||||
Sbjct: 506 cctcatccggctcgggcg 523
>ISAnsp13
Length = 1367
Score = 36.2 bits (18), Expect = 3.4
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 29379 gcccgcccagctgctcgc 29396
||||||||||||||||||
Sbjct: 679 gcccgcccagctgctcgc 662
>ISAde1
Length = 2957
Score = 36.2 bits (18), Expect = 3.4
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 26946 cgcccaggagctgctcttcccg 26967
||||| ||||||||||||||||
Sbjct: 371 cgccctggagctgctcttcccg 392
>ISMdi11
Length = 1053
Score = 36.2 bits (18), Expect = 3.4
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 37109 agcacggtcgagcggatc 37126
||||||||||||||||||
Sbjct: 244 agcacggtcgagcggatc 227
>ISMex10
Length = 1754
Score = 36.2 bits (18), Expect = 3.4
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 23748 gatgacctcgacgtcgacgccg 23769
||||||||||||| ||||||||
Sbjct: 1357 gatgacctcgacgccgacgccg 1378
>ISSav5
Length = 1953
Score = 36.2 bits (18), Expect = 3.4
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 22218 ggagtgcaccgcctgcctcgac 22239
||||||||||| ||||||||||
Sbjct: 228 ggagtgcaccgactgcctcgac 207
>ISMex5
Length = 1283
Score = 36.2 bits (18), Expect = 3.4
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 33697 tggcgagcccgttccacgaggt 33718
||||||||| ||||||||||||
Sbjct: 513 tggcgagccagttccacgaggt 492
>ISAzo28
Length = 1486
Score = 36.2 bits (18), Expect = 3.4
Identities = 24/26 (92%)
Strand = Plus / Plus
Query: 30555 gctgctggccctggccggctcgctcg 30580
||||||||||||||||| || |||||
Sbjct: 371 gctgctggccctggccgactggctcg 396
>ISCARN58
Length = 2436
Score = 36.2 bits (18), Expect = 3.4
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 39447 ttgctcacctcaagagcc 39464
||||||||||||||||||
Sbjct: 1761 ttgctcacctcaagagcc 1744
>ISApr6
Length = 2479
Score = 36.2 bits (18), Expect = 3.4
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 10876 cctcggtcggcagcccgc 10893
||||||||||||||||||
Sbjct: 1468 cctcggtcggcagcccgc 1451
>ISDpr4
Length = 2431
Score = 36.2 bits (18), Expect = 3.4
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 31492 ccggaggcgatccaccag 31509
||||||||||||||||||
Sbjct: 1972 ccggaggcgatccaccag 1989
>ISCausp2
Length = 7915
Score = 36.2 bits (18), Expect = 3.4
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 19783 cgtgaccggcgccgtcgc 19800
||||||||||||||||||
Sbjct: 352 cgtgaccggcgccgtcgc 335
>IS1557
Length = 1509
Score = 36.2 bits (18), Expect = 3.4
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 1771 ggccaccgaggcgctcga 1788
||||||||||||||||||
Sbjct: 893 ggccaccgaggcgctcga 910
>ISMsm6
Length = 1765
Score = 36.2 bits (18), Expect = 3.4
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 19006 cgccgcagtcggtggcgt 19023
||||||||||||||||||
Sbjct: 681 cgccgcagtcggtggcgt 664
>ISHne3
Length = 1172
Score = 36.2 bits (18), Expect = 3.4
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 7761 cggttgaagggggcaagc 7778
||||||||||||||||||
Sbjct: 892 cggttgaagggggcaagc 875
>ISAzo9
Length = 1483
Score = 36.2 bits (18), Expect = 3.4
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 6774 tcgccgatgtgccggtcgaggc 6795
||||||||| ||||||||||||
Sbjct: 1324 tcgccgatgcgccggtcgaggc 1303
>ISCro6
Length = 1415
Score = 36.2 bits (18), Expect = 3.4
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 17481 ggcctgcgtcgagacctgcatc 17502
|||||||| |||||||||||||
Sbjct: 869 ggcctgcggcgagacctgcatc 848
>ISXca4
Length = 1072
Score = 36.2 bits (18), Expect = 3.4
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 24252 tggtgtgcgcgtgaccgg 24269
||||||||||||||||||
Sbjct: 782 tggtgtgcgcgtgaccgg 765
>ISRle5
Length = 1196
Score = 36.2 bits (18), Expect = 3.4
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 18776 cttcttcatctccggcgg 18793
||||||||||||||||||
Sbjct: 224 cttcttcatctccggcgg 207
>ISXca1
Length = 1225
Score = 36.2 bits (18), Expect = 3.4
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 28630 gcgatgacctcgcgagcc 28647
||||||||||||||||||
Sbjct: 1060 gcgatgacctcgcgagcc 1043
>ISCsp1
Length = 1393
Score = 36.2 bits (18), Expect = 3.4
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 1213 aggtcatggccgaggtcgcggc 1234
||||||||||||||||| ||||
Sbjct: 514 aggtcatggccgaggtcacggc 535
>ISFal1
Length = 1736
Score = 36.2 bits (18), Expect = 3.4
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 12811 gcggaccgttccgcgggc 12828
||||||||||||||||||
Sbjct: 1057 gcggaccgttccgcgggc 1040
>ISEc8
Length = 2442
Score = 36.2 bits (18), Expect = 3.4
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 10715 agattctgaccagacgattcag 10736
|||||||||||||||| |||||
Sbjct: 35 agattctgaccagacggttcag 14
>ISRle1
Length = 1409
Score = 36.2 bits (18), Expect = 3.4
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 36334 tcagcagctcgcgtgcgc 36351
||||||||||||||||||
Sbjct: 466 tcagcagctcgcgtgcgc 449
>ISBlo5
Length = 1366
Score = 36.2 bits (18), Expect = 3.4
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 4729 ctcgtcggcatcggcgtcgagc 4750
||||||||| ||||||||||||
Sbjct: 244 ctcgtcggcctcggcgtcgagc 223
>ISRso13
Length = 1467
Score = 36.2 bits (18), Expect = 3.4
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 22636 gccgccaagttggcgccg 22653
||||||||||||||||||
Sbjct: 600 gccgccaagttggcgccg 583
>ISRm12
Length = 1481
Score = 36.2 bits (18), Expect = 3.4
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 19219 ccgcaagatcgccggcaa 19236
||||||||||||||||||
Sbjct: 800 ccgcaagatcgccggcaa 817
>ISPpu1
Length = 1164
Score = 36.2 bits (18), Expect = 3.4
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 33187 cgccggccagcgtccagc 33204
||||||||||||||||||
Sbjct: 430 cgccggccagcgtccagc 447
>ISPa42
Length = 16941
Score = 36.2 bits (18), Expect = 3.4
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 33608 caggtcgaggacgagatccgcg 33629
||||||| ||||||||||||||
Sbjct: 7969 caggtcggggacgagatccgcg 7990
>IS616
Length = 1691
Score = 36.2 bits (18), Expect = 3.4
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 25001 agaggtcggcgccttcac 25018
||||||||||||||||||
Sbjct: 1298 agaggtcggcgccttcac 1315
>IS1655
Length = 1080
Score = 36.2 bits (18), Expect = 3.4
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 23385 cggctttgccgctgggct 23402
||||||||||||||||||
Sbjct: 270 cggctttgccgctgggct 253
>IS1474
Length = 2633
Score = 36.2 bits (18), Expect = 3.4
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 5740 cgacccggccaccggcga 5757
||||||||||||||||||
Sbjct: 703 cgacccggccaccggcga 720
>IS1248B
Length = 830
Score = 36.2 bits (18), Expect = 3.4
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 20283 tggtcggcggccagcccg 20300
||||||||||||||||||
Sbjct: 314 tggtcggcggccagcccg 297
>IS1248A
Length = 832
Score = 36.2 bits (18), Expect = 3.4
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 20283 tggtcggcggccagcccg 20300
||||||||||||||||||
Sbjct: 315 tggtcggcggccagcccg 298
>IS1188
Length = 1691
Score = 36.2 bits (18), Expect = 3.4
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 25001 agaggtcggcgccttcac 25018
||||||||||||||||||
Sbjct: 1298 agaggtcggcgccttcac 1315
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_24_length_38652_cov_63.9138_ID_5216
(38,652 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISAnsp12 | IS66 | Anaeromyxobacter sp. | 42 | 0.053 | |
| ISGeob7 | IS5 | IS427 | Geodermatophilus obscurus | 40 | 0.21 |
| ISPfr9 | IS30 | Propionibacterium freudenreichii | 40 | 0.21 | |
| ISAar43 | IS3 | IS407 | Arthrobacter arilaitensis | 40 | 0.21 |
| ISMdi10 | IS110 | IS1111 | Methylobacterium dichloromethanicum | 40 | 0.21 |
| ISHti13 | IS4 | ISH8 | Halorhabdus tiamatea | 38 | 0.83 |
| ISHna1 | IS200/IS605 | IS1341 | Haloplanus natans | 38 | 0.83 |
| ISNpe25 | IS66 | ISBst12 | Natrinema pellirubrum | 38 | 0.83 |
| ISNpe24 | IS66 | ISBst12 | Natrinema pellirubrum | 38 | 0.83 |
| ISNpe8 | IS66 | ISBst12 | Natrinema pellirubrum | 38 | 0.83 |
| ISHme2 | IS4 | ISH8 | Haloferax mediterranei | 38 | 0.83 |
| ISAzs31 | IS630 | Azospirillum sp. | 38 | 0.83 | |
| ISAzs17 | Tn3 | Azospirillum sp. | 38 | 0.83 | |
| ISGeob3 | IS5 | ISL2 | Geodermatophilus obscurus | 38 | 0.83 |
| ISHwa10 | IS66 | ISBst12 | Haloquadratum walsbyi | 38 | 0.83 |
| ISFsp13 | ISAzo13 | Frankia sp. | 38 | 0.83 | |
| ISFsp12 | ISAzo13 | Frankia sp. | 38 | 0.83 | |
| ISArsp6 | Tn3 | Arthrobacter sp. | 38 | 0.83 | |
| ISAau2 | IS21 | Arthrobacter aurescens | 38 | 0.83 | |
| ISAde3 | IS3 | IS407 | Anaeromyxobacter dehalogenans | 38 | 0.83 |
| ISMex24 | ISL3 | Methylobacterium extorquens | 38 | 0.83 | |
| ISMex22 | Tn3 | Methylobacterium extorquens | 38 | 0.83 | |
| ISAzo14 | IS1634 | Azoarcus sp. | 38 | 0.83 | |
| ISStau2 | IS66 | ISBst12 | Stigmatella aurantiaca | 38 | 0.83 |
| ISDha7 | IS3 | IS3 | Desulfitobacterium hafniense | 38 | 0.83 |
| ISH10B | IS66 | ISBst12 | Halobacterium sp | 38 | 0.83 |
| ISH8E | IS4 | ISH8 | Halobacterium sp. | 38 | 0.83 |
| ISH8C | IS4 | ISH8 | Halobacterium sp | 38 | 0.83 |
| ISH8B | IS4 | ISH8 | Halobacterium sp | 38 | 0.83 |
| ISH10 | IS66 | ISBst12 | Halobacterium sp | 38 | 0.83 |
| IS1141 | IS3 | IS3 | Mycobacterium intracellulare | 38 | 0.83 |
| TnXo19 | Tn3 | Xanthomonas oryzae | 36 | 3.3 | |
| ISMno16 | IS110 | IS1111 | Methylobacterium nodulans | 36 | 3.3 |
| ISHwa21 | IS200/IS605 | IS1341 | Haloquadratum walsbyi | 36 | 3.3 |
| ISNamo25 | IS200/IS605 | IS1341 | Natronomonas moolapensis | 36 | 3.3 |
| TnAs2 | Tn3 | Aeromonas salmonicida | 36 | 3.3 | |
| TnShfr1 | Tn3 | Shewanella frigidimarina | 36 | 3.3 | |
| ISBj11 | IS21 | Bradyrhizobium japonicum | 36 | 3.3 | |
| ISIde2 | IS21 | Ideonella dechloratans | 36 | 3.3 | |
| ISSiac5 | ISLre2 | Singulisphaera acidiphila | 36 | 3.3 | |
| ISAzs13 | ISL3 | Azospirillum sp. | 36 | 3.3 | |
| ISDha14 | IS5 | IS5 | Desulfitobacterium hafniense | 36 | 3.3 |
| ISMtsp8 | IS21 | Methylobacterium sp. | 36 | 3.3 | |
| ISNml2 | IS1380 | Nakamurella multipartita | 36 | 3.3 | |
| ISMex39 | IS21 | Methylobacterium extorquens | 36 | 3.3 | |
| ISMex41 | IS630 | Methylobacterium extorquens | 36 | 3.3 | |
| ISMdi1 | IS630 | Methylobacterium dichloromethanicum | 36 | 3.3 | |
| ISCARN58 | IS21 | Metagenomic data from CARNOULES | 36 | 3.3 | |
| ISThsp9 | Tn3 | Thiomonas sp. | 36 | 3.3 | |
| ISCARN35 | IS4 | IS4 | Metagenomic data from CARNOULES | 36 | 3.3 |
| ISCARN26 | IS110 | Metagenomic data from CARNOULES | 36 | 3.3 | |
| ISCARN14 | IS5 | IS1031 | Metagenomic data from CARNOULES | 36 | 3.3 |
| ISMno4 | IS66 | ISBst12 | Methylobacterium nodulans | 36 | 3.3 |
| ISStac1 | IS110 | IS1111 | Streptomyces aculeolatus | 36 | 3.3 |
| ISRpa2 | IS3 | IS407 | Rhodopseudomonas palustris | 36 | 3.3 |
| ISMysp3 | IS3 | IS51 | Mycobacterium sp. | 36 | 3.3 |
| ISOba1 | IS3 | IS407 | Oceanicola batsensis | 36 | 3.3 |
| ISAusp1 | IS1595 | ISNha5 | Aurantimonas sp. | 36 | 3.3 |
| ISEc15 | IS3 | IS51 | Escherichia coli | 36 | 3.3 |
| ISMyma4 | IS481 | - | Mycobacterium marinum | 36 | 3.3 |
| ISDra6 | IS630 | Deinococcus radiodurans | 36 | 3.3 | |
| ISLxx3 | IS21 | Leifsonia xyli | 36 | 3.3 | |
| ISRm2 | IS66 | Sinorhizobium meliloti | 36 | 3.3 | |
| ISPpu7 | IS21 | - | Pseudomonas putida | 36 | 3.3 |
| ISSme3 | IS66 | Sinorhizobium medicae | 36 | 3.3 | |
| IS117 | IS110 | - | Streptomyces coelicolor | 36 | 3.3 |
| IS110 | IS110 | - | Streptomyces coelicolor | 36 | 3.3 |
| IS1071 | Tn3 | - | Alcaligenes sp | 36 | 3.3 |
>ISAnsp12
Length = 2926
Score = 42.1 bits (21), Expect = 0.053
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 23950 gccagctcgaggagctcgtcg 23970
|||||||||||||||||||||
Sbjct: 384 gccagctcgaggagctcgtcg 364
Score = 40.1 bits (20), Expect = 0.21
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 21587 gctcgtcgccgccggccggcgcga 21610
|||||||||||||||||| |||||
Sbjct: 371 gctcgtcgccgccggccgccgcga 348
>ISGeob7
Length = 883
Score = 40.1 bits (20), Expect = 0.21
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11397 tggtcgacgcggtgccgccg 11416
||||||||||||||||||||
Sbjct: 552 tggtcgacgcggtgccgccg 571
>ISPfr9
Length = 1484
Score = 40.1 bits (20), Expect = 0.21
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 28807 acctgatcatcggcaccggc 28826
||||||||||||||||||||
Sbjct: 963 acctgatcatcggcaccggc 982
>ISAar43
Length = 1247
Score = 40.1 bits (20), Expect = 0.21
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 2991 cacctcgaggacctcgtcgc 3010
||||||||||||||||||||
Sbjct: 866 cacctcgaggacctcgtcgc 885
>ISMdi10
Length = 1186
Score = 40.1 bits (20), Expect = 0.21
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1581 tgctcgacgagcacggcaag 1600
||||||||||||||||||||
Sbjct: 141 tgctcgacgagcacggcaag 160
>ISHti13
Length = 1403
Score = 38.2 bits (19), Expect = 0.83
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 22897 cggacgccgacgacgcgga 22915
|||||||||||||||||||
Sbjct: 930 cggacgccgacgacgcgga 912
>ISHna1
Length = 1456
Score = 38.2 bits (19), Expect = 0.83
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 32170 gatggtgtcacgcaccatc 32188
|||||||||||||||||||
Sbjct: 325 gatggtgtcacgcaccatc 307
>ISNpe25
Length = 1626
Score = 38.2 bits (19), Expect = 0.83
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 37675 cgctgcgcgcgccggtcgc 37693
|||||||||||||||||||
Sbjct: 838 cgctgcgcgcgccggtcgc 856
>ISNpe24
Length = 1605
Score = 38.2 bits (19), Expect = 0.83
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 37675 cgctgcgcgcgccggtcgc 37693
|||||||||||||||||||
Sbjct: 817 cgctgcgcgcgccggtcgc 835
>ISNpe8
Length = 1650
Score = 38.2 bits (19), Expect = 0.83
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 37675 cgctgcgcgcgccggtcgc 37693
|||||||||||||||||||
Sbjct: 862 cgctgcgcgcgccggtcgc 880
>ISHme2
Length = 1403
Score = 38.2 bits (19), Expect = 0.83
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 22897 cggacgccgacgacgcgga 22915
|||||||||||||||||||
Sbjct: 930 cggacgccgacgacgcgga 912
>ISAzs31
Length = 1160
Score = 38.2 bits (19), Expect = 0.83
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 2371 cgacctccagatcggtgac 2389
|||||||||||||||||||
Sbjct: 1015 cgacctccagatcggtgac 997
>ISAzs17
Length = 7252
Score = 38.2 bits (19), Expect = 0.83
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 4742 gctgggcttcccgaccgcc 4760
|||||||||||||||||||
Sbjct: 3476 gctgggcttcccgaccgcc 3458
>ISGeob3
Length = 970
Score = 38.2 bits (19), Expect = 0.83
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 3169 caaggccgccggctggacc 3187
|||||||||||||||||||
Sbjct: 439 caaggccgccggctggacc 457
>ISHwa10
Length = 1598
Score = 38.2 bits (19), Expect = 0.83
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 37675 cgctgcgcgcgccggtcgc 37693
|||||||||||||||||||
Sbjct: 810 cgctgcgcgcgccggtcgc 828
>ISFsp13
Length = 1724
Score = 38.2 bits (19), Expect = 0.83
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 35038 gctgctcggcgagccggcg 35056
|||||||||||||||||||
Sbjct: 430 gctgctcggcgagccggcg 412
>ISFsp12
Length = 1730
Score = 38.2 bits (19), Expect = 0.83
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 35038 gctgctcggcgagccggcg 35056
|||||||||||||||||||
Sbjct: 430 gctgctcggcgagccggcg 412
>ISArsp6
Length = 26712
Score = 38.2 bits (19), Expect = 0.83
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 30992 cgctcagcgttggtgaagg 31010
|||||||||||||||||||
Sbjct: 11304 cgctcagcgttggtgaagg 11286
>ISAau2
Length = 2222
Score = 38.2 bits (19), Expect = 0.83
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 3759 cgctgcggcggacccgcgt 3777
|||||||||||||||||||
Sbjct: 1223 cgctgcggcggacccgcgt 1241
>ISAde3
Length = 1183
Score = 38.2 bits (19), Expect = 0.83
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1861 cgaggcgctcgaggacgcg 1879
|||||||||||||||||||
Sbjct: 831 cgaggcgctcgaggacgcg 813
>ISMex24
Length = 1677
Score = 38.2 bits (19), Expect = 0.83
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 16171 gcggccggcgcgtcgagcgccgg 16193
|||||||||||||||||| ||||
Sbjct: 271 gcggccggcgcgtcgagctccgg 293
>ISMex22
Length = 3864
Score = 38.2 bits (19), Expect = 0.83
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 30302 tgggcgagcgcctcgtcgccggc 30324
||||||||||||||| |||||||
Sbjct: 3260 tgggcgagcgcctcgacgccggc 3282
>ISAzo14
Length = 1925
Score = 38.2 bits (19), Expect = 0.83
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 10284 ccgagatcgagatcggccc 10302
|||||||||||||||||||
Sbjct: 1560 ccgagatcgagatcggccc 1578
>ISStau2
Length = 1585
Score = 38.2 bits (19), Expect = 0.83
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 5982 ccggcatcatcgtgctgct 6000
|||||||||||||||||||
Sbjct: 614 ccggcatcatcgtgctgct 632
>ISDha7
Length = 1499
Score = 38.2 bits (19), Expect = 0.83
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 37058 cgtctcggctgacaccgcc 37076
|||||||||||||||||||
Sbjct: 1286 cgtctcggctgacaccgcc 1268
>ISH10B
Length = 1629
Score = 38.2 bits (19), Expect = 0.83
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 37675 cgctgcgcgcgccggtcgc 37693
|||||||||||||||||||
Sbjct: 841 cgctgcgcgcgccggtcgc 859
>ISH8E
Length = 1403
Score = 38.2 bits (19), Expect = 0.83
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 22897 cggacgccgacgacgcgga 22915
|||||||||||||||||||
Sbjct: 930 cggacgccgacgacgcgga 912
>ISH8C
Length = 1403
Score = 38.2 bits (19), Expect = 0.83
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 22897 cggacgccgacgacgcgga 22915
|||||||||||||||||||
Sbjct: 930 cggacgccgacgacgcgga 912
>ISH8B
Length = 1403
Score = 38.2 bits (19), Expect = 0.83
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 22897 cggacgccgacgacgcgga 22915
|||||||||||||||||||
Sbjct: 930 cggacgccgacgacgcgga 912
>ISH10
Length = 1584
Score = 38.2 bits (19), Expect = 0.83
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 37675 cgctgcgcgcgccggtcgc 37693
|||||||||||||||||||
Sbjct: 796 cgctgcgcgcgccggtcgc 814
>IS1141
Length = 1588
Score = 38.2 bits (19), Expect = 0.83
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 5007 cggttcgactcgatcgagg 5025
|||||||||||||||||||
Sbjct: 1281 cggttcgactcgatcgagg 1299
>TnXo19
Length = 18767
Score = 36.2 bits (18), Expect = 3.3
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 29260 ccgaacggggcgccatcg 29277
||||||||||||||||||
Sbjct: 9355 ccgaacggggcgccatcg 9372
>ISMno16
Length = 1404
Score = 36.2 bits (18), Expect = 3.3
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 31492 ggccgagttcgggccggcggcg 31513
|||||||||||||| |||||||
Sbjct: 512 ggccgagttcgggctggcggcg 533
>ISHwa21
Length = 1590
Score = 36.2 bits (18), Expect = 3.3
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 4472 cgccgtcgccgtcgtcgt 4489
||||||||||||||||||
Sbjct: 1303 cgccgtcgccgtcgtcgt 1286
>ISNamo25
Length = 1529
Score = 36.2 bits (18), Expect = 3.3
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 637 cgtgcgggtgcggcgtgg 654
||||||||||||||||||
Sbjct: 1153 cgtgcgggtgcggcgtgg 1170
>TnAs2
Length = 8650
Score = 36.2 bits (18), Expect = 3.3
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 25754 cgaggtgctgcgcggcacgaac 25775
||||||||||||||||| ||||
Sbjct: 6892 cgaggtgctgcgcggcatgaac 6913
>TnShfr1
Length = 5131
Score = 36.2 bits (18), Expect = 3.3
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 25754 cgaggtgctgcgcggcacgaac 25775
||||||||||||||||| ||||
Sbjct: 3373 cgaggtgctgcgcggcatgaac 3394
>ISBj11
Length = 2649
Score = 36.2 bits (18), Expect = 3.3
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 33702 gatcatcggcacggccgcgaag 33723
|||||||||||||||| |||||
Sbjct: 1971 gatcatcggcacggcctcgaag 1950
>ISIde2
Length = 2529
Score = 36.2 bits (18), Expect = 3.3
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 27795 gcgccgaggacggcgacg 27812
||||||||||||||||||
Sbjct: 658 gcgccgaggacggcgacg 641
>ISSiac5
Length = 1429
Score = 36.2 bits (18), Expect = 3.3
Identities = 24/26 (92%)
Strand = Plus / Minus
Query: 4856 caccctgccggcggcgatctcggtcg 4881
||||| ||||||||||||| ||||||
Sbjct: 385 cacccggccggcggcgatcacggtcg 360
>ISAzs13
Length = 1769
Score = 36.2 bits (18), Expect = 3.3
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 13125 catcgtcgtcgatctcga 13142
||||||||||||||||||
Sbjct: 603 catcgtcgtcgatctcga 620
>ISDha14
Length = 1692
Score = 36.2 bits (18), Expect = 3.3
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 9863 gccaagctgcgcaatgcc 9880
||||||||||||||||||
Sbjct: 1450 gccaagctgcgcaatgcc 1467
>ISMtsp8
Length = 2371
Score = 36.2 bits (18), Expect = 3.3
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 10003 gtggcgtgccggcgggcg 10020
||||||||||||||||||
Sbjct: 980 gtggcgtgccggcgggcg 963
>ISNml2
Length = 1689
Score = 36.2 bits (18), Expect = 3.3
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 34080 ccggtcggcgaaggtgccgctg 34101
|||||||||||||| |||||||
Sbjct: 537 ccggtcggcgaaggcgccgctg 558
>ISMex39
Length = 2456
Score = 36.2 bits (18), Expect = 3.3
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 25290 gaccgtgacggtcgtgcc 25307
||||||||||||||||||
Sbjct: 537 gaccgtgacggtcgtgcc 520
>ISMex41
Length = 1048
Score = 36.2 bits (18), Expect = 3.3
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 24926 ggcctcgacctcacggcg 24943
||||||||||||||||||
Sbjct: 142 ggcctcgacctcacggcg 159
>ISMdi1
Length = 1058
Score = 36.2 bits (18), Expect = 3.3
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 36956 cgaggcgcaggccgagct 36973
||||||||||||||||||
Sbjct: 281 cgaggcgcaggccgagct 298
>ISCARN58
Length = 2436
Score = 36.2 bits (18), Expect = 3.3
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 10219 gcgcgaggtcgacgactg 10236
||||||||||||||||||
Sbjct: 1584 gcgcgaggtcgacgactg 1567
>ISThsp9
Length = 6215
Score = 36.2 bits (18), Expect = 3.3
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 3080 cccctacaagaaaccggc 3097
||||||||||||||||||
Sbjct: 396 cccctacaagaaaccggc 379
>ISCARN35
Length = 1455
Score = 36.2 bits (18), Expect = 3.3
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 35041 gctcggcgagccggcgca 35058
||||||||||||||||||
Sbjct: 414 gctcggcgagccggcgca 397
>ISCARN26
Length = 1214
Score = 36.2 bits (18), Expect = 3.3
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 16987 tcggcatcgacgtcgtcg 17004
||||||||||||||||||
Sbjct: 773 tcggcatcgacgtcgtcg 756
>ISCARN14
Length = 1226
Score = 36.2 bits (18), Expect = 3.3
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 15626 cttcggcgcacaggcgtc 15643
||||||||||||||||||
Sbjct: 208 cttcggcgcacaggcgtc 225
>ISMno4
Length = 1385
Score = 36.2 bits (18), Expect = 3.3
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 10745 aggtcagcgacgacccgg 10762
||||||||||||||||||
Sbjct: 933 aggtcagcgacgacccgg 950
>ISStac1
Length = 1484
Score = 36.2 bits (18), Expect = 3.3
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 19164 gtcaccgtcggcgacggc 19181
||||||||||||||||||
Sbjct: 1141 gtcaccgtcggcgacggc 1158
>ISRpa2
Length = 1265
Score = 36.2 bits (18), Expect = 3.3
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 21350 ggagcgctacgcgggcct 21367
||||||||||||||||||
Sbjct: 1056 ggagcgctacgcgggcct 1039
>ISMysp3
Length = 1362
Score = 36.2 bits (18), Expect = 3.3
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 24235 cggtcccggtgggcggcg 24252
||||||||||||||||||
Sbjct: 406 cggtcccggtgggcggcg 389
>ISOba1
Length = 1271
Score = 36.2 bits (18), Expect = 3.3
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 17151 gtcctgctgcgccgcgag 17168
||||||||||||||||||
Sbjct: 528 gtcctgctgcgccgcgag 545
>ISAusp1
Length = 3418
Score = 36.2 bits (18), Expect = 3.3
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 32872 ggcgccgtcgatctcgac 32889
||||||||||||||||||
Sbjct: 1498 ggcgccgtcgatctcgac 1481
>ISEc15
Length = 1230
Score = 36.2 bits (18), Expect = 3.3
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 31469 gtgaccccgagcccgtag 31486
||||||||||||||||||
Sbjct: 5 gtgaccccgagcccgtag 22
>ISMyma4
Length = 1085
Score = 36.2 bits (18), Expect = 3.3
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 29360 cgccgaggcgatgggcgt 29377
||||||||||||||||||
Sbjct: 191 cgccgaggcgatgggcgt 208
>ISDra6
Length = 1072
Score = 36.2 bits (18), Expect = 3.3
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 34651 actcctcggtgaggccgaggag 34672
|||||||||||| |||||||||
Sbjct: 1047 actcctcggtgatgccgaggag 1026
>ISLxx3
Length = 2637
Score = 36.2 bits (18), Expect = 3.3
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 22775 cgtcgtcgcggtcgaggc 22792
||||||||||||||||||
Sbjct: 1537 cgtcgtcgcggtcgaggc 1554
>ISRm2
Length = 2593
Score = 36.2 bits (18), Expect = 3.3
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 3551 ggcggggtcgtcgacctgccgg 3572
|||| |||||||||||||||||
Sbjct: 1170 ggcgaggtcgtcgacctgccgg 1191
>ISPpu7
Length = 2598
Score = 36.2 bits (18), Expect = 3.3
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 31713 ccggcagcagcggcaggt 31730
||||||||||||||||||
Sbjct: 1678 ccggcagcagcggcaggt 1661
>ISSme3
Length = 3149
Score = 36.2 bits (18), Expect = 3.3
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 34567 agcgcctcggcgacggca 34584
||||||||||||||||||
Sbjct: 3036 agcgcctcggcgacggca 3019
>IS117
Length = 2527
Score = 36.2 bits (18), Expect = 3.3
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 20244 cgacgtcgccatcgtcga 20261
||||||||||||||||||
Sbjct: 1704 cgacgtcgccatcgtcga 1687
>IS110
Length = 1558
Score = 36.2 bits (18), Expect = 3.3
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 19164 gtcaccgtcggcgacggc 19181
||||||||||||||||||
Sbjct: 1141 gtcaccgtcggcgacggc 1158
>IS1071
Length = 3201
Score = 36.2 bits (18), Expect = 3.3
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 19313 ctcagcatcgggcaccgcacct 19334
||||||||| ||||||||||||
Sbjct: 1168 ctcagcatctggcaccgcacct 1147
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_25_length_37485_cov_64.9588_ID_5218
(37,485 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISRssp8 | IS1380 | Roseovarius sp. | 42 | 0.052 | |
| ISPebe1 | IS256 | Pelagibaca bermudensis | 40 | 0.20 | |
| ISApr6 | IS66 | Alpha proteobacterium | 40 | 0.20 | |
| IS1629 | ISAs1 | - | Streptomyces sp. | 40 | 0.20 |
| TnAs2 | Tn3 | Aeromonas salmonicida | 38 | 0.81 | |
| ISNmo4 | IS5 | IS5 | Nitrococcus mobilis | 38 | 0.81 |
| ISNtsp1 | IS5 | IS5 | Nitrosomonas sp. | 38 | 0.81 |
| ISMno13 | IS66 | Methylobacterium nodulans | 38 | 0.81 | |
| ISArsp6 | Tn3 | Arthrobacter sp. | 38 | 0.81 | |
| ISAar21 | IS4 | IS4 | Arthrobacter arilaitensis | 38 | 0.81 |
| ISMex37 | IS3 | IS150 | Methylobacterium extorquens | 38 | 0.81 |
| ISMex26 | ISL3 | Methylobacterium extorquens | 38 | 0.81 | |
| ISSsp4 | IS21 | Sphingomonas sp. | 38 | 0.81 | |
| ISvAR158_1 | IS607 | Virus AR158 | 38 | 0.81 | |
| ISBlo4 | IS30 | Bifidobacterium longum | 38 | 0.81 | |
| IS117 | IS110 | - | Streptomyces coelicolor | 38 | 0.81 |
| ISHwa24 | IS200/IS605 | IS1341 | Haloquadratum walsbyi | 36 | 3.2 |
| ISHma15 | IS200/IS605 | IS1341 | Haloarcula marismortui | 36 | 3.2 |
| ISMyma8 | IS3 | IS407 | Mycobacterium marinum | 36 | 3.2 |
| ISHvo5 | IS1595 | ISH4 | Haloferax volcanii | 36 | 3.2 |
| ISKpn15 | IS66 | ISBst12 | Klebsiella pneumonia | 36 | 3.2 |
| ISAzs36 | IS481 | Azospirillum sp. | 36 | 3.2 | |
| ISStsp6 | IS5 | ISL2 | Streptomyces sp | 36 | 3.2 |
| ISAmu1 | IS1595 | ISNwi1 | Akkermansia muciniphila | 36 | 3.2 |
| ISMtsp8 | IS21 | Methylobacterium sp. | 36 | 3.2 | |
| ISPfr5 | IS481 | Propionibacterium freudenreichii | 36 | 3.2 | |
| ISAar6 | IS256 | Arthrobacter arilaitensis | 36 | 3.2 | |
| ISAde1 | IS66 | Anaeromyxobacter dehalogenans | 36 | 3.2 | |
| ISAnsp5 | IS21 | Anaeromyxobacter sp. | 36 | 3.2 | |
| ISAnsp4 | IS21 | Anaeromyxobacter sp. | 36 | 3.2 | |
| ISMno4 | IS66 | ISBst12 | Methylobacterium nodulans | 36 | 3.2 |
| ISDds9 | IS5 | IS427 | Deinococcus deserti | 36 | 3.2 |
| ISCku7 | IS66 | ISBst12 | Candidatus Kuenenia stuttgartiensis | 36 | 3.2 |
| ISMsm2 | IS630 | Mycobacterium smegmatis | 36 | 3.2 | |
| ISAzo5 | IS4 | IS50 | Azoarcus sp. | 36 | 3.2 |
| ISPpu13 | IS66 | Pseudomonas putida | 36 | 3.2 | |
| ISRl1 | IS66 | - | Rhizobium leguminosarum | 36 | 3.2 |
| ISPa42 | Tn3 | Pseudomonas aeruginosa | 36 | 3.2 | |
| IS6120 | IS256 | - | Mycobacterium smegmatis | 36 | 3.2 |
| ISXfu1 | IS5 | IS5 | Xanthomonas fuscans | 36 | 3.2 |
| IS1415 | IS21 | - | Rhodococcus erythropolis | 36 | 3.2 |
| IS112 | IS5 | ISL2 | Streptomyces albus | 36 | 3.2 |
| IS1096 | ISL3 | - | Mycobacterium smegmatis | 36 | 3.2 |
>ISRssp8
Length = 1614
Score = 42.1 bits (21), Expect = 0.052
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 33898 ccccacgagccggccttgaccgtcg 33922
||||||||||||||||| |||||||
Sbjct: 689 ccccacgagccggccttcaccgtcg 665
>ISPebe1
Length = 1363
Score = 40.1 bits (20), Expect = 0.20
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 31439 catgaggatcgcgccgacga 31458
||||||||||||||||||||
Sbjct: 1188 catgaggatcgcgccgacga 1169
>ISApr6
Length = 2479
Score = 40.1 bits (20), Expect = 0.20
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 35170 tgccgaggccgacgccggcg 35189
||||||||||||||||||||
Sbjct: 1155 tgccgaggccgacgccggcg 1174
Score = 40.1 bits (20), Expect = 0.20
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 34711 cgatgcggccgtcgtcgagg 34730
||||||||||||||||||||
Sbjct: 2209 cgatgcggccgtcgtcgagg 2190
>IS1629
Length = 1462
Score = 40.1 bits (20), Expect = 0.20
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 9518 cgtggcggccgtggccgcgg 9537
||||||||||||||||||||
Sbjct: 1022 cgtggcggccgtggccgcgg 1003
>TnAs2
Length = 8650
Score = 38.2 bits (19), Expect = 0.81
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 33695 gcccgaacaggcagcagatctgcggca 33721
||||||||||| ||| |||||||||||
Sbjct: 5525 gcccgaacaggtagccgatctgcggca 5551
>ISNmo4
Length = 1176
Score = 38.2 bits (19), Expect = 0.81
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 19474 aggccgtggcgcgccagcaggcg 19496
|||||||||||| ||||||||||
Sbjct: 421 aggccgtggcgctccagcaggcg 399
>ISNtsp1
Length = 1497
Score = 38.2 bits (19), Expect = 0.81
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 34432 tggccgacacggccgcctc 34450
|||||||||||||||||||
Sbjct: 527 tggccgacacggccgcctc 509
>ISMno13
Length = 2459
Score = 38.2 bits (19), Expect = 0.81
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 21133 cggccccggtgaacagctc 21151
|||||||||||||||||||
Sbjct: 143 cggccccggtgaacagctc 125
>ISArsp6
Length = 26712
Score = 38.2 bits (19), Expect = 0.81
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 16749 cgggcgagctggccgccgc 16767
|||||||||||||||||||
Sbjct: 17487 cgggcgagctggccgccgc 17469
>ISAar21
Length = 1396
Score = 38.2 bits (19), Expect = 0.81
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 3020 gtcggcgccggcgagcagc 3038
|||||||||||||||||||
Sbjct: 160 gtcggcgccggcgagcagc 178
>ISMex37
Length = 1510
Score = 38.2 bits (19), Expect = 0.81
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 8716 gcgcttgccggcgtcgagg 8734
|||||||||||||||||||
Sbjct: 304 gcgcttgccggcgtcgagg 286
>ISMex26
Length = 1676
Score = 38.2 bits (19), Expect = 0.81
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 34937 ggccgtgacggtgacgacg 34955
|||||||||||||||||||
Sbjct: 1312 ggccgtgacggtgacgacg 1330
>ISSsp4
Length = 2558
Score = 38.2 bits (19), Expect = 0.81
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 10892 gcgcgtcgtcgtccgtggg 10910
|||||||||||||||||||
Sbjct: 2444 gcgcgtcgtcgtccgtggg 2462
>ISvAR158_1
Length = 1987
Score = 38.2 bits (19), Expect = 0.81
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 34651 cgtagtcggtggcgagctc 34669
|||||||||||||||||||
Sbjct: 1424 cgtagtcggtggcgagctc 1406
>ISBlo4
Length = 1399
Score = 38.2 bits (19), Expect = 0.81
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 36390 cgaggacgtgcgcctgctggacg 36412
|||| ||||||||||||||||||
Sbjct: 156 cgagtacgtgcgcctgctggacg 178
>IS117
Length = 2527
Score = 38.2 bits (19), Expect = 0.81
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 5747 ccgatctcggcgagcaccc 5765
|||||||||||||||||||
Sbjct: 856 ccgatctcggcgagcaccc 874
>ISHwa24
Length = 1500
Score = 36.2 bits (18), Expect = 3.2
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 26585 ctcgccgtggccgtcttc 26602
||||||||||||||||||
Sbjct: 812 ctcgccgtggccgtcttc 795
>ISHma15
Length = 1702
Score = 36.2 bits (18), Expect = 3.2
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 31175 tgctacgggacctgttgg 31192
||||||||||||||||||
Sbjct: 357 tgctacgggacctgttgg 374
>ISMyma8
Length = 1247
Score = 36.2 bits (18), Expect = 3.2
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 30022 ctgctcaacgcgtggcgc 30039
||||||||||||||||||
Sbjct: 1054 ctgctcaacgcgtggcgc 1071
>ISHvo5
Length = 1001
Score = 36.2 bits (18), Expect = 3.2
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 12782 ctcgcagcggacctgctc 12799
||||||||||||||||||
Sbjct: 124 ctcgcagcggacctgctc 141
>ISKpn15
Length = 1534
Score = 36.2 bits (18), Expect = 3.2
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 28853 tcgaccgcatcgccgagc 28870
||||||||||||||||||
Sbjct: 181 tcgaccgcatcgccgagc 198
>ISAzs36
Length = 2622
Score = 36.2 bits (18), Expect = 3.2
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 5258 agagcggcgatgatctcg 5275
||||||||||||||||||
Sbjct: 259 agagcggcgatgatctcg 242
>ISStsp6
Length = 1476
Score = 36.2 bits (18), Expect = 3.2
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 12989 cggcagctcgccccgctg 13006
||||||||||||||||||
Sbjct: 837 cggcagctcgccccgctg 854
>ISAmu1
Length = 2422
Score = 36.2 bits (18), Expect = 3.2
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 27054 tcgcaaggtggcggtcaa 27071
||||||||||||||||||
Sbjct: 1841 tcgcaaggtggcggtcaa 1824
>ISMtsp8
Length = 2371
Score = 36.2 bits (18), Expect = 3.2
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 505 cacgaagccccgctcggccagg 526
|||||||||| |||||||||||
Sbjct: 1742 cacgaagcccagctcggccagg 1721
>ISPfr5
Length = 1329
Score = 36.2 bits (18), Expect = 3.2
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 5834 tcggcgagggcgtggacgcggg 5855
||||||||||| ||||||||||
Sbjct: 302 tcggcgagggcctggacgcggg 323
>ISAar6
Length = 1519
Score = 36.2 bits (18), Expect = 3.2
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 18075 cttcaccgcggccacgtc 18092
||||||||||||||||||
Sbjct: 1259 cttcaccgcggccacgtc 1242
>ISAde1
Length = 2957
Score = 36.2 bits (18), Expect = 3.2
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 22501 tcgcgatgctcctcgacg 22518
||||||||||||||||||
Sbjct: 750 tcgcgatgctcctcgacg 767
>ISAnsp5
Length = 2192
Score = 36.2 bits (18), Expect = 3.2
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 29915 ccaagggcaagaccgagt 29932
||||||||||||||||||
Sbjct: 811 ccaagggcaagaccgagt 828
>ISAnsp4
Length = 2195
Score = 36.2 bits (18), Expect = 3.2
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 29915 ccaagggcaagaccgagt 29932
||||||||||||||||||
Sbjct: 817 ccaagggcaagaccgagt 834
>ISMno4
Length = 1385
Score = 36.2 bits (18), Expect = 3.2
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 34434 gccgacacggccgcctcg 34451
||||||||||||||||||
Sbjct: 669 gccgacacggccgcctcg 652
>ISDds9
Length = 1254
Score = 36.2 bits (18), Expect = 3.2
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 3041 ggacaggacggtcgggatgacg 3062
||||||||||||||||| ||||
Sbjct: 298 ggacaggacggtcgggaagacg 277
>ISCku7
Length = 2368
Score = 36.2 bits (18), Expect = 3.2
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 23037 aacaccaagtcgggggtc 23054
||||||||||||||||||
Sbjct: 1705 aacaccaagtcgggggtc 1722
>ISMsm2
Length = 1126
Score = 36.2 bits (18), Expect = 3.2
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 4429 tgatcaccgcgacgttgg 4446
||||||||||||||||||
Sbjct: 333 tgatcaccgcgacgttgg 350
>ISAzo5
Length = 1478
Score = 36.2 bits (18), Expect = 3.2
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 6057 gatcggcgcgccggccgg 6074
||||||||||||||||||
Sbjct: 953 gatcggcgcgccggccgg 970
>ISPpu13
Length = 2370
Score = 36.2 bits (18), Expect = 3.2
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 36397 gtgcgcctgctggacggc 36414
||||||||||||||||||
Sbjct: 1334 gtgcgcctgctggacggc 1351
>ISRl1
Length = 2495
Score = 36.2 bits (18), Expect = 3.2
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 4730 ccggtcgatgacgagcag 4747
||||||||||||||||||
Sbjct: 1107 ccggtcgatgacgagcag 1124
>ISPa42
Length = 16941
Score = 36.2 bits (18), Expect = 3.2
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 33183 gtcggcgctgtcggtgaacagg 33204
||||||| ||||||||||||||
Sbjct: 2566 gtcggcggtgtcggtgaacagg 2545
>IS6120
Length = 1486
Score = 36.2 bits (18), Expect = 3.2
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 9613 ccacgtaggcggcgacct 9630
||||||||||||||||||
Sbjct: 277 ccacgtaggcggcgacct 260
>ISXfu1
Length = 1162
Score = 36.2 bits (18), Expect = 3.2
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 10654 cgtactccgcgtcgccga 10671
||||||||||||||||||
Sbjct: 95 cgtactccgcgtcgccga 78
>IS1415
Length = 2580
Score = 36.2 bits (18), Expect = 3.2
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 30719 tggccgaggcgatcgacc 30736
||||||||||||||||||
Sbjct: 1721 tggccgaggcgatcgacc 1738
>IS112
Length = 883
Score = 36.2 bits (18), Expect = 3.2
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 12989 cggcagctcgccccgctg 13006
||||||||||||||||||
Sbjct: 243 cggcagctcgccccgctg 260
>IS1096
Length = 2259
Score = 36.2 bits (18), Expect = 3.2
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 16571 cacgtgctcgtggtcgaa 16588
||||||||||||||||||
Sbjct: 1712 cacgtgctcgtggtcgaa 1695
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_26_length_28141_cov_79.2661_ID_5220
(28,141 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISMav7 | IS1380 | Mycobacterium avium | 100 | 2e-19 | |
| ISMyma7 | IS1380 | - | Mycobacterium marinum | 98 | 8e-19 |
| ISMsm3 | IS1380 | Mycobacterium smegmatis | 94 | 1e-17 | |
| ISMyma2 | IS1380 | Mycobacterium marinum | 66 | 3e-09 | |
| ISFsp14 | IS1380 | Frankia sp. | 58 | 7e-07 | |
| ISNml2 | IS1380 | Nakamurella multipartita | 52 | 4e-05 | |
| ISStr1 | IS1380 | Salinispora tropica | 50 | 2e-04 | |
| ISFsp15 | IS1380 | Frankia sp. | 48 | 6e-04 | |
| IS1081 | IS256 | - | Mycobacterium bovis | 48 | 6e-04 |
| ISStsp3 | IS1380 | Streptomyces sp. | 44 | 0.010 | |
| ISCur1 | IS1380 | Corynebacterium urealyticum | 42 | 0.039 | |
| IS1676 | IS1380 | - | Rhodococcus erythropolis | 42 | 0.039 |
| ISMgi1 | IS1380 | Mycobacterium gilvum | 40 | 0.15 | |
| ISMno23 | IS91 | Methylobacterium nodulans | 38 | 0.61 | |
| ISThsp9 | Tn3 | Thiomonas sp. | 38 | 0.61 | |
| ISMk1 | ISNCY | - | Mycobacterium kansasii | 38 | 0.61 |
| IS1549 | IS1634 | - | Mycobacterium smegmatis | 38 | 0.61 |
| IS1480b | IS5 | IS1031 | Xanthomonas campestris | 38 | 0.61 |
| IS1480a | IS5 | IS1031 | Xanthomonas campestris | 38 | 0.61 |
| IS1162 | IS21 | - | Pseudomonas fluorescens | 38 | 0.61 |
| ISBlo17 | IS256 | IS1249 | Bifidobacterium longum | 36 | 2.4 |
| ISPkr1 | IS21 | Paracoccus koreensis | 36 | 2.4 | |
| ISRpa9 | IS5 | IS5 | Rhodopseudomonas palustris | 36 | 2.4 |
| ISRsp7 | IS1380 | Rhizobium sp. | 36 | 2.4 | |
| ISCARN85 | IS5 | IS427 | Metagenomic data from CARNOULES | 36 | 2.4 |
| ISAnsp3 | IS66 | Anaeromyxobacter sp. | 36 | 2.4 | |
| IS1557 | ISL3 | Mycobacterium tuberculosis | 36 | 2.4 | |
| ISPme1 | IS1380 | Paracoccus methylutens | 36 | 2.4 | |
| ISXc4 | Tn3 | - | Xanthomonas campestris | 36 | 2.4 |
| IS1535 | IS607 | Mycobacterium tuberculosis | 36 | 2.4 | |
| ISAeme8 | IS200/IS605 | IS605 | Aeromonas media | 34 | 9.5 |
| ISRel10 | ISNCY | IS1202 | Rhizobium etli | 34 | 9.5 |
| ISIde1 | ISL3 | Ideonella dechloratans | 34 | 9.5 | |
| ISHmu7 | IS200/IS605 | IS1341 | Halomicrobium mukohataei | 34 | 9.5 |
| ISRer3 | IS256 | Rhodococcus erythropolis | 34 | 9.5 | |
| ISHvo6 | IS1595 | ISH4 | Haloferax volcanii | 34 | 9.5 |
| ISStsp6 | IS5 | ISL2 | Streptomyces sp | 34 | 9.5 |
| ISGau1 | IS3 | IS3 | Gemmatimonas aurantiaca | 34 | 9.5 |
| ISPso1 | IS256 | Paracoccus solventivorans | 34 | 9.5 | |
| ISVsp3 | IS66 | Verrucomicrobium spinosum | 34 | 9.5 | |
| ISMtsp5 | IS3 | IS2 | Methylobacterium sp. | 34 | 9.5 |
| ISMpo6 | IS1182 | Methylobacterium populi | 34 | 9.5 | |
| ISCde1 | IS66 | Candidatus Desulforudis audaxviator | 34 | 9.5 | |
| ISKol11 | ISNCY | ISLbi1 | Kosmotoga olearia | 34 | 9.5 |
| ISAtu6 | IS66 | - | Agrobacterium tumefaciens | 34 | 9.5 |
| ISRer1 | IS1380 | Rhodococcus erythropolis | 34 | 9.5 | |
| ISMesp2 | IS1380 | Mesorhizobium sp. | 34 | 9.5 | |
| ISPlpa1 | IS1380 | Plesiocystis pacifica | 34 | 9.5 | |
| ISAar10 | IS1380 | Arthrobacter arilaitensis | 34 | 9.5 | |
| ISAar7 | IS21 | Arthrobacter arilaitensis | 34 | 9.5 | |
| ISAde3 | IS3 | IS407 | Anaeromyxobacter dehalogenans | 34 | 9.5 |
| ISMdi24 | IS5 | IS427 | Methylobacterium dichloromethanicum | 34 | 9.5 |
| ISMex35 | IS5 | IS5 | Methylobacterium extorquens | 34 | 9.5 |
| ISMex40 | IS5 | IS1031 | Methylobacterium extorquens | 34 | 9.5 |
| ISMdi7 | IS21 | Methylobacterium dichloromethanicum | 34 | 9.5 | |
| ISAzo18 | IS3 | IS150 | Azoarcus sp. | 34 | 9.5 |
| ISThsp8 | IS1634 | Thiomonas sp. | 34 | 9.5 | |
| ISCARN24 | IS21 | Metagenomic data from CARNOULES | 34 | 9.5 | |
| ISCARN15 | IS66 | Metagenomic data from CARNOULES | 34 | 9.5 | |
| ISBj7_B | IS66 | Bradyrhizobium japonicum | 34 | 9.5 | |
| ISXau4 | IS66 | Xanthobacter autotrophicus | 34 | 9.5 | |
| ISGdi4 | IS630 | Gluconacetobacter diazotrophicus | 34 | 9.5 | |
| ISAli10 | IS66 | Azospirillum lipoferum | 34 | 9.5 | |
| ISPa31 | IS3 | IS3 | Pseudomonas aeruginosa | 34 | 9.5 |
| ISRel3 | IS21 | Rhizobium etli | 34 | 9.5 | |
| ISRhosp5 | IS3 | IS51 | Rhodococcus sp. | 34 | 9.5 |
| ISSme2 | IS21 | Sinorhizobium medicae | 34 | 9.5 | |
| ISPsy28 | IS3 | IS3 | Pseudomonas syringae | 34 | 9.5 |
| ISFal1 | ISL3 | Frankia alni | 34 | 9.5 | |
| ISH18 | IS110 | IS1111 | Haloarcula marismortui | 34 | 9.5 |
| ISFsp1 | ISL3 | Frankia sp. | 34 | 9.5 | |
| ISAzsp1 | IS3 | IS51 | Azotobacter sp. | 34 | 9.5 |
| ISBmu3 | IS21 | Burkholderia multivorans | 34 | 9.5 | |
| ISLxx1 | IS21 | Leifsonia xyli | 34 | 9.5 | |
| ISBlo2 | IS21 | Bifidobacterium longum | 34 | 9.5 | |
| ISRso7 | IS256 | - | Ralstonia solanacearum | 34 | 9.5 |
| ISPpu4 | IS3 | IS3 | Pseudomonas putida | 34 | 9.5 |
| IS117 | IS110 | - | Streptomyces coelicolor | 34 | 9.5 |
| IS1166 | IS256 | - | Rhodococcus sp. | 34 | 9.5 |
| IS1164 | IS256 | - | Rhodococcus rhodochrous | 34 | 9.5 |
| IS1131 | IS66 | - | Agrobacterium tumefaciens | 34 | 9.5 |
| IS1110 | IS110 | - | Mycobacterium avium | 34 | 9.5 |
| IS1096 | ISL3 | - | Mycobacterium smegmatis | 34 | 9.5 |
>ISMav7
Length = 1691
Score = 99.6 bits (50), Expect = 2e-19
Identities = 86/98 (87%)
Strand = Plus / Plus
Query: 21587 tggaccgtccggagatcgccggcggggaggcgctggccgggctgctgcgggccgggaacg 21646
|||||||||| |||||| |||||||||| || ||||||||||||||||| |||| ||||
Sbjct: 642 tggaccgtcctgagatctccggcggggaagccctggccgggctgctgcgcaccggcaacg 701
Query: 21647 ccggcagcaacaccgccgccgaccacatcagcgtcctc 21684
||||| |||||||||| |||| ||||||| |||||||
Sbjct: 702 ccggctccaacaccgcctccgatcacatcatcgtcctc 739
Score = 71.9 bits (36), Expect = 4e-11
Identities = 64/72 (88%), Gaps = 1/72 (1%)
Strand = Plus / Plus
Query: 22287 cgcgcacgtcccggccctgtctcgctgcgagatcgccacgttccgctaccgcgtcctgca 22346
||||||| |||||||| || ||||| |||||||||||| ||||||||||| ||||||||
Sbjct: 1352 cgcgcacatcccggcc-tggctcgcgccgagatcgccaccttccgctaccgggtcctgca 1410
Query: 22347 cgtcgccgcccg 22358
|||||| |||||
Sbjct: 1411 cgtcgctgcccg 1422
Score = 48.1 bits (24), Expect = 6e-04
Identities = 70/84 (83%), Gaps = 1/84 (1%)
Strand = Plus / Plus
Query: 21988 cccggttgatcctgcgcaagggaacggccacaccccggcgcgcagctgacgttcaccgac 22047
||||| ||||||||||||| | |||| || || ||||| |||||| || ||||||||||
Sbjct: 1053 cccggctgatcctgcgcaaag-aacgcccgcatcccggtgcgcagttgcggttcaccgac 1111
Query: 22048 gtcgacgggcaccgggtcaccgcg 22071
| ||||||| ||||||||||||
Sbjct: 1112 gccgacgggatgcgggtcaccgcg 1135
Score = 46.1 bits (23), Expect = 0.002
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 21924 cgcgagggcgcctgggtggccgaggccaccg 21954
|||||||| |||||||| |||||||||||||
Sbjct: 989 cgcgagggggcctgggtcgccgaggccaccg 1019
Score = 44.1 bits (22), Expect = 0.010
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 22127 tgcggcaccggcaacacgcccgggtcgaggaccg 22160
|||||||||| || |||||||| |||||||||||
Sbjct: 1191 tgcggcaccgccagcacgcccgcgtcgaggaccg 1224
Score = 38.2 bits (19), Expect = 0.61
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 21002 gaaagtgcctgtcctgtaaggga 21024
|||||||||||||||| ||||||
Sbjct: 47 gaaagtgcctgtcctgcaaggga 69
Score = 34.2 bits (17), Expect = 9.5
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 21807 gtcgggttctccttcgg 21823
|||||||||||||||||
Sbjct: 881 gtcgggttctccttcgg 897
>ISMyma7
Length = 1694
Score = 97.6 bits (49), Expect = 8e-19
Identities = 88/101 (87%)
Strand = Plus / Plus
Query: 22315 gagatcgccacgttccgctaccgcgtcctgcacgtcgccgcccgcgtgacccggggagcc 22374
|||||| |||||||||||||||| ||| |||||||||| |||||| | ||||| ||||||
Sbjct: 1377 gagatcaccacgttccgctaccgggtcttgcacgtcgcggcccgcatcacccgcggagcc 1436
Query: 22375 cggcaggtccggttgcggatcgacaagacctggcgctgggc 22415
||||| |||||| || | |||||| |||||||||||||||
Sbjct: 1437 cggcaagtccggctgtgtatcgacgcgacctggcgctgggc 1477
Score = 71.9 bits (36), Expect = 4e-11
Identities = 112/136 (82%), Gaps = 1/136 (0%)
Strand = Plus / Plus
Query: 21936 tgggtggccgaggccaccggcatgatcgacctgtcctcgtggccggaggggtcccggttg 21995
||||| ||||| |||||||| || || |||||||| ||||||||| || | |||||
Sbjct: 999 tgggtcgccgaagccaccgggctggtcaacctgtccgcgtggccggccggcacgaggttg 1058
Query: 21996 atcctgcgcaagggaacggccacaccccggcgcgcagctgacgttcaccgacgtcgacgg 22055
||||||||||||| |||| || || |||||||||||| || ||||||||||| ||||||
Sbjct: 1059 atcctgcgcaagg-aacgcccgcatcccggcgcgcagttgcggttcaccgacgccgacgg 1117
Query: 22056 gcaccgggtcaccgcg 22071
| ||||||||||||
Sbjct: 1118 gatgcgggtcaccgcg 1133
Score = 63.9 bits (32), Expect = 1e-08
Identities = 74/88 (84%)
Strand = Plus / Plus
Query: 21589 gaccgtccggagatcgccggcggggaggcgctggccgggctgctgcgggccgggaacgcc 21648
||||| || ||||||||||| ||||| ||||||||||||||||||| |||| |||
Sbjct: 642 gaccgacccgagatcgccggtggggaagcgctggccgggctgctgcacaccggccgtgcc 701
Query: 21649 ggcagcaacaccgccgccgaccacatca 21676
|| |||||||||||||||||||||||
Sbjct: 702 ggttccaacaccgccgccgaccacatca 729
Score = 40.1 bits (20), Expect = 0.15
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 22129 cggcaccggcaacacgcccgggtcgaggaccg 22160
|||||||| || |||||||| |||||||||||
Sbjct: 1191 cggcaccgtcagcacgcccgcgtcgaggaccg 1222
Score = 34.2 bits (17), Expect = 9.5
Identities = 44/53 (83%)
Strand = Plus / Plus
Query: 21771 acccacgcgttcgcgtccgcgtgccgcgaccgcggcgtcgggttctccttcgg 21823
|||||||||||||| ||||||||||| | ||| || |||||||| |||||
Sbjct: 843 acccacgcgttcgccgacgcgtgccgcgccgccggggtggggttctctttcgg 895
>ISMsm3
Length = 1695
Score = 93.7 bits (47), Expect = 1e-17
Identities = 89/103 (86%)
Strand = Plus / Plus
Query: 22314 cgagatcgccacgttccgctaccgcgtcctgcacgtcgccgcccgcgtgacccggggagc 22373
||||||||||||||||||||||||||| ||||||||||| |||||| | ||||| || ||
Sbjct: 1377 cgagatcgccacgttccgctaccgcgtgctgcacgtcgcagcccgcatcacccgcggcgc 1436
Query: 22374 ccggcaggtccggttgcggatcgacaagacctggcgctgggca 22416
||| || ||||| |||| |||||| |||||||||||||||
Sbjct: 1437 ccgccaactccggctgcgcatcgacgccacctggcgctgggca 1479
Score = 89.7 bits (45), Expect = 2e-16
Identities = 87/101 (86%)
Strand = Plus / Plus
Query: 21583 ttcctggaccgtccggagatcgccggcggggaggcgctggccgggctgctgcgggccggg 21642
||||||||||| || ||||||||||||||||| || ||||||||||||||||| |||
Sbjct: 637 ttcctggaccgccccgagatcgccggcggggaagccctggccgggctgctgcgcagcggc 696
Query: 21643 aacgccggcagcaacaccgccgccgaccacatcagcgtcct 21683
||||| ||| |||||||||| ||||||||||| ||||||
Sbjct: 697 aacgcgggctccaacaccgccagcgaccacatcatcgtcct 737
Score = 46.1 bits (23), Expect = 0.002
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 21252 ggtgttcaccgatctcgcggtcgcggtcgccgacggcgcggac 21294
||||||| ||||||| || | |||||||||||||||||||||
Sbjct: 297 ggtgttcgccgatctggccgcggcggtcgccgacggcgcggac 339
Score = 44.1 bits (22), Expect = 0.010
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 22127 tgcggcaccggcaacacgcccgggtcgaggaccg 22160
|||||||||| || |||||||| |||||||||||
Sbjct: 1190 tgcggcaccgccagcacgcccgcgtcgaggaccg 1223
Score = 40.1 bits (20), Expect = 0.15
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 21930 ggcgcctgggtggccgaggccacc 21953
||||||||||| ||||||||||||
Sbjct: 994 ggcgcctgggtcgccgaggccacc 1017
Score = 38.2 bits (19), Expect = 0.61
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 21002 gaaagtgcctgtcctgtaaggga 21024
|||||||||||||||| ||||||
Sbjct: 47 gaaagtgcctgtcctgcaaggga 69
Score = 38.2 bits (19), Expect = 0.61
Identities = 43/51 (84%)
Strand = Plus / Plus
Query: 22219 aacgctgcctggctcgaggtcgtgttgaccgcgaccgacctgatcgcctgg 22269
||||| |||||||||||| |||| || |||| ||||||||| || |||||
Sbjct: 1282 aacgccgcctggctcgagatcgtcctggccgccaccgacctggtcacctgg 1332
>ISMyma2
Length = 1679
Score = 65.9 bits (33), Expect = 3e-09
Identities = 84/101 (83%)
Strand = Plus / Plus
Query: 21586 ctggaccgtccggagatcgccggcggggaggcgctggccgggctgctgcgggccgggaac 21645
|||||||| |||||||||||||| || |||||| ||||||||||||| || || |||
Sbjct: 639 ctggaccgcccggagatcgccggtggtgaggcgttggccgggctgctacgcaaaggcaac 698
Query: 21646 gccggcagcaacaccgccgccgaccacatcagcgtcctcga 21686
||||| |||||||||||| |||||| ||| ||||||||
Sbjct: 699 gccggttccaacaccgccgctgaccacgtcacggtcctcga 739
Score = 61.9 bits (31), Expect = 4e-08
Identities = 46/51 (90%)
Strand = Plus / Plus
Query: 22309 cgctgcgagatcgccacgttccgctaccgcgtcctgcacgtcgccgcccgc 22359
||||| ||||||||| ||||||||||||| || ||||||| ||||||||||
Sbjct: 1362 cgctgtgagatcgcctcgttccgctaccgggtgctgcacgccgccgcccgc 1412
Score = 48.1 bits (24), Expect = 6e-04
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 21792 tgccgcgaccgcggcgtcgggttctccttcgggttccctgtcga 21835
||||| || ||||| |||||||||||||||||||| || |||||
Sbjct: 855 tgccgtgatcgcggggtcgggttctccttcgggtttcccgtcga 898
Score = 40.1 bits (20), Expect = 0.15
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 21130 gtggtctcacacgccggggtcgggttgttgcgggagatggccga 21173
||||| || ||||||||| | ||| ||||||||||| |||||||
Sbjct: 174 gtggtgtcgcacgccgggatggggctgttgcgggagctggccga 217
Score = 34.2 bits (17), Expect = 9.5
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 20997 aacgtgaaagtgcctgtcctg 21017
|||| ||||||||||||||||
Sbjct: 41 aacgcgaaagtgcctgtcctg 61
Score = 34.2 bits (17), Expect = 9.5
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 21936 tgggtggccgaggccac 21952
|||||||||||||||||
Sbjct: 990 tgggtggccgaggccac 1006
>ISFsp14
Length = 1696
Score = 58.0 bits (29), Expect = 7e-07
Identities = 58/65 (89%), Gaps = 2/65 (3%)
Strand = Plus / Plus
Query: 22008 ggaacggccacaccccggcgcgcagctgacgt-tcaccgacgtcgacgggcaccgggtca 22066
|||||| || |||||||||||||||||| ||| |||||||||||||||| ||||| |||
Sbjct: 1060 ggaacgcccgcaccccggcgcgcagctg-cgtgtcaccgacgtcgacggcaaccggatca 1118
Query: 22067 ccgcg 22071
|||||
Sbjct: 1119 ccgcg 1123
Score = 46.1 bits (23), Expect = 0.002
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 21655 aacaccgccgccgaccacatcagcgtc 21681
|||||||||||||||||||||| ||||
Sbjct: 728 aacaccgccgccgaccacatcaccgtc 754
Score = 34.2 bits (17), Expect = 9.5
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 22258 ctgatcgcctggaccca 22274
|||||||||||||||||
Sbjct: 1298 ctgatcgcctggaccca 1314
>ISNml2
Length = 1689
Score = 52.0 bits (26), Expect = 4e-05
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 21643 aacgccggcagcaacaccgccgccgaccacatcagcgt 21680
||||||||| ||||||||| |||||||||||||||||
Sbjct: 718 aacgccggctccaacaccgcagccgaccacatcagcgt 755
Score = 34.2 bits (17), Expect = 9.5
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 27274 tcgaccttggcgatgatgtcg 27294
|||||||||||| ||||||||
Sbjct: 935 tcgaccttggcggtgatgtcg 915
>ISStr1
Length = 1664
Score = 50.1 bits (25), Expect = 2e-04
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 21654 caacaccgccgccgaccacatcagcgtcctcga 21686
||||||| ||||||||||||||||||| |||||
Sbjct: 720 caacaccaccgccgaccacatcagcgtgctcga 752
>ISFsp15
Length = 1695
Score = 48.1 bits (24), Expect = 6e-04
Identities = 54/64 (84%)
Strand = Plus / Plus
Query: 22008 ggaacggccacaccccggcgcgcagctgacgttcaccgacgtcgacgggcaccgggtcac 22067
|||||| || || ||||||||||||||| | |||| ||||||||||| ||||| ||||
Sbjct: 1060 ggaacgcccgcatcccggcgcgcagctgcggatcactgacgtcgacggcaaccggatcac 1119
Query: 22068 cgcg 22071
||||
Sbjct: 1120 cgcg 1123
Score = 46.1 bits (23), Expect = 0.002
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 21655 aacaccgccgccgaccacatcagcgtc 21681
|||||||||||||||||||||| ||||
Sbjct: 728 aacaccgccgccgaccacatcaccgtc 754
Score = 36.2 bits (18), Expect = 2.4
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 22254 cgacctgatcgcctggac 22271
||||||||||||||||||
Sbjct: 1294 cgacctgatcgcctggac 1311
>IS1081
Length = 1435
Score = 48.1 bits (24), Expect = 6e-04
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 19124 gcctcgaggtcctcacccgagctcgagc 19151
|||||||||||||||||||||| |||||
Sbjct: 1279 gcctcgaggtcctcacccgagcccgagc 1306
Score = 34.2 bits (17), Expect = 9.5
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 18775 gctgcgcgggctgctct 18791
|||||||||||||||||
Sbjct: 197 gctgcgcgggctgctct 213
>ISStsp3
Length = 1925
Score = 44.1 bits (22), Expect = 0.010
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 21510 gatcgcccactcggagaaggagaacgcggctgcgacctggaa 21551
|||||| ||||| || |||||| ||||||| |||||||||||
Sbjct: 612 gatcgcgcactccgacaaggaggacgcggccgcgacctggaa 653
Score = 34.2 bits (17), Expect = 9.5
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 22008 ggaacggccacaccccggcgc 22028
||||||||| |||||||||||
Sbjct: 1092 ggaacggccccaccccggcgc 1112
>ISCur1
Length = 1627
Score = 42.1 bits (21), Expect = 0.039
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 22120 ctcgagctgcggcaccggcaacacgcccgggtcgaggaccggatc 22164
||||||||||| ||||| | || ||||||| |||||||||||||
Sbjct: 1169 ctcgagctgcgccaccgccgacgtgcccgggccgaggaccggatc 1213
Score = 38.2 bits (19), Expect = 0.61
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 21654 caacaccgccgccgaccacatca 21676
|||||||||| ||||||||||||
Sbjct: 730 caacaccgccaccgaccacatca 752
Score = 36.2 bits (18), Expect = 2.4
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 5914 cgacggcgccggtgccaccaag 5935
|||||||||||||| |||||||
Sbjct: 829 cgacggcgccggtggcaccaag 850
>IS1676
Length = 1693
Score = 42.1 bits (21), Expect = 0.039
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 21654 caacaccgccgccgaccacat 21674
|||||||||||||||||||||
Sbjct: 731 caacaccgccgccgaccacat 751
>ISMgi1
Length = 1614
Score = 40.1 bits (20), Expect = 0.15
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 21664 gccgaccacatcagcgtcct 21683
||||||||||||||||||||
Sbjct: 718 gccgaccacatcagcgtcct 737
>ISMno23
Length = 2271
Score = 38.2 bits (19), Expect = 0.61
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 26365 tggctgcggcctacgcgtc 26383
|||||||||||||||||||
Sbjct: 504 tggctgcggcctacgcgtc 522
>ISThsp9
Length = 6215
Score = 38.2 bits (19), Expect = 0.61
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 1284 agcgcggcgagctgtgccagcgt 1306
||||||||||||||| |||||||
Sbjct: 4532 agcgcggcgagctgttccagcgt 4554
Score = 34.2 bits (17), Expect = 9.5
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 23330 cctcggccatcagcacc 23346
|||||||||||||||||
Sbjct: 3694 cctcggccatcagcacc 3678
Score = 34.2 bits (17), Expect = 9.5
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 5895 gcgaagggcaggaggac 5911
|||||||||||||||||
Sbjct: 4559 gcgaagggcaggaggac 4575
>ISMk1
Length = 947
Score = 38.2 bits (19), Expect = 0.61
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 21655 aacaccgccgccgaccaca 21673
|||||||||||||||||||
Sbjct: 945 aacaccgccgccgaccaca 927
>IS1549
Length = 1640
Score = 38.2 bits (19), Expect = 0.61
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 21895 agaccgacgccggcgacgg 21913
|||||||||||||||||||
Sbjct: 654 agaccgacgccggcgacgg 672
>IS1480b
Length = 848
Score = 38.2 bits (19), Expect = 0.61
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 12389 gtgacgacggcggcggtgaccga 12411
||||||||||||| |||||||||
Sbjct: 496 gtgacgacggcggaggtgaccga 518
>IS1480a
Length = 848
Score = 38.2 bits (19), Expect = 0.61
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 12389 gtgacgacggcggcggtgaccga 12411
||||||||||||| |||||||||
Sbjct: 496 gtgacgacggcggaggtgaccga 518
>IS1162
Length = 2634
Score = 38.2 bits (19), Expect = 0.61
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 6596 tggtagtcgatgttgacct 6614
|||||||||||||||||||
Sbjct: 1259 tggtagtcgatgttgacct 1241
Score = 34.2 bits (17), Expect = 9.5
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 26569 gcggccacggcgccggt 26585
|||||||||||||||||
Sbjct: 2035 gcggccacggcgccggt 2019
>ISBlo17
Length = 1352
Score = 36.2 bits (18), Expect = 2.4
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 11070 gacggcatccacctgcac 11087
||||||||||||||||||
Sbjct: 476 gacggcatccacctgcac 493
>ISPkr1
Length = 2469
Score = 36.2 bits (18), Expect = 2.4
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 6078 gccccggccgaagttcag 6095
||||||||||||||||||
Sbjct: 880 gccccggccgaagttcag 897
>ISRpa9
Length = 1539
Score = 36.2 bits (18), Expect = 2.4
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 24645 ccgggctctggtgctgca 24662
||||||||||||||||||
Sbjct: 1492 ccgggctctggtgctgca 1475
>ISRsp7
Length = 2024
Score = 36.2 bits (18), Expect = 2.4
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 10999 tttccggacatgatctcgccgg 11020
||||||||||||||| ||||||
Sbjct: 115 tttccggacatgatcgcgccgg 94
>ISCARN85
Length = 816
Score = 36.2 bits (18), Expect = 2.4
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 15218 aacttcgtcctgatcgcc 15235
||||||||||||||||||
Sbjct: 771 aacttcgtcctgatcgcc 788
>ISAnsp3
Length = 2518
Score = 36.2 bits (18), Expect = 2.4
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 14125 gcgaagcgatcatcacgg 14142
||||||||||||||||||
Sbjct: 1356 gcgaagcgatcatcacgg 1373
>IS1557
Length = 1509
Score = 36.2 bits (18), Expect = 2.4
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 11594 cctcgccggccaccgccgcacc 11615
||||||||||||||||| ||||
Sbjct: 1421 cctcgccggccaccgccccacc 1442
>ISPme1
Length = 1671
Score = 36.2 bits (18), Expect = 2.4
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 23235 cgcctcgacggccctgcc 23252
||||||||||||||||||
Sbjct: 424 cgcctcgacggccctgcc 407
>ISXc4
Length = 6938
Score = 36.2 bits (18), Expect = 2.4
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 1284 agcgcggcgagctgtgccagcg 1305
||||||||||||||| ||||||
Sbjct: 4537 agcgcggcgagctgttccagcg 4558
>IS1535
Length = 2300
Score = 36.2 bits (18), Expect = 2.4
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 21938 ggtggccgaggccaccgg 21955
||||||||||||||||||
Sbjct: 663 ggtggccgaggccaccgg 680
>ISAeme8
Length = 1739
Score = 34.2 bits (17), Expect = 9.5
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 11785 gtctccacgatgaccgc 11801
|||||||||||||||||
Sbjct: 1338 gtctccacgatgaccgc 1322
>ISRel10
Length = 2528
Score = 34.2 bits (17), Expect = 9.5
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 10175 cgccgaggtcgtcgata 10191
|||||||||||||||||
Sbjct: 1305 cgccgaggtcgtcgata 1321
>ISIde1
Length = 1448
Score = 34.2 bits (17), Expect = 9.5
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 27270 gagctcgaccttggcga 27286
|||||||||||||||||
Sbjct: 170 gagctcgaccttggcga 154
>ISHmu7
Length = 1455
Score = 34.2 bits (17), Expect = 9.5
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 22651 tcgcccgtctgctcgaa 22667
|||||||||||||||||
Sbjct: 1084 tcgcccgtctgctcgaa 1100
>ISRer3
Length = 1471
Score = 34.2 bits (17), Expect = 9.5
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 7481 tcgttcgcgacggtgcc 7497
|||||||||||||||||
Sbjct: 207 tcgttcgcgacggtgcc 223
>ISHvo6
Length = 1047
Score = 34.2 bits (17), Expect = 9.5
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 9747 gtcgcggcgtgccgcga 9763
|||||||||||||||||
Sbjct: 641 gtcgcggcgtgccgcga 657
>ISStsp6
Length = 1476
Score = 34.2 bits (17), Expect = 9.5
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 18011 cagcggctcgaccacaggcgc 18031
|||||||||||||| ||||||
Sbjct: 98 cagcggctcgaccagaggcgc 78
>ISGau1
Length = 1276
Score = 34.2 bits (17), Expect = 9.5
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 6197 aacgccttctcgagcgc 6213
|||||||||||||||||
Sbjct: 283 aacgccttctcgagcgc 267
>ISPso1
Length = 1400
Score = 34.2 bits (17), Expect = 9.5
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 27930 acgccagcacgtcgtcg 27946
|||||||||||||||||
Sbjct: 1089 acgccagcacgtcgtcg 1073
>ISVsp3
Length = 2446
Score = 34.2 bits (17), Expect = 9.5
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 23619 gaagctggacaagggcg 23635
|||||||||||||||||
Sbjct: 851 gaagctggacaagggcg 867
>ISMtsp5
Length = 1347
Score = 34.2 bits (17), Expect = 9.5
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 14871 tcgagcggcacgggttc 14887
|||||||||||||||||
Sbjct: 1237 tcgagcggcacgggttc 1253
>ISMpo6
Length = 1593
Score = 34.2 bits (17), Expect = 9.5
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 17903 caccaccggccaggagg 17919
|||||||||||||||||
Sbjct: 487 caccaccggccaggagg 471
>ISCde1
Length = 2422
Score = 34.2 bits (17), Expect = 9.5
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 11600 cggccaccgccgcaccg 11616
|||||||||||||||||
Sbjct: 1844 cggccaccgccgcaccg 1828
>ISKol11
Length = 1365
Score = 34.2 bits (17), Expect = 9.5
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 18134 aaggacgatctcataca 18150
|||||||||||||||||
Sbjct: 531 aaggacgatctcataca 547
>ISAtu6
Length = 2798
Score = 34.2 bits (17), Expect = 9.5
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 7603 ggcgatgcgctcaccgc 7619
|||||||||||||||||
Sbjct: 2287 ggcgatgcgctcaccgc 2271
>ISRer1
Length = 1687
Score = 34.2 bits (17), Expect = 9.5
Identities = 47/57 (82%)
Strand = Plus / Plus
Query: 21924 cgcgagggcgcctgggtggccgaggccaccggcatgatcgacctgtcctcgtggccg 21980
||||| |||||||||||| | ||| |||||| || |||| ||||| |||||||||
Sbjct: 986 cgcgacggcgcctgggtgacggagttgaccggcctgctcgatctgtcgtcgtggccg 1042
>ISMesp2
Length = 1618
Score = 34.2 bits (17), Expect = 9.5
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 6470 aggtcgggcaggttctc 6486
|||||||||||||||||
Sbjct: 499 aggtcgggcaggttctc 483
Score = 34.2 bits (17), Expect = 9.5
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 7877 agcccgtcaacctccag 7893
|||||||||||||||||
Sbjct: 1497 agcccgtcaacctccag 1513
>ISPlpa1
Length = 1849
Score = 34.2 bits (17), Expect = 9.5
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 11817 gtcgaactcgatctcgtcgac 11837
||||||||||| |||||||||
Sbjct: 1776 gtcgaactcgagctcgtcgac 1796
>ISAar10
Length = 1602
Score = 34.2 bits (17), Expect = 9.5
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 10422 agcgctggcgcagctgc 10438
|||||||||||||||||
Sbjct: 769 agcgctggcgcagctgc 785
>ISAar7
Length = 2983
Score = 34.2 bits (17), Expect = 9.5
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 23003 ggaggtcgttgacggtc 23019
|||||||||||||||||
Sbjct: 1313 ggaggtcgttgacggtc 1329
>ISAde3
Length = 1183
Score = 34.2 bits (17), Expect = 9.5
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 26862 atcagcctcgacgacgc 26878
|||||||||||||||||
Sbjct: 1026 atcagcctcgacgacgc 1042
>ISMdi24
Length = 849
Score = 34.2 bits (17), Expect = 9.5
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 19838 acaccgcggcgggcaatgcgc 19858
|||||||||||||| ||||||
Sbjct: 668 acaccgcggcgggcgatgcgc 648
>ISMex35
Length = 1294
Score = 34.2 bits (17), Expect = 9.5
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 27359 ccgagccgagccggatc 27375
|||||||||||||||||
Sbjct: 1201 ccgagccgagccggatc 1185
>ISMex40
Length = 918
Score = 34.2 bits (17), Expect = 9.5
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 18011 cagcggctcgaccacag 18027
|||||||||||||||||
Sbjct: 185 cagcggctcgaccacag 169
>ISMdi7
Length = 2568
Score = 34.2 bits (17), Expect = 9.5
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 18185 gaggcgatccggctcgg 18201
|||||||||||||||||
Sbjct: 1431 gaggcgatccggctcgg 1447
>ISAzo18
Length = 1471
Score = 34.2 bits (17), Expect = 9.5
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 21268 gcggtcgcggtcgccga 21284
|||||||||||||||||
Sbjct: 287 gcggtcgcggtcgccga 271
>ISThsp8
Length = 1929
Score = 34.2 bits (17), Expect = 9.5
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 21615 ggcgctggccgggctgctgcg 21635
|||| ||||||||||||||||
Sbjct: 671 ggcgttggccgggctgctgcg 691
>ISCARN24
Length = 2778
Score = 34.2 bits (17), Expect = 9.5
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 21712 cgcgccctggtgacccg 21728
|||||||||||||||||
Sbjct: 847 cgcgccctggtgacccg 863
>ISCARN15
Length = 2427
Score = 34.2 bits (17), Expect = 9.5
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 5420 ggcgaccgcgacgaggt 5436
|||||||||||||||||
Sbjct: 1641 ggcgaccgcgacgaggt 1657
>ISBj7_B
Length = 2865
Score = 34.2 bits (17), Expect = 9.5
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 1283 cagcgcggcgagctgtg 1299
|||||||||||||||||
Sbjct: 781 cagcgcggcgagctgtg 765
>ISXau4
Length = 2458
Score = 34.2 bits (17), Expect = 9.5
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 25988 cgtcgaggtgggcgacg 26004
|||||||||||||||||
Sbjct: 1795 cgtcgaggtgggcgacg 1779
>ISGdi4
Length = 1176
Score = 34.2 bits (17), Expect = 9.5
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 2348 tcgaggacggcccgatc 2364
|||||||||||||||||
Sbjct: 392 tcgaggacggcccgatc 408
>ISAli10
Length = 2584
Score = 34.2 bits (17), Expect = 9.5
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 25374 ccccgctcggctgggccggcc 25394
|||||| ||||||||||||||
Sbjct: 1485 ccccgcgcggctgggccggcc 1505
>ISPa31
Length = 1671
Score = 34.2 bits (17), Expect = 9.5
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 22332 ctaccgcgtcctgcacg 22348
|||||||||||||||||
Sbjct: 889 ctaccgcgtcctgcacg 905
>ISRel3
Length = 2308
Score = 34.2 bits (17), Expect = 9.5
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 24942 ttgtcggaacggcgctgctcg 24962
|||||| ||||||||||||||
Sbjct: 2044 ttgtcgcaacggcgctgctcg 2064
>ISRhosp5
Length = 1335
Score = 34.2 bits (17), Expect = 9.5
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 1754 tcgagccctgcggcgcc 1770
|||||||||||||||||
Sbjct: 984 tcgagccctgcggcgcc 968
>ISSme2
Length = 2219
Score = 34.2 bits (17), Expect = 9.5
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 14344 ggaccgtcgcccgcttc 14360
|||||||||||||||||
Sbjct: 470 ggaccgtcgcccgcttc 454
>ISPsy28
Length = 1291
Score = 34.2 bits (17), Expect = 9.5
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 21881 gcacccggcactgcagaccga 21901
||||||||||||||| |||||
Sbjct: 421 gcacccggcactgcacaccga 401
>ISFal1
Length = 1736
Score = 34.2 bits (17), Expect = 9.5
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 14294 cagcttcgaggacgtcctggc 14314
|||| ||||||||||||||||
Sbjct: 1075 cagcgtcgaggacgtcctggc 1095
>ISH18
Length = 1548
Score = 34.2 bits (17), Expect = 9.5
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 25980 ggcgaggtcgtcgaggt 25996
|||||||||||||||||
Sbjct: 347 ggcgaggtcgtcgaggt 331
>ISFsp1
Length = 1732
Score = 34.2 bits (17), Expect = 9.5
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 14680 tgcgcaacgcccgcgag 14696
|||||||||||||||||
Sbjct: 950 tgcgcaacgcccgcgag 966
Score = 34.2 bits (17), Expect = 9.5
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 15688 gcgcaacgcccgcgagc 15704
|||||||||||||||||
Sbjct: 951 gcgcaacgcccgcgagc 967
>ISAzsp1
Length = 1309
Score = 34.2 bits (17), Expect = 9.5
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 5022 ggctcgaccccgtagac 5038
|||||||||||||||||
Sbjct: 417 ggctcgaccccgtagac 401
>ISBmu3
Length = 2697
Score = 34.2 bits (17), Expect = 9.5
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 6596 tggtagtcgatgttgac 6612
|||||||||||||||||
Sbjct: 1314 tggtagtcgatgttgac 1298
>ISLxx1
Length = 2205
Score = 34.2 bits (17), Expect = 9.5
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 21905 cggcgacgggcaggacc 21921
|||||||||||||||||
Sbjct: 467 cggcgacgggcaggacc 483
>ISBlo2
Length = 2455
Score = 34.2 bits (17), Expect = 9.5
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 4522 gcacgccgacgtccgcg 4538
|||||||||||||||||
Sbjct: 1606 gcacgccgacgtccgcg 1590
>ISRso7
Length = 1344
Score = 34.2 bits (17), Expect = 9.5
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 2349 cgaggacggcccgatcc 2365
|||||||||||||||||
Sbjct: 302 cgaggacggcccgatcc 318
>ISPpu4
Length = 1663
Score = 34.2 bits (17), Expect = 9.5
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 10390 agcccgcaatcagcatc 10406
|||||||||||||||||
Sbjct: 1512 agcccgcaatcagcatc 1528
>IS117
Length = 2527
Score = 34.2 bits (17), Expect = 9.5
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 7755 gcaggatctcggtgtcggcgt 7775
||||||||||| |||||||||
Sbjct: 911 gcaggatctcgctgtcggcgt 931
>IS1166
Length = 1469
Score = 34.2 bits (17), Expect = 9.5
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 7481 tcgttcgcgacggtgcc 7497
|||||||||||||||||
Sbjct: 207 tcgttcgcgacggtgcc 223
>IS1164
Length = 1430
Score = 34.2 bits (17), Expect = 9.5
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 26222 ccccgaccgcgaccagg 26238
|||||||||||||||||
Sbjct: 698 ccccgaccgcgaccagg 682
Score = 34.2 bits (17), Expect = 9.5
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 5507 ctggccgagcagcacgccgag 5527
|||||||||||||||| ||||
Sbjct: 1238 ctggccgagcagcacgacgag 1258
>IS1131
Length = 2773
Score = 34.2 bits (17), Expect = 9.5
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 7603 ggcgatgcgctcaccgc 7619
|||||||||||||||||
Sbjct: 2265 ggcgatgcgctcaccgc 2249
>IS1110
Length = 1462
Score = 34.2 bits (17), Expect = 9.5
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 2222 gcgcgagtcaccgctgtggcg 2242
||||||| |||||||||||||
Sbjct: 833 gcgcgagacaccgctgtggcg 813
>IS1096
Length = 2259
Score = 34.2 bits (17), Expect = 9.5
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 26058 tgcgggcggtgccggat 26074
|||||||||||||||||
Sbjct: 2044 tgcgggcggtgccggat 2028
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_27_length_28015_cov_109.761_ID_5222
(28,015 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISMav9 | ISNCY | ISDol1 | Mycobacterium avium | 42 | 0.039 |
| TnXo19 | Tn3 | Xanthomonas oryzae | 40 | 0.15 | |
| ISMxa2 | IS3 | IS407 | Myxococcus xanthus | 40 | 0.15 |
| ISCph12 | IS5 | IS5 | Chlorobium phaeobacteroides | 38 | 0.60 |
| ISMch6 | IS110 | Methylobacterium chloromethanicum | 38 | 0.60 | |
| ISStau2 | IS66 | ISBst12 | Stigmatella aurantiaca | 38 | 0.60 |
| ISCku5 | IS66 | ISBst12 | Candidatus Kuenenia stuttgartiensis | 38 | 0.60 |
| ISHne5 | IS110 | Hyphomonas neptunium | 38 | 0.60 | |
| ISRpa7 | ISAs1 | Rhodopseudomonas palustris | 38 | 0.60 | |
| ISAzvi3 | IS110 | IS1111 | Azotobacter vinelandii | 38 | 0.60 |
| IS408 | IS21 | - | Burkholderia cepacia | 38 | 0.60 |
| IS117 | IS110 | - | Streptomyces coelicolor | 38 | 0.60 |
| ISGrh1 | ISNCY | ISDol1 | Gordonia rhizosphera | 36 | 2.4 |
| TnAs3 | Tn3 | Aeromonas salmonicida | 36 | 2.4 | |
| ISNpe23 | IS1595 | ISH4 | Natrinema pellirubrum | 36 | 2.4 |
| ISNpe6 | IS1595 | ISH4 | Natrinema pellirubrum | 36 | 2.4 |
| ISNma3 | IS1595 | ISH4 | Natrialba magadii | 36 | 2.4 |
| ISHvo5 | IS1595 | ISH4 | Haloferax volcanii | 36 | 2.4 |
| ISAnsp14 | IS256 | Anaeromyxobacter sp. | 36 | 2.4 | |
| ISGeob4 | IS5 | ISL2 | Geodermatophilus obscurus | 36 | 2.4 |
| ISMtsp9 | IS110 | Methylobacterium sp. | 36 | 2.4 | |
| ISBmu30 | IS66 | Burkholderia multivorans | 36 | 2.4 | |
| ISNha6 | IS5 | IS5 | Nitrobacter hamburgensis | 36 | 2.4 |
| ISFsp13 | ISAzo13 | Frankia sp. | 36 | 2.4 | |
| ISRop2 | ISAzo13 | Rhodococcus opacus | 36 | 2.4 | |
| ISPa33 | IS1380 | Pseudomonas aeruginosa | 36 | 2.4 | |
| ISApr10 | IS256 | Alpha proteobacterium | 36 | 2.4 | |
| ISCARN54 | IS3 | IS3 | Metagenomic data from CARNOULES | 36 | 2.4 |
| ISGdi17 | IS21 | Gluconacetobacter diazotrophicus | 36 | 2.4 | |
| ISFsp10 | IS66 | ISBst12 | Frankia sp. | 36 | 2.4 |
| ISMsm7 | IS3 | IS3 | Mycobacterium smegmatis | 36 | 2.4 |
| ISGme1 | IS5 | IS5 | Geobacter metallireducens | 36 | 2.4 |
| ISMysp4 | IS481 | Mycobacterium sp. | 36 | 2.4 | |
| ISXac1 | IS4 | IS10 | Xanthomonas axonopodis | 36 | 2.4 |
| ISRm16 | IS4 | IS4Sa | Sinorhizobium meliloti | 36 | 2.4 |
| ISBcen6 | IS3 | IS2 | Burkholderia cenocepacia | 36 | 2.4 |
| ISXc4 | Tn3 | - | Xanthomonas campestris | 36 | 2.4 |
| ISXaca1 | IS4 | IS10 | Xanthomonas campestris | 36 | 2.4 |
| ISR1 | IS3 | IS407 | Rhizobium lupini | 36 | 2.4 |
| ISH50 | IS1595 | ISH4 | Halobacterium salinarum | 36 | 2.4 |
| ISH4 | IS1595 | ISH4 | Halobacterium sp. | 36 | 2.4 |
| IS66 | IS66 | Agrobacterium tumefaciens | 36 | 2.4 | |
| ISSna1 | ISNCY | ISDol1 | Streptomyces natalensis | 34 | 9.4 |
| ISAeme15 | IS4 | IS4 | Aeromonas media | 34 | 9.4 |
| ISHko4 | IS200/IS605 | IS1341 | Halorubrum kocurii | 34 | 9.4 |
| ISMno16 | IS110 | IS1111 | Methylobacterium nodulans | 34 | 9.4 |
| ISMex45 | IS200/IS605 | IS1341 | Methylobacterium extorquens | 34 | 9.4 |
| ISMex44 | IS200/IS605 | IS1341 | Methylobacterium extorquens | 34 | 9.4 |
| ISSoc9 | IS200/IS605 | IS1341 | Synechococcus sp | 34 | 9.4 |
| ISHhu3 | IS200/IS605 | Halobacterium hubeiense | 34 | 9.4 | |
| ISAs25 | IS1634 | Aeromonas salmonicida | 34 | 9.4 | |
| ISAba30 | IS200/IS605 | Acinetobacter baumannii | 34 | 9.4 | |
| ISLho1 | ISLre2 | Lactobacillus hokkaidonensis | 34 | 9.4 | |
| ISKpn27 | IS481 | Klebsiella pneumoniae | 34 | 9.4 | |
| ISHvo11 | IS4 | ISH8 | Haloferax volcanii | 34 | 9.4 |
| ISFsp17 | ISKra4 | ISKra4 | Frankia sp. | 34 | 9.4 |
| ISNha10 | IS256 | Nitrobacter hamburgensis | 34 | 9.4 | |
| ISTni2 | IS481 | Thioalkalivibrio nitratireducens | 34 | 9.4 | |
| ISStma17 | IS3 | IS51 | Stenotrophomonas maltophilia | 34 | 9.4 |
| ISBsu2 | IS256 | Bacillus subtilis | 34 | 9.4 | |
| ISPa40 | Tn3 | Pseudomonas aeruginosa | 34 | 9.4 | |
| ISPa38 | Tn3 | Pseudomonas aeruginosa | 34 | 9.4 | |
| ISAzs17 | Tn3 | Azospirillum sp. | 34 | 9.4 | |
| ISAzs10 | IS5 | Azospirillum sp. | 34 | 9.4 | |
| ISGeob7 | IS5 | IS427 | Geodermatophilus obscurus | 34 | 9.4 |
| ISRel19 | IS66 | Rhizobium etli | 34 | 9.4 | |
| ISSgr2 | IS5 | ISL2 | Streptomyces griseus | 34 | 9.4 |
| ISSro1 | IS5 | ISL2 | Streptomyces roseosporus | 34 | 9.4 |
| ISGeob1 | IS5 | ISL2 | Geodermatophilus obscurus | 34 | 9.4 |
| ISAcfe1 | IS1182 | Acidimicrobium ferrooxidans | 34 | 9.4 | |
| ISMno31 | IS3 | IS150 | Methylobacterium nodulans | 34 | 9.4 |
| ISMpo9 | IS701 | Methylobacterium populi | 34 | 9.4 | |
| ISMtsp13 | IS256 | Methylobacterium sp. | 34 | 9.4 | |
| ISMno13 | IS66 | Methylobacterium nodulans | 34 | 9.4 | |
| ISPfr7 | ISL3 | Propionibacterium freudenreichii | 34 | 9.4 | |
| ISArsp6 | Tn3 | Arthrobacter sp. | 34 | 9.4 | |
| ISAau5 | ISNCY | Arthrobacter aurescens | 34 | 9.4 | |
| ISMgi1 | IS1380 | Mycobacterium gilvum | 34 | 9.4 | |
| ISAar17 | IS110 | Arthrobacter arilaitensis | 34 | 9.4 | |
| ISApr11 | IS1380 | Alpha proteobacterium | 34 | 9.4 | |
| ISPosp7 | IS1380 | Polaromonas sp. | 34 | 9.4 | |
| ISAzo2 | IS1182 | Azoarcus sp. | 34 | 9.4 | |
| ISAar2 | IS110 | Arthrobacter arilaitensis | 34 | 9.4 | |
| ISMex28 | IS5 | IS5 | Methylobacterium extorquens | 34 | 9.4 |
| ISBps2 | IS3 | IS3 | Burkholderia pseudomallei | 34 | 9.4 |
| ISMex33 | IS3 | IS51 | Methylobacterium extorquens | 34 | 9.4 |
| ISMdi16 | IS3 | IS407 | Methylobacterium dichloromethanicum | 34 | 9.4 |
| ISMdi21 | IS5 | IS1031 | Methylobacterium dichloromethanicum | 34 | 9.4 |
| ISMex9 | IS110 | IS1111 | Methylobacterium extorquens | 34 | 9.4 |
| ISMdi28 | IS701 | Methylobacterium dichloromethanicum | 34 | 9.4 | |
| ISMex38 | Tn3 | Methylobacterium extorquens | 34 | 9.4 | |
| ISMex27 | IS21 | Methylobacterium extorquens | 34 | 9.4 | |
| ISMex14 | IS256 | Methylobacterium extorquens | 34 | 9.4 | |
| ISStma1 | IS481 | Stenotrophomonas maltophilia | 34 | 9.4 | |
| ISStma3 | IS481 | Stenotrophomonas maltophilia | 34 | 9.4 | |
| ISMex1 | IS3 | IS407 | Methylobacterium extorquens | 34 | 9.4 |
| ISAzo37 | IS5 | IS1031 | Azoarcus sp. | 34 | 9.4 |
| ISAzo12 | IS21 | Azoarcus sp. | 34 | 9.4 | |
| ISSav7 | IS481 | Streptomyces avermitilis | 34 | 9.4 | |
| ISRosp4 | IS66 | Roseobacter sp. | 34 | 9.4 | |
| ISAli13 | IS21 | Azospirillum lipoferum | 34 | 9.4 | |
| ISCausp2 | IS1595 | ISNha5 | Caulobacter sp. | 34 | 9.4 |
| ISDsh3 | IS1595 | ISNha5 | Dinoroseobacter shibae | 34 | 9.4 |
| ISMsm5 | IS630 | Mycobacterium smegmatis | 34 | 9.4 | |
| ISRm21 | ISAs1 | Sinorhizobium meliloti | 34 | 9.4 | |
| ISRhosp8 | IS110 | Rhodococcus sp. | 34 | 9.4 | |
| ISRae1 | IS481 | Rhodococcus aetherivorans | 34 | 9.4 | |
| ISDsh2 | IS3 | IS407 | Dinoroseobacter shibae | 34 | 9.4 |
| ISMmg4 | IS701 | Magnetospirillum magneticum | 34 | 9.4 | |
| ISMyma4 | IS481 | - | Mycobacterium marinum | 34 | 9.4 |
| ISAtu2 | IS5 | IS5 | Agrobacterium tumefaciens | 34 | 9.4 |
| IS1663 | IS110 | Bordetella pertussis | 34 | 9.4 | |
| ISFsp1 | ISL3 | Frankia sp. | 34 | 9.4 | |
| ISBcen14 | IS66 | Burkholderia cenocepacia | 34 | 9.4 | |
| ISTfu1 | IS200/IS605 | Thermobifida fusca | 34 | 9.4 | |
| ISAzo4 | IS21 | Azoarcus sp. | 34 | 9.4 | |
| ISRm5 | IS256 | - | Rhizobium meliloti | 34 | 9.4 |
| ISBm2 | IS3 | IS407 | Brucella melitensis | 34 | 9.4 |
| ISBli2 | IS256 | - | Brevibacterium linens | 34 | 9.4 |
| IS987 | IS3 | IS51 | Mycobacterium bovis | 34 | 9.4 |
| IS986 | IS3 | IS51 | Mycobacterium tuberculosis | 34 | 9.4 |
| IS6110 | IS3 | IS51 | Mycobacterium tuberculosis | 34 | 9.4 |
| IS401 | IS3 | IS51 | Burkholderia cepacia | 34 | 9.4 |
| IS1600 | IS21 | - | Ralstonia eutropha | 34 | 9.4 |
| IS1537 | IS607 | Mycobacterium tuberculosis | 34 | 9.4 | |
| IS13869 | ISL3 | - | Brevibacterium lactofermentum | 34 | 9.4 |
| IS1164 | IS256 | - | Rhodococcus rhodochrous | 34 | 9.4 |
| IS1162 | IS21 | - | Pseudomonas fluorescens | 34 | 9.4 |
| IS116 | IS110 | - | Streptomyces clavuligerus | 34 | 9.4 |
>ISMav9
Length = 1572
Score = 42.1 bits (21), Expect = 0.039
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 9162 cggccagggtgcggatcttgacgag 9186
|||||||||||| ||||||||||||
Sbjct: 1485 cggccagggtgctgatcttgacgag 1461
>TnXo19
Length = 18767
Score = 40.1 bits (20), Expect = 0.15
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 11208 ggcgcgcagcgtgtcggcct 11227
||||||||||||||||||||
Sbjct: 10826 ggcgcgcagcgtgtcggcct 10845
Score = 34.2 bits (17), Expect = 9.4
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 1071 gcccacggccgtggccg 1087
|||||||||||||||||
Sbjct: 17257 gcccacggccgtggccg 17241
>ISMxa2
Length = 1244
Score = 40.1 bits (20), Expect = 0.15
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 27715 ccctcgagcacggcatcagc 27734
||||||||||||||||||||
Sbjct: 1175 ccctcgagcacggcatcagc 1194
>ISCph12
Length = 1635
Score = 38.2 bits (19), Expect = 0.60
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 16566 tctcggtgcgctgcaggag 16584
|||||||||||||||||||
Sbjct: 482 tctcggtgcgctgcaggag 500
>ISMch6
Length = 1379
Score = 38.2 bits (19), Expect = 0.60
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 23669 caggagcagctgcgcggcg 23687
|||||||||||||||||||
Sbjct: 1033 caggagcagctgcgcggcg 1015
>ISStau2
Length = 1585
Score = 38.2 bits (19), Expect = 0.60
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 11504 gcaccttgcgcttggtgagccgg 11526
||||||||||||||| |||||||
Sbjct: 667 gcaccttgcgcttggagagccgg 645
>ISCku5
Length = 1900
Score = 38.2 bits (19), Expect = 0.60
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 9003 ggctgtcaccggcggtgag 9021
|||||||||||||||||||
Sbjct: 341 ggctgtcaccggcggtgag 359
>ISHne5
Length = 1182
Score = 38.2 bits (19), Expect = 0.60
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 22855 ctcggctgggtcgcgggcc 22873
|||||||||||||||||||
Sbjct: 334 ctcggctgggtcgcgggcc 352
>ISRpa7
Length = 1196
Score = 38.2 bits (19), Expect = 0.60
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 6060 ctgcagggcgccggcgctc 6078
|||||||||||||||||||
Sbjct: 558 ctgcagggcgccggcgctc 540
>ISAzvi3
Length = 1424
Score = 38.2 bits (19), Expect = 0.60
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 16808 cggccgacgccccggccatctgg 16830
|||||||||||| ||||||||||
Sbjct: 406 cggccgacgcccaggccatctgg 428
>IS408
Length = 2798
Score = 38.2 bits (19), Expect = 0.60
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 19499 cgagctgctcgtgcccgac 19517
|||||||||||||||||||
Sbjct: 897 cgagctgctcgtgcccgac 915
>IS117
Length = 2527
Score = 38.2 bits (19), Expect = 0.60
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 7936 tcatccgcgagcagctcgacggc 7958
|||||||||||||| ||||||||
Sbjct: 427 tcatccgcgagcagatcgacggc 449
>ISGrh1
Length = 1673
Score = 36.2 bits (18), Expect = 2.4
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 9162 cggccagggtgcggatcttgac 9183
|||||||||||| |||||||||
Sbjct: 1538 cggccagggtgctgatcttgac 1517
>TnAs3
Length = 18735
Score = 36.2 bits (18), Expect = 2.4
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 23189 gtcgtcggcggcgaagcg 23206
||||||||||||||||||
Sbjct: 4478 gtcgtcggcggcgaagcg 4461
Score = 34.2 bits (17), Expect = 9.4
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 17018 acgcgctcgccgccgtc 17034
|||||||||||||||||
Sbjct: 2374 acgcgctcgccgccgtc 2358
>ISNpe23
Length = 1001
Score = 36.2 bits (18), Expect = 2.4
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 15778 cgtcaccgtggacgacgt 15795
||||||||||||||||||
Sbjct: 778 cgtcaccgtggacgacgt 761
>ISNpe6
Length = 1004
Score = 36.2 bits (18), Expect = 2.4
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 15778 cgtcaccgtggacgacgt 15795
||||||||||||||||||
Sbjct: 779 cgtcaccgtggacgacgt 762
>ISNma3
Length = 1001
Score = 36.2 bits (18), Expect = 2.4
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 15778 cgtcaccgtggacgacgt 15795
||||||||||||||||||
Sbjct: 778 cgtcaccgtggacgacgt 761
>ISHvo5
Length = 1001
Score = 36.2 bits (18), Expect = 2.4
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 15778 cgtcaccgtggacgacgt 15795
||||||||||||||||||
Sbjct: 778 cgtcaccgtggacgacgt 761
>ISAnsp14
Length = 1629
Score = 36.2 bits (18), Expect = 2.4
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 18978 gcgggtcgaggcgctcgc 18995
||||||||||||||||||
Sbjct: 927 gcgggtcgaggcgctcgc 944
>ISGeob4
Length = 982
Score = 36.2 bits (18), Expect = 2.4
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 14554 ctcggagacgacgaccgg 14571
||||||||||||||||||
Sbjct: 610 ctcggagacgacgaccgg 593
Score = 34.2 bits (17), Expect = 9.4
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 7964 cggcgaggacgtcgaggccct 7984
||||||||||||||| |||||
Sbjct: 395 cggcgaggacgtcgatgccct 375
>ISMtsp9
Length = 1456
Score = 36.2 bits (18), Expect = 2.4
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 24304 ggcatggcggccgggatg 24321
||||||||||||||||||
Sbjct: 934 ggcatggcggccgggatg 917
>ISBmu30
Length = 2344
Score = 36.2 bits (18), Expect = 2.4
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 7959 cgcatcggcgaggacgtc 7976
||||||||||||||||||
Sbjct: 936 cgcatcggcgaggacgtc 953
>ISNha6
Length = 1547
Score = 36.2 bits (18), Expect = 2.4
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 2839 cgaacgtcgtcgcaggtc 2856
||||||||||||||||||
Sbjct: 1312 cgaacgtcgtcgcaggtc 1295
>ISFsp13
Length = 1724
Score = 36.2 bits (18), Expect = 2.4
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 21752 tcgccccggcgccacccc 21769
||||||||||||||||||
Sbjct: 1253 tcgccccggcgccacccc 1270
>ISRop2
Length = 2171
Score = 36.2 bits (18), Expect = 2.4
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 22397 ccgccgccgccctcctcg 22414
||||||||||||||||||
Sbjct: 2093 ccgccgccgccctcctcg 2110
>ISPa33
Length = 1561
Score = 36.2 bits (18), Expect = 2.4
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 3572 cgccgcctcgtcgaggcc 3589
||||||||||||||||||
Sbjct: 132 cgccgcctcgtcgaggcc 149
>ISApr10
Length = 1366
Score = 36.2 bits (18), Expect = 2.4
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 10601 cggtgaggatctcgtcga 10618
||||||||||||||||||
Sbjct: 1026 cggtgaggatctcgtcga 1009
>ISCARN54
Length = 1624
Score = 36.2 bits (18), Expect = 2.4
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 18080 cgctgctccagcacggcg 18097
||||||||||||||||||
Sbjct: 350 cgctgctccagcacggcg 333
>ISGdi17
Length = 2482
Score = 36.2 bits (18), Expect = 2.4
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 1805 ggcgttgacgaggtcgac 1822
||||||||||||||||||
Sbjct: 2060 ggcgttgacgaggtcgac 2043
>ISFsp10
Length = 1713
Score = 36.2 bits (18), Expect = 2.4
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 3682 cgaccggcgcggcggcga 3699
||||||||||||||||||
Sbjct: 851 cgaccggcgcggcggcga 834
>ISMsm7
Length = 1280
Score = 36.2 bits (18), Expect = 2.4
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 18913 gccgacgtcatcgccgaggccc 18934
|||||||||||||||| |||||
Sbjct: 104 gccgacgtcatcgccgtggccc 125
>ISGme1
Length = 1341
Score = 36.2 bits (18), Expect = 2.4
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 10224 ctcgatgagggtgccgtc 10241
||||||||||||||||||
Sbjct: 548 ctcgatgagggtgccgtc 531
>ISMysp4
Length = 1090
Score = 36.2 bits (18), Expect = 2.4
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 15596 tgggcctacgtccggctc 15613
||||||||||||||||||
Sbjct: 943 tgggcctacgtccggctc 960
Score = 34.2 bits (17), Expect = 9.4
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 9159 catcggccagggtgcgg 9175
|||||||||||||||||
Sbjct: 940 catcggccagggtgcgg 924
>ISXac1
Length = 1350
Score = 36.2 bits (18), Expect = 2.4
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 5451 ctgcgtgtcggccgccag 5468
||||||||||||||||||
Sbjct: 1212 ctgcgtgtcggccgccag 1229
>ISRm16
Length = 1299
Score = 36.2 bits (18), Expect = 2.4
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 15672 tcgccgcccgcctcgccc 15689
||||||||||||||||||
Sbjct: 1107 tcgccgcccgcctcgccc 1124
>ISBcen6
Length = 1335
Score = 36.2 bits (18), Expect = 2.4
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 9082 gatctcctcgaccgccgccgcg 9103
||||||||||||||| ||||||
Sbjct: 584 gatctcctcgaccgcggccgcg 563
>ISXc4
Length = 6938
Score = 36.2 bits (18), Expect = 2.4
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 5451 ctgcgtgtcggccgccag 5468
||||||||||||||||||
Sbjct: 6187 ctgcgtgtcggccgccag 6204
>ISXaca1
Length = 1350
Score = 36.2 bits (18), Expect = 2.4
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 5451 ctgcgtgtcggccgccag 5468
||||||||||||||||||
Sbjct: 1212 ctgcgtgtcggccgccag 1229
>ISR1
Length = 1259
Score = 36.2 bits (18), Expect = 2.4
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 19311 atcgcgacgggcaagccccagc 19332
|||||| |||||||||||||||
Sbjct: 930 atcgcgccgggcaagccccagc 951
>ISH50
Length = 996
Score = 36.2 bits (18), Expect = 2.4
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 15778 cgtcaccgtggacgacgt 15795
||||||||||||||||||
Sbjct: 773 cgtcaccgtggacgacgt 756
>ISH4
Length = 1004
Score = 36.2 bits (18), Expect = 2.4
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 15778 cgtcaccgtggacgacgt 15795
||||||||||||||||||
Sbjct: 779 cgtcaccgtggacgacgt 762
>IS66
Length = 2556
Score = 36.2 bits (18), Expect = 2.4
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 8712 ccaccgcctcggccgcgg 8729
||||||||||||||||||
Sbjct: 637 ccaccgcctcggccgcgg 620
>ISSna1
Length = 1560
Score = 34.2 bits (17), Expect = 9.4
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 23056 cctcggccaccagggcg 23072
|||||||||||||||||
Sbjct: 1060 cctcggccaccagggcg 1044
>ISAeme15
Length = 1429
Score = 34.2 bits (17), Expect = 9.4
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 14107 gatgggctacggcggcc 14123
|||||||||||||||||
Sbjct: 1187 gatgggctacggcggcc 1171
>ISHko4
Length = 1517
Score = 34.2 bits (17), Expect = 9.4
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 18474 cctcaccgacgacgccgacat 18494
|||| ||||||||||||||||
Sbjct: 699 cctccccgacgacgccgacat 719
>ISMno16
Length = 1404
Score = 34.2 bits (17), Expect = 9.4
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 21042 ggccggcgcgatggcgg 21058
|||||||||||||||||
Sbjct: 914 ggccggcgcgatggcgg 930
>ISMex45
Length = 1270
Score = 34.2 bits (17), Expect = 9.4
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 26037 cgtcggcgacggcctgc 26053
|||||||||||||||||
Sbjct: 447 cgtcggcgacggcctgc 463
>ISMex44
Length = 1270
Score = 34.2 bits (17), Expect = 9.4
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 26037 cgtcggcgacggcctgc 26053
|||||||||||||||||
Sbjct: 447 cgtcggcgacggcctgc 463
>ISSoc9
Length = 1514
Score = 34.2 bits (17), Expect = 9.4
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 24162 gccgttcctgctggccg 24178
|||||||||||||||||
Sbjct: 192 gccgttcctgctggccg 176
>ISHhu3
Length = 1686
Score = 34.2 bits (17), Expect = 9.4
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 23919 cgcgccacctccgtgac 23935
|||||||||||||||||
Sbjct: 383 cgcgccacctccgtgac 399
>ISAs25
Length = 1722
Score = 34.2 bits (17), Expect = 9.4
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 19324 agccccagccgctcgac 19340
|||||||||||||||||
Sbjct: 454 agccccagccgctcgac 438
>ISAba30
Length = 1770
Score = 34.2 bits (17), Expect = 9.4
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 24162 gccgttcctgctggccg 24178
|||||||||||||||||
Sbjct: 564 gccgttcctgctggccg 548
>ISLho1
Length = 1547
Score = 34.2 bits (17), Expect = 9.4
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 25999 ttcttcctcgacggcaacgat 26019
|||||||||||| ||||||||
Sbjct: 590 ttcttcctcgacagcaacgat 570
>ISKpn27
Length = 1080
Score = 34.2 bits (17), Expect = 9.4
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 10524 cgccagcaggtcgtccg 10540
|||||||||||||||||
Sbjct: 365 cgccagcaggtcgtccg 349
>ISHvo11
Length = 1445
Score = 34.2 bits (17), Expect = 9.4
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 4891 gcgagagggcgaagccg 4907
|||||||||||||||||
Sbjct: 1192 gcgagagggcgaagccg 1208
>ISFsp17
Length = 1693
Score = 34.2 bits (17), Expect = 9.4
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 16587 cgccgccggcttcgacg 16603
|||||||||||||||||
Sbjct: 1039 cgccgccggcttcgacg 1055
>ISNha10
Length = 1428
Score = 34.2 bits (17), Expect = 9.4
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 16380 cggcccgcaggccgccg 16396
|||||||||||||||||
Sbjct: 257 cggcccgcaggccgccg 241
>ISTni2
Length = 3451
Score = 34.2 bits (17), Expect = 9.4
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 21557 ggcgtcaggcccatgaagtgg 21577
||||||||| |||||||||||
Sbjct: 1081 ggcgtcagggccatgaagtgg 1061
>ISStma17
Length = 1321
Score = 34.2 bits (17), Expect = 9.4
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 1700 gccgaggtcggcatcgagccg 1720
||||||| |||||||||||||
Sbjct: 1010 gccgaggccggcatcgagccg 1030
>ISBsu2
Length = 1369
Score = 34.2 bits (17), Expect = 9.4
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 10854 ccccgtgatcgtgatgg 10870
|||||||||||||||||
Sbjct: 370 ccccgtgatcgtgatgg 386
>ISPa40
Length = 6592
Score = 34.2 bits (17), Expect = 9.4
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 3445 gctgaccaagcgcggcg 3461
|||||||||||||||||
Sbjct: 3265 gctgaccaagcgcggcg 3281
>ISPa38
Length = 6455
Score = 34.2 bits (17), Expect = 9.4
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 4209 tctggaagctcgaccgg 4225
|||||||||||||||||
Sbjct: 413 tctggaagctcgaccgg 397
Score = 34.2 bits (17), Expect = 9.4
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 1798 gctgctcggcgttgacg 1814
|||||||||||||||||
Sbjct: 3097 gctgctcggcgttgacg 3081
>ISAzs17
Length = 7252
Score = 34.2 bits (17), Expect = 9.4
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 27529 cggacggctggctgccg 27545
|||||||||||||||||
Sbjct: 3514 cggacggctggctgccg 3530
>ISAzs10
Length = 1307
Score = 34.2 bits (17), Expect = 9.4
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 9663 gggccagcgtgaagagc 9679
|||||||||||||||||
Sbjct: 539 gggccagcgtgaagagc 555
>ISGeob7
Length = 883
Score = 34.2 bits (17), Expect = 9.4
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 8084 gcccacgtcgctggtcg 8100
|||||||||||||||||
Sbjct: 236 gcccacgtcgctggtcg 252
>ISRel19
Length = 2798
Score = 34.2 bits (17), Expect = 9.4
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 1082 tggccgaggcgatgcga 1098
|||||||||||||||||
Sbjct: 2115 tggccgaggcgatgcga 2131
>ISSgr2
Length = 873
Score = 34.2 bits (17), Expect = 9.4
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 14687 cccgggggcctcgtccg 14703
|||||||||||||||||
Sbjct: 66 cccgggggcctcgtccg 50
>ISSro1
Length = 897
Score = 34.2 bits (17), Expect = 9.4
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 14373 accgccaggcggtggcc 14389
|||||||||||||||||
Sbjct: 337 accgccaggcggtggcc 321
>ISGeob1
Length = 1020
Score = 34.2 bits (17), Expect = 9.4
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 23378 gtccagccgcaccgagg 23394
|||||||||||||||||
Sbjct: 108 gtccagccgcaccgagg 124
>ISAcfe1
Length = 1772
Score = 34.2 bits (17), Expect = 9.4
Identities = 23/25 (92%)
Strand = Plus / Minus
Query: 10282 gcgaggttctcggcctcgtcgaggt 10306
||||| |||||||||||| ||||||
Sbjct: 770 gcgagcttctcggcctcggcgaggt 746
>ISMno31
Length = 1510
Score = 34.2 bits (17), Expect = 9.4
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 12245 gcccgaggaggtccgcg 12261
|||||||||||||||||
Sbjct: 650 gcccgaggaggtccgcg 666
>ISMpo9
Length = 1413
Score = 34.2 bits (17), Expect = 9.4
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 1447 ctggctggtgggcgagt 1463
|||||||||||||||||
Sbjct: 978 ctggctggtgggcgagt 994
Score = 34.2 bits (17), Expect = 9.4
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 17025 cgccgccgtctccgagc 17041
|||||||||||||||||
Sbjct: 1275 cgccgccgtctccgagc 1291
>ISMtsp13
Length = 1428
Score = 34.2 bits (17), Expect = 9.4
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 27734 cgccttcatcgccaccg 27750
|||||||||||||||||
Sbjct: 965 cgccttcatcgccaccg 981
>ISMno13
Length = 2459
Score = 34.2 bits (17), Expect = 9.4
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 20390 tcggcgaggtcgtgtccgagc 20410
||||||||| |||||||||||
Sbjct: 1287 tcggcgaggacgtgtccgagc 1307
>ISPfr7
Length = 1423
Score = 34.2 bits (17), Expect = 9.4
Identities = 26/29 (89%)
Strand = Plus / Plus
Query: 14170 ccccggccgcctcgtcggcgtgagcgtcg 14198
|||||||||||||| ||||||| |||||
Sbjct: 571 ccccggccgcctcgatggcgtgaccgtcg 599
Score = 34.2 bits (17), Expect = 9.4
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 12019 atcgcgacgatcttcac 12035
|||||||||||||||||
Sbjct: 801 atcgcgacgatcttcac 785
>ISArsp6
Length = 26712
Score = 34.2 bits (17), Expect = 9.4
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 24448 ctggcggtcatcgccgg 24464
|||||||||||||||||
Sbjct: 3205 ctggcggtcatcgccgg 3189
>ISAau5
Length = 3989
Score = 34.2 bits (17), Expect = 9.4
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 15771 agtccggcgtcaccgtg 15787
|||||||||||||||||
Sbjct: 1856 agtccggcgtcaccgtg 1840
>ISMgi1
Length = 1614
Score = 34.2 bits (17), Expect = 9.4
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 917 tgatgtcgcggtggtcc 933
|||||||||||||||||
Sbjct: 345 tgatgtcgcggtggtcc 361
>ISAar17
Length = 1473
Score = 34.2 bits (17), Expect = 9.4
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 612 cgtcgactgacggtcct 628
|||||||||||||||||
Sbjct: 1376 cgtcgactgacggtcct 1392
>ISApr11
Length = 1667
Score = 34.2 bits (17), Expect = 9.4
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 4221 accgggtcgagcacgtc 4237
|||||||||||||||||
Sbjct: 749 accgggtcgagcacgtc 733
>ISPosp7
Length = 1612
Score = 34.2 bits (17), Expect = 9.4
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 14374 ccgccaggcggtggccc 14390
|||||||||||||||||
Sbjct: 482 ccgccaggcggtggccc 466
>ISAzo2
Length = 1545
Score = 34.2 bits (17), Expect = 9.4
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 17971 gacgtcgtcgagcagct 17987
|||||||||||||||||
Sbjct: 164 gacgtcgtcgagcagct 180
>ISAar2
Length = 1473
Score = 34.2 bits (17), Expect = 9.4
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 18162 ctccggcaagaccttcg 18178
|||||||||||||||||
Sbjct: 1129 ctccggcaagaccttcg 1145
>ISMex28
Length = 1310
Score = 34.2 bits (17), Expect = 9.4
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 3099 cgtgccggtggcgtggg 3115
|||||||||||||||||
Sbjct: 786 cgtgccggtggcgtggg 770
>ISBps2
Length = 1233
Score = 34.2 bits (17), Expect = 9.4
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 22723 atcctcctgctgccgta 22739
|||||||||||||||||
Sbjct: 546 atcctcctgctgccgta 530
>ISMex33
Length = 1318
Score = 34.2 bits (17), Expect = 9.4
Identities = 23/25 (92%)
Strand = Plus / Plus
Query: 26608 atccgctacaccggtcgcctcgccg 26632
||||||||||||| ||||||||||
Sbjct: 992 atccgctacaccgagcgcctcgccg 1016
>ISMdi16
Length = 1271
Score = 34.2 bits (17), Expect = 9.4
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 4971 acttcagccgcttcacc 4987
|||||||||||||||||
Sbjct: 249 acttcagccgcttcacc 233
>ISMdi21
Length = 930
Score = 34.2 bits (17), Expect = 9.4
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 25844 tcaacttcttcccggac 25860
|||||||||||||||||
Sbjct: 21 tcaacttcttcccggac 5
>ISMex9
Length = 1383
Score = 34.2 bits (17), Expect = 9.4
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 8834 acctcgtgctcgatctg 8850
|||||||||||||||||
Sbjct: 588 acctcgtgctcgatctg 604
>ISMdi28
Length = 1410
Score = 34.2 bits (17), Expect = 9.4
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 15745 cctcgacctccggccgctgac 15765
||||||||||| |||||||||
Sbjct: 1195 cctcgacctcctgccgctgac 1215
>ISMex38
Length = 3841
Score = 34.2 bits (17), Expect = 9.4
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 13333 gcacatcggcttctcgg 13349
|||||||||||||||||
Sbjct: 3678 gcacatcggcttctcgg 3694
>ISMex27
Length = 2493
Score = 34.2 bits (17), Expect = 9.4
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 11093 tcggctcctgcaaggcccggc 11113
|||||||| ||||||||||||
Sbjct: 728 tcggctccggcaaggcccggc 748
>ISMex14
Length = 1381
Score = 34.2 bits (17), Expect = 9.4
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 15301 ccaggtcgtccacgcgc 15317
|||||||||||||||||
Sbjct: 473 ccaggtcgtccacgcgc 457
>ISStma1
Length = 1023
Score = 34.2 bits (17), Expect = 9.4
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 10253 ggccctcgtggaggatg 10269
|||||||||||||||||
Sbjct: 159 ggccctcgtggaggatg 143
>ISStma3
Length = 1023
Score = 34.2 bits (17), Expect = 9.4
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 10253 ggccctcgtggaggatg 10269
|||||||||||||||||
Sbjct: 159 ggccctcgtggaggatg 143
>ISMex1
Length = 1200
Score = 34.2 bits (17), Expect = 9.4
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 13522 ggccgaggcgatgctcg 13538
|||||||||||||||||
Sbjct: 272 ggccgaggcgatgctcg 288
>ISAzo37
Length = 843
Score = 34.2 bits (17), Expect = 9.4
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 24381 cgccgtcttcctgcgcg 24397
|||||||||||||||||
Sbjct: 129 cgccgtcttcctgcgcg 113
>ISAzo12
Length = 3075
Score = 34.2 bits (17), Expect = 9.4
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 16692 cgacctggccggcctca 16708
|||||||||||||||||
Sbjct: 702 cgacctggccggcctca 686
>ISSav7
Length = 2992
Score = 34.2 bits (17), Expect = 9.4
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 7945 agcagctcgacggccgc 7961
|||||||||||||||||
Sbjct: 849 agcagctcgacggccgc 865
Score = 34.2 bits (17), Expect = 9.4
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 27719 cgagcacggcatcagcg 27735
|||||||||||||||||
Sbjct: 2673 cgagcacggcatcagcg 2689
>ISRosp4
Length = 2709
Score = 34.2 bits (17), Expect = 9.4
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 22047 tggcgagcttggtgaac 22063
|||||||||||||||||
Sbjct: 2515 tggcgagcttggtgaac 2499
>ISAli13
Length = 2756
Score = 34.2 bits (17), Expect = 9.4
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 5646 ctccaggatgacggcgt 5662
|||||||||||||||||
Sbjct: 2432 ctccaggatgacggcgt 2416
>ISCausp2
Length = 7915
Score = 34.2 bits (17), Expect = 9.4
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 26827 cggatcgcgagcttccggctg 26847
|||||||| ||||||||||||
Sbjct: 5203 cggatcgccagcttccggctg 5183
>ISDsh3
Length = 3472
Score = 34.2 bits (17), Expect = 9.4
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 4131 tcgtcgccctgcgcgag 4147
|||||||||||||||||
Sbjct: 1822 tcgtcgccctgcgcgag 1838
>ISMsm5
Length = 1103
Score = 34.2 bits (17), Expect = 9.4
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 27728 catcagcgccttcatcg 27744
|||||||||||||||||
Sbjct: 992 catcagcgccttcatcg 1008
>ISRm21
Length = 1167
Score = 34.2 bits (17), Expect = 9.4
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 14527 ggacgccgaccacgtcg 14543
|||||||||||||||||
Sbjct: 703 ggacgccgaccacgtcg 719
>ISRhosp8
Length = 1439
Score = 34.2 bits (17), Expect = 9.4
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 11821 gtctcggcggccgtggtgccg 11841
||||||||||||||| |||||
Sbjct: 931 gtctcggcggccgtgctgccg 911
>ISRae1
Length = 1111
Score = 34.2 bits (17), Expect = 9.4
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 7393 gaccgtggcgcggatcg 7409
|||||||||||||||||
Sbjct: 327 gaccgtggcgcggatcg 343
>ISDsh2
Length = 1203
Score = 34.2 bits (17), Expect = 9.4
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 4170 gcgtgcccgctggcggggatc 4190
|||||| ||||||||||||||
Sbjct: 398 gcgtgcgcgctggcggggatc 418
>ISMmg4
Length = 1507
Score = 34.2 bits (17), Expect = 9.4
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 5780 ggacctgctccagcgcg 5796
|||||||||||||||||
Sbjct: 644 ggacctgctccagcgcg 628
>ISMyma4
Length = 1085
Score = 34.2 bits (17), Expect = 9.4
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 1067 gcgcgcccacggccgtggccg 1087
||||||||||||||| |||||
Sbjct: 584 gcgcgcccacggccgcggccg 604
>ISAtu2
Length = 1353
Score = 34.2 bits (17), Expect = 9.4
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 15722 ggcctcgtcgcccacga 15738
|||||||||||||||||
Sbjct: 795 ggcctcgtcgcccacga 779
>IS1663
Length = 1225
Score = 34.2 bits (17), Expect = 9.4
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 15616 gggcgccgaggggctga 15632
|||||||||||||||||
Sbjct: 701 gggcgccgaggggctga 685
>ISFsp1
Length = 1732
Score = 34.2 bits (17), Expect = 9.4
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 2515 gcgacggcctcgacggc 2531
|||||||||||||||||
Sbjct: 878 gcgacggcctcgacggc 862
Score = 34.2 bits (17), Expect = 9.4
Identities = 32/37 (86%)
Strand = Plus / Minus
Query: 15442 cggcggcggtcccggtgtcggcccggtcgccgtggcg 15478
|||||||| ||| ||||| | |||||||||||||||
Sbjct: 1486 cggcggcgatccaggtgttgagccggtcgccgtggcg 1450
>ISBcen14
Length = 2516
Score = 34.2 bits (17), Expect = 9.4
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 14370 tgcaccgccaggcggtg 14386
|||||||||||||||||
Sbjct: 1485 tgcaccgccaggcggtg 1501
>ISTfu1
Length = 1743
Score = 34.2 bits (17), Expect = 9.4
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 1602 tcgttgtggaggacctc 1618
|||||||||||||||||
Sbjct: 1282 tcgttgtggaggacctc 1298
>ISAzo4
Length = 2757
Score = 34.2 bits (17), Expect = 9.4
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 12297 gaggagcagctcaccca 12313
|||||||||||||||||
Sbjct: 1883 gaggagcagctcaccca 1899
>ISRm5
Length = 1340
Score = 34.2 bits (17), Expect = 9.4
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 21192 ggtcaaggcgatcaccg 21208
|||||||||||||||||
Sbjct: 447 ggtcaaggcgatcaccg 463
>ISBm2
Length = 1274
Score = 34.2 bits (17), Expect = 9.4
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 18251 gcaagccgaagatgatc 18267
|||||||||||||||||
Sbjct: 846 gcaagccgaagatgatc 862
>ISBli2
Length = 1467
Score = 34.2 bits (17), Expect = 9.4
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 18341 cctacctcttcgtcgac 18357
|||||||||||||||||
Sbjct: 609 cctacctcttcgtcgac 625
>IS987
Length = 1355
Score = 34.2 bits (17), Expect = 9.4
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 3804 acctcgatgccctcacg 3820
|||||||||||||||||
Sbjct: 646 acctcgatgccctcacg 630
>IS986
Length = 1354
Score = 34.2 bits (17), Expect = 9.4
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 3804 acctcgatgccctcacg 3820
|||||||||||||||||
Sbjct: 645 acctcgatgccctcacg 629
>IS6110
Length = 1354
Score = 34.2 bits (17), Expect = 9.4
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 3804 acctcgatgccctcacg 3820
|||||||||||||||||
Sbjct: 646 acctcgatgccctcacg 630
>IS401
Length = 1316
Score = 34.2 bits (17), Expect = 9.4
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 5488 tcgcgcacctcggggga 5504
|||||||||||||||||
Sbjct: 88 tcgcgcacctcggggga 72
Score = 34.2 bits (17), Expect = 9.4
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 5783 cctgctccagcgcgtcc 5799
|||||||||||||||||
Sbjct: 914 cctgctccagcgcgtcc 898
>IS1600
Length = 2520
Score = 34.2 bits (17), Expect = 9.4
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 2524 tcgacggcttcgtcgaa 2540
|||||||||||||||||
Sbjct: 1040 tcgacggcttcgtcgaa 1056
>IS1537
Length = 1921
Score = 34.2 bits (17), Expect = 9.4
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 17223 cggcacccggctcgacg 17239
|||||||||||||||||
Sbjct: 1245 cggcacccggctcgacg 1261
>IS13869
Length = 1437
Score = 34.2 bits (17), Expect = 9.4
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 19114 gcaagcccgcctggatg 19130
|||||||||||||||||
Sbjct: 1037 gcaagcccgcctggatg 1053
>IS1164
Length = 1430
Score = 34.2 bits (17), Expect = 9.4
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 24094 gccggcctcgtcgcggtgatc 24114
|||||||||||||||| ||||
Sbjct: 836 gccggcctcgtcgcggcgatc 856
>IS1162
Length = 2634
Score = 34.2 bits (17), Expect = 9.4
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 17114 tcgacccggcctccggcgaga 17134
||||||||||| |||||||||
Sbjct: 704 tcgacccggccaccggcgaga 724
>IS116
Length = 1421
Score = 34.2 bits (17), Expect = 9.4
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 10241 ccgcgatgatgcggccc 10257
|||||||||||||||||
Sbjct: 1231 ccgcgatgatgcggccc 1247
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_28_length_27854_cov_104.444_ID_5224
(27,854 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISAnsp4 | IS21 | Anaeromyxobacter sp. | 42 | 0.038 | |
| ISThsp8 | IS1634 | Thiomonas sp. | 40 | 0.15 | |
| ISAzca2 | IS66 | Azorhizobium caulinodans | 40 | 0.15 | |
| ISAtc2 | ISL3 | Acidithiobacillus caldus | 38 | 0.60 | |
| ISMtsp4 | IS30 | Methylobacterium sp. | 38 | 0.60 | |
| ISMdi18 | IS1595 | ISNwi1 | Methylobacterium dichloromethanicum | 38 | 0.60 |
| ISMex31 | IS110 | IS1111 | Methylobacterium extorquens | 38 | 0.60 |
| ISMex13 | IS21 | Methylobacterium extorquens | 38 | 0.60 | |
| ISMex24 | ISL3 | Methylobacterium extorquens | 38 | 0.60 | |
| ISAtc1 | ISL3 | Acidithiobacillus caldus | 38 | 0.60 | |
| ISBcen28 | IS21 | Burkholderia cenocepacia | 38 | 0.60 | |
| ISYen1 | IS110 | IS1111 | Yersinia enterocolitica | 38 | 0.60 |
| IS511 | IS3 | IS407 | Caulobacter crescentus | 38 | 0.60 |
| IS4811 | IS5 | IS1031 | Streptomyces lividans | 38 | 0.60 |
| IS469 | ISL3 | - | Streptomyces coelicolor | 38 | 0.60 |
| ISMno24 | IS91 | Methylobacterium nodulans | 36 | 2.4 | |
| ISMno21 | IS630 | Methylobacterium nodulans | 36 | 2.4 | |
| ISNpe27 | IS200/IS605 | IS1341 | Natrinema pellirubrum | 36 | 2.4 |
| ISNisp4 | IS256 | Nitrobacter sp. | 36 | 2.4 | |
| ISNpe7 | IS1595 | ISH4 | Natrinema pellirubrum | 36 | 2.4 |
| ISAzs17 | Tn3 | Azospirillum sp. | 36 | 2.4 | |
| ISRel19 | IS66 | Rhizobium etli | 36 | 2.4 | |
| ISAcfe2 | IS1182 | Acidimicrobium ferrooxidans | 36 | 2.4 | |
| ISMno33 | IS1182 | Methylobacterium nodulans | 36 | 2.4 | |
| ISMch6 | IS110 | Methylobacterium chloromethanicum | 36 | 2.4 | |
| ISPfr3 | ISL3 | Propionibacterium freudenreichii | 36 | 2.4 | |
| ISAau5 | ISNCY | Arthrobacter aurescens | 36 | 2.4 | |
| ISAtu6 | IS66 | - | Agrobacterium tumefaciens | 36 | 2.4 |
| ISAzba6 | IS630 | Azospirillum brasilense | 36 | 2.4 | |
| ISKrh2 | IS481 | Kocuria rhizophila | 36 | 2.4 | |
| ISBad1 | IS21 | Bifidobacterium adolescentis | 36 | 2.4 | |
| ISDsh3 | IS1595 | ISNha5 | Dinoroseobacter shibae | 36 | 2.4 |
| ISRssp1 | IS3 | IS407 | Roseovarius sp. | 36 | 2.4 |
| ISDra7 | IS4 | ISPepr1 | Deinococcus radiodurans | 36 | 2.4 |
| ISPst5 | IS5 | IS5 | Pseudomonas stutzeri | 36 | 2.4 |
| ISPsy13 | IS3 | IS3 | Pseudomonas syringae | 36 | 2.4 |
| ISRso17 | IS701 | - | Ralstonia solanacearum | 36 | 2.4 |
| ISRru1 | IS3 | IS51 | Rhodococcus ruber | 36 | 2.4 |
| IS1136 | IS200/IS605 | IS1341 | Saccharopolyspora erythraea | 36 | 2.4 |
| IS1131 | IS66 | - | Agrobacterium tumefaciens | 36 | 2.4 |
| TnAs2 | Tn3 | Aeromonas salmonicida | 34 | 9.4 | |
| ISHhu8 | IS200/IS605 | IS1341 | Halobacterium hubeiense | 34 | 9.4 |
| ISLefe1 | IS1380 | Leptospirillum ferrooxidans | 34 | 9.4 | |
| ISAra2 | ISKra4 | ISAzba1 | Agrobacterium radiobacter | 34 | 9.4 |
| ISNpe6 | IS1595 | ISH4 | Natrinema pellirubrum | 34 | 9.4 |
| ISHla9 | ISH3 | Halorubrum lacusprofundi | 34 | 9.4 | |
| ISRso21 | ISL3 | Ralstonia solanacearum | 34 | 9.4 | |
| ISAzs20 | IS66 | Azospirillum sp. | 34 | 9.4 | |
| ISNmo4 | IS5 | IS5 | Nitrococcus mobilis | 34 | 9.4 |
| ISAra1 | IS5 | IS903 | Agrobacterium radiobacter | 34 | 9.4 |
| ISGeob6 | IS5 | IS427 | Geodermatophilus obscurus | 34 | 9.4 |
| ISMau1 | IS5 | ISL2 | Micromonospora aurantiaca | 34 | 9.4 |
| ISSav6 | IS5 | ISL2 | Streptomyces avermitilis | 34 | 9.4 |
| ISSro1 | IS5 | ISL2 | Streptomyces roseosporus | 34 | 9.4 |
| ISRce2 | IS1182 | Rhodospirillum centenum | 34 | 9.4 | |
| ISGau8 | IS30 | Gemmatimonas aurantiaca | 34 | 9.4 | |
| ISPso1 | IS256 | Paracoccus solventivorans | 34 | 9.4 | |
| ISPth1 | IS5 | IS903 | Paracoccus thiocyanatus | 34 | 9.4 |
| ISPaes3 | IS256 | Paracoccus aestuarii | 34 | 9.4 | |
| ISRssp12 | IS1182 | Roseovarius sp. | 34 | 9.4 | |
| ISRjo3 | ISNCY | ISDol1 | Rhodococcus jostii | 34 | 9.4 |
| ISMno37 | IS6 | Methylobacterium nodulans | 34 | 9.4 | |
| ISMra4 | IS3 | IS3 | Methylobacterium radiotolerans | 34 | 9.4 |
| ISMno19 | IS630 | Methylobacterium nodulans | 34 | 9.4 | |
| ISMno14 | IS110 | IS1111 | Methylobacterium nodulans | 34 | 9.4 |
| ISPfr17 | IS481 | Propionibacterium freudenreichii | 34 | 9.4 | |
| ISPfr8 | ISL3 | Propionibacterium freudenreichii | 34 | 9.4 | |
| ISArsp6 | Tn3 | Arthrobacter sp. | 34 | 9.4 | |
| ISRsp8 | ISL3 | Rhizhobium sp. | 34 | 9.4 | |
| ISAar34 | ISL3 | Arthrobacter arilaitensis | 34 | 9.4 | |
| ISAcma50 | IS21 | Acaryochloris marina | 34 | 9.4 | |
| ISAar30 | ISL3 | Arthrobacter arilaitensis | 34 | 9.4 | |
| ISCph8 | IS1380 | Chlorobium phaeobacteroides | 34 | 9.4 | |
| ISPelu1 | IS1380 | Pelodictyon luteolum | 34 | 9.4 | |
| ISApr8 | IS1380 | alpha proteobacterium | 34 | 9.4 | |
| ISDpr5 | IS1380 | Delta proteobacterium | 34 | 9.4 | |
| ISDde1 | IS5 | IS5 | Desulfovibrio desulfuricans | 34 | 9.4 |
| ISAde5 | IS256 | Anaeromyxobacter dehalogenans | 34 | 9.4 | |
| ISAde1 | IS66 | Anaeromyxobacter dehalogenans | 34 | 9.4 | |
| ISMex37 | IS3 | IS150 | Methylobacterium extorquens | 34 | 9.4 |
| ISMdi6 | IS1182 | Methylobacterium dichloromethanicum | 34 | 9.4 | |
| ISMex36 | IS1182 | Methylobacterium extorquens | 34 | 9.4 | |
| ISAcma13 | IS3 | IS150 | Acaryochloris marina | 34 | 9.4 |
| ISCARN49 | IS21 | Metagenomic data from CARNOULES | 34 | 9.4 | |
| ISAzo15 | IS66 | Azoarcus sp. | 34 | 9.4 | |
| ISCARN16 | IS21 | Metagenomic data from CARNOULES | 34 | 9.4 | |
| ISAli20 | Tn3 | Azospirillum lipoferum | 34 | 9.4 | |
| ISBj7_B | IS66 | Bradyrhizobium japonicum | 34 | 9.4 | |
| ISAfe8 | IS200/IS605 | IS1341 | Acidithiobacillus ferrooxidans | 34 | 9.4 |
| ISGdi16 | IS1182 | Gluconacetobacter diazotrophicus | 34 | 9.4 | |
| ISApr6 | IS66 | Alpha proteobacterium | 34 | 9.4 | |
| ISMno3 | IS66 | ISBst12 | Methylobacterium nodulans | 34 | 9.4 |
| ISAli10 | IS66 | Azospirillum lipoferum | 34 | 9.4 | |
| ISAeh1 | IS66 | Alkalilimnicola ehrlichei | 34 | 9.4 | |
| ISFsp10 | IS66 | ISBst12 | Frankia sp. | 34 | 9.4 |
| ISAau4 | Tn3 | Arthrobacter aurescens | 34 | 9.4 | |
| IS1557 | ISL3 | Mycobacterium tuberculosis | 34 | 9.4 | |
| ISMsm6 | IS1634 | Mycobacterium smegmatis | 34 | 9.4 | |
| ISSsp5 | IS21 | Sphingomonas sp. | 34 | 9.4 | |
| ISNmo3 | IS481 | Nitrococcus mobilis | 34 | 9.4 | |
| ISSpwi1 | IS3 | IS407 | Sphingomonas wittichii | 34 | 9.4 |
| ISBcen23 | IS3 | IS407 | Burkholderia cenocepacia | 34 | 9.4 |
| ISXc8 | IS3 | IS3 | Xanthomonas campestris | 34 | 9.4 |
| ISAusp1 | IS1595 | ISNha5 | Aurantimonas sp. | 34 | 9.4 |
| ISSav4 | IS701 | Streptomyces avermitilis | 34 | 9.4 | |
| ISSav2 | IS701 | Streptomyces avermitilis | 34 | 9.4 | |
| ISNha2 | IS701 | Nitrobacter hamburgensis | 34 | 9.4 | |
| ISGvi2 | IS4 | IS50 | Gloeobacter violaceus | 34 | 9.4 |
| ISBcen13 | IS21 | Burkholderia cenocepacia | 34 | 9.4 | |
| ISXax1 | IS256 | Xanthomonas axonopodis | 34 | 9.4 | |
| ISEch3 | IS110 | IS1111 | Erwinia chrysanthemi | 34 | 9.4 |
| ISAzvi3 | IS110 | IS1111 | Azotobacter vinelandii | 34 | 9.4 |
| ISMmg1 | IS110 | IS1111 | Magnetospirillum magnetotacticum | 34 | 9.4 |
| ISBlo11 | IS3 | IS150 | Bifidobacterium longum | 34 | 9.4 |
| ISPpu9 | IS110 | Pseudomonas putida | 34 | 9.4 | |
| ISXc6 | IS5 | IS5 | Xanthomonas campestris | 34 | 9.4 |
| ISPsp2 | ISL3 | - | Pseudomonas sp. | 34 | 9.4 |
| ISPa42 | Tn3 | Pseudomonas aeruginosa | 34 | 9.4 | |
| ISH8E | IS4 | ISH8 | Halobacterium sp. | 34 | 9.4 |
| ISBli2 | IS256 | - | Brevibacterium linens | 34 | 9.4 |
| ISAav1 | IS21 | - | Acidovorax avenae | 34 | 9.4 |
| IS66 | IS66 | Agrobacterium tumefaciens | 34 | 9.4 | |
| IS466 | ISL3 | - | Streptomyces coelicolor | 34 | 9.4 |
| ISPa45 | IS4 | IS4 | Pseudomonas aeruginosa | 34 | 9.4 |
| IS1647 | IS5 | IS427 | Streptomyces coelicolor | 34 | 9.4 |
| IS298 | IS5 | IS427 | Caulobacter crescentus | 34 | 9.4 |
| IS1419 | IS481 | - | Burkholderia glumae | 34 | 9.4 |
| IS1411 | ISL3 | - | Pseudomonas sp | 34 | 9.4 |
| IS1373 | IS5 | ISL2 | Streptomyces lividans | 34 | 9.4 |
| IS1326 | IS21 | - | Pseudomonas aeruginosa | 34 | 9.4 |
| IS1295 | IS256 | - | Rhodococcus sp. | 34 | 9.4 |
| IS1249 | IS256 | IS1249 | Corynebacterium xerosis | 34 | 9.4 |
>ISAnsp4
Length = 2195
Score = 42.1 bits (21), Expect = 0.038
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 12888 tggtcgcggacctgctcgcgg 12908
|||||||||||||||||||||
Sbjct: 355 tggtcgcggacctgctcgcgg 375
>ISThsp8
Length = 1929
Score = 40.1 bits (20), Expect = 0.15
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 4977 gtgccgtcgcggcgctcgcc 4996
||||||||||||||||||||
Sbjct: 1777 gtgccgtcgcggcgctcgcc 1758
>ISAzca2
Length = 2458
Score = 40.1 bits (20), Expect = 0.15
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 21817 accccggcgacgtcgacctc 21836
||||||||||||||||||||
Sbjct: 441 accccggcgacgtcgacctc 422
>ISAtc2
Length = 1304
Score = 38.2 bits (19), Expect = 0.60
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 18741 tcttgtgggtgcggtagcc 18759
|||||||||||||||||||
Sbjct: 1231 tcttgtgggtgcggtagcc 1213
>ISMtsp4
Length = 1455
Score = 38.2 bits (19), Expect = 0.60
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 2974 cggccccggctgcgggcccgcgg 2996
|||||| ||||||||||||||||
Sbjct: 841 cggcccaggctgcgggcccgcgg 819
>ISMdi18
Length = 3479
Score = 38.2 bits (19), Expect = 0.60
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 6183 accggaccctcggcgtcgcctac 6205
||||||||||||||||| |||||
Sbjct: 353 accggaccctcggcgtcacctac 375
>ISMex31
Length = 1091
Score = 38.2 bits (19), Expect = 0.60
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 5415 tcggcatcgcggtcgtcgt 5433
|||||||||||||||||||
Sbjct: 277 tcggcatcgcggtcgtcgt 259
>ISMex13
Length = 2359
Score = 38.2 bits (19), Expect = 0.60
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 19189 ggccttgaccgcctcgacg 19207
|||||||||||||||||||
Sbjct: 1820 ggccttgaccgcctcgacg 1802
>ISMex24
Length = 1677
Score = 38.2 bits (19), Expect = 0.60
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 7721 cgtcgtcgatcatctcgat 7739
|||||||||||||||||||
Sbjct: 125 cgtcgtcgatcatctcgat 143
>ISAtc1
Length = 1302
Score = 38.2 bits (19), Expect = 0.60
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 18741 tcttgtgggtgcggtagcc 18759
|||||||||||||||||||
Sbjct: 1229 tcttgtgggtgcggtagcc 1211
>ISBcen28
Length = 2311
Score = 38.2 bits (19), Expect = 0.60
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 25099 cggcgcgccagggagaagtcctg 25121
|||||||||||| ||||||||||
Sbjct: 888 cggcgcgccaggaagaagtcctg 866
>ISYen1
Length = 1376
Score = 38.2 bits (19), Expect = 0.60
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 8804 gaaggagcgtccacatgaa 8822
|||||||||||||||||||
Sbjct: 67 gaaggagcgtccacatgaa 85
>IS511
Length = 1266
Score = 38.2 bits (19), Expect = 0.60
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 18638 cgccgccgcgccatcggca 18656
|||||||||||||||||||
Sbjct: 619 cgccgccgcgccatcggca 637
>IS4811
Length = 5396
Score = 38.2 bits (19), Expect = 0.60
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 13856 ggacgtcctccggcagcgg 13874
|||||||||||||||||||
Sbjct: 3089 ggacgtcctccggcagcgg 3071
>IS469
Length = 1647
Score = 38.2 bits (19), Expect = 0.60
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 26096 ccgaggcgatccgacgggccctg 26118
||||||||||||| |||||||||
Sbjct: 721 ccgaggcgatccgccgggccctg 743
>ISMno24
Length = 2157
Score = 36.2 bits (18), Expect = 2.4
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 13001 ctcgatgacgacgaggcg 13018
||||||||||||||||||
Sbjct: 93 ctcgatgacgacgaggcg 110
Score = 36.2 bits (18), Expect = 2.4
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 17013 cgccgacgccgcccggatcgac 17034
|||||| |||||||||||||||
Sbjct: 1470 cgccgaggccgcccggatcgac 1449
>ISMno21
Length = 1162
Score = 36.2 bits (18), Expect = 2.4
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 15906 gccgtcgcgccgggcgcg 15923
||||||||||||||||||
Sbjct: 855 gccgtcgcgccgggcgcg 872
>ISNpe27
Length = 1420
Score = 36.2 bits (18), Expect = 2.4
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 296 gcgtcctcgggaacgtcg 313
||||||||||||||||||
Sbjct: 191 gcgtcctcgggaacgtcg 174
>ISNisp4
Length = 1418
Score = 36.2 bits (18), Expect = 2.4
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 12072 gttggcgcaggcggtcga 12089
||||||||||||||||||
Sbjct: 189 gttggcgcaggcggtcga 206
>ISNpe7
Length = 1004
Score = 36.2 bits (18), Expect = 2.4
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 21041 gaagggccgcgaacgcgacggc 21062
|||||||||||| |||||||||
Sbjct: 498 gaagggccgcgagcgcgacggc 519
>ISAzs17
Length = 7252
Score = 36.2 bits (18), Expect = 2.4
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 4197 gaggcgcaggccctggcagccg 4218
||||||||||||||||| ||||
Sbjct: 907 gaggcgcaggccctggccgccg 886
Score = 34.2 bits (17), Expect = 9.4
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 21118 gacgccacgccgagcagcagg 21138
||||||||||| |||||||||
Sbjct: 2131 gacgccacgcccagcagcagg 2151
>ISRel19
Length = 2798
Score = 36.2 bits (18), Expect = 2.4
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 1283 cgaccttgccgatcgagc 1300
||||||||||||||||||
Sbjct: 1404 cgaccttgccgatcgagc 1421
>ISAcfe2
Length = 1771
Score = 36.2 bits (18), Expect = 2.4
Identities = 24/26 (92%)
Strand = Plus / Minus
Query: 19105 gagcagctcgaagtcgagccggttgc 19130
|||||||||||||| ||| |||||||
Sbjct: 1545 gagcagctcgaagtggagtcggttgc 1520
>ISMno33
Length = 1767
Score = 36.2 bits (18), Expect = 2.4
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 3580 agctcgccgccgcccacg 3597
||||||||||||||||||
Sbjct: 1162 agctcgccgccgcccacg 1179
>ISMch6
Length = 1379
Score = 36.2 bits (18), Expect = 2.4
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 6199 cgcctaccgcgacgtcga 6216
||||||||||||||||||
Sbjct: 850 cgcctaccgcgacgtcga 867
>ISPfr3
Length = 1457
Score = 36.2 bits (18), Expect = 2.4
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 20942 cgttgagcaggtgggcgccggt 20963
|||||||||||| |||||||||
Sbjct: 1050 cgttgagcaggtcggcgccggt 1029
>ISAau5
Length = 3989
Score = 36.2 bits (18), Expect = 2.4
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 7260 tctggggcgccatcgctc 7277
||||||||||||||||||
Sbjct: 3685 tctggggcgccatcgctc 3702
>ISAtu6
Length = 2798
Score = 36.2 bits (18), Expect = 2.4
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 1283 cgaccttgccgatcgagc 1300
||||||||||||||||||
Sbjct: 1404 cgaccttgccgatcgagc 1421
>ISAzba6
Length = 1138
Score = 36.2 bits (18), Expect = 2.4
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 12179 tggaggtcggccacggac 12196
||||||||||||||||||
Sbjct: 1010 tggaggtcggccacggac 993
>ISKrh2
Length = 1122
Score = 36.2 bits (18), Expect = 2.4
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 20206 cacggtgcgggtgaagtc 20223
||||||||||||||||||
Sbjct: 869 cacggtgcgggtgaagtc 852
>ISBad1
Length = 2525
Score = 36.2 bits (18), Expect = 2.4
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 9109 ctgcgctccaacgtgacg 9126
||||||||||||||||||
Sbjct: 1279 ctgcgctccaacgtgacg 1262
Score = 34.2 bits (17), Expect = 9.4
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 24194 cttccgtgcggccgtca 24210
|||||||||||||||||
Sbjct: 1475 cttccgtgcggccgtca 1491
>ISDsh3
Length = 3472
Score = 36.2 bits (18), Expect = 2.4
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 14889 ttgtcgacctgctcgcgg 14906
||||||||||||||||||
Sbjct: 1540 ttgtcgacctgctcgcgg 1557
>ISRssp1
Length = 1253
Score = 36.2 bits (18), Expect = 2.4
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 25083 caggaccccgatccggcg 25100
||||||||||||||||||
Sbjct: 534 caggaccccgatccggcg 517
>ISDra7
Length = 1322
Score = 36.2 bits (18), Expect = 2.4
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 21727 acttcggtgcggccaacgacga 21748
|||||||||| |||||||||||
Sbjct: 255 acttcggtgcagccaacgacga 234
>ISPst5
Length = 1191
Score = 36.2 bits (18), Expect = 2.4
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 22397 ggcgatggaggaggcgct 22414
||||||||||||||||||
Sbjct: 287 ggcgatggaggaggcgct 304
>ISPsy13
Length = 1232
Score = 36.2 bits (18), Expect = 2.4
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 27544 agcctcagggcctgctgt 27561
||||||||||||||||||
Sbjct: 900 agcctcagggcctgctgt 917
>ISRso17
Length = 1471
Score = 36.2 bits (18), Expect = 2.4
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 4795 gcgcaaggtgctgcgcca 4812
||||||||||||||||||
Sbjct: 991 gcgcaaggtgctgcgcca 974
>ISRru1
Length = 1345
Score = 36.2 bits (18), Expect = 2.4
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 13373 cgcgaccggctcaaggag 13390
||||||||||||||||||
Sbjct: 110 cgcgaccggctcaaggag 127
>IS1136
Length = 1402
Score = 36.2 bits (18), Expect = 2.4
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 17333 tggccgtggacaccgacg 17350
||||||||||||||||||
Sbjct: 616 tggccgtggacaccgacg 633
>IS1131
Length = 2773
Score = 36.2 bits (18), Expect = 2.4
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 1283 cgaccttgccgatcgagc 1300
||||||||||||||||||
Sbjct: 1401 cgaccttgccgatcgagc 1418
>TnAs2
Length = 8650
Score = 34.2 bits (17), Expect = 9.4
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 19752 cgatggtccggtcgcgg 19768
|||||||||||||||||
Sbjct: 4566 cgatggtccggtcgcgg 4550
Score = 34.2 bits (17), Expect = 9.4
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 20695 ttggcgagcgcgatgcc 20711
|||||||||||||||||
Sbjct: 5485 ttggcgagcgcgatgcc 5469
>ISHhu8
Length = 1420
Score = 34.2 bits (17), Expect = 9.4
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 297 cgtcctcgggaacgtcg 313
|||||||||||||||||
Sbjct: 190 cgtcctcgggaacgtcg 174
>ISLefe1
Length = 1710
Score = 34.2 bits (17), Expect = 9.4
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 4221 gccggagccaccggccg 4237
|||||||||||||||||
Sbjct: 446 gccggagccaccggccg 430
>ISAra2
Length = 2535
Score = 34.2 bits (17), Expect = 9.4
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 24178 cggcgcttccggctgcc 24194
|||||||||||||||||
Sbjct: 848 cggcgcttccggctgcc 832
>ISNpe6
Length = 1004
Score = 34.2 bits (17), Expect = 9.4
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 21042 aagggccgcgaacgcgacggc 21062
||||||||||| |||||||||
Sbjct: 500 aagggccgcgagcgcgacggc 520
>ISHla9
Length = 1436
Score = 34.2 bits (17), Expect = 9.4
Identities = 23/25 (92%)
Strand = Plus / Plus
Query: 20233 cttgggtgggttcttgctgaagaac 20257
||||| ||||||||||||| |||||
Sbjct: 1031 cttggttgggttcttgctggagaac 1055
>ISRso21
Length = 2032
Score = 34.2 bits (17), Expect = 9.4
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 17399 gcttccgggcgctggccagcg 17419
||||||||| |||||||||||
Sbjct: 428 gcttccgggtgctggccagcg 448
>ISAzs20
Length = 2811
Score = 34.2 bits (17), Expect = 9.4
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 22673 tggagcgcgtcgccgag 22689
|||||||||||||||||
Sbjct: 2587 tggagcgcgtcgccgag 2603
>ISNmo4
Length = 1176
Score = 34.2 bits (17), Expect = 9.4
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 17729 tcgccgagcgcggggcg 17745
|||||||||||||||||
Sbjct: 457 tcgccgagcgcggggcg 473
>ISAra1
Length = 1116
Score = 34.2 bits (17), Expect = 9.4
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 22618 gcggtggccagcctctc 22634
|||||||||||||||||
Sbjct: 237 gcggtggccagcctctc 253
>ISGeob6
Length = 912
Score = 34.2 bits (17), Expect = 9.4
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 20385 cggccatccccgacgccggcc 20405
|||||||||||| ||||||||
Sbjct: 603 cggccatccccgccgccggcc 623
>ISMau1
Length = 914
Score = 34.2 bits (17), Expect = 9.4
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 5461 cgtccacgacctgaccg 5477
|||||||||||||||||
Sbjct: 573 cgtccacgacctgaccg 589
>ISSav6
Length = 1244
Score = 34.2 bits (17), Expect = 9.4
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 10797 tctacccatcggggatc 10813
|||||||||||||||||
Sbjct: 128 tctacccatcggggatc 144
>ISSro1
Length = 897
Score = 34.2 bits (17), Expect = 9.4
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 19541 ccacgctcgacgtcccg 19557
|||||||||||||||||
Sbjct: 140 ccacgctcgacgtcccg 156
Score = 34.2 bits (17), Expect = 9.4
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 10888 cgacgtcccgcacgagc 10904
|||||||||||||||||
Sbjct: 147 cgacgtcccgcacgagc 163
>ISRce2
Length = 1528
Score = 34.2 bits (17), Expect = 9.4
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 16304 ggatggcgcggtcctcc 16320
|||||||||||||||||
Sbjct: 933 ggatggcgcggtcctcc 917
>ISGau8
Length = 1364
Score = 34.2 bits (17), Expect = 9.4
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 18983 ctgaacggccggccccg 18999
|||||||||||||||||
Sbjct: 1199 ctgaacggccggccccg 1215
>ISPso1
Length = 1400
Score = 34.2 bits (17), Expect = 9.4
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 10999 catcgccgtgaccgcggtgcg 11019
|||||||| ||||||||||||
Sbjct: 956 catcgccgcgaccgcggtgcg 936
>ISPth1
Length = 1054
Score = 34.2 bits (17), Expect = 9.4
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 4089 gccagcatcctcgagat 4105
|||||||||||||||||
Sbjct: 299 gccagcatcctcgagat 315
>ISPaes3
Length = 1393
Score = 34.2 bits (17), Expect = 9.4
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 4153 cggcccggaccaccaac 4169
|||||||||||||||||
Sbjct: 1122 cggcccggaccaccaac 1138
>ISRssp12
Length = 1554
Score = 34.2 bits (17), Expect = 9.4
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 18025 gtcgcccgcgacatcgc 18041
|||||||||||||||||
Sbjct: 1247 gtcgcccgcgacatcgc 1263
>ISRjo3
Length = 1638
Score = 34.2 bits (17), Expect = 9.4
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 9086 ccgaggccaaggtgctg 9102
|||||||||||||||||
Sbjct: 489 ccgaggccaaggtgctg 505
>ISMno37
Length = 889
Score = 34.2 bits (17), Expect = 9.4
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 7318 cctccaggccgcgttcg 7334
|||||||||||||||||
Sbjct: 247 cctccaggccgcgttcg 231
>ISMra4
Length = 1237
Score = 34.2 bits (17), Expect = 9.4
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 6417 tcgccgccgatctcggc 6433
|||||||||||||||||
Sbjct: 142 tcgccgccgatctcggc 158
>ISMno19
Length = 1138
Score = 34.2 bits (17), Expect = 9.4
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 21844 ccacgacgatcaccggc 21860
|||||||||||||||||
Sbjct: 663 ccacgacgatcaccggc 679
>ISMno14
Length = 1428
Score = 34.2 bits (17), Expect = 9.4
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 24026 gcgcgccgccgtggcgg 24042
|||||||||||||||||
Sbjct: 1070 gcgcgccgccgtggcgg 1086
>ISPfr17
Length = 1092
Score = 34.2 bits (17), Expect = 9.4
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 19005 cctcgtcgccgagcgcg 19021
|||||||||||||||||
Sbjct: 864 cctcgtcgccgagcgcg 848
>ISPfr8
Length = 1436
Score = 34.2 bits (17), Expect = 9.4
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 17465 accacgaggccgaggtc 17481
|||||||||||||||||
Sbjct: 192 accacgaggccgaggtc 176
>ISArsp6
Length = 26712
Score = 34.2 bits (17), Expect = 9.4
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 5317 gggacggatcgccgagctgct 5337
|||||||| ||||||||||||
Sbjct: 772 gggacggaacgccgagctgct 752
Score = 34.2 bits (17), Expect = 9.4
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 22680 cgtcgccgagctgatcgtgtc 22700
|||||||| ||||||||||||
Sbjct: 9799 cgtcgccgggctgatcgtgtc 9819
Score = 34.2 bits (17), Expect = 9.4
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 10263 gcggagtagccggcgagggcg 10283
|||||| ||||||||||||||
Sbjct: 21794 gcggagcagccggcgagggcg 21814
>ISRsp8
Length = 1695
Score = 34.2 bits (17), Expect = 9.4
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 22409 ggcgctcgaggtcgacc 22425
|||||||||||||||||
Sbjct: 598 ggcgctcgaggtcgacc 582
>ISAar34
Length = 1438
Score = 34.2 bits (17), Expect = 9.4
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 6107 gacgcggtggtgtccctggac 6127
|||||||||||| ||||||||
Sbjct: 1143 gacgcggtggtggccctggac 1163
>ISAcma50
Length = 2718
Score = 34.2 bits (17), Expect = 9.4
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 22649 gcggcctggtcctgctc 22665
|||||||||||||||||
Sbjct: 1467 gcggcctggtcctgctc 1451
>ISAar30
Length = 1435
Score = 34.2 bits (17), Expect = 9.4
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 13726 aagccgagggccaggcc 13742
|||||||||||||||||
Sbjct: 1350 aagccgagggccaggcc 1334
>ISCph8
Length = 1755
Score = 34.2 bits (17), Expect = 9.4
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 22456 tcgaccggatcggcaacctca 22476
||||||| |||||||||||||
Sbjct: 920 tcgaccgcatcggcaacctca 900
>ISPelu1
Length = 1742
Score = 34.2 bits (17), Expect = 9.4
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 22456 tcgaccggatcggcaacctca 22476
||||||| |||||||||||||
Sbjct: 920 tcgaccgcatcggcaacctca 900
>ISApr8
Length = 1667
Score = 34.2 bits (17), Expect = 9.4
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 21014 ccggcagggccagggtg 21030
|||||||||||||||||
Sbjct: 1261 ccggcagggccagggtg 1245
>ISDpr5
Length = 1653
Score = 34.2 bits (17), Expect = 9.4
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 20647 ggagggctggtgcctca 20663
|||||||||||||||||
Sbjct: 624 ggagggctggtgcctca 640
>ISDde1
Length = 1479
Score = 34.2 bits (17), Expect = 9.4
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 13323 atctcgacgacgtgctcatcg 13343
|||||||||||| ||||||||
Sbjct: 370 atctcgacgacgcgctcatcg 350
>ISAde5
Length = 1270
Score = 34.2 bits (17), Expect = 9.4
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 21647 gctcgagcggctccacg 21663
|||||||||||||||||
Sbjct: 1067 gctcgagcggctccacg 1083
>ISAde1
Length = 2957
Score = 34.2 bits (17), Expect = 9.4
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 18331 gaggacgtcggcgaggt 18347
|||||||||||||||||
Sbjct: 2255 gaggacgtcggcgaggt 2239
Score = 34.2 bits (17), Expect = 9.4
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 1942 ccgcccgtcatgaggatcgtg 1962
|||||||||||||| ||||||
Sbjct: 2524 ccgcccgtcatgagcatcgtg 2544
>ISMex37
Length = 1510
Score = 34.2 bits (17), Expect = 9.4
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 11662 ggccgagatcatcgacc 11678
|||||||||||||||||
Sbjct: 666 ggccgagatcatcgacc 682
>ISMdi6
Length = 1466
Score = 34.2 bits (17), Expect = 9.4
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 8847 cggccgcgtccgcctcg 8863
|||||||||||||||||
Sbjct: 1152 cggccgcgtccgcctcg 1136
>ISMex36
Length = 1467
Score = 34.2 bits (17), Expect = 9.4
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 8847 cggccgcgtccgcctcg 8863
|||||||||||||||||
Sbjct: 1152 cggccgcgtccgcctcg 1136
>ISAcma13
Length = 1263
Score = 34.2 bits (17), Expect = 9.4
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 7191 tgttcaacgccctcaac 7207
|||||||||||||||||
Sbjct: 862 tgttcaacgccctcaac 846
>ISCARN49
Length = 2630
Score = 34.2 bits (17), Expect = 9.4
Identities = 26/29 (89%)
Strand = Plus / Minus
Query: 26627 tcgacctcatcggccgctggcaggcccgc 26655
|||||||||||| ||||| |||| |||||
Sbjct: 107 tcgacctcatcgaccgcttgcagccccgc 79
Score = 34.2 bits (17), Expect = 9.4
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 16538 tcgacctcatcgaccgc 16554
|||||||||||||||||
Sbjct: 107 tcgacctcatcgaccgc 91
>ISAzo15
Length = 2441
Score = 34.2 bits (17), Expect = 9.4
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 1613 gctggcccgctgccgac 1629
|||||||||||||||||
Sbjct: 622 gctggcccgctgccgac 638
>ISCARN16
Length = 2594
Score = 34.2 bits (17), Expect = 9.4
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 19718 gcgcccggcagcggtcg 19734
|||||||||||||||||
Sbjct: 946 gcgcccggcagcggtcg 930
>ISAli20
Length = 3828
Score = 34.2 bits (17), Expect = 9.4
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 10129 ccgcgagctcggcgagg 10145
|||||||||||||||||
Sbjct: 1930 ccgcgagctcggcgagg 1914
>ISBj7_B
Length = 2865
Score = 34.2 bits (17), Expect = 9.4
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 12203 cggtgcatcctccgccg 12219
|||||||||||||||||
Sbjct: 323 cggtgcatcctccgccg 307
Score = 34.2 bits (17), Expect = 9.4
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 24450 gcgtctggacgaactca 24466
|||||||||||||||||
Sbjct: 2461 gcgtctggacgaactca 2477
Score = 34.2 bits (17), Expect = 9.4
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 12652 gcgccgcgcgacgtccg 12668
|||||||||||||||||
Sbjct: 2657 gcgccgcgcgacgtccg 2673
>ISAfe8
Length = 1472
Score = 34.2 bits (17), Expect = 9.4
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 189 ccgcacggctgacggtg 205
|||||||||||||||||
Sbjct: 642 ccgcacggctgacggtg 626
>ISGdi16
Length = 1524
Score = 34.2 bits (17), Expect = 9.4
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 11263 catccggcaggccgagg 11279
|||||||||||||||||
Sbjct: 792 catccggcaggccgagg 808
>ISApr6
Length = 2479
Score = 34.2 bits (17), Expect = 9.4
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 17994 cgccgtcggccgcacgg 18010
|||||||||||||||||
Sbjct: 834 cgccgtcggccgcacgg 818
>ISMno3
Length = 1364
Score = 34.2 bits (17), Expect = 9.4
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 23455 tcctccacgccgccctc 23471
|||||||||||||||||
Sbjct: 143 tcctccacgccgccctc 159
>ISAli10
Length = 2584
Score = 34.2 bits (17), Expect = 9.4
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 3008 gccagcacgggcaccgg 3024
|||||||||||||||||
Sbjct: 1731 gccagcacgggcaccgg 1715
>ISAeh1
Length = 2320
Score = 34.2 bits (17), Expect = 9.4
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 20984 gcatcacccatgccggc 21000
|||||||||||||||||
Sbjct: 1700 gcatcacccatgccggc 1716
>ISFsp10
Length = 1713
Score = 34.2 bits (17), Expect = 9.4
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 19893 cgaggaactcgtgcgtc 19909
|||||||||||||||||
Sbjct: 127 cgaggaactcgtgcgtc 143
>ISAau4
Length = 3898
Score = 34.2 bits (17), Expect = 9.4
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 5776 caccgacggctccgaggccga 5796
||||||||||| |||||||||
Sbjct: 3661 caccgacggctacgaggccga 3681
>IS1557
Length = 1509
Score = 34.2 bits (17), Expect = 9.4
Identities = 23/25 (92%)
Strand = Plus / Minus
Query: 53 cacccacggaagggtcagaggagcc 77
|||||||||||| |||||| |||||
Sbjct: 60 cacccacggaagtgtcagaagagcc 36
>ISMsm6
Length = 1765
Score = 34.2 bits (17), Expect = 9.4
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 20744 cctgcaccgccaccgcg 20760
|||||||||||||||||
Sbjct: 159 cctgcaccgccaccgcg 143
>ISSsp5
Length = 2501
Score = 34.2 bits (17), Expect = 9.4
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 11182 gacgatcgaggagcgcg 11198
|||||||||||||||||
Sbjct: 2289 gacgatcgaggagcgcg 2273
>ISNmo3
Length = 1061
Score = 34.2 bits (17), Expect = 9.4
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 16204 agctcctgggccagctcgcgg 16224
||||||| |||||||||||||
Sbjct: 192 agctcctcggccagctcgcgg 172
Score = 34.2 bits (17), Expect = 9.4
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 20472 tcaccgctggcttggcg 20488
|||||||||||||||||
Sbjct: 756 tcaccgctggcttggcg 740
>ISSpwi1
Length = 1269
Score = 34.2 bits (17), Expect = 9.4
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 14388 gcggaaccggagggcga 14404
|||||||||||||||||
Sbjct: 1186 gcggaaccggagggcga 1170
>ISBcen23
Length = 1195
Score = 34.2 bits (17), Expect = 9.4
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 9085 gccgaggccaaggtgct 9101
|||||||||||||||||
Sbjct: 1025 gccgaggccaaggtgct 1041
>ISXc8
Length = 1227
Score = 34.2 bits (17), Expect = 9.4
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 13570 gatggtgatccgggctg 13586
|||||||||||||||||
Sbjct: 857 gatggtgatccgggctg 873
>ISAusp1
Length = 3418
Score = 34.2 bits (17), Expect = 9.4
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 5436 tggccgcgatcgcgctg 5452
|||||||||||||||||
Sbjct: 1323 tggccgcgatcgcgctg 1339
>ISSav4
Length = 1426
Score = 34.2 bits (17), Expect = 9.4
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 24302 ctggacggccgggccatcggc 24322
||||||||||||| |||||||
Sbjct: 683 ctggacggccggggcatcggc 703
>ISSav2
Length = 1938
Score = 34.2 bits (17), Expect = 9.4
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 19720 gcccggcagcggtcggg 19736
|||||||||||||||||
Sbjct: 1126 gcccggcagcggtcggg 1110
>ISNha2
Length = 1455
Score = 34.2 bits (17), Expect = 9.4
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 15978 gccgatcgcctcgccggcggc 15998
||||||||||||| |||||||
Sbjct: 350 gccgatcgcctcgtcggcggc 370
>ISGvi2
Length = 1487
Score = 34.2 bits (17), Expect = 9.4
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 23151 atgagccaccctgctgc 23167
|||||||||||||||||
Sbjct: 1435 atgagccaccctgctgc 1419
>ISBcen13
Length = 1957
Score = 34.2 bits (17), Expect = 9.4
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 10729 cgccttcaccgccacgc 10745
|||||||||||||||||
Sbjct: 506 cgccttcaccgccacgc 522
>ISXax1
Length = 1329
Score = 34.2 bits (17), Expect = 9.4
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 10819 cgtcgaggaggccgagc 10835
|||||||||||||||||
Sbjct: 942 cgtcgaggaggccgagc 958
>ISEch3
Length = 1363
Score = 34.2 bits (17), Expect = 9.4
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 8804 gaaggagcgtccacatg 8820
|||||||||||||||||
Sbjct: 70 gaaggagcgtccacatg 86
>ISAzvi3
Length = 1424
Score = 34.2 bits (17), Expect = 9.4
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 20752 gccaccgcggcgagcgccacg 20772
||||||||||||| |||||||
Sbjct: 1072 gccaccgcggcgaccgccacg 1052
>ISMmg1
Length = 1359
Score = 34.2 bits (17), Expect = 9.4
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 24872 ggaggagcccgcctccg 24888
|||||||||||||||||
Sbjct: 594 ggaggagcccgcctccg 578
Score = 34.2 bits (17), Expect = 9.4
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 16865 ggccggcgcggcgggcg 16881
|||||||||||||||||
Sbjct: 1117 ggccggcgcggcgggcg 1133
>ISBlo11
Length = 1432
Score = 34.2 bits (17), Expect = 9.4
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 24486 cgggcgaggggctcgcc 24502
|||||||||||||||||
Sbjct: 271 cgggcgaggggctcgcc 255
>ISPpu9
Length = 2043
Score = 34.2 bits (17), Expect = 9.4
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 501 ccatcttgagcaggtcg 517
|||||||||||||||||
Sbjct: 485 ccatcttgagcaggtcg 469
>ISXc6
Length = 1500
Score = 34.2 bits (17), Expect = 9.4
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 16829 ccaacgccgtccacggc 16845
|||||||||||||||||
Sbjct: 247 ccaacgccgtccacggc 231
>ISPsp2
Length = 1416
Score = 34.2 bits (17), Expect = 9.4
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 19163 tcgatgacggcgcgctc 19179
|||||||||||||||||
Sbjct: 215 tcgatgacggcgcgctc 199
>ISPa42
Length = 16941
Score = 34.2 bits (17), Expect = 9.4
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 5928 agctcgaggacgccgagcgcg 5948
||||||| |||||||||||||
Sbjct: 14423 agctcgaagacgccgagcgcg 14443
>ISH8E
Length = 1403
Score = 34.2 bits (17), Expect = 9.4
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 19536 cgagaccacgctcgacg 19552
|||||||||||||||||
Sbjct: 386 cgagaccacgctcgacg 370
>ISBli2
Length = 1467
Score = 34.2 bits (17), Expect = 9.4
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 4892 tcctggcccgtcgacgcgatc 4912
||||||||||||||| |||||
Sbjct: 576 tcctggcccgtcgactcgatc 596
>ISAav1
Length = 2532
Score = 34.2 bits (17), Expect = 9.4
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 4207 ccctggcagccgaggcc 4223
|||||||||||||||||
Sbjct: 395 ccctggcagccgaggcc 411
>IS66
Length = 2556
Score = 34.2 bits (17), Expect = 9.4
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 1967 cgatcgcctcggcgacc 1983
|||||||||||||||||
Sbjct: 2211 cgatcgcctcggcgacc 2195
>IS466
Length = 1628
Score = 34.2 bits (17), Expect = 9.4
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 9264 tcctcgatgaccagcgg 9280
|||||||||||||||||
Sbjct: 120 tcctcgatgaccagcgg 104
>ISPa45
Length = 1637
Score = 34.2 bits (17), Expect = 9.4
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 19581 cgacgtcgccgacggcc 19597
|||||||||||||||||
Sbjct: 569 cgacgtcgccgacggcc 585
>IS1647
Length = 878
Score = 34.2 bits (17), Expect = 9.4
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 21860 cctcgcggtcccctcgc 21876
|||||||||||||||||
Sbjct: 175 cctcgcggtcccctcgc 159
>IS298
Length = 845
Score = 34.2 bits (17), Expect = 9.4
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 2151 gtcggggatggcctggcgcag 2171
||||| |||||||||||||||
Sbjct: 625 gtcggcgatggcctggcgcag 605
>IS1419
Length = 1215
Score = 34.2 bits (17), Expect = 9.4
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 7174 cctggtcctcgctcagc 7190
|||||||||||||||||
Sbjct: 539 cctggtcctcgctcagc 523
>IS1411
Length = 1419
Score = 34.2 bits (17), Expect = 9.4
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 19163 tcgatgacggcgcgctc 19179
|||||||||||||||||
Sbjct: 215 tcgatgacggcgcgctc 199
>IS1373
Length = 817
Score = 34.2 bits (17), Expect = 9.4
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 5058 ccgcgctcgtgcgcggcgatg 5078
|||||||||||| ||||||||
Sbjct: 687 ccgcgctcgtgcccggcgatg 667
>IS1326
Length = 2470
Score = 34.2 bits (17), Expect = 9.4
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 10628 tccaggaacaccgtccgcaag 10648
|||||||||||||| ||||||
Sbjct: 198 tccaggaacaccgttcgcaag 218
>IS1295
Length = 1456
Score = 34.2 bits (17), Expect = 9.4
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 23197 tcggtggcggtccggtg 23213
|||||||||||||||||
Sbjct: 1430 tcggtggcggtccggtg 1414
>IS1249
Length = 1385
Score = 34.2 bits (17), Expect = 9.4
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 19158 cgccgtcgatgacggcg 19174
|||||||||||||||||
Sbjct: 627 cgccgtcgatgacggcg 611
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_29_length_27217_cov_95.9734_ID_5226
(27,217 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISFsp4 | IS200/IS605 | Frankia sp. | 46 | 0.002 | |
| IS110 | IS110 | - | Streptomyces coelicolor | 44 | 0.010 |
| ISPebe1 | IS256 | Pelagibaca bermudensis | 40 | 0.15 | |
| ISHade1 | IS200/IS605 | IS1341 | Haloferax denitrificans | 38 | 0.59 |
| ISHko4 | IS200/IS605 | IS1341 | Halorubrum kocurii | 38 | 0.59 |
| ISAzs1 | IS701 | Azospirillum sp. | 38 | 0.59 | |
| ISSav7 | IS481 | Streptomyces avermitilis | 38 | 0.59 | |
| ISMno29 | IS110 | Methylobacterium nodulans | 36 | 2.3 | |
| ISSoc8 | IS200/IS605 | IS1341 | Synechococcus sp. | 36 | 2.3 |
| ISNma22 | IS200/IS605 | IS1341 | Natrialba magadii | 36 | 2.3 |
| ISIde2 | IS21 | Ideonella dechloratans | 36 | 2.3 | |
| ISPa43 | Tn3 | Pseudomonas aeruginosa | 36 | 2.3 | |
| ISPa40 | Tn3 | Pseudomonas aeruginosa | 36 | 2.3 | |
| ISVsp5 | IS4 | IS4Sa | Verrucomicrobium spinosum | 36 | 2.3 |
| ISButh5 | IS5 | Burkholderia thailandensis | 36 | 2.3 | |
| ISRsp17 | ISNCY | ISDol1 | Rhizobium sp. | 36 | 2.3 |
| ISCph13 | IS5 | IS5 | Chlorobium phaeobacteroides | 36 | 2.3 |
| ISAau2 | IS21 | Arthrobacter aurescens | 36 | 2.3 | |
| ISAar30 | ISL3 | Arthrobacter arilaitensis | 36 | 2.3 | |
| ISAzba6 | IS630 | Azospirillum brasilense | 36 | 2.3 | |
| ISAnsp9 | ISAs1 | Anaeromyxobacter sp. | 36 | 2.3 | |
| ISMex23 | IS200/IS605 | IS1341 | Methylobacterium extorquens | 36 | 2.3 |
| ISGdi8 | IS256 | Gluconacetobacter diazotrophicus | 36 | 2.3 | |
| ISDge9 | IS4 | IS10 | Deinococcus geothermalis | 36 | 2.3 |
| ISRba2 | IS4 | IS50 | Rhodopirellula baltica | 36 | 2.3 |
| ISSpo8 | IS1595 | ISNwi1 | Silicibacter pomeroyi | 36 | 2.3 |
| ISHma5 | ISH6 | Haloarcula marismortui | 36 | 2.3 | |
| ISH15 | IS6 | Haloarcula marismortui | 36 | 2.3 | |
| ISBcen5 | IS110 | IS1111 | Burkholderia cenocepacia | 36 | 2.3 |
| ISGsu7 | IS3 | Geobacter sulfurreducens | 36 | 2.3 | |
| ISRfr1 | IS630 | - | Rhizobium fredii | 36 | 2.3 |
| ISMt3 | IS21 | - | Mycobacterium tuberculosis | 36 | 2.3 |
| ISMbo1 | IS21 | - | Mycobacterium bovis | 36 | 2.3 |
| ISSna1 | ISNCY | ISDol1 | Streptomyces natalensis | 34 | 9.2 |
| ISAeme3 | IS4 | ISH8 | Aeromonas media | 34 | 9.2 |
| ISHarch16 | IS200/IS605 | IS1341 | Halophilic archaeon | 34 | 9.2 |
| ISSfr3 | ISKra4 | ISAzba1 | Sinorhizobium fredii | 34 | 9.2 |
| ISNha10 | IS256 | Nitrobacter hamburgensis | 34 | 9.2 | |
| ISMva4 | IS256 | Mycobacterium vanbaalenii | 34 | 9.2 | |
| ISPfe2 | IS1634 | Paracoccus ferrooxidans | 34 | 9.2 | |
| ISAzs17 | Tn3 | Azospirillum sp. | 34 | 9.2 | |
| ISAzs2 | IS21 | Azospirillum sp. | 34 | 9.2 | |
| ISGeob1 | IS5 | ISL2 | Geodermatophilus obscurus | 34 | 9.2 |
| ISAcfe2 | IS1182 | Acidimicrobium ferrooxidans | 34 | 9.2 | |
| ISAcfe1 | IS1182 | Acidimicrobium ferrooxidans | 34 | 9.2 | |
| ISPso1 | IS256 | Paracoccus solventivorans | 34 | 9.2 | |
| ISPpa7 | IS66 | Paracoccus pantotrophus | 34 | 9.2 | |
| ISHwa13 | ISH3 | Haloquadratum walsbyi | 34 | 9.2 | |
| ISRjo3 | ISNCY | ISDol1 | Rhodococcus jostii | 34 | 9.2 |
| ISRpa8 | IS5 | IS5 | Rhodopseudomonas palustris | 34 | 9.2 |
| ISRop2 | ISAzo13 | Rhodococcus opacus | 34 | 9.2 | |
| ISRhru4 | IS256 | Rhodospirillum rubrum | 34 | 9.2 | |
| ISMno27 | IS6 | Methylobacterium nodulans | 34 | 9.2 | |
| ISPfr1 | ISL3 | Propionibacterium freudenreichii | 34 | 9.2 | |
| ISAcl2 | IS3 | IS3 | Arthrobacter chlorophenolicus | 34 | 9.2 |
| ISAar45 | IS3 | IS3 | Arthrobacter arilaitensis | 34 | 9.2 |
| ISStr1 | IS1380 | Salinispora tropica | 34 | 9.2 | |
| IS693 | IS66 | Rhizobium sp. | 34 | 9.2 | |
| ISTro1 | IS1380 | Thiocapsa roseopersicina | 34 | 9.2 | |
| ISMdi2 | ISL3 | Methylobacterium dichloromethanicum | 34 | 9.2 | |
| ISMex38 | Tn3 | Methylobacterium extorquens | 34 | 9.2 | |
| ISMdi1 | IS630 | Methylobacterium dichloromethanicum | 34 | 9.2 | |
| ISMex6 | ISNCY | IS1202 | Methylobacterium extorquens | 34 | 9.2 |
| ISAch1 | IS5 | IS5 | Achromobacter sp. | 34 | 9.2 |
| ISThsp12 | IS1634 | Thiomonas sp. | 34 | 9.2 | |
| ISCARN45 | IS256 | Metagenomic data from CARNOULES | 34 | 9.2 | |
| ISCARN16 | IS21 | Metagenomic data from CARNOULES | 34 | 9.2 | |
| ISPa29 | IS110 | IS1111 | Pseudomonas aeruginosa | 34 | 9.2 |
| ISBj7_B | IS66 | Bradyrhizobium japonicum | 34 | 9.2 | |
| ISAnsp3 | IS66 | Anaeromyxobacter sp. | 34 | 9.2 | |
| ISFpe1 | IS66 | Fulvimarina pelagi | 34 | 9.2 | |
| ISApr6 | IS66 | Alpha proteobacterium | 34 | 9.2 | |
| ISBad1 | IS21 | Bifidobacterium adolescentis | 34 | 9.2 | |
| IS1554 | IS256 | Mycobacterium tuberculosis | 34 | 9.2 | |
| ISRsp3 | IS21 | Rhizobium sp. | 34 | 9.2 | |
| ISMva2 | IS481 | Mycobacterium vanbaalenii | 34 | 9.2 | |
| ISRhsp3 | IS481 | Rhodobacter sphaeroides | 34 | 9.2 | |
| ISMxa2 | IS3 | IS407 | Myxococcus xanthus | 34 | 9.2 |
| ISAtu5 | IS3 | IS407 | Agrobacterium tumefaciens | 34 | 9.2 |
| ISXo18 | IS3 | IS407 | Xanthomonas oryzae | 34 | 9.2 |
| ISXo17 | IS3 | IS407 | Xanthomonas oryzae | 34 | 9.2 |
| ISCte3 | IS3 | IS407 | Comamonas testosteroni | 34 | 9.2 |
| ISBvi1 | IS4 | IS4 | Burkholderia vietnamiensis | 34 | 9.2 |
| ISMmg4 | IS701 | Magnetospirillum magneticum | 34 | 9.2 | |
| ISAzvi7 | IS4 | IS50 | Azotobacter vinelandii | 34 | 9.2 |
| ISAzvi5 | IS4 | IS10 | Azotobacter vinelandii | 34 | 9.2 |
| ISLxx4 | IS481 | Leifsonia xyli | 34 | 9.2 | |
| ISLxx1 | IS21 | Leifsonia xyli | 34 | 9.2 | |
| ISMlo2 | IS110 | IS1111 | Mesorhizobium loti | 34 | 9.2 |
| ISGsu5 | IS110 | Geobacter sulfurreducens | 34 | 9.2 | |
| ISRm2 | IS66 | Sinorhizobium meliloti | 34 | 9.2 | |
| IS1407 | IS256 | - | Mycobacterium celatum | 34 | 9.2 |
| IS1404 | IS3 | IS407 | Xanthomonas campestris | 34 | 9.2 |
| IS1403 | IS3 | IS407 | Xanthomonas campestris | 34 | 9.2 |
| IS1389-B | IS3 | IS407 | Xanthomonas campestris | 34 | 9.2 |
| IS1389 | IS3 | IS407 | Xanthomonas campestris | 34 | 9.2 |
| IS1113 | IS256 | - | Xanthomonas oryzae | 34 | 9.2 |
>ISFsp4
Length = 1784
Score = 46.1 bits (23), Expect = 0.002
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 22230 tcgtcgtcgacgtcgacgacgtc 22252
|||||||||||||||||||||||
Sbjct: 1002 tcgtcgtcgacgtcgacgacgtc 1024
Score = 40.1 bits (20), Expect = 0.15
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 22231 cgtcgtcgacgtcgacgacg 22250
||||||||||||||||||||
Sbjct: 1022 cgtcgtcgacgtcgacgacg 1003
Score = 34.2 bits (17), Expect = 9.2
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 11232 cggcttcaccgtcacgc 11248
|||||||||||||||||
Sbjct: 865 cggcttcaccgtcacgc 881
>IS110
Length = 1558
Score = 44.1 bits (22), Expect = 0.010
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 15487 cgaccaggacatcgcggccgaggcca 15512
|||||||||| |||||||||||||||
Sbjct: 693 cgaccaggacctcgcggccgaggcca 718
>ISPebe1
Length = 1363
Score = 40.1 bits (20), Expect = 0.15
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 22443 atgaggatcgcgccgacgag 22462
||||||||||||||||||||
Sbjct: 1187 atgaggatcgcgccgacgag 1168
Score = 36.2 bits (18), Expect = 2.3
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 5230 gcgccgatgccgacctgc 5247
||||||||||||||||||
Sbjct: 140 gcgccgatgccgacctgc 157
>ISHade1
Length = 1528
Score = 38.2 bits (19), Expect = 0.59
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 23367 aggtgtcgtcggtgcggtt 23385
|||||||||||||||||||
Sbjct: 419 aggtgtcgtcggtgcggtt 401
>ISHko4
Length = 1517
Score = 38.2 bits (19), Expect = 0.59
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 23367 aggtgtcgtcggtgcggtt 23385
|||||||||||||||||||
Sbjct: 406 aggtgtcgtcggtgcggtt 388
>ISAzs1
Length = 1508
Score = 38.2 bits (19), Expect = 0.59
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 8875 gccggtgtcgtcgatgatc 8893
|||||||||||||||||||
Sbjct: 411 gccggtgtcgtcgatgatc 393
>ISSav7
Length = 2992
Score = 38.2 bits (19), Expect = 0.59
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 4415 ccgtcgtccccgacgacgc 4433
|||||||||||||||||||
Sbjct: 1667 ccgtcgtccccgacgacgc 1685
Score = 34.2 bits (17), Expect = 9.2
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 3119 cgagctgctggagaacg 3135
|||||||||||||||||
Sbjct: 857 cgagctgctggagaacg 841
>ISMno29
Length = 1192
Score = 36.2 bits (18), Expect = 2.3
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 16582 ggcctcgcgccggtcgccgacg 16603
||||| ||||||||||||||||
Sbjct: 896 ggcctggcgccggtcgccgacg 917
>ISSoc8
Length = 1285
Score = 36.2 bits (18), Expect = 2.3
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 791 ggtcacggacggcctgga 808
||||||||||||||||||
Sbjct: 707 ggtcacggacggcctgga 690
>ISNma22
Length = 1417
Score = 36.2 bits (18), Expect = 2.3
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 22871 tcgtcgacgacctcgacgtagc 22892
||||||| ||||||||||||||
Sbjct: 939 tcgtcgaagacctcgacgtagc 960
>ISIde2
Length = 2529
Score = 36.2 bits (18), Expect = 2.3
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 12220 tcgtcgccgtcctcggcg 12237
||||||||||||||||||
Sbjct: 640 tcgtcgccgtcctcggcg 657
>ISPa43
Length = 19903
Score = 36.2 bits (18), Expect = 2.3
Identities = 27/30 (90%)
Strand = Plus / Plus
Query: 17384 cgcgctgctcggctcgaacggcgccggcaa 17413
||||||| ||||| ||| ||||||||||||
Sbjct: 11449 cgcgctgatcggcccgaccggcgccggcaa 11478
Score = 36.2 bits (18), Expect = 2.3
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 14291 tcgtcggtgctcaaggcc 14308
||||||||||||||||||
Sbjct: 11480 tcgtcggtgctcaaggcc 11497
Score = 34.2 bits (17), Expect = 9.2
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 7105 acccgtcccggtgagccgcag 7125
||||| |||||||||||||||
Sbjct: 8324 acccggcccggtgagccgcag 8304
Score = 34.2 bits (17), Expect = 9.2
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 13276 acgagggcgagatcctc 13292
|||||||||||||||||
Sbjct: 10666 acgagggcgagatcctc 10682
>ISPa40
Length = 6592
Score = 36.2 bits (18), Expect = 2.3
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 11485 ctcggccggcacatccac 11502
||||||||||||||||||
Sbjct: 4316 ctcggccggcacatccac 4333
>ISVsp5
Length = 1426
Score = 36.2 bits (18), Expect = 2.3
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 3084 ctccacccggcgcagcgg 3101
||||||||||||||||||
Sbjct: 887 ctccacccggcgcagcgg 870
>ISButh5
Length = 1350
Score = 36.2 bits (18), Expect = 2.3
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 24348 cgatcgtctgctcgagca 24365
||||||||||||||||||
Sbjct: 425 cgatcgtctgctcgagca 442
>ISRsp17
Length = 1664
Score = 36.2 bits (18), Expect = 2.3
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 2531 ggtcggggagccggtccc 2548
||||||||||||||||||
Sbjct: 937 ggtcggggagccggtccc 954
>ISCph13
Length = 1636
Score = 36.2 bits (18), Expect = 2.3
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 5127 gtactggaggtacgggcc 5144
||||||||||||||||||
Sbjct: 396 gtactggaggtacgggcc 379
Score = 36.2 bits (18), Expect = 2.3
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 26576 acctggaccggctgatcgccgc 26597
|||||||||||||| |||||||
Sbjct: 1487 acctggaccggctgctcgccgc 1508
>ISAau2
Length = 2222
Score = 36.2 bits (18), Expect = 2.3
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 16545 ggccgaggtcgcggtctt 16562
||||||||||||||||||
Sbjct: 2130 ggccgaggtcgcggtctt 2113
>ISAar30
Length = 1435
Score = 36.2 bits (18), Expect = 2.3
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 25254 agctgtcgtgcgacctggggcg 25275
|||||| |||||||||||||||
Sbjct: 23 agctgtggtgcgacctggggcg 44
>ISAzba6
Length = 1138
Score = 36.2 bits (18), Expect = 2.3
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 25780 tgcaggaggtggcgcgcagcgc 25801
||||||||||||||||| ||||
Sbjct: 194 tgcaggaggtggcgcgccgcgc 215
>ISAnsp9
Length = 1704
Score = 36.2 bits (18), Expect = 2.3
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 6842 accacctggaacgacgcgccgt 6863
|||||||||||| |||||||||
Sbjct: 840 accacctggaacaacgcgccgt 819
>ISMex23
Length = 1390
Score = 36.2 bits (18), Expect = 2.3
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 13354 tcgacgcggacggctggc 13371
||||||||||||||||||
Sbjct: 576 tcgacgcggacggctggc 593
>ISGdi8
Length = 1356
Score = 36.2 bits (18), Expect = 2.3
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 12672 gccgagcacctcacgacg 12689
||||||||||||||||||
Sbjct: 686 gccgagcacctcacgacg 669
>ISDge9
Length = 1127
Score = 36.2 bits (18), Expect = 2.3
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 23593 ctgctcgtcctggaccgc 23610
||||||||||||||||||
Sbjct: 344 ctgctcgtcctggaccgc 361
>ISRba2
Length = 1365
Score = 36.2 bits (18), Expect = 2.3
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 13353 gtcgacgcggacggctgg 13370
||||||||||||||||||
Sbjct: 901 gtcgacgcggacggctgg 918
>ISSpo8
Length = 1863
Score = 36.2 bits (18), Expect = 2.3
Identities = 24/26 (92%)
Strand = Plus / Plus
Query: 14021 tccgacggcgccctgctcgccctggc 14046
||||| ||||| ||||||||||||||
Sbjct: 295 tccgagggcgcactgctcgccctggc 320
>ISHma5
Length = 1449
Score = 36.2 bits (18), Expect = 2.3
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 551 atctccgagaggatgccg 568
||||||||||||||||||
Sbjct: 538 atctccgagaggatgccg 521
>ISH15
Length = 697
Score = 36.2 bits (18), Expect = 2.3
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 26181 acgacgtcgacgacgccg 26198
||||||||||||||||||
Sbjct: 451 acgacgtcgacgacgccg 468
>ISBcen5
Length = 1425
Score = 36.2 bits (18), Expect = 2.3
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 12554 gctcgacgagcagatcgc 12571
||||||||||||||||||
Sbjct: 690 gctcgacgagcagatcgc 707
>ISGsu7
Length = 1351
Score = 36.2 bits (18), Expect = 2.3
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 20925 tcggtcggggccgctgctgctc 20946
|||||||| |||||||||||||
Sbjct: 980 tcggtcggtgccgctgctgctc 1001
>ISRfr1
Length = 1136
Score = 36.2 bits (18), Expect = 2.3
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 5713 tcggcgagcaggtggttg 5730
||||||||||||||||||
Sbjct: 337 tcggcgagcaggtggttg 354
>ISMt3
Length = 2213
Score = 36.2 bits (18), Expect = 2.3
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 16545 ggccgaggtcgcggtctt 16562
||||||||||||||||||
Sbjct: 2109 ggccgaggtcgcggtctt 2092
>ISMbo1
Length = 2212
Score = 36.2 bits (18), Expect = 2.3
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 16545 ggccgaggtcgcggtctt 16562
||||||||||||||||||
Sbjct: 2108 ggccgaggtcgcggtctt 2091
>ISSna1
Length = 1560
Score = 34.2 bits (17), Expect = 9.2
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 14692 gcccggcacggtcgtcg 14708
|||||||||||||||||
Sbjct: 1167 gcccggcacggtcgtcg 1183
>ISAeme3
Length = 1384
Score = 34.2 bits (17), Expect = 9.2
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 26764 cagccgccagacgccgg 26780
|||||||||||||||||
Sbjct: 508 cagccgccagacgccgg 492
>ISHarch16
Length = 1419
Score = 34.2 bits (17), Expect = 9.2
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 17499 aacgtcacccacctcga 17515
|||||||||||||||||
Sbjct: 612 aacgtcacccacctcga 628
>ISSfr3
Length = 1448
Score = 34.2 bits (17), Expect = 9.2
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 9354 tgacgaggctgttggcg 9370
|||||||||||||||||
Sbjct: 1301 tgacgaggctgttggcg 1285
>ISNha10
Length = 1428
Score = 34.2 bits (17), Expect = 9.2
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 11270 tcggccccaacggtgcg 11286
|||||||||||||||||
Sbjct: 302 tcggccccaacggtgcg 286
>ISMva4
Length = 1458
Score = 34.2 bits (17), Expect = 9.2
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 11657 aacgcgtcgagctcggc 11673
|||||||||||||||||
Sbjct: 1012 aacgcgtcgagctcggc 996
>ISPfe2
Length = 1884
Score = 34.2 bits (17), Expect = 9.2
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 5921 cggcctgctcggcggcg 5937
|||||||||||||||||
Sbjct: 1179 cggcctgctcggcggcg 1163
>ISAzs17
Length = 7252
Score = 34.2 bits (17), Expect = 9.2
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 23674 gcaggcgaggttgccca 23690
|||||||||||||||||
Sbjct: 3951 gcaggcgaggttgccca 3935
>ISAzs2
Length = 2609
Score = 34.2 bits (17), Expect = 9.2
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 9792 gggccggcaggacggcg 9808
|||||||||||||||||
Sbjct: 906 gggccggcaggacggcg 890
>ISGeob1
Length = 1020
Score = 34.2 bits (17), Expect = 9.2
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 6410 gggcggcgttgacctgcacgt 6430
|||||||| ||||||||||||
Sbjct: 598 gggcggcgatgacctgcacgt 578
>ISAcfe2
Length = 1771
Score = 34.2 bits (17), Expect = 9.2
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 3457 ctcggcgaggaaggcgt 3473
|||||||||||||||||
Sbjct: 195 ctcggcgaggaaggcgt 179
>ISAcfe1
Length = 1772
Score = 34.2 bits (17), Expect = 9.2
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 3457 ctcggcgaggaaggcgt 3473
|||||||||||||||||
Sbjct: 195 ctcggcgaggaaggcgt 179
>ISPso1
Length = 1400
Score = 34.2 bits (17), Expect = 9.2
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 8589 cgatgacgtcggcgcgc 8605
|||||||||||||||||
Sbjct: 1185 cgatgacgtcggcgcgc 1169
>ISPpa7
Length = 2731
Score = 34.2 bits (17), Expect = 9.2
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 20178 cccgcgccgcccggcgtggtg 20198
||||| |||||||||||||||
Sbjct: 1876 cccgccccgcccggcgtggtg 1896
>ISHwa13
Length = 1459
Score = 34.2 bits (17), Expect = 9.2
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 26724 gtcgcgcccgccgcgctgcgg 26744
|||||||||||| ||||||||
Sbjct: 1112 gtcgcgcccgccccgctgcgg 1092
>ISRjo3
Length = 1638
Score = 34.2 bits (17), Expect = 9.2
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 3297 gtcggcggtgaccgtccgggg 3317
||||||||||||||| |||||
Sbjct: 1249 gtcggcggtgaccgtgcgggg 1229
>ISRpa8
Length = 1540
Score = 34.2 bits (17), Expect = 9.2
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 8310 cggcggcggcgaggacc 8326
|||||||||||||||||
Sbjct: 1410 cggcggcggcgaggacc 1394
>ISRop2
Length = 2171
Score = 34.2 bits (17), Expect = 9.2
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 7590 ggtgcgggtgcgggtgg 7606
|||||||||||||||||
Sbjct: 1134 ggtgcgggtgcgggtgg 1118
Score = 34.2 bits (17), Expect = 9.2
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 9832 ggcgagcatcgcgacggccgc 9852
||||||||||||||| |||||
Sbjct: 1341 ggcgagcatcgcgacagccgc 1321
>ISRhru4
Length = 1411
Score = 34.2 bits (17), Expect = 9.2
Identities = 23/25 (92%)
Strand = Plus / Plus
Query: 5230 gcgccgatgccgacctgccgcgcga 5254
||||||||||||| |||| ||||||
Sbjct: 194 gcgccgatgccgatctgctgcgcga 218
>ISMno27
Length = 893
Score = 34.2 bits (17), Expect = 9.2
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 4432 gcgccgggccgtcttga 4448
|||||||||||||||||
Sbjct: 710 gcgccgggccgtcttga 694
>ISPfr1
Length = 1427
Score = 34.2 bits (17), Expect = 9.2
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 18657 tcgacgagctcggcctg 18673
|||||||||||||||||
Sbjct: 163 tcgacgagctcggcctg 179
>ISAcl2
Length = 1243
Score = 34.2 bits (17), Expect = 9.2
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 6407 caagggcggcgttgacc 6423
|||||||||||||||||
Sbjct: 504 caagggcggcgttgacc 488
>ISAar45
Length = 1280
Score = 34.2 bits (17), Expect = 9.2
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 12870 ccgcggatctgggagtc 12886
|||||||||||||||||
Sbjct: 156 ccgcggatctgggagtc 172
>ISStr1
Length = 1664
Score = 34.2 bits (17), Expect = 9.2
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 18586 ggccatcgccgaccttg 18602
|||||||||||||||||
Sbjct: 339 ggccatcgccgaccttg 355
>IS693
Length = 3078
Score = 34.2 bits (17), Expect = 9.2
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 3227 cgtcgtggccggcccgg 3243
|||||||||||||||||
Sbjct: 2576 cgtcgtggccggcccgg 2592
>ISTro1
Length = 1735
Score = 34.2 bits (17), Expect = 9.2
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 17884 agaacgcccggcgcgcc 17900
|||||||||||||||||
Sbjct: 952 agaacgcccggcgcgcc 968
>ISMdi2
Length = 1689
Score = 34.2 bits (17), Expect = 9.2
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 1868 cgggtggtcggcatcga 1884
|||||||||||||||||
Sbjct: 528 cgggtggtcggcatcga 544
>ISMex38
Length = 3841
Score = 34.2 bits (17), Expect = 9.2
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 24345 ccccgatcgtctgctcg 24361
|||||||||||||||||
Sbjct: 3636 ccccgatcgtctgctcg 3652
>ISMdi1
Length = 1058
Score = 34.2 bits (17), Expect = 9.2
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 12506 cgcggtcgaggcgcagg 12522
|||||||||||||||||
Sbjct: 275 cgcggtcgaggcgcagg 291
>ISMex6
Length = 1535
Score = 34.2 bits (17), Expect = 9.2
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 20584 cagccccggcttcgtcg 20600
|||||||||||||||||
Sbjct: 479 cagccccggcttcgtcg 495
>ISAch1
Length = 1192
Score = 34.2 bits (17), Expect = 9.2
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 21819 aggttcggcagggcgaacagc 21839
||||||| |||||||||||||
Sbjct: 995 aggttcgacagggcgaacagc 975
>ISThsp12
Length = 2004
Score = 34.2 bits (17), Expect = 9.2
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 20984 gggtgcgccgccgggcc 21000
|||||||||||||||||
Sbjct: 1281 gggtgcgccgccgggcc 1265
>ISCARN45
Length = 1430
Score = 34.2 bits (17), Expect = 9.2
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 5364 gcgggtcttgaggatcttgcg 5384
||||||||||| |||||||||
Sbjct: 1169 gcgggtcttgatgatcttgcg 1149
>ISCARN16
Length = 2594
Score = 34.2 bits (17), Expect = 9.2
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 23133 tctccacgtagccgtcg 23149
|||||||||||||||||
Sbjct: 1060 tctccacgtagccgtcg 1044
>ISPa29
Length = 1534
Score = 34.2 bits (17), Expect = 9.2
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 18759 tgcccacggtgctgatg 18775
|||||||||||||||||
Sbjct: 820 tgcccacggtgctgatg 804
>ISBj7_B
Length = 2865
Score = 34.2 bits (17), Expect = 9.2
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 12914 cgacgaggccggctgga 12930
|||||||||||||||||
Sbjct: 2568 cgacgaggccggctgga 2552
>ISAnsp3
Length = 2518
Score = 34.2 bits (17), Expect = 9.2
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 13277 cgagggcgagatcctcc 13293
|||||||||||||||||
Sbjct: 38 cgagggcgagatcctcc 54
Score = 34.2 bits (17), Expect = 9.2
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 7326 tcgagccgatgaggatgcgga 7346
|||||||||||| ||||||||
Sbjct: 497 tcgagccgatgaagatgcgga 477
>ISFpe1
Length = 2489
Score = 34.2 bits (17), Expect = 9.2
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 4021 gtcgacgacggtctcga 4037
|||||||||||||||||
Sbjct: 1258 gtcgacgacggtctcga 1242
>ISApr6
Length = 2479
Score = 34.2 bits (17), Expect = 9.2
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 16581 cggcctcgcgccggtcgccga 16601
||||| |||||||||||||||
Sbjct: 1950 cggccacgcgccggtcgccga 1970
>ISBad1
Length = 2525
Score = 34.2 bits (17), Expect = 9.2
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 11886 caccccggacgaggtca 11902
|||||||||||||||||
Sbjct: 1698 caccccggacgaggtca 1714
>IS1554
Length = 1462
Score = 34.2 bits (17), Expect = 9.2
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 20596 cgtcgacctcgacggcc 20612
|||||||||||||||||
Sbjct: 744 cgtcgacctcgacggcc 760
>ISRsp3
Length = 2489
Score = 34.2 bits (17), Expect = 9.2
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 5478 gaggtgcagggcctgcggggc 5498
|||| ||||||||||||||||
Sbjct: 1565 gaggcgcagggcctgcggggc 1545
>ISMva2
Length = 1966
Score = 34.2 bits (17), Expect = 9.2
Identities = 23/25 (92%)
Strand = Plus / Minus
Query: 20449 aggcatcgatctcctcctggtccac 20473
||||||||||| |||||||| ||||
Sbjct: 946 aggcatcgatcgcctcctgggccac 922
>ISRhsp3
Length = 1104
Score = 34.2 bits (17), Expect = 9.2
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 1703 gatgccgttgaggtcga 1719
|||||||||||||||||
Sbjct: 848 gatgccgttgaggtcga 832
>ISMxa2
Length = 1244
Score = 34.2 bits (17), Expect = 9.2
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 11795 ccgtcgtcctcatcgag 11811
|||||||||||||||||
Sbjct: 1052 ccgtcgtcctcatcgag 1068
>ISAtu5
Length = 1271
Score = 34.2 bits (17), Expect = 9.2
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 26797 agttgctggccgagcag 26813
|||||||||||||||||
Sbjct: 266 agttgctggccgagcag 282
>ISXo18
Length = 1189
Score = 34.2 bits (17), Expect = 9.2
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 26797 agttgctggccgagcag 26813
|||||||||||||||||
Sbjct: 261 agttgctggccgagcag 277
>ISXo17
Length = 1192
Score = 34.2 bits (17), Expect = 9.2
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 26797 agttgctggccgagcag 26813
|||||||||||||||||
Sbjct: 262 agttgctggccgagcag 278
>ISCte3
Length = 1203
Score = 34.2 bits (17), Expect = 9.2
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 27030 gctggcgagctggtcaa 27046
|||||||||||||||||
Sbjct: 539 gctggcgagctggtcaa 555
>ISBvi1
Length = 1455
Score = 34.2 bits (17), Expect = 9.2
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 22282 cggcggccacactgagg 22298
|||||||||||||||||
Sbjct: 320 cggcggccacactgagg 336
>ISMmg4
Length = 1507
Score = 34.2 bits (17), Expect = 9.2
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 15081 ccctcggccagggcggc 15097
|||||||||||||||||
Sbjct: 663 ccctcggccagggcggc 647
>ISAzvi7
Length = 1450
Score = 34.2 bits (17), Expect = 9.2
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 3779 gtggacgagaagtagagccgg 3799
|||||||||||| ||||||||
Sbjct: 520 gtggacgagaaggagagccgg 540
>ISAzvi5
Length = 1328
Score = 34.2 bits (17), Expect = 9.2
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 17882 gcagaacgcccggcgcg 17898
|||||||||||||||||
Sbjct: 869 gcagaacgcccggcgcg 885
>ISLxx4
Length = 1110
Score = 34.2 bits (17), Expect = 9.2
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 9799 caggacggcgtggacgg 9815
|||||||||||||||||
Sbjct: 437 caggacggcgtggacgg 421
>ISLxx1
Length = 2205
Score = 34.2 bits (17), Expect = 9.2
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 6453 caccgggtccgcctcgc 6469
|||||||||||||||||
Sbjct: 966 caccgggtccgcctcgc 982
>ISMlo2
Length = 1402
Score = 34.2 bits (17), Expect = 9.2
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 11864 tcggccggctcatcgcc 11880
|||||||||||||||||
Sbjct: 392 tcggccggctcatcgcc 376
>ISGsu5
Length = 1400
Score = 34.2 bits (17), Expect = 9.2
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 26890 tctacgagatccacgac 26906
|||||||||||||||||
Sbjct: 538 tctacgagatccacgac 554
>ISRm2
Length = 2593
Score = 34.2 bits (17), Expect = 9.2
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 9442 cggcaggtcgacggcctcgcc 9462
||||||||||||| |||||||
Sbjct: 1190 cggcaggtcgacgacctcgcc 1170
>IS1407
Length = 1422
Score = 34.2 bits (17), Expect = 9.2
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 5318 cgacggcctcgtcgagc 5334
|||||||||||||||||
Sbjct: 535 cgacggcctcgtcgagc 519
>IS1404
Length = 1203
Score = 34.2 bits (17), Expect = 9.2
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 26797 agttgctggccgagcag 26813
|||||||||||||||||
Sbjct: 268 agttgctggccgagcag 284
>IS1403
Length = 1203
Score = 34.2 bits (17), Expect = 9.2
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 26797 agttgctggccgagcag 26813
|||||||||||||||||
Sbjct: 268 agttgctggccgagcag 284
>IS1389-B
Length = 1203
Score = 34.2 bits (17), Expect = 9.2
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 26797 agttgctggccgagcag 26813
|||||||||||||||||
Sbjct: 268 agttgctggccgagcag 284
>IS1389
Length = 1214
Score = 34.2 bits (17), Expect = 9.2
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 26797 agttgctggccgagcag 26813
|||||||||||||||||
Sbjct: 277 agttgctggccgagcag 293
>IS1113
Length = 1306
Score = 34.2 bits (17), Expect = 9.2
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 10038 cacaggtgaccgacgcg 10054
|||||||||||||||||
Sbjct: 474 cacaggtgaccgacgcg 490
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_30_length_25651_cov_95.7625_ID_5228
(25,651 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISTesp2 | ISL3 | Terrabacter sp. | 92 | 4e-17 | |
| IS1557 | ISL3 | Mycobacterium tuberculosis | 44 | 0.009 | |
| ISPla1 | IS1595 | ISPna2 | Parvibaculum lavamentivorans | 40 | 0.14 |
| ISH22 | IS200/IS605 | Halobacterium sp. | 40 | 0.14 | |
| ISAzo26 | IS91 | Azoarcus sp. | 38 | 0.55 | |
| ISSsp5 | IS21 | Sphingomonas sp. | 38 | 0.55 | |
| IS1088 | IS30 | Cupriavidus necator | 38 | 0.55 | |
| ISLxx2 | IS110 | Leifsonia xyli | 38 | 0.55 | |
| ISSme3 | IS66 | Sinorhizobium medicae | 38 | 0.55 | |
| ISHez2 | IS200/IS605 | IS1341 | Halorubrum ezzemoulense | 36 | 2.2 |
| ISMgi5 | IS256 | Mycobacterium gilvum | 36 | 2.2 | |
| ISAzs5 | ISAs1 | Azospirillum sp. | 36 | 2.2 | |
| ISAmi2 | IS5 | ISL2 | Actinosynnema mirum | 36 | 2.2 |
| ISMtsp20 | IS5 | IS1031 | Methylobacterium sp. | 36 | 2.2 |
| ISAar34 | ISL3 | Arthrobacter arilaitensis | 36 | 2.2 | |
| ISBuce1 | IS1182 | Burkholderia cepacia | 36 | 2.2 | |
| ISTha2 | ISAs1 | Thauera sp. | 36 | 2.2 | |
| ISThsp12 | IS1634 | Thiomonas sp. | 36 | 2.2 | |
| ISBj5_B | IS5 | IS5 | Bradyrhizobium japonicum | 36 | 2.2 |
| ISCARN14 | IS5 | IS1031 | Metagenomic data from CARNOULES | 36 | 2.2 |
| ISLxx6 | IS5 | IS427 | Leifsonia xyli | 36 | 2.2 |
| ISRme12 | IS3 | IS150 | Ralstonia metallidurans | 36 | 2.2 |
| ISNha2 | IS701 | Nitrobacter hamburgensis | 36 | 2.2 | |
| IS1492 | IS110 | IS1111 | Pseudomonas putida | 36 | 2.2 |
| ISXc6 | IS5 | IS5 | Xanthomonas campestris | 36 | 2.2 |
| ISSco3 | IS5 | IS1031 | Streptomyces coelicolor | 36 | 2.2 |
| IS900 | IS110 | - | Mycobacterium paratuberculosis | 36 | 2.2 |
| IS468A | IS5 | IS1031 | Streptomyces coelicolor | 36 | 2.2 |
| IS1492a | IS110 | - | Pseudomonas putida | 36 | 2.2 |
| IS1478 | IS5 | IS5 | Xanthomonas campestris | 36 | 2.2 |
| TnXo19 | Tn3 | Xanthomonas oryzae | 34 | 8.6 | |
| TnAs3 | Tn3 | Aeromonas salmonicida | 34 | 8.6 | |
| ISAeme14 | IS4 | IS4 | Aeromonas media | 34 | 8.6 |
| ISHas1 | IS200/IS605 | IS605 | Halonotius sp. | 34 | 8.6 |
| ISMpo4 | IS110 | IS1111 | Methylobacterium populi | 34 | 8.6 |
| ISMno16 | IS110 | IS1111 | Methylobacterium nodulans | 34 | 8.6 |
| ISHarch10 | IS200/IS605 | IS1341 | Halophilic archaeon | 34 | 8.6 |
| ISHma15 | IS200/IS605 | IS1341 | Haloarcula marismortui | 34 | 8.6 |
| ISHti1 | IS200/IS605 | IS605 | Halorhabdus tiamatea | 34 | 8.6 |
| ISNma17 | IS200/IS605 | IS1341 | Natrialba magadii | 34 | 8.6 |
| ISKpn25 | ISL3 | Klebsiella pneumoniae | 34 | 8.6 | |
| ISHmu3 | IS200/IS605 | Halomicrobium mukohataei | 34 | 8.6 | |
| ISH34 | IS200/IS605 | Halobacterium salinarum | 34 | 8.6 | |
| ISAra2 | ISKra4 | ISAzba1 | Agrobacterium radiobacter | 34 | 8.6 |
| ISFsp17 | ISKra4 | ISKra4 | Frankia sp. | 34 | 8.6 |
| ISHoc2 | ISKra4 | ISKra4 | Haliangium ochraceum | 34 | 8.6 |
| ISAzs27 | IS30 | Azospirillum sp. | 34 | 8.6 | |
| ISAzs24 | IS3 | IS51 | Azospirillum sp. | 34 | 8.6 |
| ISNmo4 | IS5 | IS5 | Nitrococcus mobilis | 34 | 8.6 |
| ISRhosp9 | IS5 | ISL2 | Rhodococcus sp. | 34 | 8.6 |
| ISFsp13 | ISAzo13 | Frankia sp. | 34 | 8.6 | |
| ISMno10 | IS1182 | Methylobacterium nodulans | 34 | 8.6 | |
| ISMtsp8 | IS21 | Methylobacterium sp. | 34 | 8.6 | |
| ISPfr16 | IS30 | Propionibacterium freudenreichii | 34 | 8.6 | |
| ISArsp6 | Tn3 | Arthrobacter sp. | 34 | 8.6 | |
| ISMch1 | IS3 | IS150 | Methylobacterium chloromethanicum | 34 | 8.6 |
| ISMav8 | IS1380 | Mycobacterium avium | 34 | 8.6 | |
| ISMav7 | IS1380 | Mycobacterium avium | 34 | 8.6 | |
| ISMsm11 | IS1380 | Mycobacterium smegmatis | 34 | 8.6 | |
| ISMyma7 | IS1380 | - | Mycobacterium marinum | 34 | 8.6 |
| ISMgi1 | IS1380 | Mycobacterium gilvum | 34 | 8.6 | |
| ISCgl4 | IS1380 | Corynebacterium glutamicum | 34 | 8.6 | |
| ISRjo1 | IS1380 | Rhodococcus jostii | 34 | 8.6 | |
| ISDre3 | IS1380 | Desulfotomaculum reducens | 34 | 8.6 | |
| ISAnsp12 | IS66 | Anaeromyxobacter sp. | 34 | 8.6 | |
| ISMdi27 | IS21 | Methylobacterium dichloromethanicum | 34 | 8.6 | |
| ISMdi18 | IS1595 | ISNwi1 | Methylobacterium dichloromethanicum | 34 | 8.6 |
| ISMex39 | IS21 | Methylobacterium extorquens | 34 | 8.6 | |
| ISMdi28 | IS701 | Methylobacterium dichloromethanicum | 34 | 8.6 | |
| ISStma8 | IS110 | Stenotrophomonas maltophilia | 34 | 8.6 | |
| ISCth12 | IS21 | Clostridium thermocellum | 34 | 8.6 | |
| ISMex22 | Tn3 | Methylobacterium extorquens | 34 | 8.6 | |
| ISRce1 | ISAs1 | Rhodospirillum centenum | 34 | 8.6 | |
| ISAzo37 | IS5 | IS1031 | Azoarcus sp. | 34 | 8.6 |
| ISAzo18 | IS3 | IS150 | Azoarcus sp. | 34 | 8.6 |
| ISCARN68 | IS256 | Metagenomic data from CARNOULES | 34 | 8.6 | |
| ISRhsp5 | IS66 | Rhodobacter sphaeroides | 34 | 8.6 | |
| ISAli20 | Tn3 | Azospirillum lipoferum | 34 | 8.6 | |
| ISGob4 | IS66 | ISBst12 | Gemmata obscuriglobus | 34 | 8.6 |
| ISAli1 | IS5 | IS1031 | Azospirillum lipoferum | 34 | 8.6 |
| ISGob1 | IS66 | ISBst12 | Gemmata obscuriglobus | 34 | 8.6 |
| ISAau4 | Tn3 | Arthrobacter aurescens | 34 | 8.6 | |
| ISAzca1 | IS1595 | ISNha5 | Azorhizobium caulinodans | 34 | 8.6 |
| ISSmu5 | IS982 | Streptococcus mutans | 34 | 8.6 | |
| ISDge17 | IS630 | Deinococcus geothermalis | 34 | 8.6 | |
| IS1553 | IS256 | Mycobacterium tuberculosis | 34 | 8.6 | |
| ISSpu5 | IS21 | Shewanella putrefaciens | 34 | 8.6 | |
| ISJsp2 | IS5 | IS903 | Janthinobacterium sp. | 34 | 8.6 |
| ISChy4 | IS21 | Carboxydothermus hydrogenoformans | 34 | 8.6 | |
| ISAcr2 | IS6 | Acidiphilium cryptum | 34 | 8.6 | |
| ISMxa2 | IS3 | IS407 | Myxococcus xanthus | 34 | 8.6 |
| ISRsp6 | IS4 | IS4Sa | Rhizobium sp. | 34 | 8.6 |
| ISPepr3 | IS4 | IS4Sa | Pelobacter propionicus | 34 | 8.6 |
| ISSpo3 | IS1595 | ISNwi1 | Silicibacter pomeroyi | 34 | 8.6 |
| ISXac2 | IS3 | IS407 | Xanthomonas axonopodis | 34 | 8.6 |
| ISPlu9 | IS4 | IS50 | Photorhabdus luminescens | 34 | 8.6 |
| ISLxx3 | IS21 | Leifsonia xyli | 34 | 8.6 | |
| ISMav1 | IS21 | - | Mycobacterium avium | 34 | 8.6 |
| ISH8E | IS4 | ISH8 | Halobacterium sp. | 34 | 8.6 |
| ISH4 | IS1595 | ISH4 | Halobacterium sp. | 34 | 8.6 |
| ISCg2 | IS30 | - | Corynebacterium glutamicum | 34 | 8.6 |
| IS493 | IS5 | ISL2 | Streptomyces lividans | 34 | 8.6 |
| IS219 | IS1380 | - | Mycobacterium fortuitum | 34 | 8.6 |
| IS1612 | IS21 | - | Mycobacterium avium | 34 | 8.6 |
| IS1166 | IS256 | - | Rhodococcus sp. | 34 | 8.6 |
| IS1106 | IS5 | IS5 | Neisseria meningitidis | 34 | 8.6 |
| IS1016V3 | IS1595 | IS1016 | Haemophilus influenzae | 34 | 8.6 |
>ISTesp2
Length = 1397
Score = 91.7 bits (46), Expect = 4e-17
Identities = 67/74 (90%)
Strand = Plus / Plus
Query: 4 gccatgctcagcctcggcggtcaccgccccgtcctgcccggccggaactgacccacggat 63
|||||||||| ||||||||| ||||| |||||||| || |||||||| ||||||||||||
Sbjct: 1324 gccatgctcaacctcggcggccaccgacccgtcctcccaggccggaaatgacccacggat 1383
Query: 64 cagtcagtagagcc 77
||||||| ||||||
Sbjct: 1384 cagtcaggagagcc 1397
>IS1557
Length = 1509
Score = 44.1 bits (22), Expect = 0.009
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 54 acccacggatcagtcagtagagcccg 79
|||||| |||||||||||||||||||
Sbjct: 1462 acccacagatcagtcagtagagcccg 1487
>ISPla1
Length = 1132
Score = 40.1 bits (20), Expect = 0.14
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 17686 tgccgcagcgcctgggcgcg 17705
||||||||||||||||||||
Sbjct: 546 tgccgcagcgcctgggcgcg 527
>ISH22
Length = 1700
Score = 40.1 bits (20), Expect = 0.14
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 1093 gcgtcgttgtactcctcggtgacctcgc 1120
|||||| ||||||||||| |||||||||
Sbjct: 511 gcgtcgatgtactcctcgatgacctcgc 484
Score = 34.2 bits (17), Expect = 8.6
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 10297 ttcttcgagccggtcgc 10313
|||||||||||||||||
Sbjct: 257 ttcttcgagccggtcgc 241
>ISAzo26
Length = 2604
Score = 38.2 bits (19), Expect = 0.55
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 23268 gcgtcttcggcgcggtgctcgcc 23290
||||| |||||||||||||||||
Sbjct: 2323 gcgtcgtcggcgcggtgctcgcc 2345
>ISSsp5
Length = 2501
Score = 38.2 bits (19), Expect = 0.55
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 6092 cgagacggcgcgcggcgagtggatcga 6118
||||| ||||||| |||||||||||||
Sbjct: 1886 cgagatggcgcgctgcgagtggatcga 1912
>IS1088
Length = 1103
Score = 38.2 bits (19), Expect = 0.55
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 7033 agcgagatggccgagcacc 7051
|||||||||||||||||||
Sbjct: 786 agcgagatggccgagcacc 804
>ISLxx2
Length = 1427
Score = 38.2 bits (19), Expect = 0.55
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 13953 ccggtcgcggcgacgaccgcggcgacg 13979
|||||| || |||||||||||||||||
Sbjct: 404 ccggtctcgtcgacgaccgcggcgacg 378
>ISSme3
Length = 3149
Score = 38.2 bits (19), Expect = 0.55
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 21434 ggtgttctgtgacgggacgccgc 21456
|||||||||||||| ||||||||
Sbjct: 1664 ggtgttctgtgacgagacgccgc 1686
>ISHez2
Length = 1621
Score = 36.2 bits (18), Expect = 2.2
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 1846 atccccacggcgcgtccg 1863
||||||||||||||||||
Sbjct: 666 atccccacggcgcgtccg 649
>ISMgi5
Length = 1470
Score = 36.2 bits (18), Expect = 2.2
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 12500 tgatgccgcccacgccga 12517
||||||||||||||||||
Sbjct: 987 tgatgccgcccacgccga 1004
>ISAzs5
Length = 1333
Score = 36.2 bits (18), Expect = 2.2
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 7065 ccaggaggccgtcgagga 7082
||||||||||||||||||
Sbjct: 538 ccaggaggccgtcgagga 555
>ISAmi2
Length = 942
Score = 36.2 bits (18), Expect = 2.2
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 12753 ggcggcggcggtgtcgtcggtg 12774
||||||||||||||||| ||||
Sbjct: 630 ggcggcggcggtgtcgtgggtg 609
>ISMtsp20
Length = 926
Score = 36.2 bits (18), Expect = 2.2
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 19711 gccagcccgacggccggt 19728
||||||||||||||||||
Sbjct: 400 gccagcccgacggccggt 417
>ISAar34
Length = 1438
Score = 36.2 bits (18), Expect = 2.2
Identities = 24/26 (92%)
Strand = Plus / Plus
Query: 52 tgacccacggatcagtcagtagagcc 77
||||||||||| |||||||||||||
Sbjct: 1413 tgacccacggaagagtcagtagagcc 1438
>ISBuce1
Length = 1339
Score = 36.2 bits (18), Expect = 2.2
Identities = 24/26 (92%)
Strand = Plus / Minus
Query: 24085 ccctgctcgatgagctcgggcttgcg 24110
|||||||||||||||| | |||||||
Sbjct: 1045 ccctgctcgatgagcttgcgcttgcg 1020
>ISTha2
Length = 1268
Score = 36.2 bits (18), Expect = 2.2
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 8853 cccgccgacgccgaccgcatcg 8874
|||||||||||||| |||||||
Sbjct: 986 cccgccgacgccgagcgcatcg 1007
Score = 34.2 bits (17), Expect = 8.6
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 14868 ggcatgcgcgccacgac 14884
|||||||||||||||||
Sbjct: 189 ggcatgcgcgccacgac 205
>ISThsp12
Length = 2004
Score = 36.2 bits (18), Expect = 2.2
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 17840 aggcaccccagcacatcg 17857
||||||||||||||||||
Sbjct: 508 aggcaccccagcacatcg 491
>ISBj5_B
Length = 1524
Score = 36.2 bits (18), Expect = 2.2
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 5531 ccgctcgcagcagcagcg 5548
||||||||||||||||||
Sbjct: 925 ccgctcgcagcagcagcg 942
>ISCARN14
Length = 1226
Score = 36.2 bits (18), Expect = 2.2
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 3593 ctgcgcgaggccggcctcgagc 3614
||||||||||||||| ||||||
Sbjct: 256 ctgcgcgaggccggcatcgagc 277
>ISLxx6
Length = 919
Score = 36.2 bits (18), Expect = 2.2
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 24086 cctgctcgatgagctcgg 24103
||||||||||||||||||
Sbjct: 337 cctgctcgatgagctcgg 354
>ISRme12
Length = 1454
Score = 36.2 bits (18), Expect = 2.2
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 22518 tgctcggccagcacccgc 22535
||||||||||||||||||
Sbjct: 1183 tgctcggccagcacccgc 1166
>ISNha2
Length = 1455
Score = 36.2 bits (18), Expect = 2.2
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 11122 gccgcttgcgcggacggccccg 11143
|||||||||| |||||||||||
Sbjct: 848 gccgcttgcggggacggccccg 827
>IS1492
Length = 1467
Score = 36.2 bits (18), Expect = 2.2
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 14455 gcaccatgatgccgcctcgcga 14476
||||| ||||||||||||||||
Sbjct: 61 gcaccttgatgccgcctcgcga 40
>ISXc6
Length = 1500
Score = 36.2 bits (18), Expect = 2.2
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 22510 gctccagctgctcggcca 22527
||||||||||||||||||
Sbjct: 1099 gctccagctgctcggcca 1082
>ISSco3
Length = 1101
Score = 36.2 bits (18), Expect = 2.2
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 12872 caccggtgacggtctcggcgag 12893
|||||||||||||| |||||||
Sbjct: 702 caccggtgacggtcacggcgag 681
>IS900
Length = 1451
Score = 36.2 bits (18), Expect = 2.2
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 17046 ggcggcgggccagggcga 17063
||||||||||||||||||
Sbjct: 1361 ggcggcgggccagggcga 1344
>IS468A
Length = 1097
Score = 36.2 bits (18), Expect = 2.2
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 12872 caccggtgacggtctcggcgag 12893
|||||||||||||| |||||||
Sbjct: 700 caccggtgacggtcacggcgag 679
>IS1492a
Length = 1468
Score = 36.2 bits (18), Expect = 2.2
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 14455 gcaccatgatgccgcctcgcga 14476
||||| ||||||||||||||||
Sbjct: 62 gcaccttgatgccgcctcgcga 41
>IS1478
Length = 1207
Score = 36.2 bits (18), Expect = 2.2
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 22510 gctccagctgctcggcca 22527
||||||||||||||||||
Sbjct: 805 gctccagctgctcggcca 788
>TnXo19
Length = 18767
Score = 34.2 bits (17), Expect = 8.6
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 11166 gcgccgtcgacgatcag 11182
|||||||||||||||||
Sbjct: 4769 gcgccgtcgacgatcag 4753
>TnAs3
Length = 18735
Score = 34.2 bits (17), Expect = 8.6
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 24849 gcgcgccgccggtggcgacca 24869
|||||| ||||||||||||||
Sbjct: 2790 gcgcgcggccggtggcgacca 2770
Score = 34.2 bits (17), Expect = 8.6
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 6857 cccggcagcaggcccagggca 6877
|||||||||||||| ||||||
Sbjct: 12340 cccggcagcaggccgagggca 12320
>ISAeme14
Length = 1425
Score = 34.2 bits (17), Expect = 8.6
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 11901 gagctgcgccgtcagcg 11917
|||||||||||||||||
Sbjct: 627 gagctgcgccgtcagcg 643
>ISHas1
Length = 1955
Score = 34.2 bits (17), Expect = 8.6
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 17752 gacgcccacctcgacat 17768
|||||||||||||||||
Sbjct: 1052 gacgcccacctcgacat 1068
>ISMpo4
Length = 1767
Score = 34.2 bits (17), Expect = 8.6
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 15258 gaaggcacgccggacga 15274
|||||||||||||||||
Sbjct: 466 gaaggcacgccggacga 482
>ISMno16
Length = 1404
Score = 34.2 bits (17), Expect = 8.6
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 15773 cggccgcatcgaccccg 15789
|||||||||||||||||
Sbjct: 153 cggccgcatcgaccccg 137
>ISHarch10
Length = 1430
Score = 34.2 bits (17), Expect = 8.6
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 5408 caagggcgaggcgaagc 5424
|||||||||||||||||
Sbjct: 33 caagggcgaggcgaagc 49
>ISHma15
Length = 1702
Score = 34.2 bits (17), Expect = 8.6
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 1057 gccttctcgtcggccag 1073
|||||||||||||||||
Sbjct: 936 gccttctcgtcggccag 920
>ISHti1
Length = 2131
Score = 34.2 bits (17), Expect = 8.6
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 17752 gacgcccacctcgacat 17768
|||||||||||||||||
Sbjct: 1117 gacgcccacctcgacat 1133
>ISNma17
Length = 1585
Score = 34.2 bits (17), Expect = 8.6
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 11564 ggttgcggtggaaggtg 11580
|||||||||||||||||
Sbjct: 704 ggttgcggtggaaggtg 688
>ISKpn25
Length = 8154
Score = 34.2 bits (17), Expect = 8.6
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 1310 tggtggtcacgatccag 1326
|||||||||||||||||
Sbjct: 4703 tggtggtcacgatccag 4719
>ISHmu3
Length = 2029
Score = 34.2 bits (17), Expect = 8.6
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 17752 gacgcccacctcgacat 17768
|||||||||||||||||
Sbjct: 1126 gacgcccacctcgacat 1142
>ISH34
Length = 1853
Score = 34.2 bits (17), Expect = 8.6
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 10229 tcggcggggtcggcttc 10245
|||||||||||||||||
Sbjct: 802 tcggcggggtcggcttc 786
>ISAra2
Length = 2535
Score = 34.2 bits (17), Expect = 8.6
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 21271 tcgaagccaccgtgaac 21287
|||||||||||||||||
Sbjct: 2311 tcgaagccaccgtgaac 2327
>ISFsp17
Length = 1693
Score = 34.2 bits (17), Expect = 8.6
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 12424 acgagctcgacggcgag 12440
|||||||||||||||||
Sbjct: 657 acgagctcgacggcgag 641
Score = 34.2 bits (17), Expect = 8.6
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 12207 gagctcgtccggagcct 12223
|||||||||||||||||
Sbjct: 650 gagctcgtccggagcct 666
>ISHoc2
Length = 1715
Score = 34.2 bits (17), Expect = 8.6
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 9287 gcccggcaccgaagccg 9303
|||||||||||||||||
Sbjct: 1198 gcccggcaccgaagccg 1214
>ISAzs27
Length = 1270
Score = 34.2 bits (17), Expect = 8.6
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 13358 ggccgtcgcccggcgtc 13374
|||||||||||||||||
Sbjct: 519 ggccgtcgcccggcgtc 535
>ISAzs24
Length = 1325
Score = 34.2 bits (17), Expect = 8.6
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 22189 cacgcggcgcagtgggctgcg 22209
|||||| ||||||||||||||
Sbjct: 135 cacgcgtcgcagtgggctgcg 155
>ISNmo4
Length = 1176
Score = 34.2 bits (17), Expect = 8.6
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 24410 cgggccggcgtggccgc 24426
|||||||||||||||||
Sbjct: 208 cgggccggcgtggccgc 224
>ISRhosp9
Length = 944
Score = 34.2 bits (17), Expect = 8.6
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 16099 gcgctcgggcacgtcga 16115
|||||||||||||||||
Sbjct: 170 gcgctcgggcacgtcga 154
>ISFsp13
Length = 1724
Score = 34.2 bits (17), Expect = 8.6
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 20748 ggtgcgggtccgcgccc 20764
|||||||||||||||||
Sbjct: 690 ggtgcgggtccgcgccc 706
>ISMno10
Length = 1749
Score = 34.2 bits (17), Expect = 8.6
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 1325 aggcggtccgggcgcgg 1341
|||||||||||||||||
Sbjct: 309 aggcggtccgggcgcgg 325
Score = 34.2 bits (17), Expect = 8.6
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 12142 tggccgtgctgcgccgg 12158
|||||||||||||||||
Sbjct: 795 tggccgtgctgcgccgg 811
>ISMtsp8
Length = 2371
Score = 34.2 bits (17), Expect = 8.6
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 17851 cacatcgccgccttcca 17867
|||||||||||||||||
Sbjct: 664 cacatcgccgccttcca 680
>ISPfr16
Length = 1234
Score = 34.2 bits (17), Expect = 8.6
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 10866 ccggctgctcgaggagg 10882
|||||||||||||||||
Sbjct: 468 ccggctgctcgaggagg 484
>ISArsp6
Length = 26712
Score = 34.2 bits (17), Expect = 8.6
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 23958 gtggccacgctttcggtggcc 23978
||||||| |||||||||||||
Sbjct: 24575 gtggccatgctttcggtggcc 24555
>ISMch1
Length = 1294
Score = 34.2 bits (17), Expect = 8.6
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 20314 cgcgaccgaggcggcga 20330
|||||||||||||||||
Sbjct: 237 cgcgaccgaggcggcga 253
>ISMav8
Length = 2064
Score = 34.2 bits (17), Expect = 8.6
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 227 gggactgcccgagctgc 243
|||||||||||||||||
Sbjct: 838 gggactgcccgagctgc 854
>ISMav7
Length = 1691
Score = 34.2 bits (17), Expect = 8.6
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 5080 cggccgggtcgcgggtg 5096
|||||||||||||||||
Sbjct: 135 cggccgggtcgcgggtg 151
>ISMsm11
Length = 1658
Score = 34.2 bits (17), Expect = 8.6
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 17012 acctgctgcgcggcgccggcg 17032
|||||||||||| ||||||||
Sbjct: 1306 acctgctgcgcgccgccggcg 1326
>ISMyma7
Length = 1694
Score = 34.2 bits (17), Expect = 8.6
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 22179 gccggccggccacgcgg 22195
|||||||||||||||||
Sbjct: 1049 gccggccggccacgcgg 1033
>ISMgi1
Length = 1614
Score = 34.2 bits (17), Expect = 8.6
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 13808 cgggtcatcgctcgccg 13824
|||||||||||||||||
Sbjct: 1024 cgggtcatcgctcgccg 1040
>ISCgl4
Length = 1653
Score = 34.2 bits (17), Expect = 8.6
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 9101 cggcctgcaccccgcgg 9117
|||||||||||||||||
Sbjct: 704 cggcctgcaccccgcgg 688
>ISRjo1
Length = 1967
Score = 34.2 bits (17), Expect = 8.6
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 16533 tcgccgcgaagaccccg 16549
|||||||||||||||||
Sbjct: 634 tcgccgcgaagaccccg 650
>ISDre3
Length = 1834
Score = 34.2 bits (17), Expect = 8.6
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 20711 catatgagaaaaccgca 20727
|||||||||||||||||
Sbjct: 490 catatgagaaaaccgca 474
>ISAnsp12
Length = 2926
Score = 34.2 bits (17), Expect = 8.6
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 2836 cgaagccgcccttgtcc 2852
|||||||||||||||||
Sbjct: 659 cgaagccgcccttgtcc 643
>ISMdi27
Length = 2476
Score = 34.2 bits (17), Expect = 8.6
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 24548 cggtgcgctcgcgctcc 24564
|||||||||||||||||
Sbjct: 977 cggtgcgctcgcgctcc 961
>ISMdi18
Length = 3479
Score = 34.2 bits (17), Expect = 8.6
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 16996 gctcgcgctgactccga 17012
|||||||||||||||||
Sbjct: 2430 gctcgcgctgactccga 2446
>ISMex39
Length = 2456
Score = 34.2 bits (17), Expect = 8.6
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 24548 cggtgcgctcgcgctcc 24564
|||||||||||||||||
Sbjct: 961 cggtgcgctcgcgctcc 945
>ISMdi28
Length = 1410
Score = 34.2 bits (17), Expect = 8.6
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 24116 ggtgctggtgctcgacg 24132
|||||||||||||||||
Sbjct: 339 ggtgctggtgctcgacg 355
>ISStma8
Length = 1224
Score = 34.2 bits (17), Expect = 8.6
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 17712 caaggctgcagcggctg 17728
|||||||||||||||||
Sbjct: 558 caaggctgcagcggctg 542
>ISCth12
Length = 2497
Score = 34.2 bits (17), Expect = 8.6
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 19948 ggctacgtccccctcga 19964
|||||||||||||||||
Sbjct: 2167 ggctacgtccccctcga 2183
>ISMex22
Length = 3864
Score = 34.2 bits (17), Expect = 8.6
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 19797 cggccgcgacctgcgcc 19813
|||||||||||||||||
Sbjct: 485 cggccgcgacctgcgcc 469
Score = 34.2 bits (17), Expect = 8.6
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 3599 gaggccggcctcgagcccggg 3619
||||| |||||||||||||||
Sbjct: 536 gaggcaggcctcgagcccggg 556
Score = 34.2 bits (17), Expect = 8.6
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 2412 ggcctgggccgccgcgg 2428
|||||||||||||||||
Sbjct: 1956 ggcctgggccgccgcgg 1940
>ISRce1
Length = 1267
Score = 34.2 bits (17), Expect = 8.6
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 14951 cgccatcgtccgcgtcc 14967
|||||||||||||||||
Sbjct: 904 cgccatcgtccgcgtcc 920
>ISAzo37
Length = 843
Score = 34.2 bits (17), Expect = 8.6
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 22547 ctgctcgaactgctcat 22563
|||||||||||||||||
Sbjct: 90 ctgctcgaactgctcat 74
>ISAzo18
Length = 1471
Score = 34.2 bits (17), Expect = 8.6
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 14129 gagcgcggccaccgcca 14145
|||||||||||||||||
Sbjct: 156 gagcgcggccaccgcca 140
>ISCARN68
Length = 1419
Score = 34.2 bits (17), Expect = 8.6
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 9581 ggccatcgccgaagccg 9597
|||||||||||||||||
Sbjct: 1284 ggccatcgccgaagccg 1300
>ISRhsp5
Length = 2528
Score = 34.2 bits (17), Expect = 8.6
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 10687 ccggtcgcgggcctcctcgac 10707
|||| ||||||||||||||||
Sbjct: 1041 ccgggcgcgggcctcctcgac 1021
>ISAli20
Length = 3828
Score = 34.2 bits (17), Expect = 8.6
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 10408 gcggtcgagctgctcaaggag 10428
||||||||| |||||||||||
Sbjct: 2047 gcggtcgagttgctcaaggag 2067
>ISGob4
Length = 1576
Score = 34.2 bits (17), Expect = 8.6
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 2833 cgtcgaagccgcccttgtccg 2853
||||||||||||||| |||||
Sbjct: 252 cgtcgaagccgccctcgtccg 272
>ISAli1
Length = 933
Score = 34.2 bits (17), Expect = 8.6
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 19738 gacggccgcgaacggtc 19754
|||||||||||||||||
Sbjct: 200 gacggccgcgaacggtc 216
>ISGob1
Length = 1575
Score = 34.2 bits (17), Expect = 8.6
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 2833 cgtcgaagccgcccttgtccg 2853
||||||||||||||| |||||
Sbjct: 251 cgtcgaagccgccctcgtccg 271
>ISAau4
Length = 3898
Score = 34.2 bits (17), Expect = 8.6
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 12750 gacggcggcggcggtgt 12766
|||||||||||||||||
Sbjct: 2984 gacggcggcggcggtgt 2968
>ISAzca1
Length = 4520
Score = 34.2 bits (17), Expect = 8.6
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 22094 ccagccgcaagctgccg 22110
|||||||||||||||||
Sbjct: 1561 ccagccgcaagctgccg 1577
>ISSmu5
Length = 951
Score = 34.2 bits (17), Expect = 8.6
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 9613 tcggccacctgacgatc 9629
|||||||||||||||||
Sbjct: 638 tcggccacctgacgatc 622
>ISDge17
Length = 1071
Score = 34.2 bits (17), Expect = 8.6
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 15193 tcaccacgagcggccag 15209
|||||||||||||||||
Sbjct: 672 tcaccacgagcggccag 688
>IS1553
Length = 1406
Score = 34.2 bits (17), Expect = 8.6
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 1483 acagggcagactgtggc 1499
|||||||||||||||||
Sbjct: 149 acagggcagactgtggc 133
>ISSpu5
Length = 2556
Score = 34.2 bits (17), Expect = 8.6
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 3539 gccgaggtcacctggagccag 3559
||||||| |||||||||||||
Sbjct: 703 gccgaggccacctggagccag 723
>ISJsp2
Length = 1045
Score = 34.2 bits (17), Expect = 8.6
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 9613 tcggccacctgacgatc 9629
|||||||||||||||||
Sbjct: 918 tcggccacctgacgatc 902
>ISChy4
Length = 2172
Score = 34.2 bits (17), Expect = 8.6
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 5028 tccctgccgtatgccgc 5044
|||||||||||||||||
Sbjct: 422 tccctgccgtatgccgc 438
>ISAcr2
Length = 892
Score = 34.2 bits (17), Expect = 8.6
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 7862 cctcgacgagctggcgg 7878
|||||||||||||||||
Sbjct: 272 cctcgacgagctggcgg 288
>ISMxa2
Length = 1244
Score = 34.2 bits (17), Expect = 8.6
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 7772 agtgcctggccatcgac 7788
|||||||||||||||||
Sbjct: 773 agtgcctggccatcgac 789
>ISRsp6
Length = 1277
Score = 34.2 bits (17), Expect = 8.6
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 23607 tcgagcgccgcgacatc 23623
|||||||||||||||||
Sbjct: 1155 tcgagcgccgcgacatc 1171
>ISPepr3
Length = 1337
Score = 34.2 bits (17), Expect = 8.6
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 21356 cgccgatttcgcctttgtcga 21376
||||| |||||||||||||||
Sbjct: 728 cgccggtttcgcctttgtcga 708
>ISSpo3
Length = 1947
Score = 34.2 bits (17), Expect = 8.6
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 9989 gcgcgtcacgtctgccg 10005
|||||||||||||||||
Sbjct: 157 gcgcgtcacgtctgccg 173
>ISXac2
Length = 1195
Score = 34.2 bits (17), Expect = 8.6
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 23997 catcagctcggccacgt 24013
|||||||||||||||||
Sbjct: 165 catcagctcggccacgt 181
>ISPlu9
Length = 1492
Score = 34.2 bits (17), Expect = 8.6
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 9581 ggccatcgccgaagccg 9597
|||||||||||||||||
Sbjct: 302 ggccatcgccgaagccg 318
>ISLxx3
Length = 2637
Score = 34.2 bits (17), Expect = 8.6
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 1897 cccgtgccgccgcgggagctc 1917
|||||||||||||| ||||||
Sbjct: 214 cccgtgccgccgcgagagctc 194
>ISMav1
Length = 2536
Score = 34.2 bits (17), Expect = 8.6
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 17546 cggcggcaccgctggct 17562
|||||||||||||||||
Sbjct: 1708 cggcggcaccgctggct 1724
>ISH8E
Length = 1403
Score = 34.2 bits (17), Expect = 8.6
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 4829 gagacgacgctcgacgaggtc 4849
||||| |||||||||||||||
Sbjct: 385 gagaccacgctcgacgaggtc 365
>ISH4
Length = 1004
Score = 34.2 bits (17), Expect = 8.6
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 232 tgcccgagctgccgtgc 248
|||||||||||||||||
Sbjct: 173 tgcccgagctgccgtgc 189
>ISCg2
Length = 1636
Score = 34.2 bits (17), Expect = 8.6
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 6639 caacgtcaaccggctcg 6655
|||||||||||||||||
Sbjct: 1245 caacgtcaaccggctcg 1229
>IS493
Length = 1643
Score = 34.2 bits (17), Expect = 8.6
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 6614 agcgcacccgtcaggac 6630
|||||||||||||||||
Sbjct: 686 agcgcacccgtcaggac 702
>IS219
Length = 1654
Score = 34.2 bits (17), Expect = 8.6
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 17012 acctgctgcgcggcgccggcg 17032
|||||||||||| ||||||||
Sbjct: 1303 acctgctgcgcgccgccggcg 1323
>IS1612
Length = 2532
Score = 34.2 bits (17), Expect = 8.6
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 17546 cggcggcaccgctggct 17562
|||||||||||||||||
Sbjct: 1704 cggcggcaccgctggct 1720
>IS1166
Length = 1469
Score = 34.2 bits (17), Expect = 8.6
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 2494 ggtcgttgaccgcggtg 2510
|||||||||||||||||
Sbjct: 397 ggtcgttgaccgcggtg 381
>IS1106
Length = 1137
Score = 34.2 bits (17), Expect = 8.6
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 11541 tcagaccgccggcagca 11557
|||||||||||||||||
Sbjct: 386 tcagaccgccggcagca 402
>IS1016V3
Length = 711
Score = 34.2 bits (17), Expect = 8.6
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 22664 tcctgctgcgcctcgac 22680
|||||||||||||||||
Sbjct: 301 tcctgctgcgcctcgac 285
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_31_length_16842_cov_103.309_ID_5230
(16,842 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISApr11 | IS1380 | Alpha proteobacterium | 40 | 0.092 | |
| ISFsp2 | IS5 | ISL2 | Frankia sp. | 38 | 0.36 |
| ISAcl2 | IS3 | IS3 | Arthrobacter chlorophenolicus | 38 | 0.36 |
| ISAnsp5 | IS21 | Anaeromyxobacter sp. | 38 | 0.36 | |
| ISAnsp3 | IS66 | Anaeromyxobacter sp. | 38 | 0.36 | |
| ISRhru2 | IS66 | ISBst12 | Rhodospirillum rubrum | 38 | 0.36 |
| ISRhosp8 | IS110 | Rhodococcus sp. | 38 | 0.36 | |
| ISTco5 | ISNCY | ISDol1 | Thermobacillus composti | 36 | 1.4 |
| ISHez2 | IS200/IS605 | IS1341 | Halorubrum ezzemoulense | 36 | 1.4 |
| ISBsa1 | IS256 | Blastococcus saxobsidens | 36 | 1.4 | |
| ISSoEn3 | IS21 | Primary endosymbiont of Sitophilus oryzae | 36 | 1.4 | |
| ISAzs23 | IS3 | IS3 | Azospirillum sp. | 36 | 1.4 |
| ISAau5 | ISNCY | Arthrobacter aurescens | 36 | 1.4 | |
| ISSav7 | IS481 | Streptomyces avermitilis | 36 | 1.4 | |
| ISSpu14 | IS5 | IS903 | Shewanella putrefaciens | 36 | 1.4 |
| IS1557 | ISL3 | Mycobacterium tuberculosis | 36 | 1.4 | |
| ISAzo4 | IS21 | Azoarcus sp. | 36 | 1.4 | |
| ISTsu1 | IS256 | Thermaerobacter subterraneus | 34 | 5.7 | |
| TnXo19 | Tn3 | Xanthomonas oryzae | 34 | 5.7 | |
| ISHko3 | IS200/IS605 | Halorubrum kocurii | 34 | 5.7 | |
| ISMex44 | IS200/IS605 | IS1341 | Methylobacterium extorquens | 34 | 5.7 |
| ISHaru1 | IS200/IS605 | IS1341 | Halobellus rufus | 34 | 5.7 |
| ISHje2 | IS200/IS605 | IS605 | Halalkalicoccus jeotgali | 34 | 5.7 |
| ISHtu6 | IS200/IS605 | IS1341 | Haloterrigena turkmenica | 34 | 5.7 |
| ISHru2 | IS200/IS605 | IS605 | Halovivax ruber | 34 | 5.7 |
| ISHla15 | IS200/IS605 | Halorubrum lacusprofundi | 34 | 5.7 | |
| ISMyma9 | IS21 | Mycobacterium marinum | 34 | 5.7 | |
| ISHbo2 | IS200/IS605 | IS1341 | Halogeometricum borinquense | 34 | 5.7 |
| ISHmu6 | IS200/IS605 | Halomicrobium mukohataei | 34 | 5.7 | |
| ISMtu1 | IS256 | Mycobacterium tusciae | 34 | 5.7 | |
| ISNmo4 | IS5 | IS5 | Nitrococcus mobilis | 34 | 5.7 |
| ISStau7 | IS1182 | Stigmatella aurantiaca | 34 | 5.7 | |
| ISPkr1 | IS21 | Paracoccus koreensis | 34 | 5.7 | |
| ISRssp11 | IS5 | Roseovarius sp. | 34 | 5.7 | |
| ISMno23 | IS91 | Methylobacterium nodulans | 34 | 5.7 | |
| ISMno30 | ISL3 | Methylobacterium nodulans | 34 | 5.7 | |
| ISMno13 | IS66 | Methylobacterium nodulans | 34 | 5.7 | |
| IS1087B | IS3 | IS2 | Ralstonia metallidurans | 34 | 5.7 |
| ISArsp6 | Tn3 | Arthrobacter sp. | 34 | 5.7 | |
| ISMsm12 | IS1380 | Mycobacterium smegmatis | 34 | 5.7 | |
| ISMva3 | IS1380 | Mycobacterium vanbaalenii | 34 | 5.7 | |
| ISMsm10 | IS1380 | Mycobacterium smegmatis | 34 | 5.7 | |
| ISGosp1 | IS1380 | Gordonia sp. | 34 | 5.7 | |
| ISRsp7 | IS1380 | Rhizobium sp. | 34 | 5.7 | |
| ISMex25 | IS6 | Methylobacterium extorquens | 34 | 5.7 | |
| ISMdi12 | IS110 | IS1111 | Methylobacterium dichloromethanicum | 34 | 5.7 |
| ISMdi27 | IS21 | Methylobacterium dichloromethanicum | 34 | 5.7 | |
| ISMex43 | IS200/IS605 | IS1341 | Methylobacterium extorquens | 34 | 5.7 |
| IS684 | IS66 | Pseudomonas syringae | 34 | 5.7 | |
| ISMex37 | IS3 | IS150 | Methylobacterium extorquens | 34 | 5.7 |
| ISMex39 | IS21 | Methylobacterium extorquens | 34 | 5.7 | |
| ISMex8 | IS21 | Methylobacterium extorquens | 34 | 5.7 | |
| ISCARN74 | IS5 | IS5 | Metagenomic data from CARNOULES | 34 | 5.7 |
| ISThsp9 | Tn3 | Thiomonas sp. | 34 | 5.7 | |
| ISFpe1 | IS66 | Fulvimarina pelagi | 34 | 5.7 | |
| ISMno4 | IS66 | ISBst12 | Methylobacterium nodulans | 34 | 5.7 |
| ISBad1 | IS21 | Bifidobacterium adolescentis | 34 | 5.7 | |
| ISSce1 | IS1 | ISMhu11 | Sorangium cellulosum | 34 | 5.7 |
| ISDra7 | IS4 | ISPepr1 | Deinococcus radiodurans | 34 | 5.7 |
| ISAzvi5 | IS4 | IS10 | Azotobacter vinelandii | 34 | 5.7 |
| ISH20 | ISH3 | Haloarcula marismortui | 34 | 5.7 | |
| ISHma12 | IS200/IS605 | Haloarcula marismortui | 34 | 5.7 | |
| ISFsp3 | IS21 | Frankia sp. | 34 | 5.7 | |
| ISBfun1 | IS110 | IS1111 | Burkholderia fungorum | 34 | 5.7 |
| IS5075 | IS110 | IS1111 | Escherichia coli | 34 | 5.7 |
| ISBlo2 | IS21 | Bifidobacterium longum | 34 | 5.7 | |
| ISMt2 | IS21 | - | Mycobacterium tuberculosis | 34 | 5.7 |
| ISJp4 | IS5 | IS427 | Ralstonia eutropha | 34 | 5.7 |
| ISBj1 | IS1380 | - | Bradyrhizobium japonicum | 34 | 5.7 |
| IS866 | IS66 | - | Agrobacterium tumefaciens | 34 | 5.7 |
| IS6100 | IS6 | - | Mycobacterium fortuitum | 34 | 5.7 |
| IS4321R | IS110 | IS1111 | Enterobacter aerogenes | 34 | 5.7 |
| IS220 | IS1380 | - | Mycobacterium fortuitum | 34 | 5.7 |
| IS2621 | IS4 | ISPepr1 | Deinococcus radiodurans | 34 | 5.7 |
| IS1087 | IS3 | IS2 | Ralstonia eutropha | 34 | 5.7 |
| IS1031A | IS5 | IS1031 | Acetobacter xylinum | 34 | 5.7 |
>ISApr11
Length = 1667
Score = 40.1 bits (20), Expect = 0.092
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 5006 cgggtcgagcacgacccgcccgccgtcg 5033
||||||||||||| |||||| |||||||
Sbjct: 747 cgggtcgagcacgtcccgccagccgtcg 720
>ISFsp2
Length = 1040
Score = 38.2 bits (19), Expect = 0.36
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1640 gacggcgcgcagcgcgttg 1658
|||||||||||||||||||
Sbjct: 841 gacggcgcgcagcgcgttg 823
>ISAcl2
Length = 1243
Score = 38.2 bits (19), Expect = 0.36
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 1354 ccgtggcgatgacctgcagggtg 1376
|||||||| ||||||||||||||
Sbjct: 388 ccgtggcggtgacctgcagggtg 410
>ISAnsp5
Length = 2192
Score = 38.2 bits (19), Expect = 0.36
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 10628 cgagctcgtcgatgacgag 10646
|||||||||||||||||||
Sbjct: 1868 cgagctcgtcgatgacgag 1850
Score = 34.2 bits (17), Expect = 5.7
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 9166 agagcagcgcgtcgagc 9182
|||||||||||||||||
Sbjct: 1439 agagcagcgcgtcgagc 1423
>ISAnsp3
Length = 2518
Score = 38.2 bits (19), Expect = 0.36
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 9173 cgcgtcgagcgcggcgcgc 9191
|||||||||||||||||||
Sbjct: 1966 cgcgtcgagcgcggcgcgc 1948
>ISRhru2
Length = 1443
Score = 38.2 bits (19), Expect = 0.36
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 6831 cgaccagggcgtcgaggcg 6849
|||||||||||||||||||
Sbjct: 1121 cgaccagggcgtcgaggcg 1103
>ISRhosp8
Length = 1439
Score = 38.2 bits (19), Expect = 0.36
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 8853 tcgagctcgtcgagggcctcgtc 8875
||||||||| |||||||||||||
Sbjct: 622 tcgagctcggcgagggcctcgtc 600
>ISTco5
Length = 1616
Score = 36.2 bits (18), Expect = 1.4
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 2891 cggcgacgaagtcgtcga 2908
||||||||||||||||||
Sbjct: 507 cggcgacgaagtcgtcga 524
>ISHez2
Length = 1621
Score = 36.2 bits (18), Expect = 1.4
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 7894 gaagtctcgtcgctttcg 7911
||||||||||||||||||
Sbjct: 1135 gaagtctcgtcgctttcg 1118
>ISBsa1
Length = 1464
Score = 36.2 bits (18), Expect = 1.4
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 9174 gcgtcgagcgcggcgcgc 9191
||||||||||||||||||
Sbjct: 1359 gcgtcgagcgcggcgcgc 1342
>ISSoEn3
Length = 2600
Score = 36.2 bits (18), Expect = 1.4
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 11261 aggcggtcgaggtcgacg 11278
||||||||||||||||||
Sbjct: 380 aggcggtcgaggtcgacg 363
>ISAzs23
Length = 1596
Score = 36.2 bits (18), Expect = 1.4
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 3148 gcacgggcgacgccgaca 3165
||||||||||||||||||
Sbjct: 628 gcacgggcgacgccgaca 611
>ISAau5
Length = 3989
Score = 36.2 bits (18), Expect = 1.4
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 9558 ctgcgtgccttctccgcg 9575
||||||||||||||||||
Sbjct: 1503 ctgcgtgccttctccgcg 1486
>ISSav7
Length = 2992
Score = 36.2 bits (18), Expect = 1.4
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 2322 gcaggccggtggcgctcagcag 2343
||||||||||||||| ||||||
Sbjct: 1399 gcaggccggtggcgcgcagcag 1378
>ISSpu14
Length = 1052
Score = 36.2 bits (18), Expect = 1.4
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 11318 aggagcggcgacgcacgt 11335
||||||||||||||||||
Sbjct: 498 aggagcggcgacgcacgt 515
>IS1557
Length = 1509
Score = 36.2 bits (18), Expect = 1.4
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 427 acggtggcctggctggcg 444
||||||||||||||||||
Sbjct: 489 acggtggcctggctggcg 506
>ISAzo4
Length = 2757
Score = 36.2 bits (18), Expect = 1.4
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 5721 cgtggctcgcctgcgcgc 5738
||||||||||||||||||
Sbjct: 2157 cgtggctcgcctgcgcgc 2174
Score = 36.2 bits (18), Expect = 1.4
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 16384 gacgcctcatgcagctcg 16401
||||||||||||||||||
Sbjct: 2277 gacgcctcatgcagctcg 2294
>ISTsu1
Length = 1315
Score = 34.2 bits (17), Expect = 5.7
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 15001 tgcagcgccgcgcgagc 15017
|||||||||||||||||
Sbjct: 1096 tgcagcgccgcgcgagc 1080
>TnXo19
Length = 18767
Score = 34.2 bits (17), Expect = 5.7
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 5470 acgctcggcgacctgct 5486
|||||||||||||||||
Sbjct: 3891 acgctcggcgacctgct 3875
>ISHko3
Length = 1862
Score = 34.2 bits (17), Expect = 5.7
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 9945 cgaaccactcgcccgtc 9961
|||||||||||||||||
Sbjct: 1104 cgaaccactcgcccgtc 1088
>ISMex44
Length = 1270
Score = 34.2 bits (17), Expect = 5.7
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 5905 ggcatcgggcggcagcg 5921
|||||||||||||||||
Sbjct: 549 ggcatcgggcggcagcg 533
>ISHaru1
Length = 1488
Score = 34.2 bits (17), Expect = 5.7
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 2781 cacctcgtcgccgggcg 2797
|||||||||||||||||
Sbjct: 738 cacctcgtcgccgggcg 722
>ISHje2
Length = 1837
Score = 34.2 bits (17), Expect = 5.7
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 9945 cgaaccactcgcccgtc 9961
|||||||||||||||||
Sbjct: 1082 cgaaccactcgcccgtc 1066
>ISHtu6
Length = 1516
Score = 34.2 bits (17), Expect = 5.7
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 9945 cgaaccactcgcccgtc 9961
|||||||||||||||||
Sbjct: 758 cgaaccactcgcccgtc 742
>ISHru2
Length = 1942
Score = 34.2 bits (17), Expect = 5.7
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 9945 cgaaccactcgcccgtc 9961
|||||||||||||||||
Sbjct: 1127 cgaaccactcgcccgtc 1111
>ISHla15
Length = 1835
Score = 34.2 bits (17), Expect = 5.7
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 9945 cgaaccactcgcccgtc 9961
|||||||||||||||||
Sbjct: 1080 cgaaccactcgcccgtc 1064
>ISMyma9
Length = 2162
Score = 34.2 bits (17), Expect = 5.7
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 5879 tcgaccgcatcgagcaccacg 5899
|||||||||||| ||||||||
Sbjct: 1981 tcgaccgcatcgtgcaccacg 2001
>ISHbo2
Length = 1671
Score = 34.2 bits (17), Expect = 5.7
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 6439 gccgtcgaagaactgct 6455
|||||||||||||||||
Sbjct: 398 gccgtcgaagaactgct 382
>ISHmu6
Length = 1889
Score = 34.2 bits (17), Expect = 5.7
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 9945 cgaaccactcgcccgtc 9961
|||||||||||||||||
Sbjct: 1134 cgaaccactcgcccgtc 1118
>ISMtu1
Length = 1474
Score = 34.2 bits (17), Expect = 5.7
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 2912 ggtcggcgaggaggcga 2928
|||||||||||||||||
Sbjct: 564 ggtcggcgaggaggcga 580
Score = 34.2 bits (17), Expect = 5.7
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 3235 tcgatgagctccatcgcccgg 3255
||||||| |||||||||||||
Sbjct: 1207 tcgatgatctccatcgcccgg 1227
>ISNmo4
Length = 1176
Score = 34.2 bits (17), Expect = 5.7
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 6321 gctcgacgagcacgtcgtgga 6341
||||| |||||||||||||||
Sbjct: 465 gctcggcgagcacgtcgtgga 445
>ISStau7
Length = 1716
Score = 34.2 bits (17), Expect = 5.7
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 1394 gaggaggagcggcatgg 1410
|||||||||||||||||
Sbjct: 94 gaggaggagcggcatgg 110
>ISPkr1
Length = 2469
Score = 34.2 bits (17), Expect = 5.7
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 5621 tgccggtcgccgttcgg 5637
|||||||||||||||||
Sbjct: 1380 tgccggtcgccgttcgg 1364
>ISRssp11
Length = 1356
Score = 34.2 bits (17), Expect = 5.7
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 3368 ggcgcagctcggcgacg 3384
|||||||||||||||||
Sbjct: 1004 ggcgcagctcggcgacg 988
>ISMno23
Length = 2271
Score = 34.2 bits (17), Expect = 5.7
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 1633 ggctcgggacggcgcgcagcg 1653
|||||| ||||||||||||||
Sbjct: 944 ggctcgcgacggcgcgcagcg 924
>ISMno30
Length = 1773
Score = 34.2 bits (17), Expect = 5.7
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 11264 cggtcgaggtcgacgag 11280
|||||||||||||||||
Sbjct: 591 cggtcgaggtcgacgag 575
>ISMno13
Length = 2459
Score = 34.2 bits (17), Expect = 5.7
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 1290 gcggccagcccgtcgat 1306
|||||||||||||||||
Sbjct: 587 gcggccagcccgtcgat 571
>IS1087B
Length = 1330
Score = 34.2 bits (17), Expect = 5.7
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 4173 gagcgcgatcggcacgtcggg 4193
||||||| |||||||||||||
Sbjct: 1185 gagcgcggtcggcacgtcggg 1165
>ISArsp6
Length = 26712
Score = 34.2 bits (17), Expect = 5.7
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 4617 gcgagctgcccgatcttcatc 4637
|||| ||||||||||||||||
Sbjct: 18882 gcgacctgcccgatcttcatc 18862
>ISMsm12
Length = 3256
Score = 34.2 bits (17), Expect = 5.7
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 8893 cgccggtgtcggggtcg 8909
|||||||||||||||||
Sbjct: 2587 cgccggtgtcggggtcg 2571
>ISMva3
Length = 1658
Score = 34.2 bits (17), Expect = 5.7
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 8893 cgccggtgtcggggtcg 8909
|||||||||||||||||
Sbjct: 990 cgccggtgtcggggtcg 974
>ISMsm10
Length = 1661
Score = 34.2 bits (17), Expect = 5.7
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 8893 cgccggtgtcggggtcg 8909
|||||||||||||||||
Sbjct: 991 cgccggtgtcggggtcg 975
>ISGosp1
Length = 1642
Score = 34.2 bits (17), Expect = 5.7
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 8893 cgccggtgtcggggtcg 8909
|||||||||||||||||
Sbjct: 979 cgccggtgtcggggtcg 963
>ISRsp7
Length = 2024
Score = 34.2 bits (17), Expect = 5.7
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 3685 tggtcgaccacagggagtcgc 3705
|||||||||||||| ||||||
Sbjct: 1166 tggtcgaccacaggaagtcgc 1146
>ISMex25
Length = 887
Score = 34.2 bits (17), Expect = 5.7
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 10803 cacctcgaccccgcgct 10819
|||||||||||||||||
Sbjct: 248 cacctcgaccccgcgct 232
>ISMdi12
Length = 1371
Score = 34.2 bits (17), Expect = 5.7
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 15360 cagatggtgagcccccg 15376
|||||||||||||||||
Sbjct: 64 cagatggtgagcccccg 48
>ISMdi27
Length = 2476
Score = 34.2 bits (17), Expect = 5.7
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 5474 tcggcgacctgctccag 5490
|||||||||||||||||
Sbjct: 1721 tcggcgacctgctccag 1737
>ISMex43
Length = 1250
Score = 34.2 bits (17), Expect = 5.7
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 5662 ggtcgcgaggccgcggt 5678
|||||||||||||||||
Sbjct: 338 ggtcgcgaggccgcggt 354
>IS684
Length = 2040
Score = 34.2 bits (17), Expect = 5.7
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 1290 gcggccagcccgtcgat 1306
|||||||||||||||||
Sbjct: 171 gcggccagcccgtcgat 155
>ISMex37
Length = 1510
Score = 34.2 bits (17), Expect = 5.7
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 2994 gatcgcctcgtcgatgt 3010
|||||||||||||||||
Sbjct: 247 gatcgcctcgtcgatgt 263
>ISMex39
Length = 2456
Score = 34.2 bits (17), Expect = 5.7
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 5474 tcggcgacctgctccag 5490
|||||||||||||||||
Sbjct: 1705 tcggcgacctgctccag 1721
>ISMex8
Length = 2597
Score = 34.2 bits (17), Expect = 5.7
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 2949 cagcacgccgccgacgc 2965
|||||||||||||||||
Sbjct: 49 cagcacgccgccgacgc 33
>ISCARN74
Length = 1203
Score = 34.2 bits (17), Expect = 5.7
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 6362 tcgacgagggcgcggcg 6378
|||||||||||||||||
Sbjct: 527 tcgacgagggcgcggcg 511
>ISThsp9
Length = 6215
Score = 34.2 bits (17), Expect = 5.7
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 4280 gcagccgggccacggcg 4296
|||||||||||||||||
Sbjct: 2653 gcagccgggccacggcg 2637
>ISFpe1
Length = 2489
Score = 34.2 bits (17), Expect = 5.7
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 940 ccggcattcgtgccggc 956
|||||||||||||||||
Sbjct: 333 ccggcattcgtgccggc 349
>ISMno4
Length = 1385
Score = 34.2 bits (17), Expect = 5.7
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 3308 tgtcgacgacggtgcgg 3324
|||||||||||||||||
Sbjct: 1298 tgtcgacgacggtgcgg 1282
>ISBad1
Length = 2525
Score = 34.2 bits (17), Expect = 5.7
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 5879 tcgaccgcatcgagcaccacg 5899
|||||||||||| ||||||||
Sbjct: 2339 tcgaccgcatcgtgcaccacg 2359
>ISSce1
Length = 4601
Score = 34.2 bits (17), Expect = 5.7
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 7102 gacgagcgagtcggggc 7118
|||||||||||||||||
Sbjct: 3657 gacgagcgagtcggggc 3673
>ISDra7
Length = 1322
Score = 34.2 bits (17), Expect = 5.7
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 12510 cgcggtcccgctgcgca 12526
|||||||||||||||||
Sbjct: 108 cgcggtcccgctgcgca 124
>ISAzvi5
Length = 1328
Score = 34.2 bits (17), Expect = 5.7
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 12928 ctggccagcaacctgcc 12944
|||||||||||||||||
Sbjct: 903 ctggccagcaacctgcc 919
>ISH20
Length = 1374
Score = 34.2 bits (17), Expect = 5.7
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 15761 acacttccagatcgacg 15777
|||||||||||||||||
Sbjct: 343 acacttccagatcgacg 359
Score = 34.2 bits (17), Expect = 5.7
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 6846 ggcggttcgccagctcg 6862
|||||||||||||||||
Sbjct: 512 ggcggttcgccagctcg 528
>ISHma12
Length = 1835
Score = 34.2 bits (17), Expect = 5.7
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 9945 cgaaccactcgcccgtc 9961
|||||||||||||||||
Sbjct: 1080 cgaaccactcgcccgtc 1064
>ISFsp3
Length = 2209
Score = 34.2 bits (17), Expect = 5.7
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 3498 gacggtgatccggccgg 3514
|||||||||||||||||
Sbjct: 354 gacggtgatccggccgg 370
>ISBfun1
Length = 1466
Score = 34.2 bits (17), Expect = 5.7
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 16366 gccagcgcgttgctcgc 16382
|||||||||||||||||
Sbjct: 783 gccagcgcgttgctcgc 799
>IS5075
Length = 1327
Score = 34.2 bits (17), Expect = 5.7
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 7245 gttggacgaagatgagg 7261
|||||||||||||||||
Sbjct: 673 gttggacgaagatgagg 689
>ISBlo2
Length = 2455
Score = 34.2 bits (17), Expect = 5.7
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 5879 tcgaccgcatcgagcaccacg 5899
|||||||||||| ||||||||
Sbjct: 2272 tcgaccgcatcgtgcaccacg 2292
>ISMt2
Length = 2645
Score = 34.2 bits (17), Expect = 5.7
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 1773 agccgcgccggcacgccgtcg 1793
|||||||||||||| ||||||
Sbjct: 811 agccgcgccggcaccccgtcg 791
>ISJp4
Length = 915
Score = 34.2 bits (17), Expect = 5.7
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 6611 cagcggcttcgcgagcg 6627
|||||||||||||||||
Sbjct: 673 cagcggcttcgcgagcg 689
>ISBj1
Length = 2071
Score = 34.2 bits (17), Expect = 5.7
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 13135 cggtcctcgacggcgcgtccg 13155
||||||| |||||||||||||
Sbjct: 1790 cggtccttgacggcgcgtccg 1810
Score = 34.2 bits (17), Expect = 5.7
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 13135 cggtcctcgacggcgcgtccg 13155
||||||| |||||||||||||
Sbjct: 1902 cggtccttgacggcgcgtccg 1922
>IS866
Length = 2716
Score = 34.2 bits (17), Expect = 5.7
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 3033 cttgccgaggtcggact 3049
|||||||||||||||||
Sbjct: 2294 cttgccgaggtcggact 2278
>IS6100
Length = 880
Score = 34.2 bits (17), Expect = 5.7
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 2737 ccgtcagcgccgagggc 2753
|||||||||||||||||
Sbjct: 782 ccgtcagcgccgagggc 766
>IS4321R
Length = 1326
Score = 34.2 bits (17), Expect = 5.7
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 7245 gttggacgaagatgagg 7261
|||||||||||||||||
Sbjct: 672 gttggacgaagatgagg 688
>IS220
Length = 3257
Score = 34.2 bits (17), Expect = 5.7
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 8893 cgccggtgtcggggtcg 8909
|||||||||||||||||
Sbjct: 2588 cgccggtgtcggggtcg 2572
>IS2621
Length = 1322
Score = 34.2 bits (17), Expect = 5.7
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 12510 cgcggtcccgctgcgca 12526
|||||||||||||||||
Sbjct: 108 cgcggtcccgctgcgca 124
>IS1087
Length = 1330
Score = 34.2 bits (17), Expect = 5.7
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 4173 gagcgcgatcggcacgtcggg 4193
||||||| |||||||||||||
Sbjct: 1189 gagcgcggtcggcacgtcggg 1169
>IS1031A
Length = 930
Score = 34.2 bits (17), Expect = 5.7
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 4406 cgagggcgaccgccccg 4422
|||||||||||||||||
Sbjct: 207 cgagggcgaccgccccg 191
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_32_length_16816_cov_91.4997_ID_5232
(16,816 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISPfr3 | ISL3 | Propionibacterium freudenreichii | 115 | 2e-24 | |
| ISPfr6 | ISL3 | Propionibacterium freudenreichii | 105 | 2e-21 | |
| ISAar30 | ISL3 | Arthrobacter arilaitensis | 101 | 3e-20 | |
| IS1096 | ISL3 | - | Mycobacterium smegmatis | 101 | 3e-20 |
| ISBli1 | ISL3 | - | Brevibacterium linens | 92 | 3e-17 |
| ISPfr8 | ISL3 | Propionibacterium freudenreichii | 90 | 1e-16 | |
| ISPfr4 | ISL3 | Propionibacterium freudenreichii | 84 | 7e-15 | |
| ISPfr2 | ISL3 | Propionibacterium freudenreichii | 80 | 1e-13 | |
| ISAar39 | ISL3 | Arthrobacter arilaitensis | 70 | 1e-10 | |
| ISPfr1 | ISL3 | Propionibacterium freudenreichii | 56 | 2e-06 | |
| ISAnsp5 | IS21 | Anaeromyxobacter sp. | 40 | 0.092 | |
| ISAsp11 | IS200/IS605 | IS1341 | Anabaena sp. | 38 | 0.36 |
| ISRel15 | IS66 | Rhizobium etli | 38 | 0.36 | |
| ISBj7_B | IS66 | Bradyrhizobium japonicum | 38 | 0.36 | |
| ISApr6 | IS66 | Alpha proteobacterium | 38 | 0.36 | |
| ISHne3 | IS110 | Hyphomonas neptunium | 38 | 0.36 | |
| ISAzs20 | IS66 | Azospirillum sp. | 36 | 1.4 | |
| ISPkr1 | IS21 | Paracoccus koreensis | 36 | 1.4 | |
| ISHwa4 | IS701 | Haloquadratum walsbyi | 36 | 1.4 | |
| ISNha8 | IS5 | Nitrobacter hamburgensis | 36 | 1.4 | |
| ISRpa8 | IS5 | IS5 | Rhodopseudomonas palustris | 36 | 1.4 |
| IS693 | IS66 | Rhizobium sp. | 36 | 1.4 | |
| IS692 | IS66 | Agrobacterium tumefaciens | 36 | 1.4 | |
| ISCARN24 | IS21 | Metagenomic data from CARNOULES | 36 | 1.4 | |
| ISBcen28 | IS21 | Burkholderia cenocepacia | 36 | 1.4 | |
| ISAli15 | IS66 | Azospirillum lipoferum | 36 | 1.4 | |
| IS1513 | IS30 | - | Corynebacterium striatum | 36 | 1.4 |
| TnXo19 | Tn3 | Xanthomonas oryzae | 34 | 5.7 | |
| TnAs1 | Tn3 | Aeromonas salmonicida | 34 | 5.7 | |
| ISBj12 | ISNCY | ISLbi1 | Bradyrhizobium japonicum | 34 | 5.7 |
| ISFsp17 | ISKra4 | ISKra4 | Frankia sp. | 34 | 5.7 |
| ISAod1 | IS256 | IS1249 | Actinomyces odontolyticus | 34 | 5.7 |
| ISAzs18 | IS66 | Azospirillum sp. | 34 | 5.7 | |
| ISAzs11 | ISAs1 | Azospirillum sp. | 34 | 5.7 | |
| ISRel24 | IS66 | Rhizobium etli | 34 | 5.7 | |
| ISPso1 | IS256 | Paracoccus solventivorans | 34 | 5.7 | |
| ISPfr16 | IS30 | Propionibacterium freudenreichii | 34 | 5.7 | |
| ISAar15 | ISL3 | Arthrobacter arilaitensis | 34 | 5.7 | |
| ISAar14 | ISL3 | Arthrobacter arilaitensis | 34 | 5.7 | |
| ISAar13 | ISL3 | Arthrobacter arilaitensis | 34 | 5.7 | |
| ISMex28 | IS5 | IS5 | Methylobacterium extorquens | 34 | 5.7 |
| ISMdi10 | IS110 | IS1111 | Methylobacterium dichloromethanicum | 34 | 5.7 |
| ISMdi7 | IS21 | Methylobacterium dichloromethanicum | 34 | 5.7 | |
| ISAnsp4 | IS21 | Anaeromyxobacter sp. | 34 | 5.7 | |
| ISSav7 | IS481 | Streptomyces avermitilis | 34 | 5.7 | |
| ISKpn12 | IS5 | IS427 | Klebsiella pneumoniae | 34 | 5.7 |
| ISApr5 | IS6 | Alpha proteobacterium | 34 | 5.7 | |
| ISRfsp1 | IS66 | ISBst12 | Roseiflexus sp. | 34 | 5.7 |
| ISMsm4 | ISL3 | Mycobacterium smegmatis | 34 | 5.7 | |
| ISMno1 | ISAs1 | Methylobacterium nodulans | 34 | 5.7 | |
| ISSer1 | IS110 | Saccharopolyspora erythraea | 34 | 5.7 | |
| ISAusp1 | IS1595 | ISNha5 | Aurantimonas sp. | 34 | 5.7 |
| ISMlo4 | IS3 | IS51 | Mesorhizobium loti | 34 | 5.7 |
| ISBps1 | IS3 | IS3 | Burkholderia pseudomallei | 34 | 5.7 |
| ISPosp3 | IS1595 | ISSod11 | Polaromonas sp. | 34 | 5.7 |
| ISPst4 | IS3 | IS51 | Pseudomonas stutzeri | 34 | 5.7 |
| ISRm3G | IS256 | - | Rhizobium meliloti | 34 | 5.7 |
| ISRm3 | IS256 | - | Rhizobium meliloti | 34 | 5.7 |
| ISAni1 | IS481 | - | Arthrobacter nicotinovorans | 34 | 5.7 |
| IS466 | ISL3 | - | Streptomyces coelicolor | 34 | 5.7 |
| IS406 | IS256 | - | Burkholderia cepacia | 34 | 5.7 |
| IS1602 | IS607 | Mycobacterium tuberculosis | 34 | 5.7 | |
| IS1601 | IS256 | - | Mycobacterium avium | 34 | 5.7 |
| IS1537 | IS607 | Mycobacterium tuberculosis | 34 | 5.7 | |
| IS1415 | IS21 | - | Rhodococcus erythropolis | 34 | 5.7 |
| IS13869 | ISL3 | - | Brevibacterium lactofermentum | 34 | 5.7 |
| IS1373 | IS5 | ISL2 | Streptomyces lividans | 34 | 5.7 |
>ISPfr3
Length = 1457
Score = 115 bits (58), Expect = 2e-24
Identities = 133/158 (84%)
Strand = Plus / Plus
Query: 3354 gggcaacgactcgagccggatcgcgccgtgctggcctgccgtgtggtcgagcccgatcag 3413
||||| ||||||||||||||||| ||||| ||||||||| |||||||||||||| |||
Sbjct: 219 gggcagcgactcgagccggatcgtgccgtattggcctgccaggtggtcgagcccgaccag 278
Query: 3414 tggtgtcgccgctgcggctgcgagggcctcccacgcgacaccgtcgtgcggcggctggcg 3473
||||| || |||||||||||||| || ||||| |||||||| || || ||||| ||
Sbjct: 279 tggtgccggcgctgcggctgcgaagggagaccacgtgacaccgtggtccgacggcttgcc 338
Query: 3474 cacgagccgctgggctggcgtcccaccatgctggaggt 3511
||||| || ||||||||||| ||||| | |||||||||
Sbjct: 339 cacgaaccactgggctggcggcccacgacgctggaggt 376
>ISPfr6
Length = 1436
Score = 105 bits (53), Expect = 2e-21
Identities = 90/101 (89%), Gaps = 1/101 (0%)
Strand = Plus / Plus
Query: 3218 gtaggggtcgaggtcttccgatgatgggagttctcacactg-cccatctggaagacctcg 3276
||||||||||||| ||||||| |||||| |||||||||| |||||| |||||||||||
Sbjct: 61 gtaggggtcgaggccttccgaggatgggggttctcacaccaacccatcgggaagacctcg 120
Query: 3277 acgtgtctgacgctaccttcgcttcccctgccctgaccacc 3317
||||| |||||||||||||||| |||||| ||||||||||
Sbjct: 121 acgtgcctgacgctaccttcgcgacccctgacctgaccacc 161
Score = 50.1 bits (25), Expect = 1e-04
Identities = 97/121 (80%)
Strand = Plus / Plus
Query: 3450 gacaccgtcgtgcggcggctggcgcacgagccgctgggctggcgtcccaccatgctggag 3509
||||| || ||||| ||||| || ||||| ||||| || ||||| || ||| ||||||||
Sbjct: 294 gacacggtggtgcgtcggctcgctcacgaaccgctcgggtggcggccgaccctgctggag 353
Query: 3510 gtgacgatccgtcgctaccggtgcgccgggtgcgggcacgtgtggcggcaggacaccagc 3569
||| |||| || ||||||||||||| |||| || |||||||| |||||||| |||
Sbjct: 354 gtgctcgtccgccggtaccggtgcgccgactgcgctcatgtgtggcgccaggacacgagc 413
Query: 3570 c 3570
|
Sbjct: 414 c 414
>ISAar30
Length = 1435
Score = 101 bits (51), Expect = 3e-20
Identities = 159/195 (81%)
Strand = Plus / Plus
Query: 3200 cggcgcgtcggtgcctgagtaggggtcgaggtcttccgatgatgggagttctcacactgc 3259
||||||||||||| | | || ||| ||||||||||||||||||||||||||||||| |
Sbjct: 43 cggcgcgtcggtgtcggggtgagggccgaggtcttccgatgatgggagttctcacacaac 102
Query: 3260 ccatctggaagacctcgacgtgtctgacgctaccttcgcttcccctgccctgaccaccct 3319
|| || ||||||||||| |||| |||||||||||||| | ||||| |||||| ||| |
Sbjct: 103 ccgtccggaagacctcggcgtgcctgacgctaccttcacgcgccctgacctgactacctt 162
Query: 3320 cgctcgcctcgatgggctcgggctggtggtgacggggcaacgactcgagccggatcgcgc 3379
| | |||||||| || ||||| |||| ||| || || || | |||||||| || || |
Sbjct: 163 cacccgcctcgacggcctcggtctggaggtcaccggccagctgctcgagcctgaccggtc 222
Query: 3380 cgtgctggcctgccg 3394
||||||||| |||||
Sbjct: 223 cgtgctggcgtgccg 237
Score = 38.2 bits (19), Expect = 0.36
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 3545 gcacgtgtggcggcaggacacca 3567
|||||||||||| ||||||||||
Sbjct: 388 gcacgtgtggcgtcaggacacca 410
>IS1096
Length = 2259
Score = 101 bits (51), Expect = 3e-20
Identities = 96/111 (86%)
Strand = Plus / Plus
Query: 3183 gagggtgtagagatggtcggcgcgtcggtgcctgagtaggggtcgaggtcttccgatgat 3242
|||||||||||| | ||||||||||||||||| | ||||||||||||||||||||||||
Sbjct: 15 gagggtgtagaggtcgtcggcgcgtcggtgccgggataggggtcgaggtcttccgatgat 74
Query: 3243 gggagttctcacactgcccatctggaagacctcgacgtgtctgacgctacc 3293
|| |||| || | ||||||| |||||||||||||| |||||||||||
Sbjct: 75 ggaggttcctacgccatccatctgaaagacctcgacgtgcctgacgctacc 125
Score = 56.0 bits (28), Expect = 2e-06
Identities = 88/108 (81%)
Strand = Plus / Plus
Query: 3324 cgcctcgatgggctcgggctggtggtgacggggcaacgactcgagccggatcgcgccgtg 3383
|||||||| | ||||||| ||| |||||| || ||||| ||||| || ||||| ||||||
Sbjct: 169 cgcctcgacgagctcgggttggaggtgaccggccaacgcctcgaccctgatcgggccgtg 228
Query: 3384 ctggcctgccgtgtggtcgagcccgatcagtggtgtcgccgctgcggc 3431
||||| ||||| || | ||| |||| |||||| ||||||||||||
Sbjct: 229 ctggcgtgccgggtcgccgatgaggatcggtggtgccgccgctgcggc 276
>ISBli1
Length = 1435
Score = 91.7 bits (46), Expect = 3e-17
Identities = 55/58 (94%)
Strand = Plus / Plus
Query: 3224 gtcgaggtcttccgatgatgggagttctcacactgcccatctggaagacctcgacgtg 3281
||||||||||||||||||||| ||||||||||||||||||| | ||||||||||||||
Sbjct: 67 gtcgaggtcttccgatgatggaagttctcacactgcccatccgaaagacctcgacgtg 124
Score = 40.1 bits (20), Expect = 0.092
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 3540 tgcgggcacgtgtggcggcaggacacca 3567
||||| ||||||||||| ||||||||||
Sbjct: 383 tgcggccacgtgtggcgccaggacacca 410
>ISPfr8
Length = 1436
Score = 89.7 bits (45), Expect = 1e-16
Identities = 108/129 (83%)
Strand = Plus / Plus
Query: 3222 gggtcgaggtcttccgatgatgggagttctcacactgcccatctggaagacctcgacgtg 3281
|||||| |||||||||||||||||||||| || ||||||||||| |||||| |||||||
Sbjct: 65 gggtcggggtcttccgatgatgggagttcctacgctgcccatctgaaagaccccgacgtg 124
Query: 3282 tctgacgctaccttcgcttcccctgccctgaccaccctcgctcgcctcgatgggctcggg 3341
|| |||||||||| ||| |||| | |||||||| |||| ||||| |||| |||||
Sbjct: 125 tcccacgctacctttgctgcccccgatctgaccacgttcgcccgcctggatgacctcggc 184
Query: 3342 ctggtggtg 3350
|| ||||||
Sbjct: 185 ctcgtggtg 193
Score = 34.2 bits (17), Expect = 5.7
Identities = 41/49 (83%)
Strand = Plus / Plus
Query: 3519 cgtcgctaccggtgcgccgggtgcgggcacgtgtggcggcaggacacca 3567
||||||||||| || | ||||| |||| |||||| ||||||||||||
Sbjct: 362 cgtcgctaccgctgttcggggtgtgggcgtgtgtggaggcaggacacca 410
>ISPfr4
Length = 1415
Score = 83.8 bits (42), Expect = 7e-15
Identities = 84/98 (85%)
Strand = Plus / Plus
Query: 3218 gtaggggtcgaggtcttccgatgatgggagttctcacactgcccatctggaagacctcga 3277
||||||| |||||||| ||||||||||| |||| |||| ||||| |||||||||||
Sbjct: 41 gtaggggccgaggtctcccgatgatgggggttcctacaccttccatccagaagacctcga 100
Query: 3278 cgtgtctgacgctaccttcgcttcccctgccctgacca 3315
| ||||||||||||||||||||| ||| | ||||||||
Sbjct: 101 cttgtctgacgctaccttcgcttgccccgacctgacca 138
Score = 40.1 bits (20), Expect = 0.092
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 3169 ggctcatcacaatcgagggtgtag 3192
||||| ||||||||||||||||||
Sbjct: 1415 ggctcttcacaatcgagggtgtag 1392
>ISPfr2
Length = 1731
Score = 79.8 bits (40), Expect = 1e-13
Identities = 211/268 (78%)
Strand = Plus / Plus
Query: 3302 ccctgccctgaccaccctcgctcgcctcgatgggctcgggctggtggtgacggggcaacg 3361
||||| ||||||| || ||||||| ||||| || ||||| ||| ||||| || |||||
Sbjct: 163 ccctgacctgaccgccttcgctcgactcgacggcctcggtctgagcgtgaccggacaacg 222
Query: 3362 actcgagccggatcgcgccgtgctggcctgccgtgtggtcgagcccgatcagtggtgtcg 3421
||| || |||||||| || || || || ||||| ||||| || || ||||||||||| ||
Sbjct: 223 acttgaaccggatcgtgcggtcctcgcgtgccgcgtggtggaaccagatcagtggtgccg 282
Query: 3422 ccgctgcggctgcgagggcctcccacgcgacaccgtcgtgcggcggctggcgcacgagcc 3481
|| |||||| |||| ||| | || |||||||| | |||||| |||| ||||||||
Sbjct: 283 acggtgcggcagcgaaggcgctgctcgtgacaccgtgatccggcggttggcccacgagcc 342
Query: 3482 gctgggctggcgtcccaccatgctggaggtgacgatccgtcgctaccggtgcgccgggtg 3541
|||||||||||| || ||| ||||||| || | || |||||||| || |||| ||
Sbjct: 343 gctgggctggcgaccgaccgtgctggaagttgtagtgcgccgctaccgctgtgccgactg 402
Query: 3542 cgggcacgtgtggcggcaggacaccagc 3569
||| ||||||||||| || |||||||||
Sbjct: 403 cggacacgtgtggcgccaagacaccagc 430
Score = 44.1 bits (22), Expect = 0.006
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 3268 aagacctcgacgtgtctgacgctacc 3293
|||||||||||||||| |||||||||
Sbjct: 117 aagacctcgacgtgtccgacgctacc 142
>ISAar39
Length = 1433
Score = 69.9 bits (35), Expect = 1e-10
Identities = 71/83 (85%)
Strand = Plus / Plus
Query: 3224 gtcgaggtcttccgatgatgggagttctcacactgcccatctggaagacctcgacgtgtc 3283
|||||||||| |||||||||| |||||| || || ||||||||||||||||||| || |
Sbjct: 65 gtcgaggtctcccgatgatggaagttctgacgctcgccatctggaagacctcgacatgcc 124
Query: 3284 tgacgctaccttcgcttcccctg 3306
||||||||||| | |||||||
Sbjct: 125 ccacgctaccttctcgtcccctg 147
>ISPfr1
Length = 1427
Score = 56.0 bits (28), Expect = 2e-06
Identities = 61/70 (87%), Gaps = 4/70 (5%)
Strand = Plus / Plus
Query: 3218 gtaggggtcgaggtcttcc-gatgatgggagttctcacactgcccatctg---gaagacc 3273
|||||||||||||||| || || ||||| |||||||||||| ||||||| |||||||
Sbjct: 49 gtaggggtcgaggtctccctgaggatggaagttctcacactcgccatctgccggaagacc 108
Query: 3274 tcgacgtgtc 3283
||||||||||
Sbjct: 109 tcgacgtgtc 118
>ISAnsp5
Length = 2192
Score = 40.1 bits (20), Expect = 0.092
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 15010 cgcgacgacgtcgcggccgt 15029
||||||||||||||||||||
Sbjct: 1184 cgcgacgacgtcgcggccgt 1165
>ISAsp11
Length = 1512
Score = 38.2 bits (19), Expect = 0.36
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 3963 gatgctggctgggcaactt 3981
|||||||||||||||||||
Sbjct: 1163 gatgctggctgggcaactt 1181
>ISRel15
Length = 2497
Score = 38.2 bits (19), Expect = 0.36
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 13630 cggccgcatcgagctcgac 13648
|||||||||||||||||||
Sbjct: 2223 cggccgcatcgagctcgac 2241
>ISBj7_B
Length = 2865
Score = 38.2 bits (19), Expect = 0.36
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 13630 cggccgcatcgagctcgac 13648
|||||||||||||||||||
Sbjct: 2248 cggccgcatcgagctcgac 2266
>ISApr6
Length = 2479
Score = 38.2 bits (19), Expect = 0.36
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 13630 cggccgcatcgagctcgac 13648
|||||||||||||||||||
Sbjct: 2199 cggccgcatcgagctcgac 2217
>ISHne3
Length = 1172
Score = 38.2 bits (19), Expect = 0.36
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 6690 tgcgatcgatgcggcggta 6708
|||||||||||||||||||
Sbjct: 482 tgcgatcgatgcggcggta 500
>ISAzs20
Length = 2811
Score = 36.2 bits (18), Expect = 1.4
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 12847 acagcctgatcgtgacgg 12864
||||||||||||||||||
Sbjct: 2398 acagcctgatcgtgacgg 2415
>ISPkr1
Length = 2469
Score = 36.2 bits (18), Expect = 1.4
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 2184 gaagaccgcggacgacacgatc 2205
||||||||||| ||||||||||
Sbjct: 709 gaagaccgcggtcgacacgatc 730
>ISHwa4
Length = 1285
Score = 36.2 bits (18), Expect = 1.4
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 10757 cgggaagggacttcccgg 10774
||||||||||||||||||
Sbjct: 383 cgggaagggacttcccgg 366
>ISNha8
Length = 1288
Score = 36.2 bits (18), Expect = 1.4
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 2263 ggcggctcgatccagatc 2280
||||||||||||||||||
Sbjct: 1203 ggcggctcgatccagatc 1220
>ISRpa8
Length = 1540
Score = 36.2 bits (18), Expect = 1.4
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 13409 cgcgatcatggtcgagcgctac 13430
|||||||||||||| |||||||
Sbjct: 755 cgcgatcatggtcgggcgctac 776
>IS693
Length = 3078
Score = 36.2 bits (18), Expect = 1.4
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 1626 gggccggccacgacggcc 1643
||||||||||||||||||
Sbjct: 2590 gggccggccacgacggcc 2573
>IS692
Length = 2563
Score = 36.2 bits (18), Expect = 1.4
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 16237 ggacgccggcgcgctcga 16254
||||||||||||||||||
Sbjct: 1577 ggacgccggcgcgctcga 1560
>ISCARN24
Length = 2778
Score = 36.2 bits (18), Expect = 1.4
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 5403 gtggcggccatgggcgcc 5420
||||||||||||||||||
Sbjct: 709 gtggcggccatgggcgcc 726
>ISBcen28
Length = 2311
Score = 36.2 bits (18), Expect = 1.4
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 2469 cctcgatctgcacgacga 2486
||||||||||||||||||
Sbjct: 2095 cctcgatctgcacgacga 2078
>ISAli15
Length = 2658
Score = 36.2 bits (18), Expect = 1.4
Identities = 24/26 (92%)
Strand = Plus / Minus
Query: 8577 ttggccagctgctcgtgcagcgcctc 8602
|||||||||| ||| |||||||||||
Sbjct: 1798 ttggccagctcctcatgcagcgcctc 1773
>IS1513
Length = 1705
Score = 36.2 bits (18), Expect = 1.4
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 5251 acgccggcagcgacatcg 5268
||||||||||||||||||
Sbjct: 498 acgccggcagcgacatcg 515
>TnXo19
Length = 18767
Score = 34.2 bits (17), Expect = 5.7
Identities = 23/25 (92%)
Strand = Plus / Plus
Query: 13388 cgtggcgccgctggtcctgctcgcg 13412
||||||| ||||| |||||||||||
Sbjct: 11170 cgtggcggcgctgctcctgctcgcg 11194
>TnAs1
Length = 6694
Score = 34.2 bits (17), Expect = 5.7
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 5067 gcccagcccgccggctcggcc 5087
||||||| |||||||||||||
Sbjct: 3966 gcccagctcgccggctcggcc 3946
>ISBj12
Length = 1743
Score = 34.2 bits (17), Expect = 5.7
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 9432 tcgcggcgctcgcggat 9448
|||||||||||||||||
Sbjct: 1210 tcgcggcgctcgcggat 1226
>ISFsp17
Length = 1693
Score = 34.2 bits (17), Expect = 5.7
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 2478 gcacgacgaggtcgagg 2494
|||||||||||||||||
Sbjct: 256 gcacgacgaggtcgagg 272
>ISAod1
Length = 1334
Score = 34.2 bits (17), Expect = 5.7
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 2903 cgtccgtctggtagccg 2919
|||||||||||||||||
Sbjct: 882 cgtccgtctggtagccg 866
>ISAzs18
Length = 2633
Score = 34.2 bits (17), Expect = 5.7
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 6883 tggcggcgggccaccgc 6899
|||||||||||||||||
Sbjct: 250 tggcggcgggccaccgc 234
>ISAzs11
Length = 1224
Score = 34.2 bits (17), Expect = 5.7
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 7620 cgctgagcgcgagcgaggcga 7640
||||||||||| |||||||||
Sbjct: 965 cgctgagcgcgcgcgaggcga 945
>ISRel24
Length = 2837
Score = 34.2 bits (17), Expect = 5.7
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 5432 gctcgtcgaagaactgc 5448
|||||||||||||||||
Sbjct: 2103 gctcgtcgaagaactgc 2119
Score = 34.2 bits (17), Expect = 5.7
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 5289 gacggcaccgacgaggg 5305
|||||||||||||||||
Sbjct: 2640 gacggcaccgacgaggg 2656
>ISPso1
Length = 1400
Score = 34.2 bits (17), Expect = 5.7
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 10703 cgctggagatcccgaag 10719
|||||||||||||||||
Sbjct: 361 cgctggagatcccgaag 377
>ISPfr16
Length = 1234
Score = 34.2 bits (17), Expect = 5.7
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 5362 ctggcaacctcctcgag 5378
|||||||||||||||||
Sbjct: 491 ctggcaacctcctcgag 475
>ISAar15
Length = 1418
Score = 34.2 bits (17), Expect = 5.7
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 2415 tcttcgccgtcaggtacgccg 2435
||||||||||||||| |||||
Sbjct: 1297 tcttcgccgtcaggttcgccg 1277
>ISAar14
Length = 1416
Score = 34.2 bits (17), Expect = 5.7
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 2415 tcttcgccgtcaggtacgccg 2435
||||||||||||||| |||||
Sbjct: 1295 tcttcgccgtcaggttcgccg 1275
>ISAar13
Length = 1416
Score = 34.2 bits (17), Expect = 5.7
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 2415 tcttcgccgtcaggtacgccg 2435
||||||||||||||| |||||
Sbjct: 1295 tcttcgccgtcaggttcgccg 1275
>ISMex28
Length = 1310
Score = 34.2 bits (17), Expect = 5.7
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 12770 gtaccggccgaccaccc 12786
|||||||||||||||||
Sbjct: 139 gtaccggccgaccaccc 155
>ISMdi10
Length = 1186
Score = 34.2 bits (17), Expect = 5.7
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 8587 gctcgtgcagcgcctcg 8603
|||||||||||||||||
Sbjct: 994 gctcgtgcagcgcctcg 1010
>ISMdi7
Length = 2568
Score = 34.2 bits (17), Expect = 5.7
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 1949 gcccgagcttcggcttc 1965
|||||||||||||||||
Sbjct: 285 gcccgagcttcggcttc 269
>ISAnsp4
Length = 2195
Score = 34.2 bits (17), Expect = 5.7
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 1953 gagcttcggcttcgtgt 1969
|||||||||||||||||
Sbjct: 1855 gagcttcggcttcgtgt 1839
>ISSav7
Length = 2992
Score = 34.2 bits (17), Expect = 5.7
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 4310 gccgacgcggtcggcgg 4326
|||||||||||||||||
Sbjct: 1089 gccgacgcggtcggcgg 1073
>ISKpn12
Length = 842
Score = 34.2 bits (17), Expect = 5.7
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 16377 gtgcggtgggccttgag 16393
|||||||||||||||||
Sbjct: 372 gtgcggtgggccttgag 356
>ISApr5
Length = 806
Score = 34.2 bits (17), Expect = 5.7
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 3144 cgatgccgagggcgagg 3160
|||||||||||||||||
Sbjct: 340 cgatgccgagggcgagg 356
>ISRfsp1
Length = 1503
Score = 34.2 bits (17), Expect = 5.7
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 9932 cacacccagcgctacgcgctg 9952
|||||||||||| ||||||||
Sbjct: 404 cacacccagcgcaacgcgctg 384
>ISMsm4
Length = 1458
Score = 34.2 bits (17), Expect = 5.7
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 8591 gtgcagcgcctcgagga 8607
|||||||||||||||||
Sbjct: 178 gtgcagcgcctcgagga 194
>ISMno1
Length = 1218
Score = 34.2 bits (17), Expect = 5.7
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 12181 gctgacctcgagcaccc 12197
|||||||||||||||||
Sbjct: 1023 gctgacctcgagcaccc 1007
>ISSer1
Length = 1447
Score = 34.2 bits (17), Expect = 5.7
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 14154 cccggatcatcaacgac 14170
|||||||||||||||||
Sbjct: 88 cccggatcatcaacgac 72
>ISAusp1
Length = 3418
Score = 34.2 bits (17), Expect = 5.7
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 6583 gtcgtggcggcgccagt 6599
|||||||||||||||||
Sbjct: 3058 gtcgtggcggcgccagt 3074
>ISMlo4
Length = 1239
Score = 34.2 bits (17), Expect = 5.7
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 14776 cgaggcaccggaacatc 14792
|||||||||||||||||
Sbjct: 368 cgaggcaccggaacatc 384
>ISBps1
Length = 1290
Score = 34.2 bits (17), Expect = 5.7
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 12266 gccggcctgctcagcct 12282
|||||||||||||||||
Sbjct: 223 gccggcctgctcagcct 207
>ISPosp3
Length = 1050
Score = 34.2 bits (17), Expect = 5.7
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 2906 ccgtctggtagccgcccagcc 2926
|||||||||||| ||||||||
Sbjct: 400 ccgtctggtagctgcccagcc 380
>ISPst4
Length = 1312
Score = 34.2 bits (17), Expect = 5.7
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 6659 gcttcgcggttcttccatgac 6679
||||||||| |||||||||||
Sbjct: 1137 gcttcgcggctcttccatgac 1117
>ISRm3G
Length = 1298
Score = 34.2 bits (17), Expect = 5.7
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 12369 ccgtatcggtcaccgcc 12385
|||||||||||||||||
Sbjct: 485 ccgtatcggtcaccgcc 469
>ISRm3
Length = 1298
Score = 34.2 bits (17), Expect = 5.7
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 12369 ccgtatcggtcaccgcc 12385
|||||||||||||||||
Sbjct: 485 ccgtatcggtcaccgcc 469
>ISAni1
Length = 1075
Score = 34.2 bits (17), Expect = 5.7
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 10603 cagtacccggtggacgg 10619
|||||||||||||||||
Sbjct: 432 cagtacccggtggacgg 416
>IS466
Length = 1628
Score = 34.2 bits (17), Expect = 5.7
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 122 tgagggcacggactccg 138
|||||||||||||||||
Sbjct: 150 tgagggcacggactccg 166
>IS406
Length = 1367
Score = 34.2 bits (17), Expect = 5.7
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 13819 ggtgggtctgacgccat 13835
|||||||||||||||||
Sbjct: 104 ggtgggtctgacgccat 120
>IS1602
Length = 2053
Score = 34.2 bits (17), Expect = 5.7
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 602 ggtcgcctggcaggcgtcgat 622
||||||||| |||||||||||
Sbjct: 817 ggtcgcctgccaggcgtcgat 797
>IS1601
Length = 1417
Score = 34.2 bits (17), Expect = 5.7
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 7401 cgtcatcgtgtcggtga 7417
|||||||||||||||||
Sbjct: 41 cgtcatcgtgtcggtga 57
>IS1537
Length = 1921
Score = 34.2 bits (17), Expect = 5.7
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 8536 cgaggccgctcttgtcg 8552
|||||||||||||||||
Sbjct: 465 cgaggccgctcttgtcg 481
>IS1415
Length = 2580
Score = 34.2 bits (17), Expect = 5.7
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 983 cggcgtcgcggtctggg 999
|||||||||||||||||
Sbjct: 1292 cggcgtcgcggtctggg 1276
>IS13869
Length = 1437
Score = 34.2 bits (17), Expect = 5.7
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 2417 ttcgccgtcaggtacgc 2433
|||||||||||||||||
Sbjct: 787 ttcgccgtcaggtacgc 803
>IS1373
Length = 817
Score = 34.2 bits (17), Expect = 5.7
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 6602 tcgtgcccggcgatgga 6618
|||||||||||||||||
Sbjct: 681 tcgtgcccggcgatgga 665
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_33_length_16783_cov_83.5908_ID_5234
(16,783 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISShes11 | Tn3 | Shewanella sp. | 44 | 0.006 | |
| ISArsp6 | Tn3 | Arthrobacter sp. | 44 | 0.006 | |
| ISRhosp1 | IS3 | IS3 | Rhodococcus sp. | 42 | 0.023 |
| ISPaes3 | IS256 | Paracoccus aestuarii | 40 | 0.092 | |
| ISFlsp1 | IS21 | Flavobacterium sp | 40 | 0.092 | |
| ISTni1 | ISKra4 | ISKra4 | Thioalkalivibrio nitratireducens | 38 | 0.36 |
| ISMno22 | IS110 | IS1111 | Methylobacterium nodulans | 38 | 0.36 |
| ISAzba8 | IS256 | Azospirillum brasilense | 38 | 0.36 | |
| ISThsp3 | IS66 | Thiomonas sp. | 38 | 0.36 | |
| ISTesp1 | IS3 | IS51 | Terrabacter sp. | 38 | 0.36 |
| IS117 | IS110 | - | Streptomyces coelicolor | 38 | 0.36 |
| IS1164 | IS256 | - | Rhodococcus rhodochrous | 38 | 0.36 |
| ISRsp12 | Tn3 | Rhizhobium sp. | 36 | 1.4 | |
| ISBj11 | IS21 | Bradyrhizobium japonicum | 36 | 1.4 | |
| ISPna3 | IS5 | IS5 | Polaromonas naphthalenivorans | 36 | 1.4 |
| ISPfr11 | IS3 | IS3 | Propionibacterium freudenreichii | 36 | 1.4 |
| ISAar25 | IS3 | IS3 | Arthrobacter arilaitensis | 36 | 1.4 |
| ISAzo26 | IS91 | Azoarcus sp. | 36 | 1.4 | |
| ISThsp4 | IS3 | IS3 | Thiomonas sp. | 36 | 1.4 |
| ISCARN23 | IS1634 | Metagenomic data from CARNOULES | 36 | 1.4 | |
| ISStau2 | IS66 | ISBst12 | Stigmatella aurantiaca | 36 | 1.4 |
| ISAau4 | Tn3 | Arthrobacter aurescens | 36 | 1.4 | |
| ISRhosp7 | IS110 | Rhodococcus sp. | 36 | 1.4 | |
| ISRhosp8 | IS110 | Rhodococcus sp. | 36 | 1.4 | |
| ISPepr1 | IS4 | ISPepr1 | Pelobacter propionicus | 36 | 1.4 |
| ISTfe1 | ISL3 | Acidithiobacillus ferrooxidans | 36 | 1.4 | |
| IS401 | IS3 | IS51 | Burkholderia cepacia | 36 | 1.4 |
| IS1481A | IS4 | is10 | Xanthomonas campestris | 36 | 1.4 |
| TnAs3 | Tn3 | Aeromonas salmonicida | 34 | 5.7 | |
| ISHarch17 | IS200/IS605 | IS1341 | Halophilic archaeon | 34 | 5.7 |
| ISHwa28 | IS200/IS605 | IS1341 | Haloquadratum walsbyi | 34 | 5.7 |
| TnAs2 | Tn3 | Aeromonas salmonicida | 34 | 5.7 | |
| ISAs21 | IS66 | ISBst12 | Aeromonas salmonicida | 34 | 5.7 |
| ISFK1 | IS21 | Bradyrhizobium japonicum | 34 | 5.7 | |
| ISMtu1 | IS256 | Mycobacterium tusciae | 34 | 5.7 | |
| ISH31 | ISH6 | Halobacterium sp. | 34 | 5.7 | |
| ISAzs29 | Tn3 | Azospirillum sp. | 34 | 5.7 | |
| ISAzs27 | IS30 | Azospirillum sp. | 34 | 5.7 | |
| ISAzs26 | ISKra4 | ISAzba1 | Azospirillum sp. | 34 | 5.7 |
| ISBsp4 | IS1182 | Bacillus sp. | 34 | 5.7 | |
| ISGau7 | IS21 | Gemmatimonas aurantiaca | 34 | 5.7 | |
| ISAtc3 | ISL3 | Acidithiobacillus caldus | 34 | 5.7 | |
| ISNha6 | IS5 | IS5 | Nitrobacter hamburgensis | 34 | 5.7 |
| ISRop2 | ISAzo13 | Rhodococcus opacus | 34 | 5.7 | |
| ISSpma2 | IS256 | Sphingopyxis macrogoltabida | 34 | 5.7 | |
| ISMno30 | ISL3 | Methylobacterium nodulans | 34 | 5.7 | |
| ISMtsp8 | IS21 | Methylobacterium sp. | 34 | 5.7 | |
| ISMno5 | ISL3 | Methylobacterium nodulans | 34 | 5.7 | |
| ISAar42 | ISL3 | Arthrobacter arilaitensis | 34 | 5.7 | |
| ISMch4 | IS110 | IS1111 | Methylobacterium chloromethanicum | 34 | 5.7 |
| ISBli4 | IS1380 | Brevibacterium linens | 34 | 5.7 | |
| ISBfun3 | IS1182 | Burkholderia fungorum | 34 | 5.7 | |
| ISMex35 | IS5 | IS5 | Methylobacterium extorquens | 34 | 5.7 |
| ISAnsp5 | IS21 | Anaeromyxobacter sp. | 34 | 5.7 | |
| ISAzo41 | IS5 | IS5 | Azoarcus sp. | 34 | 5.7 |
| ISCARN56 | IS607 | Metagenomic data from CARNOULES | 34 | 5.7 | |
| ISSav7 | IS481 | Streptomyces avermitilis | 34 | 5.7 | |
| ISCARN13 | ISL3 | Metagenomic data from CARNOULES | 34 | 5.7 | |
| ISAtc1 | ISL3 | Acidithiobacillus caldus | 34 | 5.7 | |
| ISXau4 | IS66 | Xanthobacter autotrophicus | 34 | 5.7 | |
| ISAzca2 | IS66 | Azorhizobium caulinodans | 34 | 5.7 | |
| ISDds2 | IS4 | IS10 | Deinococcus deserti | 34 | 5.7 |
| ISMsm7 | IS3 | IS3 | Mycobacterium smegmatis | 34 | 5.7 |
| ISHne3 | IS110 | Hyphomonas neptunium | 34 | 5.7 | |
| ISMno1 | ISAs1 | Methylobacterium nodulans | 34 | 5.7 | |
| ISPpr4 | IS4 | IS50 | Photobacterium profundum | 34 | 5.7 |
| ISNph3 | ISH6 | Natronomonas pharaonis | 34 | 5.7 | |
| ISHma5 | ISH6 | Haloarcula marismortui | 34 | 5.7 | |
| ISXax1 | IS256 | Xanthomonas axonopodis | 34 | 5.7 | |
| ISHla10 | ISH6 | Halorubrum lacusprofundi | 34 | 5.7 | |
| ISPsp2 | ISL3 | - | Pseudomonas sp. | 34 | 5.7 |
| ISHs1 | ISH6 | Halobacterium salinarum | 34 | 5.7 | |
| ISH6 | ISH6 | Halobacterium salinarum | 34 | 5.7 | |
| IS900 | IS110 | - | Mycobacterium paratuberculosis | 34 | 5.7 |
| IS1648 | IS5 | IS427 | Streptomyces coelicolor | 34 | 5.7 |
| IS1411 | ISL3 | - | Pseudomonas sp | 34 | 5.7 |
| IS1110 | IS110 | - | Mycobacterium avium | 34 | 5.7 |
| IS1066 | IS630 | - | Pseudomonas sp. | 34 | 5.7 |
>ISShes11
Length = 7669
Score = 44.1 bits (22), Expect = 0.006
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 2616 gtcggaatggtcggcgacggcatcaacgacgccccggc 2653
||||| |||||||| || ||||||||||| ||||||||
Sbjct: 2645 gtcggcatggtcggtgatggcatcaacgatgccccggc 2682
Score = 38.2 bits (19), Expect = 0.36
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 2031 ctggacaagaccggcaccatcac 2053
||||||||||||||||| |||||
Sbjct: 2063 ctggacaagaccggcacgatcac 2085
>ISArsp6
Length = 26712
Score = 44.1 bits (22), Expect = 0.006
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 2622 atggtcggcgacggcatcaacgacgccccggcgctggc 2659
|||||||| |||||| | |||||||||||||| |||||
Sbjct: 4157 atggtcggggacggcgtgaacgacgccccggccctggc 4120
Score = 34.2 bits (17), Expect = 5.7
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 4335 gttccccagggcgccgg 4351
|||||||||||||||||
Sbjct: 6419 gttccccagggcgccgg 6403
>ISRhosp1
Length = 1321
Score = 42.1 bits (21), Expect = 0.023
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 9506 gcggctgcgcgcggagaacgc 9526
|||||||||||||||||||||
Sbjct: 285 gcggctgcgcgcggagaacgc 305
>ISPaes3
Length = 1393
Score = 40.1 bits (20), Expect = 0.092
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 8613 tgctctgggcgctgctcgcc 8632
||||||||||||||||||||
Sbjct: 1221 tgctctgggcgctgctcgcc 1240
>ISFlsp1
Length = 2669
Score = 40.1 bits (20), Expect = 0.092
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 8234 ccgacggcggtgaacgggac 8253
||||||||||||||||||||
Sbjct: 2250 ccgacggcggtgaacgggac 2231
>ISTni1
Length = 2377
Score = 38.2 bits (19), Expect = 0.36
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 5213 ggcctggcgctggtcctgg 5231
|||||||||||||||||||
Sbjct: 1228 ggcctggcgctggtcctgg 1210
Score = 34.2 bits (17), Expect = 5.7
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 8095 ggccgcggccgcgacga 8111
|||||||||||||||||
Sbjct: 875 ggccgcggccgcgacga 891
>ISMno22
Length = 1426
Score = 38.2 bits (19), Expect = 0.36
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 11843 ctcgccgcccgcgcctccc 11861
|||||||||||||||||||
Sbjct: 197 ctcgccgcccgcgcctccc 179
>ISAzba8
Length = 1321
Score = 38.2 bits (19), Expect = 0.36
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 866 cggcgcgcacgccgatggc 884
|||||||||||||||||||
Sbjct: 635 cggcgcgcacgccgatggc 617
>ISThsp3
Length = 2455
Score = 38.2 bits (19), Expect = 0.36
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 4407 gcccagcgccgcgcccaga 4425
|||||||||||||||||||
Sbjct: 360 gcccagcgccgcgcccaga 378
>ISTesp1
Length = 1353
Score = 38.2 bits (19), Expect = 0.36
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 13273 cgcgccgagggtatcgagg 13291
|||||||||||||||||||
Sbjct: 672 cgcgccgagggtatcgagg 690
>IS117
Length = 2527
Score = 38.2 bits (19), Expect = 0.36
Identities = 37/43 (86%)
Strand = Plus / Minus
Query: 10467 aagtcctacgccgggaccgcaccgatcaccaaagcctccggca 10509
||||||||||| || |||||||||||||| ||||||||||
Sbjct: 818 aagtcctacgcgggctccgcaccgatcacccgcgcctccggca 776
>IS1164
Length = 1430
Score = 38.2 bits (19), Expect = 0.36
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 8424 tcgtcggagcgttggccgt 8442
|||||||||||||||||||
Sbjct: 294 tcgtcggagcgttggccgt 276
>ISRsp12
Length = 3701
Score = 36.2 bits (18), Expect = 1.4
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 4410 cagcgccgcgcccagaccggcc 4431
|||||||||||||||| |||||
Sbjct: 3364 cagcgccgcgcccagatcggcc 3385
>ISBj11
Length = 2649
Score = 36.2 bits (18), Expect = 1.4
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 7241 cgcactcgccgccggcga 7258
||||||||||||||||||
Sbjct: 1989 cgcactcgccgccggcga 2006
>ISPna3
Length = 1425
Score = 36.2 bits (18), Expect = 1.4
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 2643 gacgccccggcgctggcc 2660
||||||||||||||||||
Sbjct: 1205 gacgccccggcgctggcc 1188
>ISPfr11
Length = 1315
Score = 36.2 bits (18), Expect = 1.4
Identities = 33/38 (86%)
Strand = Plus / Plus
Query: 9504 aagcggctgcgcgcggagaacgccgagctgcggatgga 9541
|||||||| ||| ||||||||| || |||||||||||
Sbjct: 285 aagcggctccgcaaggagaacgcggacctgcggatgga 322
>ISAar25
Length = 1309
Score = 36.2 bits (18), Expect = 1.4
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 9423 accctgggcaactgggtc 9440
||||||||||||||||||
Sbjct: 163 accctgggcaactgggtc 180
>ISAzo26
Length = 2604
Score = 36.2 bits (18), Expect = 1.4
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 14751 ggcggcctgcagcaggtcctcg 14772
||||||| ||||||||||||||
Sbjct: 1769 ggcggcccgcagcaggtcctcg 1790
>ISThsp4
Length = 1289
Score = 36.2 bits (18), Expect = 1.4
Identities = 30/34 (88%)
Strand = Plus / Plus
Query: 9506 gcggctgcgcgcggagaacgccgagctgcggatg 9539
||||||| | |||||||||||| ||||||||||
Sbjct: 273 gcggctgagggcggagaacgcccggctgcggatg 306
>ISCARN23
Length = 1907
Score = 36.2 bits (18), Expect = 1.4
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 1623 gacgaggtcatcggcgcgacca 1644
|||||||||||||||| |||||
Sbjct: 1108 gacgaggtcatcggcgagacca 1129
>ISStau2
Length = 1585
Score = 36.2 bits (18), Expect = 1.4
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 8629 cgccgccgtgccggcggt 8646
||||||||||||||||||
Sbjct: 1263 cgccgccgtgccggcggt 1246
>ISAau4
Length = 3898
Score = 36.2 bits (18), Expect = 1.4
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 5297 tggggcggcgggctgctg 5314
||||||||||||||||||
Sbjct: 2175 tggggcggcgggctgctg 2192
>ISRhosp7
Length = 1455
Score = 36.2 bits (18), Expect = 1.4
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 1480 tcgacgacgtcctcgccggcga 1501
||||||||| ||||||||||||
Sbjct: 654 tcgacgacgacctcgccggcga 675
Score = 34.2 bits (17), Expect = 5.7
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 7250 cgccggcgaggtcgtcg 7266
|||||||||||||||||
Sbjct: 674 cgccggcgaggtcgtcg 658
>ISRhosp8
Length = 1439
Score = 36.2 bits (18), Expect = 1.4
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 1480 tcgacgacgtcctcgccggcga 1501
||||||||| ||||||||||||
Sbjct: 637 tcgacgacgacctcgccggcga 658
Score = 34.2 bits (17), Expect = 5.7
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 7250 cgccggcgaggtcgtcg 7266
|||||||||||||||||
Sbjct: 657 cgccggcgaggtcgtcg 641
>ISPepr1
Length = 1556
Score = 36.2 bits (18), Expect = 1.4
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 13388 gaccaaggcccagcgtctgctc 13409
|||||||||||||| |||||||
Sbjct: 772 gaccaaggcccagcctctgctc 793
>ISTfe1
Length = 1303
Score = 36.2 bits (18), Expect = 1.4
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 6553 ctcatcgacgccgacggc 6570
||||||||||||||||||
Sbjct: 554 ctcatcgacgccgacggc 537
>IS401
Length = 1316
Score = 36.2 bits (18), Expect = 1.4
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 14051 gaccgggtccagcgggtg 14068
||||||||||||||||||
Sbjct: 725 gaccgggtccagcgggtg 742
>IS1481A
Length = 1350
Score = 36.2 bits (18), Expect = 1.4
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 1298 gccgcaggacgtgcggga 1315
||||||||||||||||||
Sbjct: 684 gccgcaggacgtgcggga 701
>TnAs3
Length = 18735
Score = 34.2 bits (17), Expect = 5.7
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 14086 ggttggcttgccgatca 14102
|||||||||||||||||
Sbjct: 11203 ggttggcttgccgatca 11219
>ISHarch17
Length = 1585
Score = 34.2 bits (17), Expect = 5.7
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 9593 tcgtcggaaacggcgag 9609
|||||||||||||||||
Sbjct: 251 tcgtcggaaacggcgag 235
>ISHwa28
Length = 1482
Score = 34.2 bits (17), Expect = 5.7
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 9593 tcgtcggaaacggcgag 9609
|||||||||||||||||
Sbjct: 195 tcgtcggaaacggcgag 179
>TnAs2
Length = 8650
Score = 34.2 bits (17), Expect = 5.7
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 1455 gacgggatcgagaccga 1471
|||||||||||||||||
Sbjct: 3045 gacgggatcgagaccga 3061
>ISAs21
Length = 1530
Score = 34.2 bits (17), Expect = 5.7
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 3088 cgacccaccaagccatc 3104
|||||||||||||||||
Sbjct: 729 cgacccaccaagccatc 745
>ISFK1
Length = 2592
Score = 34.2 bits (17), Expect = 5.7
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 938 ggtgggcgttgtggacg 954
|||||||||||||||||
Sbjct: 2418 ggtgggcgttgtggacg 2402
>ISMtu1
Length = 1474
Score = 34.2 bits (17), Expect = 5.7
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 11644 gatcgccgcggcgtgcg 11660
|||||||||||||||||
Sbjct: 294 gatcgccgcggcgtgcg 310
>ISH31
Length = 1445
Score = 34.2 bits (17), Expect = 5.7
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 2623 tggtcggcgacggcatc 2639
|||||||||||||||||
Sbjct: 548 tggtcggcgacggcatc 532
>ISAzs29
Length = 3897
Score = 34.2 bits (17), Expect = 5.7
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 13950 gggccgtcgaggatcag 13966
|||||||||||||||||
Sbjct: 2314 gggccgtcgaggatcag 2330
>ISAzs27
Length = 1270
Score = 34.2 bits (17), Expect = 5.7
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 11943 ggccggacgattggcga 11959
|||||||||||||||||
Sbjct: 612 ggccggacgattggcga 596
>ISAzs26
Length = 2226
Score = 34.2 bits (17), Expect = 5.7
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 11333 cggctgaccgtgctcgg 11349
|||||||||||||||||
Sbjct: 1696 cggctgaccgtgctcgg 1712
>ISBsp4
Length = 1878
Score = 34.2 bits (17), Expect = 5.7
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 14230 cccgccccgcggagtcg 14246
|||||||||||||||||
Sbjct: 136 cccgccccgcggagtcg 120
>ISGau7
Length = 2510
Score = 34.2 bits (17), Expect = 5.7
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 14483 cgtcggtgagctcttcg 14499
|||||||||||||||||
Sbjct: 2106 cgtcggtgagctcttcg 2090
>ISAtc3
Length = 1302
Score = 34.2 bits (17), Expect = 5.7
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 6554 tcatcgacgccgacggc 6570
|||||||||||||||||
Sbjct: 552 tcatcgacgccgacggc 536
>ISNha6
Length = 1547
Score = 34.2 bits (17), Expect = 5.7
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 1632 atcggcgcgaccatcaa 1648
|||||||||||||||||
Sbjct: 1169 atcggcgcgaccatcaa 1185
>ISRop2
Length = 2171
Score = 34.2 bits (17), Expect = 5.7
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 13818 cccgacccgtcggcgcc 13834
|||||||||||||||||
Sbjct: 280 cccgacccgtcggcgcc 264
>ISSpma2
Length = 1422
Score = 34.2 bits (17), Expect = 5.7
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 13456 aactggtcggcgacctg 13472
|||||||||||||||||
Sbjct: 1039 aactggtcggcgacctg 1023
>ISMno30
Length = 1773
Score = 34.2 bits (17), Expect = 5.7
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 5506 ggtcggcggggcggcgc 5522
|||||||||||||||||
Sbjct: 236 ggtcggcggggcggcgc 220
>ISMtsp8
Length = 2371
Score = 34.2 bits (17), Expect = 5.7
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 2517 gccatcgcccgccaggtcggc 2537
||||||||||||||| |||||
Sbjct: 211 gccatcgcccgccagctcggc 231
>ISMno5
Length = 1728
Score = 34.2 bits (17), Expect = 5.7
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 7662 gtcgccgagcggcgcac 7678
|||||||||||||||||
Sbjct: 1208 gtcgccgagcggcgcac 1224
>ISAar42
Length = 1443
Score = 34.2 bits (17), Expect = 5.7
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 3695 gcgggcgcgtcaccgtg 3711
|||||||||||||||||
Sbjct: 310 gcgggcgcgtcaccgtg 294
>ISMch4
Length = 1631
Score = 34.2 bits (17), Expect = 5.7
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 13264 cgcgaggcccgcgccga 13280
|||||||||||||||||
Sbjct: 657 cgcgaggcccgcgccga 673
>ISBli4
Length = 1713
Score = 34.2 bits (17), Expect = 5.7
Identities = 23/25 (92%)
Strand = Plus / Plus
Query: 6045 gaccaagcgcactgccggacaggac 6069
|||||| ||||||||||| ||||||
Sbjct: 1098 gaccaaacgcactgccgggcaggac 1122
>ISBfun3
Length = 1627
Score = 34.2 bits (17), Expect = 5.7
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 8731 cgtcgaccctgcggtgatcca 8751
|||||||| ||||||||||||
Sbjct: 815 cgtcgaccgtgcggtgatcca 795
>ISMex35
Length = 1294
Score = 34.2 bits (17), Expect = 5.7
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 457 atcgccaagaagccggc 473
|||||||||||||||||
Sbjct: 504 atcgccaagaagccggc 488
>ISAnsp5
Length = 2192
Score = 34.2 bits (17), Expect = 5.7
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 12586 cgaaccgccgaccggcg 12602
|||||||||||||||||
Sbjct: 876 cgaaccgccgaccggcg 860
>ISAzo41
Length = 1158
Score = 34.2 bits (17), Expect = 5.7
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 11222 gcggcgctggccgccgcggtc 11242
|||||||||||||||| ||||
Sbjct: 190 gcggcgctggccgccgaggtc 210
>ISCARN56
Length = 1894
Score = 34.2 bits (17), Expect = 5.7
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 16023 gcgtcgggtcggcggct 16039
|||||||||||||||||
Sbjct: 476 gcgtcgggtcggcggct 492
>ISSav7
Length = 2992
Score = 34.2 bits (17), Expect = 5.7
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 11215 cggcccggcggcgctgg 11231
|||||||||||||||||
Sbjct: 1593 cggcccggcggcgctgg 1609
Score = 34.2 bits (17), Expect = 5.7
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 3123 accgtcgaccccgacgacgcc 3143
||||||| |||||||||||||
Sbjct: 1666 accgtcgtccccgacgacgcc 1686
>ISCARN13
Length = 1302
Score = 34.2 bits (17), Expect = 5.7
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 6554 tcatcgacgccgacggc 6570
|||||||||||||||||
Sbjct: 552 tcatcgacgccgacggc 536
>ISAtc1
Length = 1302
Score = 34.2 bits (17), Expect = 5.7
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 6554 tcatcgacgccgacggc 6570
|||||||||||||||||
Sbjct: 552 tcatcgacgccgacggc 536
>ISXau4
Length = 2458
Score = 34.2 bits (17), Expect = 5.7
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 11719 cggcaccggcgtcctgctggt 11739
||||||||||||| |||||||
Sbjct: 693 cggcaccggcgtcgtgctggt 713
>ISAzca2
Length = 2458
Score = 34.2 bits (17), Expect = 5.7
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 11719 cggcaccggcgtcctgctggt 11739
||||||||||||| |||||||
Sbjct: 693 cggcaccggcgtcgtgctggt 713
>ISDds2
Length = 1069
Score = 34.2 bits (17), Expect = 5.7
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 9658 cgtcgtcgttgccgggaggcg 9678
||||| |||||||||||||||
Sbjct: 630 cgtcgccgttgccgggaggcg 610
>ISMsm7
Length = 1280
Score = 34.2 bits (17), Expect = 5.7
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 2842 ccatcgccgccggcgcc 2858
|||||||||||||||||
Sbjct: 1146 ccatcgccgccggcgcc 1162
>ISHne3
Length = 1172
Score = 34.2 bits (17), Expect = 5.7
Identities = 23/25 (92%)
Strand = Plus / Minus
Query: 207 ccgccggttgaccggctctgccaac 231
||||||| ||||| |||||||||||
Sbjct: 590 ccgccgggtgaccagctctgccaac 566
>ISMno1
Length = 1218
Score = 34.2 bits (17), Expect = 5.7
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 11591 gcggcggaccgacttgc 11607
|||||||||||||||||
Sbjct: 426 gcggcggaccgacttgc 410
>ISPpr4
Length = 1400
Score = 34.2 bits (17), Expect = 5.7
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 13492 gcatcaacatccaacac 13508
|||||||||||||||||
Sbjct: 1009 gcatcaacatccaacac 993
>ISNph3
Length = 1449
Score = 34.2 bits (17), Expect = 5.7
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 2623 tggtcggcgacggcatc 2639
|||||||||||||||||
Sbjct: 552 tggtcggcgacggcatc 536
>ISHma5
Length = 1449
Score = 34.2 bits (17), Expect = 5.7
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 2623 tggtcggcgacggcatc 2639
|||||||||||||||||
Sbjct: 552 tggtcggcgacggcatc 536
>ISXax1
Length = 1329
Score = 34.2 bits (17), Expect = 5.7
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 8195 gtgtacctggccatcgg 8211
|||||||||||||||||
Sbjct: 634 gtgtacctggccatcgg 650
>ISHla10
Length = 1444
Score = 34.2 bits (17), Expect = 5.7
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 2623 tggtcggcgacggcatc 2639
|||||||||||||||||
Sbjct: 547 tggtcggcgacggcatc 531
>ISPsp2
Length = 1416
Score = 34.2 bits (17), Expect = 5.7
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 4568 tgctcgatgtgctggaa 4584
|||||||||||||||||
Sbjct: 695 tgctcgatgtgctggaa 711
>ISHs1
Length = 1449
Score = 34.2 bits (17), Expect = 5.7
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 2623 tggtcggcgacggcatc 2639
|||||||||||||||||
Sbjct: 552 tggtcggcgacggcatc 536
>ISH6
Length = 1448
Score = 34.2 bits (17), Expect = 5.7
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 2623 tggtcggcgacggcatc 2639
|||||||||||||||||
Sbjct: 551 tggtcggcgacggcatc 535
>IS900
Length = 1451
Score = 34.2 bits (17), Expect = 5.7
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 5935 caccgaaaccggcgacaccga 5955
|||||||| ||||||||||||
Sbjct: 982 caccgaaatcggcgacaccga 1002
>IS1648
Length = 969
Score = 34.2 bits (17), Expect = 5.7
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 2945 caaccggctcaagaccttccg 2965
|||||||||||||| ||||||
Sbjct: 836 caaccggctcaagaacttccg 856
>IS1411
Length = 1419
Score = 34.2 bits (17), Expect = 5.7
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 4568 tgctcgatgtgctggaa 4584
|||||||||||||||||
Sbjct: 698 tgctcgatgtgctggaa 714
>IS1110
Length = 1462
Score = 34.2 bits (17), Expect = 5.7
Identities = 23/25 (92%)
Strand = Plus / Plus
Query: 10369 tgatcaccagcctgccgggcctggg 10393
|||||||||||||||| ||| ||||
Sbjct: 1054 tgatcaccagcctgcccggcatggg 1078
>IS1066
Length = 1137
Score = 34.2 bits (17), Expect = 5.7
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 14469 gtcggcgatctcgtcgt 14485
|||||||||||||||||
Sbjct: 221 gtcggcgatctcgtcgt 205
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_34_length_15160_cov_60.8738_ID_5236
(15,160 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| TnAs3 | Tn3 | Aeromonas salmonicida | 50 | 9e-05 | |
| IS931 | IS256 | - | Burkholderia cepacia | 42 | 0.021 |
| IS2001 | ISL3 | - | Bifidobacterium lactis | 42 | 0.021 |
| ISNoc2 | IS5 | IS5 | Nitrosococcus oceani | 40 | 0.083 |
| ISCARN14 | IS5 | IS1031 | Metagenomic data from CARNOULES | 40 | 0.083 |
| ISHoc2 | ISKra4 | ISKra4 | Haliangium ochraceum | 38 | 0.33 |
| ISThsp12 | IS1634 | Thiomonas sp. | 38 | 0.33 | |
| ISAs32 | IS3 | IS51 | Aeromonas salmonicida | 36 | 1.3 |
| ISPa62 | IS110 | IS1111 | Pseudomonas aeruginosa | 36 | 1.3 |
| ISTni2 | IS481 | Thioalkalivibrio nitratireducens | 36 | 1.3 | |
| ISAzs13 | ISL3 | Azospirillum sp. | 36 | 1.3 | |
| ISAzo38 | IS5 | IS427 | Azoarcus sp. | 36 | 1.3 |
| IS1553 | IS256 | Mycobacterium tuberculosis | 36 | 1.3 | |
| ISLxc3 | IS30 | Leifsonia xyli | 36 | 1.3 | |
| ISRso15 | ISL3 | - | Ralstonia solanacearum | 36 | 1.3 |
| TnAs2 | Tn3 | Aeromonas salmonicida | 34 | 5.1 | |
| ISAs7 | IS3 | IS51 | Aeromonas salmonicida | 34 | 5.1 |
| ISIde1 | ISL3 | Ideonella dechloratans | 34 | 5.1 | |
| ISPa54 | IS5 | IS5 | Pseudomonas aeruginosa | 34 | 5.1 |
| ISMyo1 | IS256 | Mycobacterium yongonense | 34 | 5.1 | |
| ISSer2 | IS256 | Saccharopolyspora erythraea | 34 | 5.1 | |
| ISAmi2 | IS5 | ISL2 | Actinosynnema mirum | 34 | 5.1 |
| ISAmi1 | IS5 | ISL2 | Actinosynnema mirum | 34 | 5.1 |
| ISGau3 | IS3 | IS51 | Gemmatimonas aurantiaca | 34 | 5.1 |
| ISGvi6 | IS1182 | Gloeobacter violaceus | 34 | 5.1 | |
| ISFsp13 | ISAzo13 | Frankia sp. | 34 | 5.1 | |
| ISMtsp5 | IS3 | IS2 | Methylobacterium sp. | 34 | 5.1 |
| ISMpo6 | IS1182 | Methylobacterium populi | 34 | 5.1 | |
| ISPfr7 | ISL3 | Propionibacterium freudenreichii | 34 | 5.1 | |
| ISArsp6 | Tn3 | Arthrobacter sp. | 34 | 5.1 | |
| ISStr1 | IS1380 | Salinispora tropica | 34 | 5.1 | |
| ISFsp15 | IS1380 | Frankia sp. | 34 | 5.1 | |
| ISFsp14 | IS1380 | Frankia sp. | 34 | 5.1 | |
| ISMex38 | Tn3 | Methylobacterium extorquens | 34 | 5.1 | |
| ISMex8 | IS21 | Methylobacterium extorquens | 34 | 5.1 | |
| ISAzo17 | IS21 | Azoarcus sp. | 34 | 5.1 | |
| ISAzo15 | IS66 | Azoarcus sp. | 34 | 5.1 | |
| ISAzo14 | IS1634 | Azoarcus sp. | 34 | 5.1 | |
| ISThsp8 | IS1634 | Thiomonas sp. | 34 | 5.1 | |
| ISCARN23 | IS1634 | Metagenomic data from CARNOULES | 34 | 5.1 | |
| ISGdi13 | IS1182 | Gluconacetobacter diazotrophicus | 34 | 5.1 | |
| ISThsp1 | IS1182 | Thiomonas sp. | 34 | 5.1 | |
| ISLxc2 | IS481 | Leifsonia xyli | 34 | 5.1 | |
| ISRae1 | IS481 | Rhodococcus aetherivorans | 34 | 5.1 | |
| ISRhosp2 | IS701 | Rhodococcus sp. | 34 | 5.1 | |
| ISMca7 | IS5 | IS5 | Methylococcus capsulatus | 34 | 5.1 |
| ISSav2 | IS701 | Streptomyces avermitilis | 34 | 5.1 | |
| ISMfl1 | IS4 | IS4 | Mycobacterium flavescens | 34 | 5.1 |
| ISHch2 | IS4 | IS4 | Hahella chejuensis | 34 | 5.1 |
| ISAs5 | IS3 | IS51 | Aeromonas salmonicida | 34 | 5.1 |
| ISFsp1 | ISL3 | Frankia sp. | 34 | 5.1 | |
| ISAzo6 | IS1634 | Azoarcus sp. | 34 | 5.1 | |
| ISPst9 | ISL3 | Pseudomonas stutzeri | 34 | 5.1 | |
| ISMk1 | ISNCY | - | Mycobacterium kansasii | 34 | 5.1 |
| ISJp4 | IS5 | IS427 | Ralstonia eutropha | 34 | 5.1 |
| IS1602 | IS607 | Mycobacterium tuberculosis | 34 | 5.1 | |
| IS116 | IS110 | - | Streptomyces clavuligerus | 34 | 5.1 |
| IS1110 | IS110 | - | Mycobacterium avium | 34 | 5.1 |
| IS1081 | IS256 | - | Mycobacterium bovis | 34 | 5.1 |
>TnAs3
Length = 18735
Score = 50.1 bits (25), Expect = 9e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 10524 atctacgccgcaggcgactgcaccg 10548
|||||||||||||||||||||||||
Sbjct: 2889 atctacgccgcaggcgactgcaccg 2913
>IS931
Length = 1477
Score = 42.1 bits (21), Expect = 0.021
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 11882 cttcggggccttcttcttgcc 11902
|||||||||||||||||||||
Sbjct: 143 cttcggggccttcttcttgcc 123
>IS2001
Length = 1406
Score = 42.1 bits (21), Expect = 0.021
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 8479 ggagaaccggtcggccagctcgagc 8503
|||||||||||||||| ||||||||
Sbjct: 568 ggagaaccggtcggcctgctcgagc 544
Score = 36.2 bits (18), Expect = 1.3
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 3903 cgcgcagggtctcgagcc 3920
||||||||||||||||||
Sbjct: 1304 cgcgcagggtctcgagcc 1287
>ISNoc2
Length = 1472
Score = 40.1 bits (20), Expect = 0.083
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 4221 cggtcacgatgttgacgacg 4240
||||||||||||||||||||
Sbjct: 1149 cggtcacgatgttgacgacg 1168
>ISCARN14
Length = 1226
Score = 40.1 bits (20), Expect = 0.083
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 8190 cgaggtgacggatggcgaag 8209
||||||||||||||||||||
Sbjct: 59 cgaggtgacggatggcgaag 78
>ISHoc2
Length = 1715
Score = 38.2 bits (19), Expect = 0.33
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 7231 gcggagtcggcgcagcagg 7249
|||||||||||||||||||
Sbjct: 980 gcggagtcggcgcagcagg 998
>ISThsp12
Length = 2004
Score = 38.2 bits (19), Expect = 0.33
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 7712 tcggggtcgttggcgatgaccag 7734
|||||||||| ||||||||||||
Sbjct: 1261 tcggggtcgtgggcgatgaccag 1239
Score = 34.2 bits (17), Expect = 5.1
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 12648 agctcggcgtgctgcgc 12664
|||||||||||||||||
Sbjct: 550 agctcggcgtgctgcgc 566
>ISAs32
Length = 1232
Score = 36.2 bits (18), Expect = 1.3
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 5488 cgctgtcgccgagagcctcttt 5509
|||||||||||||||| |||||
Sbjct: 1013 cgctgtcgccgagagcttcttt 1034
>ISPa62
Length = 1382
Score = 36.2 bits (18), Expect = 1.3
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 11637 ttgatctcggccaggacg 11654
||||||||||||||||||
Sbjct: 623 ttgatctcggccaggacg 606
>ISTni2
Length = 3451
Score = 36.2 bits (18), Expect = 1.3
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 2253 ctcgcggtagaagtcgtcgaga 2274
|||||||||||||||| |||||
Sbjct: 2518 ctcgcggtagaagtcggcgaga 2497
>ISAzs13
Length = 1769
Score = 36.2 bits (18), Expect = 1.3
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 11478 cccgccgccgtccaggtc 11495
||||||||||||||||||
Sbjct: 757 cccgccgccgtccaggtc 774
>ISAzo38
Length = 894
Score = 36.2 bits (18), Expect = 1.3
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 5210 cagcatggcgaggtagga 5227
||||||||||||||||||
Sbjct: 839 cagcatggcgaggtagga 822
>IS1553
Length = 1406
Score = 36.2 bits (18), Expect = 1.3
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 11643 tcggccaggacggcgccc 11660
||||||||||||||||||
Sbjct: 1239 tcggccaggacggcgccc 1222
>ISLxc3
Length = 1511
Score = 36.2 bits (18), Expect = 1.3
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 12872 cagatccgggatctcctc 12889
||||||||||||||||||
Sbjct: 526 cagatccgggatctcctc 543
>ISRso15
Length = 1304
Score = 36.2 bits (18), Expect = 1.3
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 13093 gccccggcccgatccaga 13110
||||||||||||||||||
Sbjct: 645 gccccggcccgatccaga 628
>TnAs2
Length = 8650
Score = 34.2 bits (17), Expect = 5.1
Identities = 23/25 (92%)
Strand = Plus / Plus
Query: 10524 atctacgccgcaggcgactgcaccg 10548
|||||||| || |||||||||||||
Sbjct: 2859 atctacgcggccggcgactgcaccg 2883
>ISAs7
Length = 1232
Score = 34.2 bits (17), Expect = 5.1
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 5489 gctgtcgccgagagcctcttt 5509
||||||||||||||| |||||
Sbjct: 1014 gctgtcgccgagagcttcttt 1034
>ISIde1
Length = 1448
Score = 34.2 bits (17), Expect = 5.1
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 8055 gcacggcggcgatccgc 8071
|||||||||||||||||
Sbjct: 707 gcacggcggcgatccgc 723
>ISPa54
Length = 1159
Score = 34.2 bits (17), Expect = 5.1
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 10874 ggtcgcgctcgccgtcc 10890
|||||||||||||||||
Sbjct: 545 ggtcgcgctcgccgtcc 529
>ISMyo1
Length = 1472
Score = 34.2 bits (17), Expect = 5.1
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 13860 tggcccgcctcgggatcgacg 13880
||||||||||||| |||||||
Sbjct: 1142 tggcccgcctcggtatcgacg 1162
>ISSer2
Length = 1473
Score = 34.2 bits (17), Expect = 5.1
Identities = 23/25 (92%)
Strand = Plus / Minus
Query: 12838 aggccgtgaccgcctcgcgcaccgc 12862
||||||||||| ||||| |||||||
Sbjct: 601 aggccgtgacctcctcgagcaccgc 577
Score = 34.2 bits (17), Expect = 5.1
Identities = 23/25 (92%)
Strand = Plus / Minus
Query: 12935 cgccttgatcgccaccggcaacccg 12959
||||| ||||||| |||||||||||
Sbjct: 879 cgcctcgatcgcctccggcaacccg 855
>ISAmi2
Length = 942
Score = 34.2 bits (17), Expect = 5.1
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 6519 cggatcgccgccgaccg 6535
|||||||||||||||||
Sbjct: 490 cggatcgccgccgaccg 506
>ISAmi1
Length = 883
Score = 34.2 bits (17), Expect = 5.1
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 8485 ccggtcggccagctcgagccg 8505
|||||||||||| ||||||||
Sbjct: 219 ccggtcggccaggtcgagccg 199
>ISGau3
Length = 1253
Score = 34.2 bits (17), Expect = 5.1
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 14877 cgacgcacgcgccgaca 14893
|||||||||||||||||
Sbjct: 1106 cgacgcacgcgccgaca 1122
>ISGvi6
Length = 1662
Score = 34.2 bits (17), Expect = 5.1
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 14647 atcgcccacggcctcga 14663
|||||||||||||||||
Sbjct: 438 atcgcccacggcctcga 454
>ISFsp13
Length = 1724
Score = 34.2 bits (17), Expect = 5.1
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 6957 gtgcggtgagctgctcg 6973
|||||||||||||||||
Sbjct: 439 gtgcggtgagctgctcg 423
>ISMtsp5
Length = 1347
Score = 34.2 bits (17), Expect = 5.1
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 7870 cgcccgcacgaaggcgg 7886
|||||||||||||||||
Sbjct: 1097 cgcccgcacgaaggcgg 1081
>ISMpo6
Length = 1593
Score = 34.2 bits (17), Expect = 5.1
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 6265 tgcgcgtcgtcgacctg 6281
|||||||||||||||||
Sbjct: 161 tgcgcgtcgtcgacctg 177
>ISPfr7
Length = 1423
Score = 34.2 bits (17), Expect = 5.1
Identities = 23/25 (92%)
Strand = Plus / Minus
Query: 4721 tcggcgaggacggtgtcgtcggcgg 4745
||||||||||||| ||||| |||||
Sbjct: 546 tcggcgaggacggcgtcgttggcgg 522
>ISArsp6
Length = 26712
Score = 34.2 bits (17), Expect = 5.1
Identities = 26/29 (89%)
Strand = Plus / Plus
Query: 4323 cggtgttgccggtggccagggccggggcg 4351
|||||| | |||| |||||||||||||||
Sbjct: 4106 cggtgtcggcggtcgccagggccggggcg 4134
>ISStr1
Length = 1664
Score = 34.2 bits (17), Expect = 5.1
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 4194 ccaaggcctcgccggtg 4210
|||||||||||||||||
Sbjct: 688 ccaaggcctcgccggtg 672
>ISFsp15
Length = 1695
Score = 34.2 bits (17), Expect = 5.1
Identities = 29/33 (87%)
Strand = Plus / Plus
Query: 10019 cgccgccgacgtcatcctcgtcgccaccggcgc 10051
|||||||||| |||| |||||||||||||||
Sbjct: 733 cgccgccgaccacatcaccgtcgccaccggcgc 765
>ISFsp14
Length = 1696
Score = 34.2 bits (17), Expect = 5.1
Identities = 29/33 (87%)
Strand = Plus / Plus
Query: 10019 cgccgccgacgtcatcctcgtcgccaccggcgc 10051
|||||||||| |||| |||||||||||||||
Sbjct: 733 cgccgccgaccacatcaccgtcgccaccggcgc 765
>ISMex38
Length = 3841
Score = 34.2 bits (17), Expect = 5.1
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 9381 ggtgcgctcggcgatga 9397
|||||||||||||||||
Sbjct: 285 ggtgcgctcggcgatga 301
>ISMex8
Length = 2597
Score = 34.2 bits (17), Expect = 5.1
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 787 ggtcgcccgggagtgcg 803
|||||||||||||||||
Sbjct: 1724 ggtcgcccgggagtgcg 1740
>ISAzo17
Length = 2095
Score = 34.2 bits (17), Expect = 5.1
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 6516 cggcggatcgccgccga 6532
|||||||||||||||||
Sbjct: 146 cggcggatcgccgccga 162
>ISAzo15
Length = 2441
Score = 34.2 bits (17), Expect = 5.1
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 1454 ctcaagcgcctgcgctt 1470
|||||||||||||||||
Sbjct: 996 ctcaagcgcctgcgctt 1012
>ISAzo14
Length = 1925
Score = 34.2 bits (17), Expect = 5.1
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 12648 agctcggcgtgctgcgc 12664
|||||||||||||||||
Sbjct: 540 agctcggcgtgctgcgc 556
>ISThsp8
Length = 1929
Score = 34.2 bits (17), Expect = 5.1
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 12648 agctcggcgtgctgcgc 12664
|||||||||||||||||
Sbjct: 547 agctcggcgtgctgcgc 563
>ISCARN23
Length = 1907
Score = 34.2 bits (17), Expect = 5.1
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 12648 agctcggcgtgctgcgc 12664
|||||||||||||||||
Sbjct: 521 agctcggcgtgctgcgc 537
>ISGdi13
Length = 1452
Score = 34.2 bits (17), Expect = 5.1
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 13025 gggcgcgtccgccttcgtcgc 13045
||||||||||||| |||||||
Sbjct: 969 gggcgcgtccgccgtcgtcgc 949
>ISThsp1
Length = 1539
Score = 34.2 bits (17), Expect = 5.1
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 6504 gccgagatcgagcggcg 6520
|||||||||||||||||
Sbjct: 648 gccgagatcgagcggcg 664
>ISLxc2
Length = 1113
Score = 34.2 bits (17), Expect = 5.1
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 9652 tcggcgcccagctcggc 9668
|||||||||||||||||
Sbjct: 385 tcggcgcccagctcggc 401
>ISRae1
Length = 1111
Score = 34.2 bits (17), Expect = 5.1
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 10014 gagctcgccgccgacgtcatc 10034
|||||||||||||||| ||||
Sbjct: 391 gagctcgccgccgacggcatc 411
>ISRhosp2
Length = 1361
Score = 34.2 bits (17), Expect = 5.1
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 12640 cccggaccagctcggcg 12656
|||||||||||||||||
Sbjct: 1001 cccggaccagctcggcg 985
>ISMca7
Length = 1172
Score = 34.2 bits (17), Expect = 5.1
Identities = 23/25 (92%)
Strand = Plus / Minus
Query: 12605 gacgtagccggcctcgcggaggatc 12629
|||||||||||| |||| |||||||
Sbjct: 741 gacgtagccggcatcgccgaggatc 717
>ISSav2
Length = 1938
Score = 34.2 bits (17), Expect = 5.1
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 2701 cggtgaggtcgatggcg 2717
|||||||||||||||||
Sbjct: 1458 cggtgaggtcgatggcg 1442
>ISMfl1
Length = 1457
Score = 34.2 bits (17), Expect = 5.1
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 802 cgtcgaggatctcgccg 818
|||||||||||||||||
Sbjct: 798 cgtcgaggatctcgccg 814
>ISHch2
Length = 1633
Score = 34.2 bits (17), Expect = 5.1
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 2802 gaggtggccagcacctc 2818
|||||||||||||||||
Sbjct: 949 gaggtggccagcacctc 933
>ISAs5
Length = 1233
Score = 34.2 bits (17), Expect = 5.1
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 5489 gctgtcgccgagagcctcttt 5509
||||||||||||||| |||||
Sbjct: 1015 gctgtcgccgagagcttcttt 1035
>ISFsp1
Length = 1732
Score = 34.2 bits (17), Expect = 5.1
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 5833 tgaggtcctggacggcg 5849
|||||||||||||||||
Sbjct: 991 tgaggtcctggacggcg 975
>ISAzo6
Length = 1925
Score = 34.2 bits (17), Expect = 5.1
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 12648 agctcggcgtgctgcgc 12664
|||||||||||||||||
Sbjct: 540 agctcggcgtgctgcgc 556
Score = 34.2 bits (17), Expect = 5.1
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 5119 gccgcaccgcctcgagc 5135
|||||||||||||||||
Sbjct: 1016 gccgcaccgcctcgagc 1000
>ISPst9
Length = 2472
Score = 34.2 bits (17), Expect = 5.1
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 11884 tcggggccttcttcttg 11900
|||||||||||||||||
Sbjct: 2316 tcggggccttcttcttg 2300
>ISMk1
Length = 947
Score = 34.2 bits (17), Expect = 5.1
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 7534 cgcggcggcgatggcgc 7550
|||||||||||||||||
Sbjct: 484 cgcggcggcgatggcgc 500
>ISJp4
Length = 915
Score = 34.2 bits (17), Expect = 5.1
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 4442 gcgaggccggcgaactc 4458
|||||||||||||||||
Sbjct: 366 gcgaggccggcgaactc 382
>IS1602
Length = 2053
Score = 34.2 bits (17), Expect = 5.1
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 1210 tgaccgcctgggccacg 1226
|||||||||||||||||
Sbjct: 286 tgaccgcctgggccacg 302
>IS116
Length = 1421
Score = 34.2 bits (17), Expect = 5.1
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 6897 tcatcgcggtctgggcg 6913
|||||||||||||||||
Sbjct: 1239 tcatcgcggtctgggcg 1223
>IS1110
Length = 1462
Score = 34.2 bits (17), Expect = 5.1
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 3805 ctcggcgacgccggcgt 3821
|||||||||||||||||
Sbjct: 846 ctcggcgacgccggcgt 862
>IS1081
Length = 1435
Score = 34.2 bits (17), Expect = 5.1
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 12937 ccttgatcgccaccggc 12953
|||||||||||||||||
Sbjct: 676 ccttgatcgccaccggc 692
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_35_length_11624_cov_111.635_ID_5238
(11,624 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISFsp14 | IS1380 | Frankia sp. | 46 | 0.001 | |
| ISSlgl1 | IS256 | IS1249 | Slackia heliotrinireducens | 42 | 0.016 |
| ISPaes2 | IS5 | IS427 | Paracoccus aestuarii | 42 | 0.016 |
| ISFsp15 | IS1380 | Frankia sp. | 38 | 0.25 | |
| ISAnsp9 | ISAs1 | Anaeromyxobacter sp. | 38 | 0.25 | |
| ISMlu1 | IS256 | Micrococcus luteus | 38 | 0.25 | |
| ISSsp126 | IS5 | IS5 | Sphingomonas sp. | 38 | 0.25 |
| ISGsp5 | ISLre2 | Geobacillus sp. | 36 | 0.99 | |
| ISAzs26 | ISKra4 | ISAzba1 | Azospirillum sp. | 36 | 0.99 |
| ISBmu23 | IS5 | IS5 | Burkholderia multivorans | 36 | 0.99 |
| ISRjo1 | IS1380 | Rhodococcus jostii | 36 | 0.99 | |
| ISCARN34 | IS1380 | Metagenomic data from CARNOULES | 36 | 0.99 | |
| ISArsp2 | IS481 | Arthrobacter sp. | 36 | 0.99 | |
| ISMno3 | IS66 | ISBst12 | Methylobacterium nodulans | 36 | 0.99 |
| ISMxa1 | IS3 | IS3 | Myxococcus xanthus | 36 | 0.99 |
| IS1407 | IS256 | - | Mycobacterium celatum | 36 | 0.99 |
| ISMdi14B | IS110 | IS1111 | Methylobacterium dichloromethanicum DM4 | 34 | 3.9 |
| TnAs2 | Tn3 | Aeromonas salmonicida | 34 | 3.9 | |
| ISSm4 | ISL3 | Serratia marcescens | 34 | 3.9 | |
| ISFsp17 | ISKra4 | ISKra4 | Frankia sp. | 34 | 3.9 |
| ISMfu2 | ISKra4 | ISKra4 | Myxococcus fulvus | 34 | 3.9 |
| ISGxy1 | IS3 | IS150 | Gluconacetobacter xylinus | 34 | 3.9 |
| ISPa43 | Tn3 | Pseudomonas aeruginosa | 34 | 3.9 | |
| ISPa38 | Tn3 | Pseudomonas aeruginosa | 34 | 3.9 | |
| ISAzs23 | IS3 | IS3 | Azospirillum sp. | 34 | 3.9 |
| ISAzs17 | Tn3 | Azospirillum sp. | 34 | 3.9 | |
| ISAzs10 | IS5 | Azospirillum sp. | 34 | 3.9 | |
| ISAs12 | ISAs1 | Aeromonas salmonicida | 34 | 3.9 | |
| ISStu1 | IS5 | ISL2 | Streptomyces turgidiscabies | 34 | 3.9 |
| ISAmi2 | IS5 | ISL2 | Actinosynnema mirum | 34 | 3.9 |
| ISMtsp10 | IS1182 | Methylobacterium sp. | 34 | 3.9 | |
| ISHha2 | IS5 | Halorhodospira halophila | 34 | 3.9 | |
| ISMno5 | ISL3 | Methylobacterium nodulans | 34 | 3.9 | |
| ISBusp4 | IS1182 | Burkholderia sp. | 34 | 3.9 | |
| ISMdi14 | IS110 | IS1111 | Methylobacterium dichloromethanicum | 34 | 3.9 |
| ISMdi27 | IS21 | Methylobacterium dichloromethanicum | 34 | 3.9 | |
| ISMex11 | IS3 | IS407 | Methylobacterium extorquens | 34 | 3.9 |
| ISStma13 | IS3 | IS407 | Stenotrophomonas maltophilia | 34 | 3.9 |
| ISStma7 | IS110 | Stenotrophomonas maltophilia | 34 | 3.9 | |
| ISCARN61 | IS256 | Metagenomic data from CARNOULES | 34 | 3.9 | |
| ISAzo21 | IS66 | Azoarcus sp. | 34 | 3.9 | |
| ISShes12 | IS1634 | Shewanella sp. | 34 | 3.9 | |
| ISAli7 | IS256 | Azospirillum lipoferum | 34 | 3.9 | |
| ISGur8 | IS21 | Geobacter uraniumreducens | 34 | 3.9 | |
| ISXca1 | IS3 | IS407 | Xanthomonas campestris | 34 | 3.9 |
| ISXc8 | IS3 | IS3 | Xanthomonas campestris | 34 | 3.9 |
| ISAzo6 | IS1634 | Azoarcus sp. | 34 | 3.9 | |
| ISAzo4 | IS21 | Azoarcus sp. | 34 | 3.9 | |
| ISPpu12 | ISL3 | Pseudomonas putida | 34 | 3.9 | |
| ISRm13 | IS5 | IS5 | Sinorhizobium meliloti | 34 | 3.9 |
| IS469 | ISL3 | - | Streptomyces coelicolor | 34 | 3.9 |
| IS1389-B | IS3 | IS407 | Xanthomonas campestris | 34 | 3.9 |
| IS1141 | IS3 | IS3 | Mycobacterium intracellulare | 34 | 3.9 |
>ISFsp14
Length = 1696
Score = 46.1 bits (23), Expect = 0.001
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 1250 ccggttgccgtcgacgtcggtga 1272
|||||||||||||||||||||||
Sbjct: 1114 ccggttgccgtcgacgtcggtga 1092
>ISSlgl1
Length = 1341
Score = 42.1 bits (21), Expect = 0.016
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1817 acggcgtcgtgaccgacggcg 1837
|||||||||||||||||||||
Sbjct: 604 acggcgtcgtgaccgacggcg 624
>ISPaes2
Length = 841
Score = 42.1 bits (21), Expect = 0.016
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 7561 ccggcgcggcggcgctgctgg 7581
|||||||||||||||||||||
Sbjct: 517 ccggcgcggcggcgctgctgg 537
>ISFsp15
Length = 1695
Score = 38.2 bits (19), Expect = 0.25
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 1250 ccggttgccgtcgacgtcggtga 1272
|||||||||||||||||| ||||
Sbjct: 1114 ccggttgccgtcgacgtcagtga 1092
>ISAnsp9
Length = 1704
Score = 38.2 bits (19), Expect = 0.25
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 6758 ctcgcgaccgagctgctcg 6776
|||||||||||||||||||
Sbjct: 947 ctcgcgaccgagctgctcg 965
>ISMlu1
Length = 1413
Score = 38.2 bits (19), Expect = 0.25
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 4943 gacgccgacgcggtggtcg 4961
|||||||||||||||||||
Sbjct: 234 gacgccgacgcggtggtcg 252
>ISSsp126
Length = 1293
Score = 38.2 bits (19), Expect = 0.25
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 3759 aggtccgcgccgccgtgga 3777
|||||||||||||||||||
Sbjct: 992 aggtccgcgccgccgtgga 1010
>ISGsp5
Length = 1706
Score = 36.2 bits (18), Expect = 0.99
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 9683 gctggacagcgccatcggcacg 9704
|||| |||||||||||||||||
Sbjct: 1078 gctgaacagcgccatcggcacg 1099
>ISAzs26
Length = 2226
Score = 36.2 bits (18), Expect = 0.99
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 2561 cgatgtacgtggcgaact 2578
||||||||||||||||||
Sbjct: 1927 cgatgtacgtggcgaact 1910
>ISBmu23
Length = 1210
Score = 36.2 bits (18), Expect = 0.99
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 4632 acctcgtgaccgcggtcgagcg 4653
||||||||| ||||||||||||
Sbjct: 863 acctcgtgatcgcggtcgagcg 884
>ISRjo1
Length = 1967
Score = 36.2 bits (18), Expect = 0.99
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 6723 cggaggtcgccgagatcc 6740
||||||||||||||||||
Sbjct: 1156 cggaggtcgccgagatcc 1173
>ISCARN34
Length = 1714
Score = 36.2 bits (18), Expect = 0.99
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 4224 tcgatgatcgcctcggcg 4241
||||||||||||||||||
Sbjct: 1128 tcgatgatcgcctcggcg 1111
>ISArsp2
Length = 1373
Score = 36.2 bits (18), Expect = 0.99
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 9211 acgccctctgggacaccgagat 9232
|||| |||||||||||||||||
Sbjct: 1158 acgcgctctgggacaccgagat 1179
>ISMno3
Length = 1364
Score = 36.2 bits (18), Expect = 0.99
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 831 tcgagctgcccgaggtcg 848
||||||||||||||||||
Sbjct: 348 tcgagctgcccgaggtcg 365
>ISMxa1
Length = 1292
Score = 36.2 bits (18), Expect = 0.99
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 1698 gcaggcgctcgagttcggcgcg 1719
|||| |||||||||||||||||
Sbjct: 298 gcagccgctcgagttcggcgcg 277
>IS1407
Length = 1422
Score = 36.2 bits (18), Expect = 0.99
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 6162 gctcgacgaggccgtcga 6179
||||||||||||||||||
Sbjct: 519 gctcgacgaggccgtcga 536
>ISMdi14B
Length = 1315
Score = 34.2 bits (17), Expect = 3.9
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 6526 cgctcccgctcgggagc 6542
|||||||||||||||||
Sbjct: 1136 cgctcccgctcgggagc 1120
>TnAs2
Length = 8650
Score = 34.2 bits (17), Expect = 3.9
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 819 gcgagcacccggtcgagctgc 839
||||||||| |||||||||||
Sbjct: 5949 gcgagcacctggtcgagctgc 5969
>ISSm4
Length = 9109
Score = 34.2 bits (17), Expect = 3.9
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 3886 cgtcgagcttggtggcc 3902
|||||||||||||||||
Sbjct: 5167 cgtcgagcttggtggcc 5151
>ISFsp17
Length = 1693
Score = 34.2 bits (17), Expect = 3.9
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 2606 cctcgacgaagccggcggcga 2626
||||| |||||||||||||||
Sbjct: 1058 cctcgtcgaagccggcggcga 1038
>ISMfu2
Length = 1554
Score = 34.2 bits (17), Expect = 3.9
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 10803 ggtgaggcaggcggcgt 10819
|||||||||||||||||
Sbjct: 844 ggtgaggcaggcggcgt 828
>ISGxy1
Length = 1313
Score = 34.2 bits (17), Expect = 3.9
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 3988 cccgcaggcccatgatc 4004
|||||||||||||||||
Sbjct: 627 cccgcaggcccatgatc 611
>ISPa43
Length = 19903
Score = 34.2 bits (17), Expect = 3.9
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 4274 gccctgggtgccctcga 4290
|||||||||||||||||
Sbjct: 14241 gccctgggtgccctcga 14225
>ISPa38
Length = 6455
Score = 34.2 bits (17), Expect = 3.9
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 819 gcgagcacccggtcgagctgc 839
||||||||| |||||||||||
Sbjct: 3757 gcgagcacctggtcgagctgc 3777
>ISAzs23
Length = 1596
Score = 34.2 bits (17), Expect = 3.9
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 10459 tgctcgccgacctcggc 10475
|||||||||||||||||
Sbjct: 1171 tgctcgccgacctcggc 1187
>ISAzs17
Length = 7252
Score = 34.2 bits (17), Expect = 3.9
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 4872 tcgacatcgagcacctc 4888
|||||||||||||||||
Sbjct: 6634 tcgacatcgagcacctc 6650
>ISAzs10
Length = 1307
Score = 34.2 bits (17), Expect = 3.9
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 8484 ccgtcgatcccgccgga 8500
|||||||||||||||||
Sbjct: 244 ccgtcgatcccgccgga 260
>ISAs12
Length = 1438
Score = 34.2 bits (17), Expect = 3.9
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 10270 atggcctcggcgatctcggtc 10290
|||| ||||||||||||||||
Sbjct: 831 atggtctcggcgatctcggtc 811
>ISStu1
Length = 889
Score = 34.2 bits (17), Expect = 3.9
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 1496 ggcggtggtggtgccga 1512
|||||||||||||||||
Sbjct: 316 ggcggtggtggtgccga 300
>ISAmi2
Length = 942
Score = 34.2 bits (17), Expect = 3.9
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 2375 cgagatcggcgaaggtc 2391
|||||||||||||||||
Sbjct: 328 cgagatcggcgaaggtc 312
>ISMtsp10
Length = 1778
Score = 34.2 bits (17), Expect = 3.9
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 7376 cggcgcaggtggcgcgg 7392
|||||||||||||||||
Sbjct: 142 cggcgcaggtggcgcgg 158
>ISHha2
Length = 1339
Score = 34.2 bits (17), Expect = 3.9
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 8484 ccgtcgatcccgccgga 8500
|||||||||||||||||
Sbjct: 234 ccgtcgatcccgccgga 250
>ISMno5
Length = 1728
Score = 34.2 bits (17), Expect = 3.9
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 105 cagggggccggtcaggcgcgc 125
|||| ||||||||||||||||
Sbjct: 442 caggtggccggtcaggcgcgc 422
>ISBusp4
Length = 1633
Score = 34.2 bits (17), Expect = 3.9
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 3446 cgatggtcaccatgtcgctgg 3466
|||||| ||||||||||||||
Sbjct: 493 cgatggccaccatgtcgctgg 473
>ISMdi14
Length = 1316
Score = 34.2 bits (17), Expect = 3.9
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 6526 cgctcccgctcgggagc 6542
|||||||||||||||||
Sbjct: 1137 cgctcccgctcgggagc 1121
>ISMdi27
Length = 2476
Score = 34.2 bits (17), Expect = 3.9
Identities = 23/25 (92%)
Strand = Plus / Minus
Query: 959 cgcgtcgtagccgccgtggtagccg 983
||||||||||||||| | |||||||
Sbjct: 406 cgcgtcgtagccgccctcgtagccg 382
>ISMex11
Length = 1227
Score = 34.2 bits (17), Expect = 3.9
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 5747 tcaacgcccggctgcgcgacg 5767
|||||| ||||||||||||||
Sbjct: 1001 tcaacggccggctgcgcgacg 1021
>ISStma13
Length = 1216
Score = 34.2 bits (17), Expect = 3.9
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 2249 cgtcgcgcagccgtccg 2265
|||||||||||||||||
Sbjct: 1003 cgtcgcgcagccgtccg 987
>ISStma7
Length = 1223
Score = 34.2 bits (17), Expect = 3.9
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 5747 tcaacgcccggctgcgcgacg 5767
||||||||||| |||||||||
Sbjct: 1076 tcaacgcccgggtgcgcgacg 1096
>ISCARN61
Length = 1368
Score = 34.2 bits (17), Expect = 3.9
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 5291 cgatcacccgtctcgtc 5307
|||||||||||||||||
Sbjct: 1179 cgatcacccgtctcgtc 1195
>ISAzo21
Length = 2423
Score = 34.2 bits (17), Expect = 3.9
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 3956 ctcgatgccctcgagca 3972
|||||||||||||||||
Sbjct: 693 ctcgatgccctcgagca 677
>ISShes12
Length = 1721
Score = 34.2 bits (17), Expect = 3.9
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 2106 gatgggcaggccggcct 2122
|||||||||||||||||
Sbjct: 634 gatgggcaggccggcct 618
>ISAli7
Length = 1416
Score = 34.2 bits (17), Expect = 3.9
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 10608 ctcggcgacggcgcgca 10624
|||||||||||||||||
Sbjct: 231 ctcggcgacggcgcgca 215
>ISGur8
Length = 2775
Score = 34.2 bits (17), Expect = 3.9
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 7792 ctctcgacgactacaag 7808
|||||||||||||||||
Sbjct: 905 ctctcgacgactacaag 921
>ISXca1
Length = 1225
Score = 34.2 bits (17), Expect = 3.9
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 5710 cggttgctggccgaggc 5726
|||||||||||||||||
Sbjct: 265 cggttgctggccgaggc 281
>ISXc8
Length = 1227
Score = 34.2 bits (17), Expect = 3.9
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 9509 gacggtcctgccgagcg 9525
|||||||||||||||||
Sbjct: 855 gacggtcctgccgagcg 839
>ISAzo6
Length = 1925
Score = 34.2 bits (17), Expect = 3.9
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 828 cggtcgagctgcccgaggtcg 848
|||||| ||||||||||||||
Sbjct: 567 cggtcgcgctgcccgaggtcg 587
>ISAzo4
Length = 2757
Score = 34.2 bits (17), Expect = 3.9
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 2852 cggtgccgatcgtcgac 2868
|||||||||||||||||
Sbjct: 695 cggtgccgatcgtcgac 711
>ISPpu12
Length = 3372
Score = 34.2 bits (17), Expect = 3.9
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 2900 agcagaagctgccgaaa 2916
|||||||||||||||||
Sbjct: 938 agcagaagctgccgaaa 922
>ISRm13
Length = 1550
Score = 34.2 bits (17), Expect = 3.9
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 772 cgatgaccggctcgatg 788
|||||||||||||||||
Sbjct: 1344 cgatgaccggctcgatg 1328
>IS469
Length = 1647
Score = 34.2 bits (17), Expect = 3.9
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 2259 ccgtccgaggagctcgtggat 2279
|||||||||||| ||||||||
Sbjct: 923 ccgtccgaggagatcgtggat 903
>IS1389-B
Length = 1203
Score = 34.2 bits (17), Expect = 3.9
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 5747 tcaacgcccggctgcgcgacg 5767
|||||| ||||||||||||||
Sbjct: 981 tcaacggccggctgcgcgacg 1001
>IS1141
Length = 1588
Score = 34.2 bits (17), Expect = 3.9
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 10459 tgctcgccgacctcggc 10475
|||||||||||||||||
Sbjct: 1168 tgctcgccgacctcggc 1184
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_36_length_10066_cov_79.8644_ID_5240
(10,066 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISMdi25 | IS30 | Methylobacterium dichloromethanicum | 46 | 9e-04 | |
| ISAzs18 | IS66 | Azospirillum sp. | 38 | 0.22 | |
| ISFsp13 | ISAzo13 | Frankia sp. | 38 | 0.22 | |
| ISSsp5 | IS21 | Sphingomonas sp. | 38 | 0.22 | |
| ISLxx2 | IS110 | Leifsonia xyli | 38 | 0.22 | |
| ISHaar1 | IS200/IS605 | IS1341 | Halorubrum arcis | 36 | 0.86 |
| ISHje2 | IS200/IS605 | IS605 | Halalkalicoccus jeotgali | 36 | 0.86 |
| ISIde2 | IS21 | Ideonella dechloratans | 36 | 0.86 | |
| ISGvi7 | ISKra4 | ISMich2 | Gloeobacter violaceus | 36 | 0.86 |
| ISRme16 | IS5 | Ralstonia eutropha | 36 | 0.86 | |
| ISAnsp12 | IS66 | Anaeromyxobacter sp. | 36 | 0.86 | |
| ISCARN108 | IS66 | Metagenomic data from CARNOULES | 36 | 0.86 | |
| ISMysp1 | IS110 | Mycobacterium sp. | 36 | 0.86 | |
| ISBfun2 | IS110 | IS1111 | Burkholderia fungorum | 36 | 0.86 |
| ISBlo12 | IS607 | Bifidobacterium longum | 36 | 0.86 | |
| ISRsp1 | IS66 | - | Rhizobium sp. | 36 | 0.86 |
| ISRme1 | IS5 | - | Ralstonia metallidurans | 36 | 0.86 |
| IS2001 | ISL3 | - | Bifidobacterium lactis | 36 | 0.86 |
| ISHvo24 | IS200/IS605 | IS1341 | Haloferax volcanii | 34 | 3.4 |
| ISMyma10 | IS3 | IS51 | Mycobacterium marinum | 34 | 3.4 |
| ISPa53 | IS110 | IS1111 | Pseudomonas aeruginosa | 34 | 3.4 |
| ISTni2 | IS481 | Thioalkalivibrio nitratireducens | 34 | 3.4 | |
| ISHla6 | IS5 | Halorubrum lacusprofundi | 34 | 3.4 | |
| ISAzs15 | ISAs1 | Azospirillum sp. | 34 | 3.4 | |
| ISAzs10 | IS5 | Azospirillum sp. | 34 | 3.4 | |
| ISStsp8 | IS5 | ISL2 | Streptomyces sp. | 34 | 3.4 |
| ISXac4 | IS3 | IS407 | Xanthomonas axonopodis | 34 | 3.4 |
| ISNha7 | IS5 | Nitrobacter hamburgensis | 34 | 3.4 | |
| ISMno10 | IS1182 | Methylobacterium nodulans | 34 | 3.4 | |
| ISMtsp13 | IS256 | Methylobacterium sp. | 34 | 3.4 | |
| ISArsp6 | Tn3 | Arthrobacter sp. | 34 | 3.4 | |
| ISArsp4 | IS256 | Arthrobacter sp. | 34 | 3.4 | |
| ISMch8 | IS5 | IS5 | Methylobacterium chloromethanicum | 34 | 3.4 |
| ISBli4 | IS1380 | Brevibacterium linens | 34 | 3.4 | |
| ISAnsp10 | IS630 | Anaeromyxobacter sp. | 34 | 3.4 | |
| ISAzo26 | IS91 | Azoarcus sp. | 34 | 3.4 | |
| ISAzo21 | IS66 | Azoarcus sp. | 34 | 3.4 | |
| ISAzo19 | IS66 | Azoarcus sp. | 34 | 3.4 | |
| ISAzo15 | IS66 | Azoarcus sp. | 34 | 3.4 | |
| ISCARN3 | IS21 | Metagenomic data from CARNOULES | 34 | 3.4 | |
| ISApr7 | IS1595 | ISNwi1 | Alpha proteobacterium | 34 | 3.4 |
| ISAli10 | IS66 | Azospirillum lipoferum | 34 | 3.4 | |
| ISAli2 | IS630 | Azospirillum lipoferum | 34 | 3.4 | |
| ISLxc4 | IS30 | Leifsonia xyli | 34 | 3.4 | |
| ISSam1 | IS110 | Streptomyces ambofaciens | 34 | 3.4 | |
| ISEli1 | IS3 | IS407 | Erythrobacter litoralis | 34 | 3.4 |
| ISMca3 | IS3 | IS51 | Methylococcus capsulatus | 34 | 3.4 |
| ISTth2 | IS4 | IS10 | Thermus thermophilus | 34 | 3.4 |
| ISCef4 | IS4 | IS4 | Corynebacterium efficiens | 34 | 3.4 |
| ISOcsp1 | IS21 | Ochrobactrum sp. | 34 | 3.4 | |
| ISH19 | IS5 | ISH1 | Haloarcula marismortui | 34 | 3.4 |
| ISAzo3 | ISAs1 | Azoarcus sp. | 34 | 3.4 | |
| ISBlo1 | IS21 | Bifidobacterium longum | 34 | 3.4 | |
| ISXfu2 | IS5 | IS5 | Xanthomonas fuscans | 34 | 3.4 |
| ISRj2 | IS3 | IS150 | Bradyrhizobium japonicum | 34 | 3.4 |
| ISBf1 | IS21 | - | Bacteroides fragilis | 34 | 3.4 |
| IS4811 | IS5 | IS1031 | Streptomyces lividans | 34 | 3.4 |
| IS112 | IS5 | ISL2 | Streptomyces albus | 34 | 3.4 |
| IS110 | IS110 | - | Streptomyces coelicolor | 34 | 3.4 |
| IS1096 | ISL3 | - | Mycobacterium smegmatis | 34 | 3.4 |
>ISMdi25
Length = 1601
Score = 46.1 bits (23), Expect = 9e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 5963 ggcgatcgcgtcgcgcaccgtctcggc 5989
|||||||||||||||||||| ||||||
Sbjct: 991 ggcgatcgcgtcgcgcaccgcctcggc 965
>ISAzs18
Length = 2633
Score = 38.2 bits (19), Expect = 0.22
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 4135 gcggtcctcggcgggctgg 4153
|||||||||||||||||||
Sbjct: 2163 gcggtcctcggcgggctgg 2145
Score = 36.2 bits (18), Expect = 0.86
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 4290 ggcgcaggccgcggagtt 4307
||||||||||||||||||
Sbjct: 1026 ggcgcaggccgcggagtt 1043
>ISFsp13
Length = 1724
Score = 38.2 bits (19), Expect = 0.22
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 3608 ccgacctcgcccgcaggacccgcctgc 3634
||||||||||||||| |||| ||||||
Sbjct: 950 ccgacctcgcccgcacgaccggcctgc 976
>ISSsp5
Length = 2501
Score = 38.2 bits (19), Expect = 0.22
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 5251 gacgaggtgcttgacggcctcga 5273
|||||||||||||||||| ||||
Sbjct: 1482 gacgaggtgcttgacggcatcga 1460
>ISLxx2
Length = 1427
Score = 38.2 bits (19), Expect = 0.22
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 7645 gacgatctcgtcggtgagc 7663
|||||||||||||||||||
Sbjct: 963 gacgatctcgtcggtgagc 945
>ISHaar1
Length = 1590
Score = 36.2 bits (18), Expect = 0.86
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 3664 gtcgaggccatcgacggcgacc 3685
||||||||| ||||||||||||
Sbjct: 1150 gtcgaggccttcgacggcgacc 1129
>ISHje2
Length = 1837
Score = 36.2 bits (18), Expect = 0.86
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 8621 ccgcctgagccgcctgag 8638
||||||||||||||||||
Sbjct: 1112 ccgcctgagccgcctgag 1129
Score = 36.2 bits (18), Expect = 0.86
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 8630 ccgcctgagccgcctgag 8647
||||||||||||||||||
Sbjct: 1112 ccgcctgagccgcctgag 1129
>ISIde2
Length = 2529
Score = 36.2 bits (18), Expect = 0.86
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 7346 gtggtcggcgaggtgccg 7363
||||||||||||||||||
Sbjct: 250 gtggtcggcgaggtgccg 233
>ISGvi7
Length = 1220
Score = 36.2 bits (18), Expect = 0.86
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 5761 cctcggtgacggtcacgccggc 5782
||||||||||||||||| ||||
Sbjct: 751 cctcggtgacggtcacgacggc 772
>ISRme16
Length = 1331
Score = 36.2 bits (18), Expect = 0.86
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 7061 acgccgagcgcgaggccg 7078
||||||||||||||||||
Sbjct: 785 acgccgagcgcgaggccg 802
>ISAnsp12
Length = 2926
Score = 36.2 bits (18), Expect = 0.86
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 8694 ggccggcgaggttctcgc 8711
||||||||||||||||||
Sbjct: 2274 ggccggcgaggttctcgc 2257
>ISCARN108
Length = 2423
Score = 36.2 bits (18), Expect = 0.86
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 2370 ggtggctcggctggacgc 2387
||||||||||||||||||
Sbjct: 2402 ggtggctcggctggacgc 2419
Score = 34.2 bits (17), Expect = 3.4
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 2371 gtggctcggctggacgc 2387
|||||||||||||||||
Sbjct: 21 gtggctcggctggacgc 5
>ISMysp1
Length = 1461
Score = 36.2 bits (18), Expect = 0.86
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 4893 cgcctggtcggcgatcac 4910
||||||||||||||||||
Sbjct: 582 cgcctggtcggcgatcac 565
>ISBfun2
Length = 1125
Score = 36.2 bits (18), Expect = 0.86
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 8123 cgagcgccgggtgcgcgagtgg 8144
|||||||||| |||||||||||
Sbjct: 714 cgagcgccggatgcgcgagtgg 735
>ISBlo12
Length = 2003
Score = 36.2 bits (18), Expect = 0.86
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 3535 acggtcgggtcggccaac 3552
||||||||||||||||||
Sbjct: 410 acggtcgggtcggccaac 393
>ISRsp1
Length = 3481
Score = 36.2 bits (18), Expect = 0.86
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 2863 gtggtcgtggacggcagggtcg 2884
||||||||||||||||| ||||
Sbjct: 452 gtggtcgtggacggcagcgtcg 473
>ISRme1
Length = 1331
Score = 36.2 bits (18), Expect = 0.86
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 7061 acgccgagcgcgaggccg 7078
||||||||||||||||||
Sbjct: 785 acgccgagcgcgaggccg 802
>IS2001
Length = 1406
Score = 36.2 bits (18), Expect = 0.86
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 8006 gcgccgcacgaggggcac 8023
||||||||||||||||||
Sbjct: 249 gcgccgcacgaggggcac 232
>ISHvo24
Length = 1462
Score = 34.2 bits (17), Expect = 3.4
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 7317 cgacgccgacctcctcggcga 7337
|||||||||||||||| ||||
Sbjct: 208 cgacgccgacctcctccgcga 228
>ISMyma10
Length = 1352
Score = 34.2 bits (17), Expect = 3.4
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 5956 cgatgaaggcgatcgcg 5972
|||||||||||||||||
Sbjct: 1213 cgatgaaggcgatcgcg 1197
>ISPa53
Length = 1381
Score = 34.2 bits (17), Expect = 3.4
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 6960 aggcggcggtggcgctg 6976
|||||||||||||||||
Sbjct: 1013 aggcggcggtggcgctg 1029
>ISTni2
Length = 3451
Score = 34.2 bits (17), Expect = 3.4
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 5923 cggcgacggtgaggtcg 5939
|||||||||||||||||
Sbjct: 2474 cggcgacggtgaggtcg 2458
>ISHla6
Length = 1069
Score = 34.2 bits (17), Expect = 3.4
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 2960 cgctcggctggcacgac 2976
|||||||||||||||||
Sbjct: 696 cgctcggctggcacgac 712
>ISAzs15
Length = 1263
Score = 34.2 bits (17), Expect = 3.4
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 552 cgacgatgtccggctcg 568
|||||||||||||||||
Sbjct: 435 cgacgatgtccggctcg 419
>ISAzs10
Length = 1307
Score = 34.2 bits (17), Expect = 3.4
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 1572 gggcgccgacaaggcct 1588
|||||||||||||||||
Sbjct: 852 gggcgccgacaaggcct 868
>ISStsp8
Length = 881
Score = 34.2 bits (17), Expect = 3.4
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 7171 ccggtccgccgccgact 7187
|||||||||||||||||
Sbjct: 290 ccggtccgccgccgact 274
>ISXac4
Length = 1202
Score = 34.2 bits (17), Expect = 3.4
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 4217 gggtcaaggagctcgag 4233
|||||||||||||||||
Sbjct: 238 gggtcaaggagctcgag 254
>ISNha7
Length = 1302
Score = 34.2 bits (17), Expect = 3.4
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 1572 gggcgccgacaaggcct 1588
|||||||||||||||||
Sbjct: 856 gggcgccgacaaggcct 872
>ISMno10
Length = 1749
Score = 34.2 bits (17), Expect = 3.4
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 3598 acctgcgaccccgacct 3614
|||||||||||||||||
Sbjct: 995 acctgcgaccccgacct 1011
>ISMtsp13
Length = 1428
Score = 34.2 bits (17), Expect = 3.4
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 3654 cgagcggccggtcgagg 3670
|||||||||||||||||
Sbjct: 615 cgagcggccggtcgagg 599
>ISArsp6
Length = 26712
Score = 34.2 bits (17), Expect = 3.4
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 3878 caccgcagccgcctgcg 3894
|||||||||||||||||
Sbjct: 7041 caccgcagccgcctgcg 7025
>ISArsp4
Length = 1400
Score = 34.2 bits (17), Expect = 3.4
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 6955 cggtcaggcggcggtggcgct 6975
||||||||||||| |||||||
Sbjct: 443 cggtcaggcggcgctggcgct 423
>ISMch8
Length = 1494
Score = 34.2 bits (17), Expect = 3.4
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 1572 gggcgccgacaaggcct 1588
|||||||||||||||||
Sbjct: 863 gggcgccgacaaggcct 879
>ISBli4
Length = 1713
Score = 34.2 bits (17), Expect = 3.4
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 3548 ccaacctcaacgagcac 3564
|||||||||||||||||
Sbjct: 494 ccaacctcaacgagcac 510
>ISAnsp10
Length = 1185
Score = 34.2 bits (17), Expect = 3.4
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 7541 gcgacgacgagcgcgag 7557
|||||||||||||||||
Sbjct: 97 gcgacgacgagcgcgag 113
>ISAzo26
Length = 2604
Score = 34.2 bits (17), Expect = 3.4
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 4120 ctgctcgccgcgttcgc 4136
|||||||||||||||||
Sbjct: 2546 ctgctcgccgcgttcgc 2562
>ISAzo21
Length = 2423
Score = 34.2 bits (17), Expect = 3.4
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 4253 cgctcgggctcgaccga 4269
|||||||||||||||||
Sbjct: 1851 cgctcgggctcgaccga 1835
>ISAzo19
Length = 2423
Score = 34.2 bits (17), Expect = 3.4
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 4253 cgctcgggctcgaccga 4269
|||||||||||||||||
Sbjct: 1851 cgctcgggctcgaccga 1835
>ISAzo15
Length = 2441
Score = 34.2 bits (17), Expect = 3.4
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 3006 ggccgacgtggcccgcc 3022
|||||||||||||||||
Sbjct: 917 ggccgacgtggcccgcc 933
>ISCARN3
Length = 2070
Score = 34.2 bits (17), Expect = 3.4
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 9641 gccagtgccggacctcg 9657
|||||||||||||||||
Sbjct: 896 gccagtgccggacctcg 880
>ISApr7
Length = 3923
Score = 34.2 bits (17), Expect = 3.4
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 8839 agctgggcaccgttgcc 8855
|||||||||||||||||
Sbjct: 2842 agctgggcaccgttgcc 2858
>ISAli10
Length = 2584
Score = 34.2 bits (17), Expect = 3.4
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 6483 gcgtcatcgcgcggacg 6499
|||||||||||||||||
Sbjct: 62 gcgtcatcgcgcggacg 78
>ISAli2
Length = 1171
Score = 34.2 bits (17), Expect = 3.4
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 8008 gccgcacgaggggcacg 8024
|||||||||||||||||
Sbjct: 866 gccgcacgaggggcacg 882
>ISLxc4
Length = 1311
Score = 34.2 bits (17), Expect = 3.4
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 904 gccgagaccgtcgtcac 920
|||||||||||||||||
Sbjct: 291 gccgagaccgtcgtcac 275
>ISSam1
Length = 1489
Score = 34.2 bits (17), Expect = 3.4
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 7384 gcgggcgaggcggagga 7400
|||||||||||||||||
Sbjct: 1391 gcgggcgaggcggagga 1375
>ISEli1
Length = 1270
Score = 34.2 bits (17), Expect = 3.4
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 7407 cgagctcctggagccgccggg 7427
||||||||| |||||||||||
Sbjct: 244 cgagctccttgagccgccggg 224
>ISMca3
Length = 1320
Score = 34.2 bits (17), Expect = 3.4
Identities = 23/25 (92%)
Strand = Plus / Minus
Query: 9651 gacctcgcgctcgaggtcctcgagg 9675
|||||||||||| ||| ||||||||
Sbjct: 289 gacctcgcgctccagggcctcgagg 265
>ISTth2
Length = 1184
Score = 34.2 bits (17), Expect = 3.4
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 3608 ccgacctcgcccgcaggaccc 3628
|||||||||||||||| ||||
Sbjct: 206 ccgacctcgcccgcagaaccc 226
>ISCef4
Length = 1451
Score = 34.2 bits (17), Expect = 3.4
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 4134 cgcggtcctcggcgggctggg 4154
||||||| |||||||||||||
Sbjct: 599 cgcggtcatcggcgggctggg 619
>ISOcsp1
Length = 1955
Score = 34.2 bits (17), Expect = 3.4
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 9500 gcttggcgacgatctgg 9516
|||||||||||||||||
Sbjct: 1688 gcttggcgacgatctgg 1672
>ISH19
Length = 936
Score = 34.2 bits (17), Expect = 3.4
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 6394 cggccgcgtcgaggcggatct 6414
||||||||||||||| |||||
Sbjct: 304 cggccgcgtcgaggccgatct 284
>ISAzo3
Length = 1282
Score = 34.2 bits (17), Expect = 3.4
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 7764 gggtgggcgtgctggtg 7780
|||||||||||||||||
Sbjct: 407 gggtgggcgtgctggtg 423
>ISBlo1
Length = 2590
Score = 34.2 bits (17), Expect = 3.4
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 411 gcccttcgcgttgcgcc 427
|||||||||||||||||
Sbjct: 823 gcccttcgcgttgcgcc 807
>ISXfu2
Length = 1157
Score = 34.2 bits (17), Expect = 3.4
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 4547 tcgtcgaggcgacgttgatcg 4567
||||||| |||||||||||||
Sbjct: 481 tcgtcgatgcgacgttgatcg 501
>ISRj2
Length = 1364
Score = 34.2 bits (17), Expect = 3.4
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 7484 gtcgggagggcgtagcc 7500
|||||||||||||||||
Sbjct: 1268 gtcgggagggcgtagcc 1252
>ISBf1
Length = 2787
Score = 34.2 bits (17), Expect = 3.4
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 498 tggcggggagtccggag 514
|||||||||||||||||
Sbjct: 2132 tggcggggagtccggag 2116
>IS4811
Length = 5396
Score = 34.2 bits (17), Expect = 3.4
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 6365 ctcgccggggccgacctgctc 6385
||||| |||||||||||||||
Sbjct: 1967 ctcgcgggggccgacctgctc 1987
>IS112
Length = 883
Score = 34.2 bits (17), Expect = 3.4
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 7171 ccggtccgccgccgact 7187
|||||||||||||||||
Sbjct: 290 ccggtccgccgccgact 274
>IS110
Length = 1558
Score = 34.2 bits (17), Expect = 3.4
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 7384 gcgggcgaggcggagga 7400
|||||||||||||||||
Sbjct: 1398 gcgggcgaggcggagga 1382
>IS1096
Length = 2259
Score = 34.2 bits (17), Expect = 3.4
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 6369 ccggggccgacctgctc 6385
|||||||||||||||||
Sbjct: 1010 ccggggccgacctgctc 1026
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_37_length_6295_cov_105.309_ID_5242
(6295 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISPa33 | IS1380 | Pseudomonas aeruginosa | 38 | 0.14 | |
| ISMex38 | Tn3 | Methylobacterium extorquens | 38 | 0.14 | |
| ISCsa3 | IS110 | Caldicellulosiruptor saccharolyticus | 34 | 2.1 | |
| ISHvo19 | IS200/IS605 | IS1341 | Haloferax volcanii | 34 | 2.1 |
| ISGte1 | IS256 | Gordonia terrae | 34 | 2.1 | |
| ISAzs5 | ISAs1 | Azospirillum sp. | 34 | 2.1 | |
| ISFsp7 | IS5 | ISL2 | Frankia sp. | 34 | 2.1 |
| ISMno23 | IS91 | Methylobacterium nodulans | 34 | 2.1 | |
| ISMtsp6 | IS110 | IS1111 | Methylobacterium sp. | 34 | 2.1 |
| ISRfsp1 | IS66 | ISBst12 | Roseiflexus sp. | 34 | 2.1 |
| IS1406 | IS5 | Pseudomonas sp. | 34 | 2.1 | |
| IS1081 | IS256 | - | Mycobacterium bovis | 34 | 2.1 |
| TnXo19 | Tn3 | Xanthomonas oryzae | 32 | 8.4 | |
| ISHwa34 | IS200/IS605 | IS1341 | Haloquadratum walsbyi | 32 | 8.4 |
| ISHti4 | IS4 | IS50 | Halorhabdus tiamatea | 32 | 8.4 |
| ISSal1 | IS66 | Shewanella algae | 32 | 8.4 | |
| ISNpu15 | ISKra4 | ISMich2 | Nostoc punctiforme | 32 | 8.4 |
| ISAod1 | IS256 | IS1249 | Actinomyces odontolyticus | 32 | 8.4 |
| ISKra3 | ISAzo13 | Ktedonobacter racemifer | 32 | 8.4 | |
| ISPsy30 | Tn3 | Pseudomonas syringae | 32 | 8.4 | |
| ISAzs11 | ISAs1 | Azospirillum sp. | 32 | 8.4 | |
| ISStsp9 | IS5 | IS427 | Streptomyces sp. | 32 | 8.4 |
| ISEc35 | IS5 | IS903 | Escherichia coli | 32 | 8.4 |
| ISUnCu14 | IS66 | Uncultured bacterium | 32 | 8.4 | |
| ISMgi3 | IS1182 | Mycobacterium gilvum | 32 | 8.4 | |
| ISRosp6 | IS5 | Roseobacter sp. | 32 | 8.4 | |
| ISPna3 | IS5 | IS5 | Polaromonas naphthalenivorans | 32 | 8.4 |
| ISCph11 | ISAzo13 | Chlorobium phaeobacteroides | 32 | 8.4 | |
| ISMtsp17 | IS110 | IS1111 | Methylobacterium sp. | 32 | 8.4 |
| ISHwa2 | IS4 | IS50 | Haloquadratum walsbyi | 32 | 8.4 |
| ISPfr8 | ISL3 | Propionibacterium freudenreichii | 32 | 8.4 | |
| ISRgn2 | IS66 | Ruminococcus gnavus | 32 | 8.4 | |
| ISMdi9 | IS110 | IS1111 | Methylobacterium dichloromethanicum | 32 | 8.4 |
| ISMdi10 | IS110 | IS1111 | Methylobacterium dichloromethanicum | 32 | 8.4 |
| ISMdi6 | IS1182 | Methylobacterium dichloromethanicum | 32 | 8.4 | |
| ISStma5 | IS3 | IS3 | Stenotrophomonas maltophilia | 32 | 8.4 |
| ISMex22 | Tn3 | Methylobacterium extorquens | 32 | 8.4 | |
| ISCARN95 | IS21 | Metagenomic data from CARNOULES | 32 | 8.4 | |
| ISThsp9 | Tn3 | Thiomonas sp. | 32 | 8.4 | |
| ISAli12B | IS5 | IS427 | Azospirillum lipoferum | 32 | 8.4 |
| ISAli12A | IS5 | IS427 | Azospirillum lipoferum | 32 | 8.4 |
| ISAau4 | Tn3 | Arthrobacter aurescens | 32 | 8.4 | |
| ISRel3 | IS21 | Rhizobium etli | 32 | 8.4 | |
| ISSusp2 | IS3 | IS407 | Sulfitobacter sp. | 32 | 8.4 |
| ISCbe4 | ISLre2 | Caldicellulosiruptor bescii | 32 | 8.4 | |
| ISPa20 | IS3 | IS3 | Pseudomonas aeruginosa | 32 | 8.4 |
| ISBcen2 | IS110 | IS1111 | Burkholderia cenocepacia | 32 | 8.4 |
| ISPsy13 | IS3 | IS3 | Pseudomonas syringae | 32 | 8.4 |
| ISRso14 | IS3 | IS407 | Ralstonia solanacearum | 32 | 8.4 |
| IS999 | IS3 | IS51 | Mycobacterium avium | 32 | 8.4 |
>ISPa33
Length = 1561
Score = 38.2 bits (19), Expect = 0.14
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 5058 ctggccgccggctacgagg 5076
|||||||||||||||||||
Sbjct: 318 ctggccgccggctacgagg 336
>ISMex38
Length = 3841
Score = 38.2 bits (19), Expect = 0.14
Identities = 28/31 (90%)
Strand = Plus / Plus
Query: 4683 gaggagcgcgacgccgcgctcctggagcagg 4713
|||||| |||| ||||||||||| |||||||
Sbjct: 390 gaggagtgcgatgccgcgctccttgagcagg 420
>ISCsa3
Length = 1660
Score = 34.2 bits (17), Expect = 2.1
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 3163 agacggcggctgctgcg 3179
|||||||||||||||||
Sbjct: 1078 agacggcggctgctgcg 1094
>ISHvo19
Length = 1435
Score = 34.2 bits (17), Expect = 2.1
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 4746 ctcgttgggtacgtcga 4762
|||||||||||||||||
Sbjct: 186 ctcgttgggtacgtcga 170
>ISGte1
Length = 1503
Score = 34.2 bits (17), Expect = 2.1
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 1210 ctcgacgcggtcgatga 1226
|||||||||||||||||
Sbjct: 589 ctcgacgcggtcgatga 605
>ISAzs5
Length = 1333
Score = 34.2 bits (17), Expect = 2.1
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 1017 ggccgcgcacggcctcg 1033
|||||||||||||||||
Sbjct: 1028 ggccgcgcacggcctcg 1012
>ISFsp7
Length = 1041
Score = 34.2 bits (17), Expect = 2.1
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 6106 agcggcccgaccgggttgccc 6126
||||||||| |||||||||||
Sbjct: 754 agcggcccggccgggttgccc 734
>ISMno23
Length = 2271
Score = 34.2 bits (17), Expect = 2.1
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 2323 ggctggaacggcagcag 2339
|||||||||||||||||
Sbjct: 1242 ggctggaacggcagcag 1258
>ISMtsp6
Length = 1495
Score = 34.2 bits (17), Expect = 2.1
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 6098 tcgacggcagcggcccg 6114
|||||||||||||||||
Sbjct: 526 tcgacggcagcggcccg 510
>ISRfsp1
Length = 1503
Score = 34.2 bits (17), Expect = 2.1
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 1021 gcgcacggcctcgaccccgcg 1041
||||||||||||| |||||||
Sbjct: 892 gcgcacggcctcgcccccgcg 872
>IS1406
Length = 1214
Score = 34.2 bits (17), Expect = 2.1
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 5840 gcgcggacgccctgcga 5856
|||||||||||||||||
Sbjct: 238 gcgcggacgccctgcga 254
>IS1081
Length = 1435
Score = 34.2 bits (17), Expect = 2.1
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 5381 agagcagcccgcgcagc 5397
|||||||||||||||||
Sbjct: 213 agagcagcccgcgcagc 197
>TnXo19
Length = 18767
Score = 32.2 bits (16), Expect = 8.4
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 1125 cctccagctgcgccaggtcg 1144
||||||||||||||| ||||
Sbjct: 1436 cctccagctgcgccacgtcg 1417
Score = 32.2 bits (16), Expect = 8.4
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 1838 cgcgcagcgtgtcggc 1853
||||||||||||||||
Sbjct: 10828 cgcgcagcgtgtcggc 10843
>ISHwa34
Length = 1466
Score = 32.2 bits (16), Expect = 8.4
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 381 atcgcctacgacgaaggtga 400
|||||||||||||| |||||
Sbjct: 770 atcgcctacgacgacggtga 789
>ISHti4
Length = 1662
Score = 32.2 bits (16), Expect = 8.4
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 6264 cccaccctggtggcgg 6279
||||||||||||||||
Sbjct: 1410 cccaccctggtggcgg 1395
>ISSal1
Length = 2528
Score = 32.2 bits (16), Expect = 8.4
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 5382 gagcagcccgcgcagc 5397
||||||||||||||||
Sbjct: 432 gagcagcccgcgcagc 417
>ISNpu15
Length = 1218
Score = 32.2 bits (16), Expect = 8.4
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 3085 cgtcatggccatcgcc 3100
||||||||||||||||
Sbjct: 778 cgtcatggccatcgcc 763
>ISAod1
Length = 1334
Score = 32.2 bits (16), Expect = 8.4
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 2724 gaactcggcgtgcaggtagc 2743
|||||||| |||||||||||
Sbjct: 1132 gaactcggtgtgcaggtagc 1113
>ISKra3
Length = 1287
Score = 32.2 bits (16), Expect = 8.4
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 5043 ctgctccaggtcttcc 5058
||||||||||||||||
Sbjct: 334 ctgctccaggtcttcc 319
>ISPsy30
Length = 5167
Score = 32.2 bits (16), Expect = 8.4
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 4689 cgcgacgccgcgctcctgga 4708
||||||| ||||||||||||
Sbjct: 1909 cgcgacgacgcgctcctgga 1890
>ISAzs11
Length = 1224
Score = 32.2 bits (16), Expect = 8.4
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 3375 cgcgcccattggtcga 3390
||||||||||||||||
Sbjct: 989 cgcgcccattggtcga 1004
>ISStsp9
Length = 956
Score = 32.2 bits (16), Expect = 8.4
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 1575 gccggcgtccagggcg 1590
||||||||||||||||
Sbjct: 648 gccggcgtccagggcg 633
>ISEc35
Length = 1051
Score = 32.2 bits (16), Expect = 8.4
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 5463 ggccgccgagggcgag 5478
||||||||||||||||
Sbjct: 204 ggccgccgagggcgag 219
>ISUnCu14
Length = 2442
Score = 32.2 bits (16), Expect = 8.4
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 1879 gcctcggaggcgcgca 1894
||||||||||||||||
Sbjct: 945 gcctcggaggcgcgca 960
>ISMgi3
Length = 1770
Score = 32.2 bits (16), Expect = 8.4
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 3604 cgatcgcgatgacgtg 3619
||||||||||||||||
Sbjct: 1151 cgatcgcgatgacgtg 1136
Score = 32.2 bits (16), Expect = 8.4
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 2967 acttcaacgcgctgcc 2982
||||||||||||||||
Sbjct: 1377 acttcaacgcgctgcc 1392
>ISRosp6
Length = 1357
Score = 32.2 bits (16), Expect = 8.4
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 2673 atcgaggctggcgagt 2688
||||||||||||||||
Sbjct: 205 atcgaggctggcgagt 190
>ISPna3
Length = 1425
Score = 32.2 bits (16), Expect = 8.4
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 521 aagccgccagcacctg 536
||||||||||||||||
Sbjct: 626 aagccgccagcacctg 641
>ISCph11
Length = 1309
Score = 32.2 bits (16), Expect = 8.4
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 1549 aggatttgcgcgtccc 1564
||||||||||||||||
Sbjct: 752 aggatttgcgcgtccc 737
>ISMtsp17
Length = 1230
Score = 32.2 bits (16), Expect = 8.4
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 1889 cgcgcagggcgttgat 1904
||||||||||||||||
Sbjct: 604 cgcgcagggcgttgat 589
>ISHwa2
Length = 1668
Score = 32.2 bits (16), Expect = 8.4
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 6264 cccaccctggtggcgg 6279
||||||||||||||||
Sbjct: 1416 cccaccctggtggcgg 1401
>ISPfr8
Length = 1436
Score = 32.2 bits (16), Expect = 8.4
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 5397 cgcccagaccctcagc 5412
||||||||||||||||
Sbjct: 522 cgcccagaccctcagc 507
>ISRgn2
Length = 2745
Score = 32.2 bits (16), Expect = 8.4
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 779 cacttcgccttggatc 794
||||||||||||||||
Sbjct: 682 cacttcgccttggatc 667
>ISMdi9
Length = 1399
Score = 32.2 bits (16), Expect = 8.4
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 3452 ggcgctgatcgccgtc 3467
||||||||||||||||
Sbjct: 784 ggcgctgatcgccgtc 799
>ISMdi10
Length = 1186
Score = 32.2 bits (16), Expect = 8.4
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 2088 gccgcgcacgccgtgc 2103
||||||||||||||||
Sbjct: 443 gccgcgcacgccgtgc 458
>ISMdi6
Length = 1466
Score = 32.2 bits (16), Expect = 8.4
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 3486 gccgccaaggccgcgc 3501
||||||||||||||||
Sbjct: 699 gccgccaaggccgcgc 714
>ISStma5
Length = 1228
Score = 32.2 bits (16), Expect = 8.4
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 213 accctgcaggccatcg 228
||||||||||||||||
Sbjct: 630 accctgcaggccatcg 615
>ISMex22
Length = 3864
Score = 32.2 bits (16), Expect = 8.4
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 926 cgccgcaacggcctcg 941
||||||||||||||||
Sbjct: 3511 cgccgcaacggcctcg 3526
>ISCARN95
Length = 2610
Score = 32.2 bits (16), Expect = 8.4
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 1158 tgacggcaaccgggcg 1173
||||||||||||||||
Sbjct: 683 tgacggcaaccgggcg 698
>ISThsp9
Length = 6215
Score = 32.2 bits (16), Expect = 8.4
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 1015 caggccgcgcacggcctcga 1034
|||||||||||||| |||||
Sbjct: 2556 caggccgcgcacggtctcga 2537
>ISAli12B
Length = 844
Score = 32.2 bits (16), Expect = 8.4
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 1208 tgctcgacgcggtcga 1223
||||||||||||||||
Sbjct: 548 tgctcgacgcggtcga 563
>ISAli12A
Length = 845
Score = 32.2 bits (16), Expect = 8.4
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 1208 tgctcgacgcggtcga 1223
||||||||||||||||
Sbjct: 549 tgctcgacgcggtcga 564
>ISAau4
Length = 3898
Score = 32.2 bits (16), Expect = 8.4
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 5382 gagcagcccgcgcagc 5397
||||||||||||||||
Sbjct: 689 gagcagcccgcgcagc 674
>ISRel3
Length = 2308
Score = 32.2 bits (16), Expect = 8.4
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 3842 cgatcgatgacgccgc 3857
||||||||||||||||
Sbjct: 1240 cgatcgatgacgccgc 1255
>ISSusp2
Length = 1202
Score = 32.2 bits (16), Expect = 8.4
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 1533 gtcggcgtgccgggcg 1548
||||||||||||||||
Sbjct: 403 gtcggcgtgccgggcg 418
>ISCbe4
Length = 1610
Score = 32.2 bits (16), Expect = 8.4
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 676 cctcttggtagaagag 691
||||||||||||||||
Sbjct: 47 cctcttggtagaagag 62
>ISPa20
Length = 1246
Score = 32.2 bits (16), Expect = 8.4
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 1618 tgcgggctgatgtgcc 1633
||||||||||||||||
Sbjct: 1188 tgcgggctgatgtgcc 1173
>ISBcen2
Length = 1363
Score = 32.2 bits (16), Expect = 8.4
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 5030 ggcgtcggtcgggctg 5045
||||||||||||||||
Sbjct: 803 ggcgtcggtcgggctg 818
>ISPsy13
Length = 1232
Score = 32.2 bits (16), Expect = 8.4
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 835 ccgagtggatacccgc 850
||||||||||||||||
Sbjct: 1059 ccgagtggatacccgc 1074
>ISRso14
Length = 1234
Score = 32.2 bits (16), Expect = 8.4
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 2305 gcggtcgacatcgtcg 2320
||||||||||||||||
Sbjct: 465 gcggtcgacatcgtcg 450
>IS999
Length = 1347
Score = 32.2 bits (16), Expect = 8.4
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 178 gcgccgatctcagcga 193
||||||||||||||||
Sbjct: 1045 gcgccgatctcagcga 1030
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_38_length_5718_cov_64.6527_ID_5244
(5718 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISPfr2 | ISL3 | Propionibacterium freudenreichii | 80 | 4e-14 | |
| ISPfr4 | ISL3 | Propionibacterium freudenreichii | 78 | 1e-13 | |
| ISPfr3 | ISL3 | Propionibacterium freudenreichii | 76 | 6e-13 | |
| ISAar42 | ISL3 | Arthrobacter arilaitensis | 68 | 1e-10 | |
| IS1096 | ISL3 | - | Mycobacterium smegmatis | 68 | 1e-10 |
| ISPfr6 | ISL3 | Propionibacterium freudenreichii | 58 | 1e-07 | |
| ISPfr1 | ISL3 | Propionibacterium freudenreichii | 52 | 8e-06 | |
| ISPfr18 | ISL3 | Propionibacterium freudenreichii | 48 | 1e-04 | |
| ISPfr8 | ISL3 | Propionibacterium freudenreichii | 42 | 0.008 | |
| ISPfr7 | ISL3 | Propionibacterium freudenreichii | 42 | 0.008 | |
| ISHoc2 | ISKra4 | ISKra4 | Haliangium ochraceum | 36 | 0.49 |
| ISAar30 | ISL3 | Arthrobacter arilaitensis | 36 | 0.49 | |
| ISNpe26 | IS200/IS605 | IS1341 | Natrinema pellirubrum | 34 | 1.9 |
| ISMno23 | IS91 | Methylobacterium nodulans | 34 | 1.9 | |
| ISApr7 | IS1595 | ISNwi1 | Alpha proteobacterium | 34 | 1.9 |
| ISFsp5 | IS4 | IS4 | Frankia sp. | 34 | 1.9 |
| ISAtu2 | IS5 | IS5 | Agrobacterium tumefaciens | 34 | 1.9 |
| ISAli15 | IS66 | Azospirillum lipoferum | 34 | 1.9 | |
| ISBli3 | ISL3 | - | Brevibacterium linens | 34 | 1.9 |
| TnXo19 | Tn3 | Xanthomonas oryzae | 32 | 7.6 | |
| ISRsp12 | Tn3 | Rhizhobium sp. | 32 | 7.6 | |
| ISMic1 | ISKra4 | ISMich2 | Microcoleus sp. | 32 | 7.6 |
| ISRba8 | IS5 | IS427 | Rhodopirellula baltica | 32 | 7.6 |
| ISStsp6 | IS5 | ISL2 | Streptomyces sp | 32 | 7.6 |
| ISPlma1 | ISNCY | ISDol1 | Planctomyces maris | 32 | 7.6 |
| ISMtsp17 | IS110 | IS1111 | Methylobacterium sp. | 32 | 7.6 |
| ISAar39 | ISL3 | Arthrobacter arilaitensis | 32 | 7.6 | |
| ISShsp2 | IS1182 | Sphingomonas sp. | 32 | 7.6 | |
| ISMdi14 | IS110 | IS1111 | Methylobacterium dichloromethanicum | 32 | 7.6 |
| ISAzo33 | IS630 | Azoarcus sp. | 32 | 7.6 | |
| ISBj5_B | IS5 | IS5 | Bradyrhizobium japonicum | 32 | 7.6 |
| ISMrsp4 | IS66 | ISBst12 | Marinobacter sp. | 32 | 7.6 |
| ISCmi3 | IS30 | Clavibacter michiganensis | 32 | 7.6 | |
| ISSpo4 | IS5 | IS903 | Silicibacter pomeroyi | 32 | 7.6 |
| ISRasp1 | IS3 | IS3 | Ralstonia sp. | 32 | 7.6 |
| ISRsp6 | IS4 | IS4Sa | Rhizobium sp. | 32 | 7.6 |
| ISRm16 | IS4 | IS4Sa | Sinorhizobium meliloti | 32 | 7.6 |
| ISBlo2 | IS21 | Bifidobacterium longum | 32 | 7.6 | |
| ISPsy11 | IS3 | IS3 | Pseudomonas syringae | 32 | 7.6 |
| ISSco2 | IS481 | Streptomyces coelicolor | 32 | 7.6 | |
| ISPa42 | Tn3 | Pseudomonas aeruginosa | 32 | 7.6 | |
| IS116 | IS110 | - | Streptomyces clavuligerus | 32 | 7.6 |
>ISPfr2
Length = 1731
Score = 79.8 bits (40), Expect = 4e-14
Identities = 103/124 (83%)
Strand = Plus / Plus
Query: 570 ggcaccagcaccggacccactgaagcgctcaacgagcgcctggagcacctgcgcggctcc 629
|||||||||| ||| || || || |||||||||| || || || |||||||||||||||
Sbjct: 1298 ggcaccagcaacgggccgaccgaggcgctcaacggacggctcgaacacctgcgcggctcc 1357
Query: 630 gccctcggcttccgaaccttgacctactacatcgccagatcactgctcgagactggcggc 689
|| ||||| ||||| | | ||||| ||||||||||| || ||||||||||| ||||||
Sbjct: 1358 gcactcgggttccgcaacctgaccaactacatcgcccgaagcctgctcgagaccggcggc 1417
Query: 690 ttca 693
||||
Sbjct: 1418 ttca 1421
Score = 52.0 bits (26), Expect = 8e-06
Identities = 62/74 (83%)
Strand = Plus / Plus
Query: 570 ggcaccagcaccggacccactgaagcgctcaacgagcgcctggagcacctgcgcggctcc 629
|||||||||| ||| ||||| |||||| |||||| || || || ||||| |||||| |
Sbjct: 1520 ggcaccagcaacggccccaccgaagcgatcaacggccgactcgaacacctccgcggcacg 1579
Query: 630 gccctcggcttccg 643
||||||||||||||
Sbjct: 1580 gccctcggcttccg 1593
Score = 38.2 bits (19), Expect = 0.12
Identities = 32/35 (91%), Gaps = 1/35 (2%)
Strand = Plus / Plus
Query: 376 gaggccacctgggg-gtctaccagcggatgatcgc 409
||||| |||||||| ||||||||||| ||||||||
Sbjct: 1103 gaggcgacctggggtgtctaccagcgcatgatcgc 1137
>ISPfr4
Length = 1415
Score = 77.8 bits (39), Expect = 1e-13
Identities = 63/71 (88%)
Strand = Plus / Plus
Query: 612 gagcacctgcgcggctccgccctcggcttccgaaccttgacctactacatcgccagatca 671
|||||||||||||||||||| ||||| ||||| | | ||||| |||||||||||||||
Sbjct: 1302 gagcacctgcgcggctccgcgctcgggttccgcaacctgaccagctacatcgccagatcg 1361
Query: 672 ctgctcgagac 682
|||||||||||
Sbjct: 1362 ctgctcgagac 1372
Score = 44.1 bits (22), Expect = 0.002
Identities = 35/38 (92%), Gaps = 1/38 (2%)
Strand = Plus / Plus
Query: 376 gaggccacctgggg-gtctaccagcggatgatcgctgc 412
||||| |||||||| ||||||||| |||||||||||||
Sbjct: 1065 gaggcgacctggggcgtctaccagaggatgatcgctgc 1102
>ISPfr3
Length = 1457
Score = 75.8 bits (38), Expect = 6e-13
Identities = 71/82 (86%)
Strand = Plus / Plus
Query: 612 gagcacctgcgcggctccgccctcggcttccgaaccttgacctactacatcgccagatca 671
||||||||||||||||| || || || ||||| | | ||||| ||||||||||||||||
Sbjct: 1344 gagcacctgcgcggctcggcgctggggttccgcaacctgaccaactacatcgccagatcc 1403
Query: 672 ctgctcgagactggcggcttca 693
||||||||||| ||||| ||||
Sbjct: 1404 ctgctcgagaccggcgggttca 1425
Score = 32.2 bits (16), Expect = 7.6
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 390 gtctaccagcggatgatcgc 409
||||||||||| ||||||||
Sbjct: 1122 gtctaccagcgcatgatcgc 1141
Score = 32.2 bits (16), Expect = 7.6
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 4000 tcagctcgcggccgtg 4015
||||||||||||||||
Sbjct: 1182 tcagctcgcggccgtg 1167
>ISAar42
Length = 1443
Score = 67.9 bits (34), Expect = 1e-10
Identities = 91/110 (82%)
Strand = Plus / Plus
Query: 570 ggcaccagcaccggacccactgaagcgctcaacgagcgcctggagcacctgcgcggctcc 629
|||||||||| ||| || || || ||| |||||| ||||| || ||||| |||||||||
Sbjct: 1279 ggcaccagcaacggcccgaccgaggcgatcaacggccgcctcgaacacctccgcggctcc 1338
Query: 630 gccctcggcttccgaaccttgacctactacatcgccagatcactgctcga 679
|| ||||||||||| | | | ||| ||||||||||||| || ||||||||
Sbjct: 1339 gcgctcggcttccgcaacctcacccactacatcgccaggtcgctgctcga 1388
>IS1096
Length = 2259
Score = 67.9 bits (34), Expect = 1e-10
Identities = 85/102 (83%)
Strand = Plus / Plus
Query: 591 gaagcgctcaacgagcgcctggagcacctgcgcggctccgccctcggcttccgaaccttg 650
|||||| |||||| ||||| || ||||||||||| |||||||| |||||||| | | |
Sbjct: 1303 gaagcgatcaacggccgcctcgaacacctgcgcggatccgccctgggcttccgcaacctc 1362
Query: 651 acctactacatcgccagatcactgctcgagactggcggcttc 692
||| ||||||||||| | || ||||||||||| || ||||||
Sbjct: 1363 accaactacatcgcccggtccctgctcgagaccggaggcttc 1404
>ISPfr6
Length = 1436
Score = 58.0 bits (29), Expect = 1e-07
Identities = 113/141 (80%)
Strand = Plus / Plus
Query: 570 ggcaccagcaccggacccactgaagcgctcaacgagcgcctggagcacctgcgcggctcc 629
|||||||||| ||| ||||| || ||| |||| | ||||| |||||||| ||||| ||
Sbjct: 1281 ggcaccagcaacggtcccacagaggcgatcaatggccgcctcgagcacctccgcggatca 1340
Query: 630 gccctcggcttccgaaccttgacctactacatcgccagatcactgctcgagactggcggc 689
|||||||||||||| | | | ||| |||| |||||||||| || ||||| || |||||
Sbjct: 1341 gccctcggcttccgcaacctcacccactatgtcgccagatccctcctcgaaaccggcggg 1400
Query: 690 ttcaaaccgtcgctacaccgt 710
|||| ||| ||||||||||
Sbjct: 1401 ttcagacctcagctacaccgt 1421
>ISPfr1
Length = 1427
Score = 52.0 bits (26), Expect = 8e-06
Identities = 62/74 (83%)
Strand = Plus / Plus
Query: 570 ggcaccagcaccggacccactgaagcgctcaacgagcgcctggagcacctgcgcggctcc 629
|||||||||| ||| ||||| |||||| |||||| || || || ||||| |||||| |
Sbjct: 1272 ggcaccagcaacggccccaccgaagcgatcaacggccgactcgaacacctccgcggcacg 1331
Query: 630 gccctcggcttccg 643
||||||||||||||
Sbjct: 1332 gccctcggcttccg 1345
>ISPfr18
Length = 1437
Score = 48.1 bits (24), Expect = 1e-04
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 612 gagcacctgcgcggctccgccctcggcttccg 643
|||||||| ||||| |||||||||||||||||
Sbjct: 1314 gagcaccttcgcggttccgccctcggcttccg 1345
>ISPfr8
Length = 1436
Score = 42.1 bits (21), Expect = 0.008
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 609 ctggagcacctgcgcggctccgccctcggcttccgaa 645
||||| |||||||||||||| ||| | ||||||||||
Sbjct: 1320 ctggaacacctgcgcggctcagccttgggcttccgaa 1356
Score = 32.2 bits (16), Expect = 7.6
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 370 ggggtggaggccacctgggg 389
|||||||| |||||||||||
Sbjct: 1080 ggggtggaagccacctgggg 1099
>ISPfr7
Length = 1423
Score = 42.1 bits (21), Expect = 0.008
Identities = 54/65 (83%)
Strand = Plus / Plus
Query: 615 cacctgcgcggctccgccctcggcttccgaaccttgacctactacatcgccagatcactg 674
||||| || ||| |||| ||||||||||| | | | ||| ||||||||||| |||||||
Sbjct: 1313 cacctccgaggcaccgctctcggcttccgcaacctcacccactacatcgcccgatcacta 1372
Query: 675 ctcga 679
|||||
Sbjct: 1373 ctcga 1377
>ISHoc2
Length = 1715
Score = 36.2 bits (18), Expect = 0.49
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 245 gaccgcccgctctttcgtggcg 266
||||||||||||||||| ||||
Sbjct: 343 gaccgcccgctctttcgcggcg 322
>ISAar30
Length = 1435
Score = 36.2 bits (18), Expect = 0.49
Identities = 33/38 (86%)
Strand = Plus / Plus
Query: 606 cgcctggagcacctgcgcggctccgccctcggcttccg 643
||||| ||||||||||| ||| ||||||||||||||
Sbjct: 1316 cgcctcgagcacctgcgtggcctggccctcggcttccg 1353
>ISNpe26
Length = 1468
Score = 34.2 bits (17), Expect = 1.9
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 339 catcctcctgttcgtcg 355
|||||||||||||||||
Sbjct: 661 catcctcctgttcgtcg 645
>ISMno23
Length = 2271
Score = 34.2 bits (17), Expect = 1.9
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 3965 ctgctgccgttccagcc 3981
|||||||||||||||||
Sbjct: 1258 ctgctgccgttccagcc 1242
>ISApr7
Length = 3923
Score = 34.2 bits (17), Expect = 1.9
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 29 gcccattttcagcccggaacg 49
|||||||||||| ||||||||
Sbjct: 2583 gcccattttcaggccggaacg 2603
>ISFsp5
Length = 1617
Score = 34.2 bits (17), Expect = 1.9
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 3889 tgcggtggcggcgagcggggt 3909
||||||||||||| |||||||
Sbjct: 1488 tgcggtggcggcgggcggggt 1468
>ISAtu2
Length = 1353
Score = 34.2 bits (17), Expect = 1.9
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 5413 cgtcgtcgccgacatgc 5429
|||||||||||||||||
Sbjct: 759 cgtcgtcgccgacatgc 775
>ISAli15
Length = 2658
Score = 34.2 bits (17), Expect = 1.9
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 4745 gcgcagatcctggcccg 4761
|||||||||||||||||
Sbjct: 1692 gcgcagatcctggcccg 1708
>ISBli3
Length = 1398
Score = 34.2 bits (17), Expect = 1.9
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 5123 ggtgttcaagactccat 5139
|||||||||||||||||
Sbjct: 77 ggtgttcaagactccat 93
>TnXo19
Length = 18767
Score = 32.2 bits (16), Expect = 7.6
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 4451 gccgacacgctgcgcg 4466
||||||||||||||||
Sbjct: 10843 gccgacacgctgcgcg 10828
>ISRsp12
Length = 3701
Score = 32.2 bits (16), Expect = 7.6
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 3147 cgccgagttccgcccg 3162
||||||||||||||||
Sbjct: 1447 cgccgagttccgcccg 1432
>ISMic1
Length = 1773
Score = 32.2 bits (16), Expect = 7.6
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 5240 gtgatggacacgatgg 5255
||||||||||||||||
Sbjct: 772 gtgatggacacgatgg 787
>ISRba8
Length = 929
Score = 32.2 bits (16), Expect = 7.6
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 4934 gcaagggcggtcgccc 4949
||||||||||||||||
Sbjct: 189 gcaagggcggtcgccc 204
>ISStsp6
Length = 1476
Score = 32.2 bits (16), Expect = 7.6
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 4609 gatcgaccggcgcgacgtct 4628
||||||||||| ||||||||
Sbjct: 479 gatcgaccggcccgacgtct 498
>ISPlma1
Length = 1790
Score = 32.2 bits (16), Expect = 7.6
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 5454 aaccgatctccgaacg 5469
||||||||||||||||
Sbjct: 1480 aaccgatctccgaacg 1465
>ISMtsp17
Length = 1230
Score = 32.2 bits (16), Expect = 7.6
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 4400 atcaacgccctgcgcg 4415
||||||||||||||||
Sbjct: 589 atcaacgccctgcgcg 604
>ISAar39
Length = 1433
Score = 32.2 bits (16), Expect = 7.6
Identities = 29/32 (90%), Gaps = 1/32 (3%)
Strand = Plus / Plus
Query: 373 gtggaggccacctggggg-tctaccagcggat 403
|||||||| |||||||| |||||||||||||
Sbjct: 1080 gtggaggcgacctggggcatctaccagcggat 1111
>ISShsp2
Length = 1526
Score = 32.2 bits (16), Expect = 7.6
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 612 gagcacctgcgcggct 627
||||||||||||||||
Sbjct: 201 gagcacctgcgcggct 216
>ISMdi14
Length = 1316
Score = 32.2 bits (16), Expect = 7.6
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 370 ggggtggaggccacct 385
||||||||||||||||
Sbjct: 177 ggggtggaggccacct 162
>ISAzo33
Length = 1100
Score = 32.2 bits (16), Expect = 7.6
Identities = 22/24 (91%)
Strand = Plus / Plus
Query: 3122 tgaaggctcgggcggtgcggaggt 3145
||||||||||| ||||||| ||||
Sbjct: 719 tgaaggctcggtcggtgcgaaggt 742
>ISBj5_B
Length = 1524
Score = 32.2 bits (16), Expect = 7.6
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 4643 cgcatcgcgaaggccgccgc 4662
|||||||| |||||||||||
Sbjct: 734 cgcatcgccaaggccgccgc 753
>ISMrsp4
Length = 1725
Score = 32.2 bits (16), Expect = 7.6
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 3036 aaccgctccagcaggt 3051
||||||||||||||||
Sbjct: 1422 aaccgctccagcaggt 1407
>ISCmi3
Length = 1459
Score = 32.2 bits (16), Expect = 7.6
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 5597 cacccgccgcagaccc 5612
||||||||||||||||
Sbjct: 854 cacccgccgcagaccc 869
>ISSpo4
Length = 1092
Score = 32.2 bits (16), Expect = 7.6
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 3040 gctccagcaggtctgg 3055
||||||||||||||||
Sbjct: 649 gctccagcaggtctgg 634
>ISRasp1
Length = 1275
Score = 32.2 bits (16), Expect = 7.6
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 5569 cgttcgcaagctcatg 5584
||||||||||||||||
Sbjct: 602 cgttcgcaagctcatg 617
>ISRsp6
Length = 1277
Score = 32.2 bits (16), Expect = 7.6
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 5096 gccccgtcagacgggg 5111
||||||||||||||||
Sbjct: 51 gccccgtcagacgggg 66
>ISRm16
Length = 1299
Score = 32.2 bits (16), Expect = 7.6
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 5022 gcggcgatgcgcaaca 5037
||||||||||||||||
Sbjct: 1113 gcggcgatgcgcaaca 1098
>ISBlo2
Length = 2455
Score = 32.2 bits (16), Expect = 7.6
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 3578 ccgggccggcagcccggcgc 3597
|||| |||||||||||||||
Sbjct: 949 ccggtccggcagcccggcgc 930
>ISPsy11
Length = 1313
Score = 32.2 bits (16), Expect = 7.6
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 361 gagcaggttggggtgg 376
||||||||||||||||
Sbjct: 769 gagcaggttggggtgg 754
>ISSco2
Length = 1964
Score = 32.2 bits (16), Expect = 7.6
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 5311 ggacggcgagttcgtc 5326
||||||||||||||||
Sbjct: 1842 ggacggcgagttcgtc 1827
>ISPa42
Length = 16941
Score = 32.2 bits (16), Expect = 7.6
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 4917 tcggagccggccagcg 4932
||||||||||||||||
Sbjct: 15089 tcggagccggccagcg 15074
>IS116
Length = 1421
Score = 32.2 bits (16), Expect = 7.6
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 5317 cgagttcgtcgccaccgtcg 5336
|||||||||||||| |||||
Sbjct: 1058 cgagttcgtcgccatcgtcg 1077
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_39_length_5447_cov_70.0575_ID_5246
(5447 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISNhu4 | IS200/IS605 | IS1341 | Natrialba hulunbeirensis | 36 | 0.46 |
| ISSm4 | ISL3 | Serratia marcescens | 34 | 1.8 | |
| ISCARN81 | IS3 | IS3 | Metagenomic data from CARNOULES | 34 | 1.8 |
| IS21 | IS21 | - | Pseudomonas aeruginosa | 34 | 1.8 |
| ISBdi2 | IS1380 | Bradyrhizobium diazoefficiens | 32 | 7.2 | |
| ISAfe13 | ISKra4 | ISAzba1 | Acidithiobacillus ferrivorans | 32 | 7.2 |
| ISOrsp1 | IS256 | IS1249 | Oribacterium sp. | 32 | 7.2 |
| ISPbe2 | IS5 | IS427 | Paracoccus bengalensis | 32 | 7.2 |
| ISVsp5 | IS4 | IS4Sa | Verrucomicrobium spinosum | 32 | 7.2 |
| ISCARN45 | IS256 | Metagenomic data from CARNOULES | 32 | 7.2 | |
| ISGdi17 | IS21 | Gluconacetobacter diazotrophicus | 32 | 7.2 | |
| ISCph4 | IS66 | Chlorobium phaeobacteroides | 32 | 7.2 | |
| ISSpn4 | IS3 | IS150 | Streptococcus pneumoniae | 32 | 7.2 |
| ISPssy | IS5 | IS5 | Pseudomonas syringae | 32 | 7.2 |
| ISBj1 | IS1380 | - | Bradyrhizobium japonicum | 32 | 7.2 |
>ISNhu4
Length = 1474
Score = 36.2 bits (18), Expect = 0.46
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 3793 gcttcgggtgttaccgac 3810
||||||||||||||||||
Sbjct: 1343 gcttcgggtgttaccgac 1360
>ISSm4
Length = 9109
Score = 34.2 bits (17), Expect = 1.8
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 4529 gcgcattccaccgctac 4545
|||||||||||||||||
Sbjct: 6077 gcgcattccaccgctac 6093
>ISCARN81
Length = 1406
Score = 34.2 bits (17), Expect = 1.8
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 2043 tcaggtgtcacggccgagcag 2063
|||||||| ||||||||||||
Sbjct: 209 tcaggtgtaacggccgagcag 229
>IS21
Length = 2131
Score = 34.2 bits (17), Expect = 1.8
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 4092 atcacgtgctggcaaca 4108
|||||||||||||||||
Sbjct: 1902 atcacgtgctggcaaca 1918
>ISBdi2
Length = 1622
Score = 32.2 bits (16), Expect = 7.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 592 cgagccgacatcgagg 607
||||||||||||||||
Sbjct: 1108 cgagccgacatcgagg 1093
>ISAfe13
Length = 2868
Score = 32.2 bits (16), Expect = 7.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 3393 ggcccggcaaccaccg 3408
||||||||||||||||
Sbjct: 1983 ggcccggcaaccaccg 1998
>ISOrsp1
Length = 1345
Score = 32.2 bits (16), Expect = 7.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 4305 tcaattcctttgagtt 4320
||||||||||||||||
Sbjct: 335 tcaattcctttgagtt 320
>ISPbe2
Length = 851
Score = 32.2 bits (16), Expect = 7.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 4822 caggcttccgcccatt 4837
||||||||||||||||
Sbjct: 161 caggcttccgcccatt 146
>ISVsp5
Length = 1426
Score = 32.2 bits (16), Expect = 7.2
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 5316 caccacaacggcagccagcc 5335
|||||| |||||||||||||
Sbjct: 159 caccaccacggcagccagcc 178
>ISCARN45
Length = 1430
Score = 32.2 bits (16), Expect = 7.2
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 2929 cctctatgccgagccattca 2948
|||||||||||||| |||||
Sbjct: 1289 cctctatgccgagcgattca 1308
>ISGdi17
Length = 2482
Score = 32.2 bits (16), Expect = 7.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 701 gccaccgccggatcac 716
||||||||||||||||
Sbjct: 143 gccaccgccggatcac 128
>ISCph4
Length = 2385
Score = 32.2 bits (16), Expect = 7.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 630 ggactcttgggcaaga 645
||||||||||||||||
Sbjct: 2037 ggactcttgggcaaga 2022
>ISSpn4
Length = 1438
Score = 32.2 bits (16), Expect = 7.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 2248 tctgggctgtttccct 2263
||||||||||||||||
Sbjct: 1214 tctgggctgtttccct 1199
>ISPssy
Length = 1188
Score = 32.2 bits (16), Expect = 7.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 5360 ggcatcgatttttgac 5375
||||||||||||||||
Sbjct: 1173 ggcatcgatttttgac 1158
>ISBj1
Length = 2071
Score = 32.2 bits (16), Expect = 7.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 592 cgagccgacatcgagg 607
||||||||||||||||
Sbjct: 1439 cgagccgacatcgagg 1424
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_40_length_4829_cov_110.777_ID_5248
(4829 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISPme2 | IS5 | IS427 | Paracoccus methylutens | 38 | 0.10 |
| ISMra5 | IS5 | IS427 | Methylobacterium radiotolerans | 38 | 0.10 |
| ISEc14 | IS3 | IS51 | Escherichia coli | 38 | 0.10 |
| IS1650 | IS5 | IS427 | Streptomyces coelicolor | 38 | 0.10 |
| ISPa43 | Tn3 | Pseudomonas aeruginosa | 36 | 0.41 | |
| ISMgi3 | IS1182 | Mycobacterium gilvum | 36 | 0.41 | |
| ISMra2 | IS5 | IS427 | Methylobacterium radiotolerans | 36 | 0.41 |
| ISPa11 | IS110 | IS1111 | Pseudomonas aeruginosa | 36 | 0.41 |
| ISMt1 | IS5 | IS427 | Mycobacterium tuberculosis | 36 | 0.41 |
| ISGeob1 | IS5 | ISL2 | Geodermatophilus obscurus | 34 | 1.6 |
| ISMtsp19 | IS701 | Methylobacterium sp. | 34 | 1.6 | |
| ISAzba1 | ISKra4 | ISAzba1 | Azospirillum brasilense | 34 | 1.6 |
| ISAar37 | IS3 | IS3 | Arthrobacter arilaitensis | 34 | 1.6 |
| ISNml1 | IS1380 | Nakamurella multipartita | 34 | 1.6 | |
| ISAnsp5 | IS21 | Anaeromyxobacter sp. | 34 | 1.6 | |
| ISSav5 | IS481 | Streptomyces avermitilis | 34 | 1.6 | |
| ISAzo12 | IS21 | Azoarcus sp. | 34 | 1.6 | |
| ISArsp2 | IS481 | Arthrobacter sp. | 34 | 1.6 | |
| ISArsp1 | IS481 | Arthrobacter sp. | 34 | 1.6 | |
| ISRm4 | IS5 | IS1031 | Rhizobium meliloti | 34 | 1.6 |
| ISPsp3 | IS5 | IS5 | Pseudomonas sp. | 34 | 1.6 |
| IS511 | IS3 | IS407 | Caulobacter crescentus | 34 | 1.6 |
| TnXo19 | Tn3 | Xanthomonas oryzae | 32 | 6.4 | |
| ISPa62 | IS110 | IS1111 | Pseudomonas aeruginosa | 32 | 6.4 |
| ISHko3 | IS200/IS605 | Halorubrum kocurii | 32 | 6.4 | |
| ISBj2 | IS5 | IS427 | Bradyrhizobium japonicum | 32 | 6.4 |
| ISH36 | IS200/IS605 | Halobacterium salinarum | 32 | 6.4 | |
| ISFsp17 | ISKra4 | ISKra4 | Frankia sp. | 32 | 6.4 |
| ISSlgl1 | IS256 | IS1249 | Slackia heliotrinireducens | 32 | 6.4 |
| ISGsi1 | IS256 | IS1249 | Gordonia sihwensis | 32 | 6.4 |
| ISKpn15 | IS66 | ISBst12 | Klebsiella pneumonia | 32 | 6.4 |
| ISPfe2 | IS1634 | Paracoccus ferrooxidans | 32 | 6.4 | |
| ISAzs17 | Tn3 | Azospirillum sp. | 32 | 6.4 | |
| ISStsp5 | IS5 | ISL2 | Streptomyces sp. | 32 | 6.4 |
| ISMtsp5 | IS3 | IS2 | Methylobacterium sp. | 32 | 6.4 |
| ISMno23 | IS91 | Methylobacterium nodulans | 32 | 6.4 | |
| ISMpo8 | IS5 | IS427 | Methylobacterium populi | 32 | 6.4 |
| ISMno5 | ISL3 | Methylobacterium nodulans | 32 | 6.4 | |
| ISPam4 | IS5 | IS427 | Paracoccus aminophilus | 32 | 6.4 |
| ISPfr15 | IS481 | Propionibacterium freudenreichii | 32 | 6.4 | |
| ISAar35 | IS481 | Arthrobacter arilaitensis | 32 | 6.4 | |
| ISAar34 | ISL3 | Arthrobacter arilaitensis | 32 | 6.4 | |
| ISMav7 | IS1380 | Mycobacterium avium | 32 | 6.4 | |
| ISMyma7 | IS1380 | - | Mycobacterium marinum | 32 | 6.4 |
| ISAar6 | IS256 | Arthrobacter arilaitensis | 32 | 6.4 | |
| ISMex25 | IS6 | Methylobacterium extorquens | 32 | 6.4 | |
| ISStma3 | IS481 | Stenotrophomonas maltophilia | 32 | 6.4 | |
| ISAzo14 | IS1634 | Azoarcus sp. | 32 | 6.4 | |
| ISCARN3 | IS21 | Metagenomic data from CARNOULES | 32 | 6.4 | |
| ISAli10 | IS66 | Azospirillum lipoferum | 32 | 6.4 | |
| ISStau2 | IS66 | ISBst12 | Stigmatella aurantiaca | 32 | 6.4 |
| ISMsm3 | IS1380 | Mycobacterium smegmatis | 32 | 6.4 | |
| ISAzvi12 | IS110 | IS1111 | Azotobacter vinelandii | 32 | 6.4 |
| ISSst1 | IS3 | IS407 | Sagittula stellata | 32 | 6.4 |
| ISOba1 | IS3 | IS407 | Oceanicola batsensis | 32 | 6.4 |
| ISPpu20 | IS1182 | Pseudomonas putida | 32 | 6.4 | |
| ISCc1 | IS5 | IS427 | Caulobacter crescentus | 32 | 6.4 |
| ISPsy14 | IS21 | Pseudomonas syringae | 32 | 6.4 | |
| ISPpu14 | IS66 | Pseudomonas putida | 32 | 6.4 | |
| ISRm4-3 | IS5 | IS1031 | Sinorhizobium meliloti | 32 | 6.4 |
| ISPs1 | IS5 | IS427 | Pseudomonas syringae | 32 | 6.4 |
| ISMt3 | IS21 | - | Mycobacterium tuberculosis | 32 | 6.4 |
| ISMbo1 | IS21 | - | Mycobacterium bovis | 32 | 6.4 |
| ISBugl1 | IS3 | IS2 | Burkholderia glumae | 32 | 6.4 |
| IS1417 | IS3 | IS2 | Burkholderia glumae | 32 | 6.4 |
>ISPme2
Length = 851
Score = 38.2 bits (19), Expect = 0.10
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 4809 ttgtcgtagcgggtggcga 4827
|||||||||||||||||||
Sbjct: 776 ttgtcgtagcgggtggcga 758
>ISMra5
Length = 832
Score = 38.2 bits (19), Expect = 0.10
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 4811 gtcgtagcgggtggcgatg 4829
|||||||||||||||||||
Sbjct: 759 gtcgtagcgggtggcgatg 741
>ISEc14
Length = 1271
Score = 38.2 bits (19), Expect = 0.10
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 1004 caccgagcatgagacggcgtggc 1026
||||||||||||| |||||||||
Sbjct: 1016 caccgagcatgagccggcgtggc 1038
>IS1650
Length = 898
Score = 38.2 bits (19), Expect = 0.10
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 4807 gtttgtcgtagcgggtggc 4825
|||||||||||||||||||
Sbjct: 819 gtttgtcgtagcgggtggc 801
>ISPa43
Length = 19903
Score = 36.2 bits (18), Expect = 0.41
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 562 gatggccagcatggccac 579
||||||||||||||||||
Sbjct: 11956 gatggccagcatggccac 11939
Score = 32.2 bits (16), Expect = 6.4
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 2517 gcagcgcctgcaccgc 2532
||||||||||||||||
Sbjct: 13645 gcagcgcctgcaccgc 13660
>ISMgi3
Length = 1770
Score = 36.2 bits (18), Expect = 0.41
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 4148 cagccaaccggcgccgcc 4165
||||||||||||||||||
Sbjct: 412 cagccaaccggcgccgcc 395
>ISMra2
Length = 905
Score = 36.2 bits (18), Expect = 0.41
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 4812 tcgtagcgggtggcgatg 4829
||||||||||||||||||
Sbjct: 826 tcgtagcgggtggcgatg 809
>ISPa11
Length = 1372
Score = 36.2 bits (18), Expect = 0.41
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 4288 gcccaagcgctgctgtccgccc 4309
||||||||||||||| ||||||
Sbjct: 875 gcccaagcgctgctgcccgccc 854
>ISMt1
Length = 969
Score = 36.2 bits (18), Expect = 0.41
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 4808 tttgtcgtagcgggtggcgatg 4829
||||||||||||||| ||||||
Sbjct: 883 tttgtcgtagcgggttgcgatg 862
>ISGeob1
Length = 1020
Score = 34.2 bits (17), Expect = 1.6
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 1447 ggtgctggcgccgatgc 1463
|||||||||||||||||
Sbjct: 936 ggtgctggcgccgatgc 920
>ISMtsp19
Length = 1486
Score = 34.2 bits (17), Expect = 1.6
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 944 gagcaaggccatccgcg 960
|||||||||||||||||
Sbjct: 829 gagcaaggccatccgcg 813
>ISAzba1
Length = 1465
Score = 34.2 bits (17), Expect = 1.6
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 1538 ggcgccgacctggagcg 1554
|||||||||||||||||
Sbjct: 579 ggcgccgacctggagcg 563
>ISAar37
Length = 1309
Score = 34.2 bits (17), Expect = 1.6
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 99 ctcaggccgcgagagcc 115
|||||||||||||||||
Sbjct: 1260 ctcaggccgcgagagcc 1244
>ISNml1
Length = 1636
Score = 34.2 bits (17), Expect = 1.6
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 4349 gcgacctgcgcgacctg 4365
|||||||||||||||||
Sbjct: 1132 gcgacctgcgcgacctg 1148
>ISAnsp5
Length = 2192
Score = 34.2 bits (17), Expect = 1.6
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 983 gcgggacctcgcggcga 999
|||||||||||||||||
Sbjct: 152 gcgggacctcgcggcga 168
>ISSav5
Length = 1953
Score = 34.2 bits (17), Expect = 1.6
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 2067 cctcggccaggtgcgcggtga 2087
||||||||||||| |||||||
Sbjct: 1783 cctcggccaggtgggcggtga 1763
>ISAzo12
Length = 3075
Score = 34.2 bits (17), Expect = 1.6
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 4200 cggcgccgccaccctcg 4216
|||||||||||||||||
Sbjct: 2468 cggcgccgccaccctcg 2484
>ISArsp2
Length = 1373
Score = 34.2 bits (17), Expect = 1.6
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 3257 ccgcgcacggggtaccg 3273
|||||||||||||||||
Sbjct: 672 ccgcgcacggggtaccg 688
>ISArsp1
Length = 1077
Score = 34.2 bits (17), Expect = 1.6
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 2526 gcaccgcgccctgggac 2542
|||||||||||||||||
Sbjct: 587 gcaccgcgccctgggac 603
>ISRm4
Length = 933
Score = 34.2 bits (17), Expect = 1.6
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 3667 caggccatctgtgacgg 3683
|||||||||||||||||
Sbjct: 627 caggccatctgtgacgg 611
>ISPsp3
Length = 1190
Score = 34.2 bits (17), Expect = 1.6
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 3847 gtgttcttcgagcaggt 3863
|||||||||||||||||
Sbjct: 400 gtgttcttcgagcaggt 384
>IS511
Length = 1266
Score = 34.2 bits (17), Expect = 1.6
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 1039 ccgggtgacgtcgtcga 1055
|||||||||||||||||
Sbjct: 759 ccgggtgacgtcgtcga 743
>TnXo19
Length = 18767
Score = 32.2 bits (16), Expect = 6.4
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 1416 gcggacgcgcatgcagccgc 1435
|||||||||||||| |||||
Sbjct: 822 gcggacgcgcatgcggccgc 841
>ISPa62
Length = 1382
Score = 32.2 bits (16), Expect = 6.4
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 2194 gcagatccgcaccagc 2209
||||||||||||||||
Sbjct: 1053 gcagatccgcaccagc 1038
>ISHko3
Length = 1862
Score = 32.2 bits (16), Expect = 6.4
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 2227 ggcggcggcggcgtgg 2242
||||||||||||||||
Sbjct: 1478 ggcggcggcggcgtgg 1493
>ISBj2
Length = 830
Score = 32.2 bits (16), Expect = 6.4
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 3086 tcgaggtcgagtcgatcgac 3105
||||||||||||||| ||||
Sbjct: 356 tcgaggtcgagtcgagcgac 337
>ISH36
Length = 1978
Score = 32.2 bits (16), Expect = 6.4
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 786 tcggcctgctccgccg 801
||||||||||||||||
Sbjct: 16 tcggcctgctccgccg 1
>ISFsp17
Length = 1693
Score = 32.2 bits (16), Expect = 6.4
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 2885 cccgcggacgcggtgc 2900
||||||||||||||||
Sbjct: 497 cccgcggacgcggtgc 512
>ISSlgl1
Length = 1341
Score = 32.2 bits (16), Expect = 6.4
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 3228 gttcgtcgacggcctg 3243
||||||||||||||||
Sbjct: 464 gttcgtcgacggcctg 479
>ISGsi1
Length = 1310
Score = 32.2 bits (16), Expect = 6.4
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 4400 tcacccgaggtcaggc 4415
||||||||||||||||
Sbjct: 60 tcacccgaggtcaggc 45
>ISKpn15
Length = 1534
Score = 32.2 bits (16), Expect = 6.4
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 732 acatcgccgcgagcgg 747
||||||||||||||||
Sbjct: 332 acatcgccgcgagcgg 347
>ISPfe2
Length = 1884
Score = 32.2 bits (16), Expect = 6.4
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 3680 acgggctgaccgagga 3695
||||||||||||||||
Sbjct: 1102 acgggctgaccgagga 1117
>ISAzs17
Length = 7252
Score = 32.2 bits (16), Expect = 6.4
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 4232 ccgccttcaccgccac 4247
||||||||||||||||
Sbjct: 3276 ccgccttcaccgccac 3261
>ISStsp5
Length = 885
Score = 32.2 bits (16), Expect = 6.4
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 4606 gccgaccgtgcctacc 4621
||||||||||||||||
Sbjct: 638 gccgaccgtgcctacc 653
>ISMtsp5
Length = 1347
Score = 32.2 bits (16), Expect = 6.4
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 2657 tggctgccggtgggcg 2672
||||||||||||||||
Sbjct: 1269 tggctgccggtgggcg 1254
>ISMno23
Length = 2271
Score = 32.2 bits (16), Expect = 6.4
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 3003 gtgcttggggtcggcc 3018
||||||||||||||||
Sbjct: 1411 gtgcttggggtcggcc 1396
>ISMpo8
Length = 849
Score = 32.2 bits (16), Expect = 6.4
Identities = 25/28 (89%)
Strand = Plus / Minus
Query: 4798 ttcgggcctgtttgtcgtagcgggtggc 4825
||||||| ||||||||||||| |||||
Sbjct: 786 ttcgggcgagtttgtcgtagcgtgtggc 759
>ISMno5
Length = 1728
Score = 32.2 bits (16), Expect = 6.4
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 4545 gcgcgccggcctcgcc 4560
||||||||||||||||
Sbjct: 425 gcgcgccggcctcgcc 410
>ISPam4
Length = 865
Score = 32.2 bits (16), Expect = 6.4
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 4810 tgtcgtagcgggtggc 4825
||||||||||||||||
Sbjct: 782 tgtcgtagcgggtggc 767
>ISPfr15
Length = 1097
Score = 32.2 bits (16), Expect = 6.4
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 4263 cgggctgcggttcacc 4278
||||||||||||||||
Sbjct: 328 cgggctgcggttcacc 343
>ISAar35
Length = 1072
Score = 32.2 bits (16), Expect = 6.4
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 3756 ggaccgggccgcgggg 3771
||||||||||||||||
Sbjct: 579 ggaccgggccgcgggg 594
>ISAar34
Length = 1438
Score = 32.2 bits (16), Expect = 6.4
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 2401 gggaacggcggcgacg 2416
||||||||||||||||
Sbjct: 398 gggaacggcggcgacg 383
>ISMav7
Length = 1691
Score = 32.2 bits (16), Expect = 6.4
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 4268 tgcggttcaccgacgc 4283
||||||||||||||||
Sbjct: 1098 tgcggttcaccgacgc 1113
>ISMyma7
Length = 1694
Score = 32.2 bits (16), Expect = 6.4
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 4268 tgcggttcaccgacgc 4283
||||||||||||||||
Sbjct: 1096 tgcggttcaccgacgc 1111
>ISAar6
Length = 1519
Score = 32.2 bits (16), Expect = 6.4
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 2467 cgtcccggccccttca 2482
||||||||||||||||
Sbjct: 1385 cgtcccggccccttca 1370
>ISMex25
Length = 887
Score = 32.2 bits (16), Expect = 6.4
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 2831 acggcaacccagtcga 2846
||||||||||||||||
Sbjct: 409 acggcaacccagtcga 424
>ISStma3
Length = 1023
Score = 32.2 bits (16), Expect = 6.4
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 3717 caagtggctggcccga 3732
||||||||||||||||
Sbjct: 212 caagtggctggcccga 227
>ISAzo14
Length = 1925
Score = 32.2 bits (16), Expect = 6.4
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 3694 gagcggatcgacgcgctgat 3713
||||| ||||||||||||||
Sbjct: 1220 gagcgcatcgacgcgctgat 1239
>ISCARN3
Length = 2070
Score = 32.2 bits (16), Expect = 6.4
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 3271 ccggtggtgcgtttcg 3286
||||||||||||||||
Sbjct: 416 ccggtggtgcgtttcg 431
>ISAli10
Length = 2584
Score = 32.2 bits (16), Expect = 6.4
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 2398 gccgggaacggcggcg 2413
||||||||||||||||
Sbjct: 129 gccgggaacggcggcg 144
>ISStau2
Length = 1585
Score = 32.2 bits (16), Expect = 6.4
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 2072 gccaggtgcgcggtga 2087
||||||||||||||||
Sbjct: 890 gccaggtgcgcggtga 875
>ISMsm3
Length = 1695
Score = 32.2 bits (16), Expect = 6.4
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 4266 gctgcggttcaccgac 4281
||||||||||||||||
Sbjct: 1095 gctgcggttcaccgac 1110
>ISAzvi12
Length = 1248
Score = 32.2 bits (16), Expect = 6.4
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 2194 gcagatccgcaccagc 2209
||||||||||||||||
Sbjct: 961 gcagatccgcaccagc 946
>ISSst1
Length = 1167
Score = 32.2 bits (16), Expect = 6.4
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 4121 tgcccgccctgcggcagatc 4140
|||||||| |||||||||||
Sbjct: 178 tgcccgccttgcggcagatc 159
>ISOba1
Length = 1271
Score = 32.2 bits (16), Expect = 6.4
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 1040 cgggtgacgtcgtcga 1055
||||||||||||||||
Sbjct: 760 cgggtgacgtcgtcga 745
>ISPpu20
Length = 1598
Score = 32.2 bits (16), Expect = 6.4
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 3088 gaggtcgagtcgatcgaccg 3107
|||| |||||||||||||||
Sbjct: 636 gagggcgagtcgatcgaccg 655
>ISCc1
Length = 848
Score = 32.2 bits (16), Expect = 6.4
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 4283 cgcacgcccaagcgct 4298
||||||||||||||||
Sbjct: 409 cgcacgcccaagcgct 424
>ISPsy14
Length = 2597
Score = 32.2 bits (16), Expect = 6.4
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 3714 gcgcaagtggctggcc 3729
||||||||||||||||
Sbjct: 1327 gcgcaagtggctggcc 1312
>ISPpu14
Length = 2383
Score = 32.2 bits (16), Expect = 6.4
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 3854 tcgagcaggtcatcca 3869
||||||||||||||||
Sbjct: 1049 tcgagcaggtcatcca 1034
>ISRm4-3
Length = 934
Score = 32.2 bits (16), Expect = 6.4
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 3668 aggccatctgtgacgg 3683
||||||||||||||||
Sbjct: 626 aggccatctgtgacgg 611
>ISPs1
Length = 910
Score = 32.2 bits (16), Expect = 6.4
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 4809 ttgtcgtagcgggtggcgat 4828
||||||||||||||| ||||
Sbjct: 831 ttgtcgtagcgggtgccgat 812
>ISMt3
Length = 2213
Score = 32.2 bits (16), Expect = 6.4
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 1539 gcgccgacctggagcg 1554
||||||||||||||||
Sbjct: 1105 gcgccgacctggagcg 1120
>ISMbo1
Length = 2212
Score = 32.2 bits (16), Expect = 6.4
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 1539 gcgccgacctggagcg 1554
||||||||||||||||
Sbjct: 1105 gcgccgacctggagcg 1120
>ISBugl1
Length = 1335
Score = 32.2 bits (16), Expect = 6.4
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 3585 ggcggtcaaggctggc 3600
||||||||||||||||
Sbjct: 271 ggcggtcaaggctggc 286
>IS1417
Length = 1335
Score = 32.2 bits (16), Expect = 6.4
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 3585 ggcggtcaaggctggc 3600
||||||||||||||||
Sbjct: 271 ggcggtcaaggctggc 286
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_41_length_2823_cov_201.183_ID_5250
(2823 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISAnsp4 | IS21 | Anaeromyxobacter sp. | 56 | 3e-07 | |
| ISBlo1 | IS21 | Bifidobacterium longum | 44 | 0.001 | |
| IS1557 | ISL3 | Mycobacterium tuberculosis | 40 | 0.015 | |
| ISMex39 | IS21 | Methylobacterium extorquens | 38 | 0.061 | |
| ISBmu1 | IS21 | Burkholderia multivorans | 38 | 0.061 | |
| ISUnCu17 | IS1182 | Uncultured bacteria | 36 | 0.24 | |
| ISAzs18 | IS66 | Azospirillum sp. | 36 | 0.24 | |
| ISVsp5 | IS4 | IS4Sa | Verrucomicrobium spinosum | 36 | 0.24 |
| ISAzo17 | IS21 | Azoarcus sp. | 36 | 0.24 | |
| ISKpn7 | IS21 | Klebsiella pneumoniae | 36 | 0.24 | |
| ISAzo25 | IS1182 | Azoarcus sp. | 36 | 0.24 | |
| ISEc47 | IS66 | Escherichia coli | 34 | 0.95 | |
| ISEc43 | IS66 | Escherichia coli | 34 | 0.95 | |
| ISPa36 | IS21 | Pseudomonas aeruginosa | 34 | 0.95 | |
| ISUnCu14 | IS66 | Uncultured bacterium | 34 | 0.95 | |
| ISApr13 | IS5 | Alpha proteobacterium | 34 | 0.95 | |
| ISPfr10 | IS3 | IS407 | Propionibacterium freudenreichii | 34 | 0.95 |
| IS682 | IS66 | Escherichia coli | 34 | 0.95 | |
| ISMdi10 | IS110 | IS1111 | Methylobacterium dichloromethanicum | 34 | 0.95 |
| ISUnCu3 | IS21 | Uncultured bacterium | 34 | 0.95 | |
| ISPre4 | IS21 | Pseudomonas resinovorans | 34 | 0.95 | |
| ISEc23 | IS66 | Escherichia coli | 34 | 0.95 | |
| ISRhosp1 | IS3 | IS3 | Rhodococcus sp. | 34 | 0.95 |
| ISPpu7 | IS21 | - | Pseudomonas putida | 34 | 0.95 |
| ISMt2 | IS21 | - | Mycobacterium tuberculosis | 34 | 0.95 |
| IS931 | IS256 | - | Burkholderia cepacia | 34 | 0.95 |
| IS1491 | IS21 | - | Pseudomonas alcaligenes | 34 | 0.95 |
| ISMdi15 | IS200/IS605 | IS1341 | Methylobacterium dichloromethanicum | 32 | 3.7 |
| ISFK1 | IS21 | Bradyrhizobium japonicum | 32 | 3.7 | |
| ISKpn25 | ISL3 | Klebsiella pneumoniae | 32 | 3.7 | |
| ISMyo1 | IS256 | Mycobacterium yongonense | 32 | 3.7 | |
| ISHth1 | ISH6 | Halococcus thailandensis | 32 | 3.7 | |
| ISSoEn3 | IS21 | Primary endosymbiont of Sitophilus oryzae | 32 | 3.7 | |
| ISAzs25 | IS1380 | Azospirillum sp. | 32 | 3.7 | |
| ISAzs10 | IS5 | Azospirillum sp. | 32 | 3.7 | |
| ISGau7 | IS21 | Gemmatimonas aurantiaca | 32 | 3.7 | |
| ISMno38 | IS1182 | Methylobacterium nodulans | 32 | 3.7 | |
| ISMno8 | IS1182 | Methylobacterium nodulans | 32 | 3.7 | |
| ISArsp6 | Tn3 | Arthrobacter sp. | 32 | 3.7 | |
| ISAau2 | IS21 | Arthrobacter aurescens | 32 | 3.7 | |
| ISAar43 | IS3 | IS407 | Arthrobacter arilaitensis | 32 | 3.7 |
| ISRjo1 | IS1380 | Rhodococcus jostii | 32 | 3.7 | |
| ISMdi6 | IS1182 | Methylobacterium dichloromethanicum | 32 | 3.7 | |
| ISMex36 | IS1182 | Methylobacterium extorquens | 32 | 3.7 | |
| ISAcr3 | ISAs1 | Acidiphilium cryptum | 32 | 3.7 | |
| ISMex8 | IS21 | Methylobacterium extorquens | 32 | 3.7 | |
| ISThsp9 | Tn3 | Thiomonas sp. | 32 | 3.7 | |
| ISCARN24 | IS21 | Metagenomic data from CARNOULES | 32 | 3.7 | |
| ISRhsp5 | IS66 | Rhodobacter sphaeroides | 32 | 3.7 | |
| ISAzca2 | IS66 | Azorhizobium caulinodans | 32 | 3.7 | |
| ISArsp2 | IS481 | Arthrobacter sp. | 32 | 3.7 | |
| ISAli11 | ISL3 | Azospirillum lipoferum | 32 | 3.7 | |
| ISFsp11 | IS66 | ISBst12 | Frankia sp. | 32 | 3.7 |
| ISDet2 | IS3 | IS407 | Dehalococcoides ethenogenes | 32 | 3.7 |
| ISRm21 | ISAs1 | Sinorhizobium meliloti | 32 | 3.7 | |
| ISNmo3 | IS481 | Nitrococcus mobilis | 32 | 3.7 | |
| ISRhosp4 | IS701 | Rhodococcus sp. | 32 | 3.7 | |
| ISPepr1 | IS4 | ISPepr1 | Pelobacter propionicus | 32 | 3.7 |
| ISFal2 | IS6 | Frankia alni | 32 | 3.7 | |
| IS882 | Tn3 | Ralstonia eutropha | 32 | 3.7 | |
| ISLxx3 | IS21 | Leifsonia xyli | 32 | 3.7 | |
| ISLxx1 | IS21 | Leifsonia xyli | 32 | 3.7 | |
| ISFlsp1 | IS21 | Flavobacterium sp | 32 | 3.7 | |
| ISDeal1 | IS66 | Dethiobacter alkaliphilus | 32 | 3.7 | |
| ISPsy1 | IS630 | - | Pseudomonas syringae | 32 | 3.7 |
| ISBst1 | IS481 | - | Bacillus stearothermophilus | 32 | 3.7 |
| IS1602 | IS607 | Mycobacterium tuberculosis | 32 | 3.7 | |
| IS1001 | ISL3 | - | Bordetella parapertussis | 32 | 3.7 |
>ISAnsp4
Length = 2195
Score = 56.0 bits (28), Expect = 3e-07
Identities = 40/44 (90%)
Strand = Plus / Minus
Query: 462 gcggcgtggccgagcgcggtcgcgaggtgggtcttgccggcgcc 505
|||||| ||||||||||| |||||||||| ||||||||| ||||
Sbjct: 1734 gcggcgcggccgagcgcgatcgcgaggtgagtcttgccgacgcc 1691
>ISBlo1
Length = 2590
Score = 44.1 bits (22), Expect = 0.001
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 486 aggtgggtcttgccggcgccgacgggcccg 515
|||||| ||||||||| |||||||||||||
Sbjct: 2081 aggtggctcttgccggtgccgacgggcccg 2052
>IS1557
Length = 1509
Score = 40.1 bits (20), Expect = 0.015
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 1685 ggcgcctcggcctgcaggaacacctcga 1712
||||||||||||| || |||||||||||
Sbjct: 400 ggcgcctcggcctccaagaacacctcga 373
>ISMex39
Length = 2456
Score = 38.2 bits (19), Expect = 0.061
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 483 gcgaggtgggtcttgccgg 501
|||||||||||||||||||
Sbjct: 1930 gcgaggtgggtcttgccgg 1912
>ISBmu1
Length = 2581
Score = 38.2 bits (19), Expect = 0.061
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 321 gcgaagtcatcgacgatgagcag 343
||||||||||||||||| |||||
Sbjct: 2219 gcgaagtcatcgacgatcagcag 2197
Score = 36.2 bits (18), Expect = 0.24
Identities = 24/26 (92%)
Strand = Plus / Minus
Query: 1472 ccgccgggccgctgccgcgggtgggt 1497
||||||| |||||||||||| |||||
Sbjct: 1321 ccgccggcccgctgccgcggatgggt 1296
>ISUnCu17
Length = 1481
Score = 36.2 bits (18), Expect = 0.24
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 2570 cgctcggcgacggtgcgt 2587
||||||||||||||||||
Sbjct: 1159 cgctcggcgacggtgcgt 1142
>ISAzs18
Length = 2633
Score = 36.2 bits (18), Expect = 0.24
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 636 aggccggccttggcggcg 653
||||||||||||||||||
Sbjct: 1106 aggccggccttggcggcg 1089
>ISVsp5
Length = 1426
Score = 36.2 bits (18), Expect = 0.24
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 1744 catcccggcccgctgcgc 1761
||||||||||||||||||
Sbjct: 861 catcccggcccgctgcgc 878
>ISAzo17
Length = 2095
Score = 36.2 bits (18), Expect = 0.24
Identities = 24/26 (92%)
Strand = Plus / Minus
Query: 1901 acgaacccggcgtgctgggcgtagtc 1926
|||||||||||||| ||||||||||
Sbjct: 735 acgaacccggcgtgacgggcgtagtc 710
>ISKpn7
Length = 1956
Score = 36.2 bits (18), Expect = 0.24
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 483 gcgaggtgggtcttgccg 500
||||||||||||||||||
Sbjct: 1461 gcgaggtgggtcttgccg 1444
>ISAzo25
Length = 1388
Score = 36.2 bits (18), Expect = 0.24
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 2570 cgctcggcgacggtgcgt 2587
||||||||||||||||||
Sbjct: 1200 cgctcggcgacggtgcgt 1183
>ISEc47
Length = 2541
Score = 34.2 bits (17), Expect = 0.95
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 1390 gcaggtgccgatcagcc 1406
|||||||||||||||||
Sbjct: 2391 gcaggtgccgatcagcc 2375
>ISEc43
Length = 2541
Score = 34.2 bits (17), Expect = 0.95
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 1390 gcaggtgccgatcagcc 1406
|||||||||||||||||
Sbjct: 2391 gcaggtgccgatcagcc 2375
>ISPa36
Length = 2468
Score = 34.2 bits (17), Expect = 0.95
Identities = 23/25 (92%)
Strand = Plus / Minus
Query: 477 gcggtcgcgaggtgggtcttgccgg 501
||||| || ||||||||||||||||
Sbjct: 1952 gcggtggccaggtgggtcttgccgg 1928
>ISUnCu14
Length = 2442
Score = 34.2 bits (17), Expect = 0.95
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 1345 caggatccgttcggcgt 1361
|||||||||||||||||
Sbjct: 1778 caggatccgttcggcgt 1762
>ISApr13
Length = 1556
Score = 34.2 bits (17), Expect = 0.95
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 1936 ctggctcagccgcgggt 1952
|||||||||||||||||
Sbjct: 462 ctggctcagccgcgggt 478
>ISPfr10
Length = 1247
Score = 34.2 bits (17), Expect = 0.95
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 169 cgatggccgactgggcg 185
|||||||||||||||||
Sbjct: 945 cgatggccgactgggcg 961
>IS682
Length = 2533
Score = 34.2 bits (17), Expect = 0.95
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 1390 gcaggtgccgatcagcc 1406
|||||||||||||||||
Sbjct: 2383 gcaggtgccgatcagcc 2367
>ISMdi10
Length = 1186
Score = 34.2 bits (17), Expect = 0.95
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 464 ggcgtggccgagcgcggtcgc 484
||||||||||||||| |||||
Sbjct: 1093 ggcgtggccgagcgccgtcgc 1113
>ISUnCu3
Length = 2596
Score = 34.2 bits (17), Expect = 0.95
Identities = 26/29 (89%)
Strand = Plus / Minus
Query: 1602 cgacctcgacgtggaagtcgcggtgcacc 1630
|||||||||||||| ||||| |||||||
Sbjct: 1212 cgacctcgacgtggtagtcgatgtgcacc 1184
>ISPre4
Length = 2575
Score = 34.2 bits (17), Expect = 0.95
Identities = 26/29 (89%)
Strand = Plus / Minus
Query: 1602 cgacctcgacgtggaagtcgcggtgcacc 1630
|||||||||||||| ||||| |||||||
Sbjct: 1189 cgacctcgacgtggtagtcgatgtgcacc 1161
>ISEc23
Length = 2532
Score = 34.2 bits (17), Expect = 0.95
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 1390 gcaggtgccgatcagcc 1406
|||||||||||||||||
Sbjct: 2382 gcaggtgccgatcagcc 2366
>ISRhosp1
Length = 1321
Score = 34.2 bits (17), Expect = 0.95
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 498 ccggcgccgacgggcccgagg 518
|||||||||||||| ||||||
Sbjct: 251 ccggcgccgacgggaccgagg 271
>ISPpu7
Length = 2598
Score = 34.2 bits (17), Expect = 0.95
Identities = 26/29 (89%)
Strand = Plus / Minus
Query: 1602 cgacctcgacgtggaagtcgcggtgcacc 1630
|||||||||||||| ||||| |||||||
Sbjct: 1213 cgacctcgacgtggtagtcgatgtgcacc 1185
>ISMt2
Length = 2645
Score = 34.2 bits (17), Expect = 0.95
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 779 gccggacagtttcaggg 795
|||||||||||||||||
Sbjct: 1851 gccggacagtttcaggg 1835
Score = 34.2 bits (17), Expect = 0.95
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 671 ggactcgcggcgggcga 687
|||||||||||||||||
Sbjct: 1959 ggactcgcggcgggcga 1943
>IS931
Length = 1477
Score = 34.2 bits (17), Expect = 0.95
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 349 cggcggcgaggcggcgg 365
|||||||||||||||||
Sbjct: 447 cggcggcgaggcggcgg 463
>IS1491
Length = 2481
Score = 34.2 bits (17), Expect = 0.95
Identities = 26/29 (89%)
Strand = Plus / Minus
Query: 1602 cgacctcgacgtggaagtcgcggtgcacc 1630
|||||||||||||| ||||| |||||||
Sbjct: 1143 cgacctcgacgtggtagtcgatgtgcacc 1115
>ISMdi15
Length = 1344
Score = 32.2 bits (16), Expect = 3.7
Identities = 22/24 (91%)
Strand = Plus / Minus
Query: 2501 gcccggtccagcccggcctcctgc 2524
||||||| ||||||||||| ||||
Sbjct: 1041 gcccggttcagcccggccttctgc 1018
>ISFK1
Length = 2592
Score = 32.2 bits (16), Expect = 3.7
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 2046 cggcgatcaccgcggc 2061
||||||||||||||||
Sbjct: 1422 cggcgatcaccgcggc 1407
>ISKpn25
Length = 8154
Score = 32.2 bits (16), Expect = 3.7
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 243 atggtggacatcttgc 258
||||||||||||||||
Sbjct: 4880 atggtggacatcttgc 4865
>ISMyo1
Length = 1472
Score = 32.2 bits (16), Expect = 3.7
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 2078 gtcagccagacgaaca 2093
||||||||||||||||
Sbjct: 147 gtcagccagacgaaca 132
>ISHth1
Length = 1445
Score = 32.2 bits (16), Expect = 3.7
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 1893 ggtcggtgacgaacccggcg 1912
|||||||||||||| |||||
Sbjct: 179 ggtcggtgacgaactcggcg 160
>ISSoEn3
Length = 2600
Score = 32.2 bits (16), Expect = 3.7
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 1577 tcgggcagcgagtaga 1592
||||||||||||||||
Sbjct: 1025 tcgggcagcgagtaga 1010
>ISAzs25
Length = 1614
Score = 32.2 bits (16), Expect = 3.7
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 629 cgggtcgaggccggcc 644
||||||||||||||||
Sbjct: 1024 cgggtcgaggccggcc 1039
>ISAzs10
Length = 1307
Score = 32.2 bits (16), Expect = 3.7
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 2583 tgcgtagcccggcccc 2598
||||||||||||||||
Sbjct: 1057 tgcgtagcccggcccc 1042
>ISGau7
Length = 2510
Score = 32.2 bits (16), Expect = 3.7
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 459 atcgcggcgtggccgagcgc 478
||||| ||||||||||||||
Sbjct: 2044 atcgccgcgtggccgagcgc 2025
>ISMno38
Length = 1466
Score = 32.2 bits (16), Expect = 3.7
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 640 cggccttggcggcgcg 655
||||||||||||||||
Sbjct: 711 cggccttggcggcgcg 696
>ISMno8
Length = 1466
Score = 32.2 bits (16), Expect = 3.7
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 640 cggccttggcggcgcg 655
||||||||||||||||
Sbjct: 711 cggccttggcggcgcg 696
>ISArsp6
Length = 26712
Score = 32.2 bits (16), Expect = 3.7
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 706 gctgcaggaacgcggcgtgg 725
||||||||||||||| ||||
Sbjct: 23304 gctgcaggaacgcggtgtgg 23323
Score = 32.2 bits (16), Expect = 3.7
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 158 ggtgagccggtcgatg 173
||||||||||||||||
Sbjct: 24405 ggtgagccggtcgatg 24390
>ISAau2
Length = 2222
Score = 32.2 bits (16), Expect = 3.7
Identities = 22/24 (91%)
Strand = Plus / Minus
Query: 483 gcgaggtgggtcttgccggcgccg 506
|||||||||||||| |||| ||||
Sbjct: 1741 gcgaggtgggtcttcccggtgccg 1718
>ISAar43
Length = 1247
Score = 32.2 bits (16), Expect = 3.7
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 169 cgatggccgactgggc 184
||||||||||||||||
Sbjct: 945 cgatggccgactgggc 960
>ISRjo1
Length = 1967
Score = 32.2 bits (16), Expect = 3.7
Identities = 22/24 (91%)
Strand = Plus / Minus
Query: 487 ggtgggtcttgccggcgccgacgg 510
||||||||||| ||||| ||||||
Sbjct: 1365 ggtgggtcttgtcggcgtcgacgg 1342
>ISMdi6
Length = 1466
Score = 32.2 bits (16), Expect = 3.7
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 640 cggccttggcggcgcg 655
||||||||||||||||
Sbjct: 711 cggccttggcggcgcg 696
>ISMex36
Length = 1467
Score = 32.2 bits (16), Expect = 3.7
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 640 cggccttggcggcgcg 655
||||||||||||||||
Sbjct: 711 cggccttggcggcgcg 696
>ISAcr3
Length = 1232
Score = 32.2 bits (16), Expect = 3.7
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 1061 cgactggccggggttg 1076
||||||||||||||||
Sbjct: 848 cgactggccggggttg 863
>ISMex8
Length = 2597
Score = 32.2 bits (16), Expect = 3.7
Identities = 22/24 (91%)
Strand = Plus / Minus
Query: 483 gcgaggtgggtcttgccggcgccg 506
|||| |||||||||||||| ||||
Sbjct: 1999 gcgatgtgggtcttgccggtgccg 1976
>ISThsp9
Length = 6215
Score = 32.2 bits (16), Expect = 3.7
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 92 gtcaaggatgacgcgc 107
||||||||||||||||
Sbjct: 1434 gtcaaggatgacgcgc 1419
>ISCARN24
Length = 2778
Score = 32.2 bits (16), Expect = 3.7
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 1986 ggttgtccgggacgat 2001
||||||||||||||||
Sbjct: 844 ggttgtccgggacgat 829
>ISRhsp5
Length = 2528
Score = 32.2 bits (16), Expect = 3.7
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 1390 gcaggtgccgatcagc 1405
||||||||||||||||
Sbjct: 2376 gcaggtgccgatcagc 2361
>ISAzca2
Length = 2458
Score = 32.2 bits (16), Expect = 3.7
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 2788 cgctcagagcggtccc 2803
||||||||||||||||
Sbjct: 1911 cgctcagagcggtccc 1926
>ISArsp2
Length = 1373
Score = 32.2 bits (16), Expect = 3.7
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 1478 ggccgctgccgcgggt 1493
||||||||||||||||
Sbjct: 1067 ggccgctgccgcgggt 1052
>ISAli11
Length = 1739
Score = 32.2 bits (16), Expect = 3.7
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 687 acctcatcagacagcagcag 706
|||||||| |||||||||||
Sbjct: 914 acctcatccgacagcagcag 895
>ISFsp11
Length = 1836
Score = 32.2 bits (16), Expect = 3.7
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 2448 ccgcgaccacgacctgaccg 2467
||||||||||| ||||||||
Sbjct: 1680 ccgcgaccacggcctgaccg 1699
>ISDet2
Length = 1417
Score = 32.2 bits (16), Expect = 3.7
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 323 gaagtcatcgacgatg 338
||||||||||||||||
Sbjct: 773 gaagtcatcgacgatg 758
>ISRm21
Length = 1167
Score = 32.2 bits (16), Expect = 3.7
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 641 ggccttggcggcgcgc 656
||||||||||||||||
Sbjct: 442 ggccttggcggcgcgc 427
>ISNmo3
Length = 1061
Score = 32.2 bits (16), Expect = 3.7
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 2537 taccggcgcgccgtct 2552
||||||||||||||||
Sbjct: 561 taccggcgcgccgtct 546
>ISRhosp4
Length = 1349
Score = 32.2 bits (16), Expect = 3.7
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 2564 ccggcccgctcggcga 2579
||||||||||||||||
Sbjct: 204 ccggcccgctcggcga 189
>ISPepr1
Length = 1556
Score = 32.2 bits (16), Expect = 3.7
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 1556 aggtgctggccgaggtactg 1575
||||||||||||| ||||||
Sbjct: 963 aggtgctggccgaagtactg 982
>ISFal2
Length = 826
Score = 32.2 bits (16), Expect = 3.7
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 2309 gcgagcagctcctcga 2324
||||||||||||||||
Sbjct: 200 gcgagcagctcctcga 185
>IS882
Length = 3363
Score = 32.2 bits (16), Expect = 3.7
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 1962 ccgcgtcggtgacgac 1977
||||||||||||||||
Sbjct: 1235 ccgcgtcggtgacgac 1220
>ISLxx3
Length = 2637
Score = 32.2 bits (16), Expect = 3.7
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 330 tcgacgatgagcaggtcgac 349
|||| |||||||||||||||
Sbjct: 2345 tcgatgatgagcaggtcgac 2326
>ISLxx1
Length = 2205
Score = 32.2 bits (16), Expect = 3.7
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 481 tcgcgaggtgggtctt 496
||||||||||||||||
Sbjct: 1726 tcgcgaggtgggtctt 1711
>ISFlsp1
Length = 2669
Score = 32.2 bits (16), Expect = 3.7
Identities = 31/36 (86%)
Strand = Plus / Minus
Query: 471 ccgagcgcggtcgcgaggtgggtcttgccggcgccg 506
||||||||| ||||| ||||||||||||| ||||
Sbjct: 2073 ccgagcgcgagcgcgacatgggtcttgccggtgccg 2038
>ISDeal1
Length = 2525
Score = 32.2 bits (16), Expect = 3.7
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 1402 cagccgggccaggtcc 1417
||||||||||||||||
Sbjct: 343 cagccgggccaggtcc 358
>ISPsy1
Length = 2009
Score = 32.2 bits (16), Expect = 3.7
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 792 agggcgcgcaggatgc 807
||||||||||||||||
Sbjct: 1014 agggcgcgcaggatgc 1029
>ISBst1
Length = 1461
Score = 32.2 bits (16), Expect = 3.7
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 1997 acgatcaccttgaaca 2012
||||||||||||||||
Sbjct: 1203 acgatcaccttgaaca 1218
>IS1602
Length = 2053
Score = 32.2 bits (16), Expect = 3.7
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 293 ggtctgggtcgcgtcc 308
||||||||||||||||
Sbjct: 1064 ggtctgggtcgcgtcc 1049
>IS1001
Length = 1306
Score = 32.2 bits (16), Expect = 3.7
Identities = 22/24 (91%)
Strand = Plus / Minus
Query: 2019 cgaagaacgcccaggccgcctcgc 2042
|||||||||||| ||||| |||||
Sbjct: 677 cgaagaacgcccgggccgtctcgc 654
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_42_length_2686_cov_84.0471_ID_5252
(2686 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISBcen14 | IS66 | Burkholderia cenocepacia | 40 | 0.015 | |
| IS1557 | ISL3 | Mycobacterium tuberculosis | 38 | 0.058 | |
| ISMno23 | IS91 | Methylobacterium nodulans | 36 | 0.23 | |
| ISSav7 | IS481 | Streptomyces avermitilis | 36 | 0.23 | |
| ISTfu1 | IS200/IS605 | Thermobifida fusca | 36 | 0.23 | |
| ISRso14 | IS3 | IS407 | Ralstonia solanacearum | 36 | 0.23 |
| ISRm5 | IS256 | - | Rhizobium meliloti | 36 | 0.23 |
| ISCARN43 | IS1595 | ISPna2 | Metagenomic data from CARNOULES | 34 | 0.90 |
| ISKrh1 | IS481 | Kocuria rhizophila | 34 | 0.90 | |
| ISPa42 | Tn3 | Pseudomonas aeruginosa | 34 | 0.90 | |
| IS3000 | Tn3 | - | Escherichia coli | 34 | 0.90 |
| IS117 | IS110 | - | Streptomyces coelicolor | 34 | 0.90 |
| TnXo19 | Tn3 | Xanthomonas oryzae | 32 | 3.6 | |
| ISNpe25 | IS66 | ISBst12 | Natrinema pellirubrum | 32 | 3.6 |
| ISAod1 | IS256 | IS1249 | Actinomyces odontolyticus | 32 | 3.6 |
| ISNpe8 | IS66 | ISBst12 | Natrinema pellirubrum | 32 | 3.6 |
| ISPa38 | Tn3 | Pseudomonas aeruginosa | 32 | 3.6 | |
| ISAcma50 | IS21 | Acaryochloris marina | 32 | 3.6 | |
| ISNml2 | IS1380 | Nakamurella multipartita | 32 | 3.6 | |
| ISAde3 | IS3 | IS407 | Anaeromyxobacter dehalogenans | 32 | 3.6 |
| ISAnsp12 | IS66 | Anaeromyxobacter sp. | 32 | 3.6 | |
| ISMex12 | IS110 | Methylobacterium extorquens | 32 | 3.6 | |
| ISMex6 | ISNCY | IS1202 | Methylobacterium extorquens | 32 | 3.6 |
| ISCARN62 | ISNCY | IS1202 | Metagenomic data from CARNOULES | 32 | 3.6 |
| ISGob2 | IS66 | ISBst12 | Gemmata obscuriglobus | 32 | 3.6 |
| ISH10B | IS66 | ISBst12 | Halobacterium sp | 32 | 3.6 |
| ISBcen7 | IS3 | IS3 | Burkholderia cenocepacia | 32 | 3.6 |
| ISBmu2 | IS5 | IS5 | Burkholderia multivorans | 32 | 3.6 |
| IS2606 | IS256 | - | Mycobacterium ulcerans | 32 | 3.6 |
>ISBcen14
Length = 2516
Score = 40.1 bits (20), Expect = 0.015
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 365 tcgcggcggcacgttcgccg 384
||||||||||||||||||||
Sbjct: 2291 tcgcggcggcacgttcgccg 2272
>IS1557
Length = 1509
Score = 38.2 bits (19), Expect = 0.058
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 53 cacccacggaagggtcagaggagccca 79
|||||||||||| |||||| |||||||
Sbjct: 60 cacccacggaagtgtcagaagagccca 34
>ISMno23
Length = 2271
Score = 36.2 bits (18), Expect = 0.23
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 2457 ggctggaacggcagcagg 2474
||||||||||||||||||
Sbjct: 1242 ggctggaacggcagcagg 1259
>ISSav7
Length = 2992
Score = 36.2 bits (18), Expect = 0.23
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 856 tcgtcgagcgcctcgtggagcg 877
|||||||||||||| |||||||
Sbjct: 1046 tcgtcgagcgcctcctggagcg 1067
>ISTfu1
Length = 1743
Score = 36.2 bits (18), Expect = 0.23
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 567 ggacacgcccgctcggcg 584
||||||||||||||||||
Sbjct: 907 ggacacgcccgctcggcg 924
>ISRso14
Length = 1234
Score = 36.2 bits (18), Expect = 0.23
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 2437 aagcggtcgacatcgtcg 2454
||||||||||||||||||
Sbjct: 467 aagcggtcgacatcgtcg 450
>ISRm5
Length = 1340
Score = 36.2 bits (18), Expect = 0.23
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 2129 atgccggtctcgtcgcgg 2146
||||||||||||||||||
Sbjct: 791 atgccggtctcgtcgcgg 808
>ISCARN43
Length = 1086
Score = 34.2 bits (17), Expect = 0.90
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 1867 tgtgcgctggccgcggcaggc 1887
|||| ||||||||||||||||
Sbjct: 575 tgtgggctggccgcggcaggc 555
>ISKrh1
Length = 2854
Score = 34.2 bits (17), Expect = 0.90
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 436 tgctgggtgccgtcgcc 452
|||||||||||||||||
Sbjct: 900 tgctgggtgccgtcgcc 916
>ISPa42
Length = 16941
Score = 34.2 bits (17), Expect = 0.90
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 479 ccttcagcgcgccggcg 495
|||||||||||||||||
Sbjct: 13530 ccttcagcgcgccggcg 13514
>IS3000
Length = 3235
Score = 34.2 bits (17), Expect = 0.90
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 435 gtgctgggtgccgtcgc 451
|||||||||||||||||
Sbjct: 1393 gtgctgggtgccgtcgc 1377
>IS117
Length = 2527
Score = 34.2 bits (17), Expect = 0.90
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 2067 gcacggtgatggtctgggcga 2087
|||||||||||| ||||||||
Sbjct: 1343 gcacggtgatggcctgggcga 1363
Score = 32.2 bits (16), Expect = 3.6
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 951 gtcatcgacgagggcg 966
||||||||||||||||
Sbjct: 100 gtcatcgacgagggcg 85
>TnXo19
Length = 18767
Score = 32.2 bits (16), Expect = 3.6
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 1971 cgcgcagcgtgtcggc 1986
||||||||||||||||
Sbjct: 10828 cgcgcagcgtgtcggc 10843
>ISNpe25
Length = 1626
Score = 32.2 bits (16), Expect = 3.6
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 1827 ctcggcttcccggaga 1842
||||||||||||||||
Sbjct: 1135 ctcggcttcccggaga 1120
>ISAod1
Length = 1334
Score = 32.2 bits (16), Expect = 3.6
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 2042 agcaggtaggccaagg 2057
||||||||||||||||
Sbjct: 241 agcaggtaggccaagg 256
>ISNpe8
Length = 1650
Score = 32.2 bits (16), Expect = 3.6
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 327 ggccgacgggatggtc 342
||||||||||||||||
Sbjct: 135 ggccgacgggatggtc 120
>ISPa38
Length = 6455
Score = 32.2 bits (16), Expect = 3.6
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 824 cggcagcgagcgcgag 839
||||||||||||||||
Sbjct: 1729 cggcagcgagcgcgag 1714
>ISAcma50
Length = 2718
Score = 32.2 bits (16), Expect = 3.6
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 2489 cctgacgtcacctcac 2504
||||||||||||||||
Sbjct: 1619 cctgacgtcacctcac 1634
>ISNml2
Length = 1689
Score = 32.2 bits (16), Expect = 3.6
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 1184 gcaggttccgcagccg 1199
||||||||||||||||
Sbjct: 1504 gcaggttccgcagccg 1489
>ISAde3
Length = 1183
Score = 32.2 bits (16), Expect = 3.6
Identities = 22/24 (91%)
Strand = Plus / Plus
Query: 853 gcgtcgtcgagcgcctcgtggagc 876
||||| ||||||||||||| ||||
Sbjct: 814 gcgtcctcgagcgcctcgtcgagc 837
>ISAnsp12
Length = 2926
Score = 32.2 bits (16), Expect = 3.6
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 1081 tcccgcggggaagcgg 1096
||||||||||||||||
Sbjct: 421 tcccgcggggaagcgg 406
>ISMex12
Length = 1418
Score = 32.2 bits (16), Expect = 3.6
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 2527 gacccgctcgccgccg 2542
||||||||||||||||
Sbjct: 459 gacccgctcgccgccg 474
>ISMex6
Length = 1535
Score = 32.2 bits (16), Expect = 3.6
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 2536 gccgccgccgcagccc 2551
||||||||||||||||
Sbjct: 203 gccgccgccgcagccc 188
>ISCARN62
Length = 1398
Score = 32.2 bits (16), Expect = 3.6
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 212 gggcagcggcctttgc 227
||||||||||||||||
Sbjct: 229 gggcagcggcctttgc 244
>ISGob2
Length = 1575
Score = 32.2 bits (16), Expect = 3.6
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 1868 gtgcgctggccgcggc 1883
||||||||||||||||
Sbjct: 1542 gtgcgctggccgcggc 1527
>ISH10B
Length = 1629
Score = 32.2 bits (16), Expect = 3.6
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 327 ggccgacgggatggtc 342
||||||||||||||||
Sbjct: 135 ggccgacgggatggtc 120
>ISBcen7
Length = 1312
Score = 32.2 bits (16), Expect = 3.6
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 1147 gcggcctcctcgaggtcagc 1166
||||||| ||||||||||||
Sbjct: 1179 gcggcctgctcgaggtcagc 1160
>ISBmu2
Length = 1210
Score = 32.2 bits (16), Expect = 3.6
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 473 ccaggtccttcagcgc 488
||||||||||||||||
Sbjct: 867 ccaggtccttcagcgc 852
>IS2606
Length = 1404
Score = 32.2 bits (16), Expect = 3.6
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 2165 gcgtagaccggccggg 2180
||||||||||||||||
Sbjct: 708 gcgtagaccggccggg 693
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_43_length_2451_cov_173.685_ID_5254
(2451 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISFsp3 | IS21 | Frankia sp. | 50 | 1e-05 | |
| ISGau7 | IS21 | Gemmatimonas aurantiaca | 42 | 0.003 | |
| ISAnsp5 | IS21 | Anaeromyxobacter sp. | 38 | 0.053 | |
| ISAnsp4 | IS21 | Anaeromyxobacter sp. | 38 | 0.053 | |
| ISAzo10 | IS3 | IS3 | Azoarcus sp. | 38 | 0.053 |
| ISCARN17 | IS21 | Metagenomic data from CARNOULES | 36 | 0.21 | |
| ISBad1 | IS21 | Bifidobacterium adolescentis | 36 | 0.21 | |
| ISAau4 | Tn3 | Arthrobacter aurescens | 36 | 0.21 | |
| ISBcen28 | IS21 | Burkholderia cenocepacia | 36 | 0.21 | |
| IS1415 | IS21 | - | Rhodococcus erythropolis | 36 | 0.21 |
| TnAs3 | Tn3 | Aeromonas salmonicida | 34 | 0.82 | |
| ISSav6 | IS5 | ISL2 | Streptomyces avermitilis | 34 | 0.82 |
| ISGeob4 | IS5 | ISL2 | Geodermatophilus obscurus | 34 | 0.82 |
| ISRsp18 | IS5 | IS5 | Rhizobium sp. | 34 | 0.82 |
| ISMpo6 | IS1182 | Methylobacterium populi | 34 | 0.82 | |
| ISMdi8 | IS481 | Methylobacterium dichloromethanicum | 34 | 0.82 | |
| ISMex10 | ISL3 | Methylobacterium extorquens | 34 | 0.82 | |
| ISMex13 | IS21 | Methylobacterium extorquens | 34 | 0.82 | |
| ISThsp19 | IS21 | Thiomonas sp. | 34 | 0.82 | |
| ISAzo17 | IS21 | Azoarcus sp. | 34 | 0.82 | |
| ISChy4 | IS21 | Carboxydothermus hydrogenoformans | 34 | 0.82 | |
| ISCsp1 | IS256 | Comamonas sp | 34 | 0.82 | |
| ISMno25 | IS110 | IS1111 | Methylobacterium nodulans | 32 | 3.2 |
| ISMpo4 | IS110 | IS1111 | Methylobacterium populi | 32 | 3.2 |
| ISRtr5 | IS66 | Rhizobium tropici | 32 | 3.2 | |
| ISPa56 | IS3 | IS2 | Pseudomonas aeruginosa | 32 | 3.2 |
| ISHla15 | IS200/IS605 | Halorubrum lacusprofundi | 32 | 3.2 | |
| ISHti4 | IS4 | IS50 | Halorhabdus tiamatea | 32 | 3.2 |
| ISHarch3 | IS200/IS605 | IS1341 | Halophilic archaeon | 32 | 3.2 |
| ISAba29 | IS3 | IS51 | Acinetobacter baumannii | 32 | 3.2 |
| ISIde1 | ISL3 | Ideonella dechloratans | 32 | 3.2 | |
| ISHmu6 | IS200/IS605 | Halomicrobium mukohataei | 32 | 3.2 | |
| ISHli11 | IS200/IS605 | Halohasta litchfieldiae | 32 | 3.2 | |
| ISGsi1 | IS256 | IS1249 | Gordonia sihwensis | 32 | 3.2 |
| ISSpwi2 | IS256 | Sphingomonas wittichii | 32 | 3.2 | |
| ISPa38 | Tn3 | Pseudomonas aeruginosa | 32 | 3.2 | |
| ISVsp16 | IS1182 | Verrucomicrobium spinosum | 32 | 3.2 | |
| ISRop2 | ISAzo13 | Rhodococcus opacus | 32 | 3.2 | |
| ISMno14 | IS110 | IS1111 | Methylobacterium nodulans | 32 | 3.2 |
| ISHwa2 | IS4 | IS50 | Haloquadratum walsbyi | 32 | 3.2 |
| ISPaen1 | IS1380 | Paenibacillus sp. | 32 | 3.2 | |
| ISRop1 | IS1380 | Rhodococcus opacus | 32 | 3.2 | |
| ISAzo1 | IS1182 | Azoarcus sp. | 32 | 3.2 | |
| ISAnsp12 | IS66 | Anaeromyxobacter sp. | 32 | 3.2 | |
| ISMdi27 | IS21 | Methylobacterium dichloromethanicum | 32 | 3.2 | |
| ISCARN102 | IS630 | Metagenomic data from CARNOULES | 32 | 3.2 | |
| ISCARN47 | IS256 | Metagenomic data from CARNOULES | 32 | 3.2 | |
| ISSav7 | IS481 | Streptomyces avermitilis | 32 | 3.2 | |
| ISThsp2 | IS21 | Thiomonas sp. | 32 | 3.2 | |
| ISBj7_B | IS66 | Bradyrhizobium japonicum | 32 | 3.2 | |
| ISAli8 | IS110 | Azospirillum lipoferum | 32 | 3.2 | |
| ISGob2 | IS66 | ISBst12 | Gemmata obscuriglobus | 32 | 3.2 |
| ISVei1 | IS3 | IS3 | Verminephrobacter eiseniae | 32 | 3.2 |
| ISMfl1 | IS4 | IS4 | Mycobacterium flavescens | 32 | 3.2 |
| ISFal1 | ISL3 | Frankia alni | 32 | 3.2 | |
| ISHma12 | IS200/IS605 | Haloarcula marismortui | 32 | 3.2 | |
| ISAzo6 | IS1634 | Azoarcus sp. | 32 | 3.2 | |
| IS882 | Tn3 | Ralstonia eutropha | 32 | 3.2 | |
| ISLxx1 | IS21 | Leifsonia xyli | 32 | 3.2 | |
| ISAzvi3 | IS110 | IS1111 | Azotobacter vinelandii | 32 | 3.2 |
| ISRso19 | IS21 | - | Ralstonia solanacearum | 32 | 3.2 |
| ISPpu7 | IS21 | - | Pseudomonas putida | 32 | 3.2 |
| ISPa42 | Tn3 | Pseudomonas aeruginosa | 32 | 3.2 | |
| ISH3C | ISH3 | Halobacterium sp. | 32 | 3.2 | |
| ISH27-3 | ISH3 | Halobacterium salinarum | 32 | 3.2 | |
| ISH27-2 | ISH3 | - | Halobacterium salinarum | 32 | 3.2 |
| IS1631 | IS21 | - | Bradyrhizobium japonicum | 32 | 3.2 |
| IS1491 | IS21 | - | Pseudomonas alcaligenes | 32 | 3.2 |
| IS1002 | IS481 | - | Bordetella parapertussis | 32 | 3.2 |
>ISFsp3
Length = 2209
Score = 50.1 bits (25), Expect = 1e-05
Identities = 61/73 (83%)
Strand = Plus / Plus
Query: 2244 cgtcgcggccgccctgctcgaccggctcctgcaccgctccgtcgtgctcaacctcgacgg 2303
|||||| |||||| || ||||||||||| | |||| | ||| || |||| ||||| |||
Sbjct: 2021 cgtcgccgccgccatgatcgaccggctcgtccaccacgccgaggtcctcaccctcgccgg 2080
Query: 2304 cgactcctaccgc 2316
|||||||||||||
Sbjct: 2081 cgactcctaccgc 2093
>ISGau7
Length = 2510
Score = 42.1 bits (21), Expect = 0.003
Identities = 48/57 (84%)
Strand = Plus / Plus
Query: 2217 ctggggcgaggtgctcggcgacaccaccgtcgcggccgccctgctcgaccggctcct 2273
||||||| || |||||||||||||| ||| || | || |||||||||||||||||
Sbjct: 2288 ctggggcaagctgctcggcgacaccgccgccgtcacggcgctgctcgaccggctcct 2344
>ISAnsp5
Length = 2192
Score = 38.2 bits (19), Expect = 0.053
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 2260 ctcgaccggctcctgcacc 2278
|||||||||||||||||||
Sbjct: 2018 ctcgaccggctcctgcacc 2036
>ISAnsp4
Length = 2195
Score = 38.2 bits (19), Expect = 0.053
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 2260 ctcgaccggctcctgcacc 2278
|||||||||||||||||||
Sbjct: 2024 ctcgaccggctcctgcacc 2042
Score = 34.2 bits (17), Expect = 0.82
Identities = 23/25 (92%)
Strand = Plus / Plus
Query: 1916 tcggtccgccgggcgtcggaaagac 1940
|||| |||||||||||||| |||||
Sbjct: 1680 tcggcccgccgggcgtcggcaagac 1704
>ISAzo10
Length = 1669
Score = 38.2 bits (19), Expect = 0.053
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 436 ttgcgcccggcgtgtgagc 454
|||||||||||||||||||
Sbjct: 617 ttgcgcccggcgtgtgagc 635
>ISCARN17
Length = 2539
Score = 36.2 bits (18), Expect = 0.21
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 2260 ctcgaccggctcctgcaccgct 2281
|||||||||||| |||||||||
Sbjct: 2389 ctcgaccggctcatgcaccgct 2410
>ISBad1
Length = 2525
Score = 36.2 bits (18), Expect = 0.21
Identities = 24/26 (92%)
Strand = Plus / Plus
Query: 2092 ctggtgatcgacgagcttggctacct 2117
||||| ||||||||||| ||||||||
Sbjct: 2170 ctggtcatcgacgagctgggctacct 2195
>ISAau4
Length = 3898
Score = 36.2 bits (18), Expect = 0.21
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 2288 tgctcaacctcgacggcg 2305
||||||||||||||||||
Sbjct: 2377 tgctcaacctcgacggcg 2394
Score = 32.2 bits (16), Expect = 3.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 1092 ctacgccgggaaccgg 1107
||||||||||||||||
Sbjct: 3532 ctacgccgggaaccgg 3547
>ISBcen28
Length = 2311
Score = 36.2 bits (18), Expect = 0.21
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 2257 ctgctcgaccggctcctgcacc 2278
|||||||||||||| |||||||
Sbjct: 2050 ctgctcgaccggctgctgcacc 2071
>IS1415
Length = 2580
Score = 36.2 bits (18), Expect = 0.21
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 2298 cgacggcgactcctaccgcctc 2319
|||||||||||||| |||||||
Sbjct: 2403 cgacggcgactccttccgcctc 2424
Score = 32.2 bits (16), Expect = 3.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 2263 gaccggctcctgcacc 2278
||||||||||||||||
Sbjct: 2368 gaccggctcctgcacc 2383
>TnAs3
Length = 18735
Score = 34.2 bits (17), Expect = 0.82
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 2092 ctggtgatcgacgagct 2108
|||||||||||||||||
Sbjct: 6901 ctggtgatcgacgagct 6917
>ISSav6
Length = 1244
Score = 34.2 bits (17), Expect = 0.82
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 2322 cgagcaccacgcccgcggcga 2342
|||||||||||| ||||||||
Sbjct: 1206 cgagcaccacgctcgcggcga 1226
>ISGeob4
Length = 982
Score = 34.2 bits (17), Expect = 0.82
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 2247 cgcggccgccctgctcg 2263
|||||||||||||||||
Sbjct: 679 cgcggccgccctgctcg 695
>ISRsp18
Length = 1560
Score = 34.2 bits (17), Expect = 0.82
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 1200 cgggcgtgaggcggcgc 1216
|||||||||||||||||
Sbjct: 1296 cgggcgtgaggcggcgc 1280
>ISMpo6
Length = 1593
Score = 34.2 bits (17), Expect = 0.82
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 471 gggccgtccggtcgcgg 487
|||||||||||||||||
Sbjct: 246 gggccgtccggtcgcgg 230
>ISMdi8
Length = 1002
Score = 34.2 bits (17), Expect = 0.82
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 776 tggccaagcactacggggtca 796
||||||||| |||||||||||
Sbjct: 142 tggccaagcgctacggggtca 162
>ISMex10
Length = 1754
Score = 34.2 bits (17), Expect = 0.82
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 1760 cccgccggctggccggg 1776
|||||||||||||||||
Sbjct: 380 cccgccggctggccggg 396
>ISMex13
Length = 2359
Score = 34.2 bits (17), Expect = 0.82
Identities = 23/25 (92%)
Strand = Plus / Plus
Query: 2254 gccctgctcgaccggctcctgcacc 2278
|||||||||||||| ||||| ||||
Sbjct: 2094 gccctgctcgaccgactcctccacc 2118
>ISThsp19
Length = 2657
Score = 34.2 bits (17), Expect = 0.82
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 1933 ggaaagacccatctggc 1949
|||||||||||||||||
Sbjct: 1979 ggaaagacccatctggc 1995
>ISAzo17
Length = 2095
Score = 34.2 bits (17), Expect = 0.82
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 1995 cttcaccaccgccgcagacct 2015
||||||||||||||| |||||
Sbjct: 1569 cttcaccaccgccgccgacct 1589
>ISChy4
Length = 2172
Score = 34.2 bits (17), Expect = 0.82
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 2185 atcatcctgaccagcaacaaa 2205
|||||||| ||||||||||||
Sbjct: 1917 atcatcctcaccagcaacaaa 1937
>ISCsp1
Length = 1393
Score = 34.2 bits (17), Expect = 0.82
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 1358 cgcccagcgccgaggcg 1374
|||||||||||||||||
Sbjct: 934 cgcccagcgccgaggcg 950
>ISMno25
Length = 1518
Score = 32.2 bits (16), Expect = 3.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 1011 cgagccgctcgcgccg 1026
||||||||||||||||
Sbjct: 662 cgagccgctcgcgccg 647
>ISMpo4
Length = 1767
Score = 32.2 bits (16), Expect = 3.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 1261 gccacgatccgcgacg 1276
||||||||||||||||
Sbjct: 50 gccacgatccgcgacg 35
>ISRtr5
Length = 2577
Score = 32.2 bits (16), Expect = 3.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 1019 tcgcgccgatgcccgc 1034
||||||||||||||||
Sbjct: 1443 tcgcgccgatgcccgc 1458
>ISPa56
Length = 1359
Score = 32.2 bits (16), Expect = 3.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 1076 cgcaggcgctggtctc 1091
||||||||||||||||
Sbjct: 119 cgcaggcgctggtctc 134
>ISHla15
Length = 1835
Score = 32.2 bits (16), Expect = 3.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 1730 tcctcgccgtcgaggt 1745
||||||||||||||||
Sbjct: 351 tcctcgccgtcgaggt 336
>ISHti4
Length = 1662
Score = 32.2 bits (16), Expect = 3.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 2391 ccgccaccagggtggg 2406
||||||||||||||||
Sbjct: 1395 ccgccaccagggtggg 1410
>ISHarch3
Length = 1819
Score = 32.2 bits (16), Expect = 3.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 970 accgccgacggacgcg 985
||||||||||||||||
Sbjct: 1156 accgccgacggacgcg 1171
>ISAba29
Length = 1309
Score = 32.2 bits (16), Expect = 3.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 2184 gatcatcctgaccagc 2199
||||||||||||||||
Sbjct: 749 gatcatcctgaccagc 764
>ISIde1
Length = 1448
Score = 32.2 bits (16), Expect = 3.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 1647 gcacgacgccgccgag 1662
||||||||||||||||
Sbjct: 1206 gcacgacgccgccgag 1191
>ISHmu6
Length = 1889
Score = 32.2 bits (16), Expect = 3.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 1730 tcctcgccgtcgaggt 1745
||||||||||||||||
Sbjct: 405 tcctcgccgtcgaggt 390
>ISHli11
Length = 1832
Score = 32.2 bits (16), Expect = 3.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 1730 tcctcgccgtcgaggt 1745
||||||||||||||||
Sbjct: 345 tcctcgccgtcgaggt 330
>ISGsi1
Length = 1310
Score = 32.2 bits (16), Expect = 3.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 1653 cgccgccgagcacctg 1668
||||||||||||||||
Sbjct: 897 cgccgccgagcacctg 912
>ISSpwi2
Length = 1322
Score = 32.2 bits (16), Expect = 3.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 1266 gatccgcgacgagggc 1281
||||||||||||||||
Sbjct: 576 gatccgcgacgagggc 591
>ISPa38
Length = 6455
Score = 32.2 bits (16), Expect = 3.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 2314 cgcctccgcgagcacc 2329
||||||||||||||||
Sbjct: 3019 cgcctccgcgagcacc 3034
>ISVsp16
Length = 1578
Score = 32.2 bits (16), Expect = 3.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 2352 cgccgccaccaccgcc 2367
||||||||||||||||
Sbjct: 1193 cgccgccaccaccgcc 1208
>ISRop2
Length = 2171
Score = 32.2 bits (16), Expect = 3.2
Identities = 22/24 (91%)
Strand = Plus / Plus
Query: 1995 cttcaccaccgccgcagacctcgc 2018
||||| |||||| |||||||||||
Sbjct: 1668 cttcagcaccgctgcagacctcgc 1691
>ISMno14
Length = 1428
Score = 32.2 bits (16), Expect = 3.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 1009 gccgagccgctcgcgc 1024
||||||||||||||||
Sbjct: 1064 gccgagccgctcgcgc 1049
>ISHwa2
Length = 1668
Score = 32.2 bits (16), Expect = 3.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 2391 ccgccaccagggtggg 2406
||||||||||||||||
Sbjct: 1401 ccgccaccagggtggg 1416
>ISPaen1
Length = 1851
Score = 32.2 bits (16), Expect = 3.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 2094 ggtgatcgacgagctt 2109
||||||||||||||||
Sbjct: 447 ggtgatcgacgagctt 432
>ISRop1
Length = 4160
Score = 32.2 bits (16), Expect = 3.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 1669 cccgccgtcctggaca 1684
||||||||||||||||
Sbjct: 3647 cccgccgtcctggaca 3662
>ISAzo1
Length = 1545
Score = 32.2 bits (16), Expect = 3.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 1074 cgcgcaggcgctggtc 1089
||||||||||||||||
Sbjct: 907 cgcgcaggcgctggtc 922
>ISAnsp12
Length = 2926
Score = 32.2 bits (16), Expect = 3.2
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 1372 gcgcgggccgaggccgaccg 1391
||||| ||||||||||||||
Sbjct: 1125 gcgcgcgccgaggccgaccg 1144
>ISMdi27
Length = 2476
Score = 32.2 bits (16), Expect = 3.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 1366 gccgaggcgcgggccg 1381
||||||||||||||||
Sbjct: 2029 gccgaggcgcgggccg 2044
>ISCARN102
Length = 1216
Score = 32.2 bits (16), Expect = 3.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 1236 ccggctcgccccggcc 1251
||||||||||||||||
Sbjct: 693 ccggctcgccccggcc 708
>ISCARN47
Length = 1368
Score = 32.2 bits (16), Expect = 3.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 582 gctcgtcggcgcgctg 597
||||||||||||||||
Sbjct: 1189 gctcgtcggcgcgctg 1204
>ISSav7
Length = 2992
Score = 32.2 bits (16), Expect = 3.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 2117 tcgcccttcccgccga 2132
||||||||||||||||
Sbjct: 1478 tcgcccttcccgccga 1493
>ISThsp2
Length = 2644
Score = 32.2 bits (16), Expect = 3.2
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 2252 ccgccctgctcgaccggctc 2271
||||| ||||||||||||||
Sbjct: 2275 ccgccttgctcgaccggctc 2294
>ISBj7_B
Length = 2865
Score = 32.2 bits (16), Expect = 3.2
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 1635 cgcgctcaagctgcacgacg 1654
|||||||||||||| |||||
Sbjct: 1846 cgcgctcaagctgctcgacg 1865
>ISAli8
Length = 1151
Score = 32.2 bits (16), Expect = 3.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 320 ggcagcggctggacga 335
||||||||||||||||
Sbjct: 750 ggcagcggctggacga 765
>ISGob2
Length = 1575
Score = 32.2 bits (16), Expect = 3.2
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 483 cgcggtgatcgagcacccgc 502
||||||||||| ||||||||
Sbjct: 1174 cgcggtgatcgcgcacccgc 1155
>ISVei1
Length = 1214
Score = 32.2 bits (16), Expect = 3.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 1430 ccgtggtgatcgacct 1445
||||||||||||||||
Sbjct: 730 ccgtggtgatcgacct 745
>ISMfl1
Length = 1457
Score = 32.2 bits (16), Expect = 3.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 1835 ccgcacccgcggtcga 1850
||||||||||||||||
Sbjct: 959 ccgcacccgcggtcga 974
>ISFal1
Length = 1736
Score = 32.2 bits (16), Expect = 3.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 1554 acccaccagcagctcc 1569
||||||||||||||||
Sbjct: 200 acccaccagcagctcc 185
>ISHma12
Length = 1835
Score = 32.2 bits (16), Expect = 3.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 1730 tcctcgccgtcgaggt 1745
||||||||||||||||
Sbjct: 351 tcctcgccgtcgaggt 336
>ISAzo6
Length = 1925
Score = 32.2 bits (16), Expect = 3.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 1152 cgtccggctcggcgcc 1167
||||||||||||||||
Sbjct: 1738 cgtccggctcggcgcc 1753
>IS882
Length = 3363
Score = 32.2 bits (16), Expect = 3.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 1302 cgccgtgctggccgcg 1317
||||||||||||||||
Sbjct: 1096 cgccgtgctggccgcg 1081
>ISLxx1
Length = 2205
Score = 32.2 bits (16), Expect = 3.2
Identities = 46/56 (82%)
Strand = Plus / Plus
Query: 2261 tcgaccggctcctgcaccgctccgtcgtgctcaacctcgacggcgactcctaccgc 2316
||||||| ||| | |||| ||||| || |||| |||| |||| ||||||||||||
Sbjct: 2036 tcgaccgcctcgtccaccactccgaagtcctcaccctcaacggagactcctaccgc 2091
>ISAzvi3
Length = 1424
Score = 32.2 bits (16), Expect = 3.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 767 tcgccgcggtggccaa 782
||||||||||||||||
Sbjct: 1060 tcgccgcggtggccaa 1075
>ISRso19
Length = 1956
Score = 32.2 bits (16), Expect = 3.2
Identities = 25/28 (89%)
Strand = Plus / Plus
Query: 2249 cggccgccctgctcgaccggctcctgca 2276
|||| ||| |||||||||||||| ||||
Sbjct: 1752 cggcagccatgctcgaccggctcttgca 1779
>ISPpu7
Length = 2598
Score = 32.2 bits (16), Expect = 3.2
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 2350 cgcgccgccaccaccgccac 2369
||||||| ||||||||||||
Sbjct: 920 cgcgccggcaccaccgccac 901
>ISPa42
Length = 16941
Score = 32.2 bits (16), Expect = 3.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 1373 cgcgggccgaggccga 1388
||||||||||||||||
Sbjct: 6294 cgcgggccgaggccga 6309
>ISH3C
Length = 1389
Score = 32.2 bits (16), Expect = 3.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 965 gcgcgaccgccgacgg 980
||||||||||||||||
Sbjct: 193 gcgcgaccgccgacgg 208
>ISH27-3
Length = 1389
Score = 32.2 bits (16), Expect = 3.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 965 gcgcgaccgccgacgg 980
||||||||||||||||
Sbjct: 193 gcgcgaccgccgacgg 208
>ISH27-2
Length = 1389
Score = 32.2 bits (16), Expect = 3.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 965 gcgcgaccgccgacgg 980
||||||||||||||||
Sbjct: 193 gcgcgaccgccgacgg 208
>IS1631
Length = 2712
Score = 32.2 bits (16), Expect = 3.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 1813 ctcgccgagttcgact 1828
||||||||||||||||
Sbjct: 2083 ctcgccgagttcgact 2098
>IS1491
Length = 2481
Score = 32.2 bits (16), Expect = 3.2
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 2350 cgcgccgccaccaccgccac 2369
||||||| ||||||||||||
Sbjct: 850 cgcgccggcaccaccgccac 831
>IS1002
Length = 1030
Score = 32.2 bits (16), Expect = 3.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 982 cgcgccacggtggcca 997
||||||||||||||||
Sbjct: 399 cgcgccacggtggcca 384
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_44_length_2017_cov_123.358_ID_5256
(2017 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISMsm5 | IS630 | Mycobacterium smegmatis | 50 | 1e-05 | |
| ISMex12 | IS110 | Methylobacterium extorquens | 40 | 0.011 | |
| ISPko3 | IS5 | IS903 | Paracoccus kondratievae | 36 | 0.17 |
| ISPko1 | IS5 | IS903 | Paracoccus kondratievae | 36 | 0.17 |
| ISPlc1 | IS5 | IS903 | Paracoccus alcaliphilus | 36 | 0.17 |
| ISRce1 | ISAs1 | Rhodospirillum centenum | 36 | 0.17 | |
| ISThsp10 | IS21 | Thiomonas sp. | 36 | 0.17 | |
| ISSpo9 | IS5 | IS903 | Silicibacter pomeroyi | 36 | 0.17 |
| TnAs3 | Tn3 | Aeromonas salmonicida | 34 | 0.68 | |
| ISMdi24 | IS5 | IS427 | Methylobacterium dichloromethanicum | 34 | 0.68 |
| ISMex13 | IS21 | Methylobacterium extorquens | 34 | 0.68 | |
| ISRm1 | IS3 | IS2 | Rhizobium meliloti | 34 | 0.68 |
| Tn5403 | Tn3 | Klebsiella pneumoniae | 32 | 2.7 | |
| ISHarch19 | IS200/IS605 | IS1341 | Halophilic archaeon | 32 | 2.7 |
| ISMno16 | IS110 | IS1111 | Methylobacterium nodulans | 32 | 2.7 |
| ISSoc12 | IS200/IS605 | IS1341 | Synechococcus sp | 32 | 2.7 |
| ISHhu2 | IS200/IS605 | Halobacterium hubeiense | 32 | 2.7 | |
| ISHal1 | IS200/IS605 | Haloferax alexandrinus | 32 | 2.7 | |
| ISPebe1 | IS256 | Pelagibaca bermudensis | 32 | 2.7 | |
| ISPa43 | Tn3 | Pseudomonas aeruginosa | 32 | 2.7 | |
| ISPa34 | IS110 | IS1111 | Pseudomonas aeruginosa | 32 | 2.7 |
| ISArsp6 | Tn3 | Arthrobacter sp. | 32 | 2.7 | |
| ISAar41 | IS110 | Arthrobacter arilaitensis | 32 | 2.7 | |
| ISAzba7 | IS5 | IS427 | Azospirillum brasilense | 32 | 2.7 |
| ISMdi4 | IS481 | Methylobacterium dichloromethanicum | 32 | 2.7 | |
| ISThsp11 | IS3 | IS3 | Thiomonas sp. | 32 | 2.7 |
| ISAzo15 | IS66 | Azoarcus sp. | 32 | 2.7 | |
| ISKpn4 | IS110 | IS1111 | Klebsiella pneumoniae | 32 | 2.7 |
| ISAzvi9 | IS3 | IS3 | Azotobacter vinelandii | 32 | 2.7 |
| ISFsp1 | ISL3 | Frankia sp. | 32 | 2.7 | |
| ISMt3 | IS21 | - | Mycobacterium tuberculosis | 32 | 2.7 |
| ISMbo1 | IS21 | - | Mycobacterium bovis | 32 | 2.7 |
| IS6120 | IS256 | - | Mycobacterium smegmatis | 32 | 2.7 |
>ISMsm5
Length = 1103
Score = 50.1 bits (25), Expect = 1e-05
Identities = 57/67 (85%), Gaps = 3/67 (4%)
Strand = Plus / Minus
Query: 1944 gtgtcgcgcgtctgagtttcgtttacgggtggcgtggggcaggatctggtcagcggtctt 2003
||||||||||||||| || ||||||| ||| ||||||||||| | ||| ||||||||
Sbjct: 1103 gtgtcgcgcgtctgaagtttgtttacgagtg---tggggcaggatttcgtcggcggtctt 1047
Query: 2004 ggtccac 2010
|||||||
Sbjct: 1046 ggtccac 1040
>ISMex12
Length = 1418
Score = 40.1 bits (20), Expect = 0.011
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 1584 tcggccgtggcctcgatgacgtcg 1607
|||||||||||||||||| |||||
Sbjct: 880 tcggccgtggcctcgatggcgtcg 857
>ISPko3
Length = 1017
Score = 36.2 bits (18), Expect = 0.17
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 591 gtcgagggcgaaggcgag 608
||||||||||||||||||
Sbjct: 442 gtcgagggcgaaggcgag 459
>ISPko1
Length = 1050
Score = 36.2 bits (18), Expect = 0.17
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 591 gtcgagggcgaaggcgag 608
||||||||||||||||||
Sbjct: 442 gtcgagggcgaaggcgag 459
>ISPlc1
Length = 1050
Score = 36.2 bits (18), Expect = 0.17
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 591 gtcgagggcgaaggcgag 608
||||||||||||||||||
Sbjct: 442 gtcgagggcgaaggcgag 459
>ISRce1
Length = 1267
Score = 36.2 bits (18), Expect = 0.17
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 1424 cgctcatcccgcgggtcc 1441
||||||||||||||||||
Sbjct: 177 cgctcatcccgcgggtcc 160
>ISThsp10
Length = 2501
Score = 36.2 bits (18), Expect = 0.17
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 1365 gagggccaggaaggccggcacg 1386
||||||| ||||||||||||||
Sbjct: 909 gagggccgggaaggccggcacg 888
>ISSpo9
Length = 1049
Score = 36.2 bits (18), Expect = 0.17
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 591 gtcgagggcgaaggcgag 608
||||||||||||||||||
Sbjct: 441 gtcgagggcgaaggcgag 458
>TnAs3
Length = 18735
Score = 34.2 bits (17), Expect = 0.68
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 1127 tgacgacgccgagtccc 1143
|||||||||||||||||
Sbjct: 9014 tgacgacgccgagtccc 9030
>ISMdi24
Length = 849
Score = 34.2 bits (17), Expect = 0.68
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 437 gcagcacgcgatgcagg 453
|||||||||||||||||
Sbjct: 296 gcagcacgcgatgcagg 280
>ISMex13
Length = 2359
Score = 34.2 bits (17), Expect = 0.68
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 251 ggacgagggggaggtagccga 271
|||||| ||||||||||||||
Sbjct: 1968 ggacgacggggaggtagccga 1948
>ISRm1
Length = 1319
Score = 34.2 bits (17), Expect = 0.68
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 591 gtcgagggcgaaggcga 607
|||||||||||||||||
Sbjct: 864 gtcgagggcgaaggcga 848
>Tn5403
Length = 3663
Score = 32.2 bits (16), Expect = 2.7
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 896 cgagcaggacgttgag 911
||||||||||||||||
Sbjct: 2552 cgagcaggacgttgag 2537
>ISHarch19
Length = 1624
Score = 32.2 bits (16), Expect = 2.7
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 369 cagcccgacgacgacg 384
||||||||||||||||
Sbjct: 1568 cagcccgacgacgacg 1553
>ISMno16
Length = 1404
Score = 32.2 bits (16), Expect = 2.7
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 685 accagcagcgccgcgc 700
||||||||||||||||
Sbjct: 763 accagcagcgccgcgc 748
>ISSoc12
Length = 1442
Score = 32.2 bits (16), Expect = 2.7
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 1972 gtggcgtggggcagga 1987
||||||||||||||||
Sbjct: 1362 gtggcgtggggcagga 1377
>ISHhu2
Length = 1846
Score = 32.2 bits (16), Expect = 2.7
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 1603 cgtcggtgaggaggtc 1618
||||||||||||||||
Sbjct: 234 cgtcggtgaggaggtc 219
>ISHal1
Length = 1846
Score = 32.2 bits (16), Expect = 2.7
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 1603 cgtcggtgaggaggtc 1618
||||||||||||||||
Sbjct: 235 cgtcggtgaggaggtc 220
>ISPebe1
Length = 1363
Score = 32.2 bits (16), Expect = 2.7
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 1066 gcctcggaggccccga 1081
||||||||||||||||
Sbjct: 701 gcctcggaggccccga 686
>ISPa43
Length = 19903
Score = 32.2 bits (16), Expect = 2.7
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 1979 ggggcaggatctggtc 1994
||||||||||||||||
Sbjct: 1692 ggggcaggatctggtc 1677
>ISPa34
Length = 1216
Score = 32.2 bits (16), Expect = 2.7
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 1254 accggccgccgtgagc 1269
||||||||||||||||
Sbjct: 115 accggccgccgtgagc 130
>ISArsp6
Length = 26712
Score = 32.2 bits (16), Expect = 2.7
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 684 gaccagcagcgccgcg 699
||||||||||||||||
Sbjct: 5526 gaccagcagcgccgcg 5541
>ISAar41
Length = 1346
Score = 32.2 bits (16), Expect = 2.7
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 1738 actcgacggccagcccgggg 1757
||||| ||||||||||||||
Sbjct: 989 actcggcggccagcccgggg 970
>ISAzba7
Length = 852
Score = 32.2 bits (16), Expect = 2.7
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 437 gcagcacgcgatgcag 452
||||||||||||||||
Sbjct: 299 gcagcacgcgatgcag 284
>ISMdi4
Length = 1053
Score = 32.2 bits (16), Expect = 2.7
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 1056 gacgatgaccgcctcg 1071
||||||||||||||||
Sbjct: 272 gacgatgaccgcctcg 257
>ISThsp11
Length = 1814
Score = 32.2 bits (16), Expect = 2.7
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 1121 ctgccgtgacgacgcc 1136
||||||||||||||||
Sbjct: 54 ctgccgtgacgacgcc 39
>ISAzo15
Length = 2441
Score = 32.2 bits (16), Expect = 2.7
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 1980 gggcaggatctggtca 1995
||||||||||||||||
Sbjct: 1254 gggcaggatctggtca 1269
>ISKpn4
Length = 1377
Score = 32.2 bits (16), Expect = 2.7
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 686 ccagcagcgccgcgcg 701
||||||||||||||||
Sbjct: 922 ccagcagcgccgcgcg 907
>ISAzvi9
Length = 1246
Score = 32.2 bits (16), Expect = 2.7
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 1296 ggccagctcggccgtc 1311
||||||||||||||||
Sbjct: 868 ggccagctcggccgtc 853
>ISFsp1
Length = 1732
Score = 32.2 bits (16), Expect = 2.7
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 1541 cagcgcccacccgatcgcct 1560
||||||| ||||||||||||
Sbjct: 435 cagcgccaacccgatcgcct 416
>ISMt3
Length = 2213
Score = 32.2 bits (16), Expect = 2.7
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 494 cccagcgcgtcatcgt 509
||||||||||||||||
Sbjct: 1312 cccagcgcgtcatcgt 1297
>ISMbo1
Length = 2212
Score = 32.2 bits (16), Expect = 2.7
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 494 cccagcgcgtcatcgt 509
||||||||||||||||
Sbjct: 1312 cccagcgcgtcatcgt 1297
>IS6120
Length = 1486
Score = 32.2 bits (16), Expect = 2.7
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 908 tgagggcgatgttggc 923
||||||||||||||||
Sbjct: 1417 tgagggcgatgttggc 1402
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_45_length_1965_cov_253.339_ID_5258
(1965 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISSav5 | IS481 | Streptomyces avermitilis | 66 | 2e-10 | |
| ISVei2 | IS481 | Verminephrobacter eiseniae | 50 | 1e-05 | |
| ISVei3 | IS481 | Verminephrobacter eiseniae | 50 | 1e-05 | |
| ISMav5 | IS481 | Mycobacterium avium | 46 | 2e-04 | |
| ISSco2 | IS481 | Streptomyces coelicolor | 46 | 2e-04 | |
| ISMav2 | IS481 | - | Mycobacterium avium | 46 | 2e-04 |
| ISKpn27 | IS481 | Klebsiella pneumoniae | 42 | 0.003 | |
| ISMva2 | IS481 | Mycobacterium vanbaalenii | 40 | 0.011 | |
| ISMyma5 | IS481 | - | Mycobacterium marinum | 40 | 0.011 |
| ISKrh3 | IS481 | Kocuria rhizophila | 38 | 0.042 | |
| ISDge6 | IS5 | ISL2 | Deinococcus geothermalis | 38 | 0.042 |
| ISAnsp5 | IS21 | Anaeromyxobacter sp. | 36 | 0.17 | |
| ISKrh2 | IS481 | Kocuria rhizophila | 36 | 0.17 | |
| ISCmi2 | IS481 | Clavibacter michiganensis | 36 | 0.17 | |
| ISXau1 | IS3 | IS407 | Xanthobacter autotrophicus | 36 | 0.17 |
| ISTdr1 | IS256 | Thiorhodococcus drewsii | 34 | 0.66 | |
| ISPfr17 | IS481 | Propionibacterium freudenreichii | 34 | 0.66 | |
| ISAar28 | IS481 | Arthrobacter arilaitensis | 34 | 0.66 | |
| ISKpn7 | IS21 | Klebsiella pneumoniae | 34 | 0.66 | |
| ISCte4 | IS481 | Comamonas testosteroni | 34 | 0.66 | |
| ISRae1 | IS481 | Rhodococcus aetherivorans | 34 | 0.66 | |
| IS1403 | IS3 | IS407 | Xanthomonas campestris | 34 | 0.66 |
| IS1389-B | IS3 | IS407 | Xanthomonas campestris | 34 | 0.66 |
| IS1112b | IS30 | - | Xanthomonas oryzae | 34 | 0.66 |
| IS1112a | IS30 | - | Xanthomonas oryzae | 34 | 0.66 |
| IS1112 | IS30 | - | Xanthomonas oryzae | 34 | 0.66 |
| TnXo19 | Tn3 | Xanthomonas oryzae | 32 | 2.6 | |
| ISHel2 | IS200/IS605 | IS605 | Haloferax elongans | 32 | 2.6 |
| ISNamo4 | IS5 | Natronomonas moolapensis | 32 | 2.6 | |
| ISNml4 | IS256 | Nakamurella multipartita | 32 | 2.6 | |
| ISRm20 | IS481 | Sinorhizobium meliloti | 32 | 2.6 | |
| ISMno34 | IS6 | Methylobacterium nodulans | 32 | 2.6 | |
| ISMno9 | IS1182 | Methylobacterium nodulans | 32 | 2.6 | |
| ISMav7 | IS1380 | Mycobacterium avium | 32 | 2.6 | |
| ISMgi1 | IS1380 | Mycobacterium gilvum | 32 | 2.6 | |
| ISMdi11 | IS481 | Methylobacterium dichloromethanicum | 32 | 2.6 | |
| ISVsa13 | ISAs1 | Aliivibrio salmonicida | 32 | 2.6 | |
| ISThsp12 | IS1634 | Thiomonas sp. | 32 | 2.6 | |
| ISCARN74 | IS5 | IS5 | Metagenomic data from CARNOULES | 32 | 2.6 |
| ISCARN16 | IS21 | Metagenomic data from CARNOULES | 32 | 2.6 | |
| ISGebe1 | IS481 | Geobacter bemidjiensis | 32 | 2.6 | |
| ISGob4 | IS66 | ISBst12 | Gemmata obscuriglobus | 32 | 2.6 |
| ISUnCu4 | IS30 | Plasmid QKH54 | 32 | 2.6 | |
| ISBcen13 | IS21 | Burkholderia cenocepacia | 32 | 2.6 | |
| ISPa47 | IS630 | Pseudomonas aeruginosa | 32 | 2.6 | |
| IS1549 | IS1634 | - | Mycobacterium smegmatis | 32 | 2.6 |
| IS1121 | IS481 | - | Clavibacter michiganensis | 32 | 2.6 |
>ISSav5
Length = 1953
Score = 65.9 bits (33), Expect = 2e-10
Identities = 99/121 (81%)
Strand = Plus / Minus
Query: 1189 cggtgaactgcttgccgttgtcggtgatcacctcctccggcaccccgaacgccgccaacg 1248
||||||||||||||||||||||||| | |||||||| ||||| |||||| | ||| ||
Sbjct: 742 cggtgaactgcttgccgttgtcggtcagtacctcctcgggcactccgaaccgcaccagcg 683
Query: 1249 cctgcgcgaacgccaaacacaccgcccgccccgtggcccgctccaccaccaccgcgatca 1308
| | | |||| ||| |||| ||||| || |||||||||||| |||||| ||||||||
Sbjct: 682 cttccccgaaggccgaacagaccgcgcgggccgtggcccgctggaccaccttcgcgatca 623
Query: 1309 c 1309
|
Sbjct: 622 c 622
Score = 42.1 bits (21), Expect = 0.003
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 1650 tgcggacacgaggagggccggtgcgaccg 1678
||||||||||||| ||||||||||||||
Sbjct: 302 tgcggacacgaggccggccggtgcgaccg 274
Score = 34.2 bits (17), Expect = 0.66
Identities = 26/29 (89%)
Strand = Plus / Minus
Query: 642 gccggaccgagccagaactgctgcccgcg 670
||||| |||| ||||| ||||||||||||
Sbjct: 1232 gccgggccgaaccagatctgctgcccgcg 1204
>ISVei2
Length = 1082
Score = 50.1 bits (25), Expect = 1e-05
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 1185 cggtcggtgaactgcttgccgttgtcggt 1213
||||||||||||| |||||||||||||||
Sbjct: 741 cggtcggtgaactccttgccgttgtcggt 713
>ISVei3
Length = 1080
Score = 50.1 bits (25), Expect = 1e-05
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 1185 cggtcggtgaactgcttgccgttgtcggt 1213
||||||||||||| |||||||||||||||
Sbjct: 739 cggtcggtgaactccttgccgttgtcggt 711
>ISMav5
Length = 1357
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 1665 ggccggtgcgaccgatccaccagcccc 1691
||||| |||||||||||||||||||||
Sbjct: 283 ggccgatgcgaccgatccaccagcccc 257
>ISSco2
Length = 1964
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 1184 ccggtcggtgaactgcttgccgttgtc 1210
|||| ||||||||||||||||||||||
Sbjct: 754 ccggccggtgaactgcttgccgttgtc 728
>ISMav2
Length = 1361
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 1665 ggccggtgcgaccgatccaccagcccc 1691
||||| |||||||||||||||||||||
Sbjct: 287 ggccgatgcgaccgatccaccagcccc 261
Score = 34.2 bits (17), Expect = 0.66
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 1391 cccgccgacgatgtcga 1407
|||||||||||||||||
Sbjct: 555 cccgccgacgatgtcga 539
>ISKpn27
Length = 1080
Score = 42.1 bits (21), Expect = 0.003
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 1185 cggtcggtgaactgcttgccgttgtcggt 1213
|||||||||||||| |||||||||||||
Sbjct: 736 cggtcggtgaactggctgccgttgtcggt 708
>ISMva2
Length = 1966
Score = 40.1 bits (20), Expect = 0.011
Identities = 32/36 (88%)
Strand = Plus / Minus
Query: 1391 cccgccgacgatgtcgatcccccacagctgcatcgg 1426
|||||| | |||||||||| |||||||||||||||
Sbjct: 555 cccgcccatgatgtcgatctgccacagctgcatcgg 520
>ISMyma5
Length = 1838
Score = 40.1 bits (20), Expect = 0.011
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 1179 ccgaaccggtcggtgaactgcttgccgttgtc 1210
||||||||| |||||||| ||||||||||||
Sbjct: 822 ccgaaccggccggtgaacaccttgccgttgtc 791
>ISKrh3
Length = 1113
Score = 38.2 bits (19), Expect = 0.042
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1063 accgctcgaccttcccgtt 1081
|||||||||||||||||||
Sbjct: 930 accgctcgaccttcccgtt 912
>ISDge6
Length = 1117
Score = 38.2 bits (19), Expect = 0.042
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 320 gtccaggtcgaagaacatc 338
|||||||||||||||||||
Sbjct: 313 gtccaggtcgaagaacatc 295
>ISAnsp5
Length = 2192
Score = 36.2 bits (18), Expect = 0.17
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 1574 gatccgcttcgcgcccca 1591
||||||||||||||||||
Sbjct: 191 gatccgcttcgcgcccca 174
Score = 34.2 bits (17), Expect = 0.66
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 379 cgaggatctccgcggcgagga 399
|||||||| ||||||||||||
Sbjct: 2021 cgaggatcgccgcggcgagga 2001
>ISKrh2
Length = 1122
Score = 36.2 bits (18), Expect = 0.17
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 1203 ccgttgtcggtgatcacc 1220
||||||||||||||||||
Sbjct: 832 ccgttgtcggtgatcacc 815
>ISCmi2
Length = 1054
Score = 36.2 bits (18), Expect = 0.17
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 1065 cgctcgaccttcccgttc 1082
||||||||||||||||||
Sbjct: 881 cgctcgaccttcccgttc 864
>ISXau1
Length = 1272
Score = 36.2 bits (18), Expect = 0.17
Identities = 24/26 (92%)
Strand = Plus / Minus
Query: 947 gtgcggccggtcggtgttgtactcga 972
|||||| |||||||||||||| ||||
Sbjct: 1095 gtgcggtcggtcggtgttgtaatcga 1070
>ISTdr1
Length = 1384
Score = 34.2 bits (17), Expect = 0.66
Identities = 23/25 (92%)
Strand = Plus / Minus
Query: 1286 ccgctccaccaccaccgcgatcacg 1310
||||||||||||||| ||| |||||
Sbjct: 375 ccgctccaccaccacggcggtcacg 351
>ISPfr17
Length = 1092
Score = 34.2 bits (17), Expect = 0.66
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 1061 gaaccgctcgaccttcccgtt 1081
||||||||||||||| |||||
Sbjct: 923 gaaccgctcgaccttgccgtt 903
>ISAar28
Length = 1593
Score = 34.2 bits (17), Expect = 0.66
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 1316 ccgggaatggtcatcga 1332
|||||||||||||||||
Sbjct: 680 ccgggaatggtcatcga 664
>ISKpn7
Length = 1956
Score = 34.2 bits (17), Expect = 0.66
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 1140 ttgtcgaacaacacctc 1156
|||||||||||||||||
Sbjct: 643 ttgtcgaacaacacctc 627
>ISCte4
Length = 1019
Score = 34.2 bits (17), Expect = 0.66
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 1202 gccgttgtcggtgatca 1218
|||||||||||||||||
Sbjct: 736 gccgttgtcggtgatca 720
>ISRae1
Length = 1111
Score = 34.2 bits (17), Expect = 0.66
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 1065 cgctcgaccttcccgtt 1081
|||||||||||||||||
Sbjct: 926 cgctcgaccttcccgtt 910
>IS1403
Length = 1203
Score = 34.2 bits (17), Expect = 0.66
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 1194 aactgcttgccgttgtcggtg 1214
|||| ||||||||||||||||
Sbjct: 882 aactccttgccgttgtcggtg 862
>IS1389-B
Length = 1203
Score = 34.2 bits (17), Expect = 0.66
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 1194 aactgcttgccgttgtcggtg 1214
|||| ||||||||||||||||
Sbjct: 882 aactccttgccgttgtcggtg 862
>IS1112b
Length = 1055
Score = 34.2 bits (17), Expect = 0.66
Identities = 23/25 (92%)
Strand = Plus / Minus
Query: 1188 tcggtgaactgcttgccgttgtcgg 1212
|||| ||||| ||||||||||||||
Sbjct: 783 tcggcgaactccttgccgttgtcgg 759
>IS1112a
Length = 1055
Score = 34.2 bits (17), Expect = 0.66
Identities = 23/25 (92%)
Strand = Plus / Minus
Query: 1188 tcggtgaactgcttgccgttgtcgg 1212
|||| ||||| ||||||||||||||
Sbjct: 783 tcggcgaactccttgccgttgtcgg 759
>IS1112
Length = 1055
Score = 34.2 bits (17), Expect = 0.66
Identities = 23/25 (92%)
Strand = Plus / Minus
Query: 1188 tcggtgaactgcttgccgttgtcgg 1212
|||| ||||| ||||||||||||||
Sbjct: 783 tcggcgaactccttgccgttgtcgg 759
>TnXo19
Length = 18767
Score = 32.2 bits (16), Expect = 2.6
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 444 cgttcgacctcgacca 459
||||||||||||||||
Sbjct: 2271 cgttcgacctcgacca 2256
>ISHel2
Length = 1975
Score = 32.2 bits (16), Expect = 2.6
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 581 gccgatggtcaggtgg 596
||||||||||||||||
Sbjct: 1903 gccgatggtcaggtgg 1918
>ISNamo4
Length = 1069
Score = 32.2 bits (16), Expect = 2.6
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 130 gcgcgtggacgcggcc 145
||||||||||||||||
Sbjct: 950 gcgcgtggacgcggcc 935
>ISNml4
Length = 1462
Score = 32.2 bits (16), Expect = 2.6
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 133 cgtggacgcggccgag 148
||||||||||||||||
Sbjct: 295 cgtggacgcggccgag 310
>ISRm20
Length = 1265
Score = 32.2 bits (16), Expect = 2.6
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 1317 cgggaatggtcatcga 1332
||||||||||||||||
Sbjct: 589 cgggaatggtcatcga 574
>ISMno34
Length = 889
Score = 32.2 bits (16), Expect = 2.6
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 1565 ctccatccggatccgc 1580
||||||||||||||||
Sbjct: 358 ctccatccggatccgc 373
>ISMno9
Length = 1548
Score = 32.2 bits (16), Expect = 2.6
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 447 tcgacctcgaccacgc 462
||||||||||||||||
Sbjct: 762 tcgacctcgaccacgc 777
>ISMav7
Length = 1691
Score = 32.2 bits (16), Expect = 2.6
Identities = 22/24 (91%)
Strand = Plus / Minus
Query: 1386 cggatcccgccgacgatgtcgatc 1409
|||||||||||| || ||||||||
Sbjct: 990 cggatcccgccgtcggtgtcgatc 967
>ISMgi1
Length = 1614
Score = 32.2 bits (16), Expect = 2.6
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 1393 cgccgacgatgtcgat 1408
||||||||||||||||
Sbjct: 429 cgccgacgatgtcgat 444
>ISMdi11
Length = 1053
Score = 32.2 bits (16), Expect = 2.6
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 1120 tcgcgttccggcggca 1135
||||||||||||||||
Sbjct: 271 tcgcgttccggcggca 286
>ISVsa13
Length = 1226
Score = 32.2 bits (16), Expect = 2.6
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 819 gcttcgggttgagcca 834
||||||||||||||||
Sbjct: 1098 gcttcgggttgagcca 1113
>ISThsp12
Length = 2004
Score = 32.2 bits (16), Expect = 2.6
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 1943 gcgcatcacccggcacagga 1962
||||||||||||| ||||||
Sbjct: 1730 gcgcatcacccggtacagga 1711
>ISCARN74
Length = 1203
Score = 32.2 bits (16), Expect = 2.6
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 1451 cgcgctgcgcggcttc 1466
||||||||||||||||
Sbjct: 322 cgcgctgcgcggcttc 337
>ISCARN16
Length = 2594
Score = 32.2 bits (16), Expect = 2.6
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 1939 tgtcgcgcatcacccggcac 1958
||||| ||||||||||||||
Sbjct: 1992 tgtcgggcatcacccggcac 2011
>ISGebe1
Length = 1269
Score = 32.2 bits (16), Expect = 2.6
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 1315 accgggaatggtcatc 1330
||||||||||||||||
Sbjct: 599 accgggaatggtcatc 584
>ISGob4
Length = 1576
Score = 32.2 bits (16), Expect = 2.6
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 1522 gcaccgcgggcaccgt 1537
||||||||||||||||
Sbjct: 557 gcaccgcgggcaccgt 542
>ISUnCu4
Length = 1113
Score = 32.2 bits (16), Expect = 2.6
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 1184 ccggtcggtgaactgc 1199
||||||||||||||||
Sbjct: 434 ccggtcggtgaactgc 449
>ISBcen13
Length = 1957
Score = 32.2 bits (16), Expect = 2.6
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 1706 caggtaccgcgccacc 1721
||||||||||||||||
Sbjct: 206 caggtaccgcgccacc 191
>ISPa47
Length = 1107
Score = 32.2 bits (16), Expect = 2.6
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 742 ccgccagcgctgtggt 757
||||||||||||||||
Sbjct: 376 ccgccagcgctgtggt 391
>IS1549
Length = 1640
Score = 32.2 bits (16), Expect = 2.6
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 509 cgcaccctgcgcggca 524
||||||||||||||||
Sbjct: 1109 cgcaccctgcgcggca 1124
>IS1121
Length = 1068
Score = 32.2 bits (16), Expect = 2.6
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 1065 cgctcgaccttcccgttctg 1084
||||||||||| ||||||||
Sbjct: 896 cgctcgaccttgccgttctg 877
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_46_length_1609_cov_1028.25_ID_5260
(1609 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISBlo4 | IS30 | Bifidobacterium longum | 141 | 3e-33 | |
| ISLxc3 | IS30 | Leifsonia xyli | 121 | 3e-27 | |
| ISLxx5 | IS30 | Leifsonia xyli | 105 | 2e-22 | |
| ISPsp8 | IS30 | Pseudomonas sp. | 101 | 3e-21 | |
| ISPsp7 | IS30 | Pseudomonas sp. | 101 | 3e-21 | |
| ISPfr9 | IS30 | Propionibacterium freudenreichii | 100 | 1e-20 | |
| ISCmi3 | IS30 | Clavibacter michiganensis | 98 | 4e-20 | |
| ISPfr16 | IS30 | Propionibacterium freudenreichii | 90 | 1e-17 | |
| ISMdi25 | IS30 | Methylobacterium dichloromethanicum | 88 | 4e-17 | |
| IS1086 | IS30 | - | Ralstonia metallidurans | 86 | 2e-16 |
| IS1394 | IS30 | - | Pseudomonas alcaligenes | 80 | 1e-14 |
| ISPfr14 | IS30 | Propionibacterium freudenreichii | 76 | 2e-13 | |
| ISPst1 | IS30 | - | Pseudomonas stutzeri | 70 | 1e-11 |
| IS1382 | IS30 | - | Pseudomonas putida | 70 | 1e-11 |
| ISShes10 | IS30 | Shewanella sp. | 64 | 6e-10 | |
| ISLxc4 | IS30 | Leifsonia xyli | 64 | 6e-10 | |
| ISPsp4 | IS30 | Pseudomonas sp. | 64 | 6e-10 | |
| IS1088 | IS30 | Cupriavidus necator | 62 | 2e-09 | |
| ISPfl2 | IS30 | - | Pseudomonas fluorescens | 62 | 2e-09 |
| ISPpu17 | IS30 | Pseudomonas putida | 60 | 9e-09 | |
| ISGau8 | IS30 | Gemmatimonas aurantiaca | 58 | 4e-08 | |
| ISUnCu4 | IS30 | Plasmid QKH54 | 58 | 4e-08 | |
| ISMsm8 | IS30 | Mycobacterium smegmatis | 56 | 1e-07 | |
| ISPst10 | IS30 | Pseudomonas stutzeri | 54 | 6e-07 | |
| ISAcl1 | IS30 | Arthrobacter chlorophenolicus | 52 | 2e-06 | |
| ISMtsp4 | IS30 | Methylobacterium sp. | 50 | 9e-06 | |
| IS1112a | IS30 | - | Xanthomonas oryzae | 50 | 9e-06 |
| IS1112b | IS30 | - | Xanthomonas oryzae | 48 | 4e-05 |
| IS1112 | IS30 | - | Xanthomonas oryzae | 48 | 4e-05 |
| ISCARN114 | IS30 | Metagenomic data from CARNOULES | 46 | 1e-04 | |
| IS1513 | IS30 | - | Corynebacterium striatum | 46 | 1e-04 |
| IST3091 | IS30 | - | Thiobacillus ferrooxidans | 44 | 6e-04 |
| ISMsm6 | IS1634 | Mycobacterium smegmatis | 42 | 0.002 | |
| ISBlo7 | IS30 | Bifidobacterium longum | 42 | 0.002 | |
| ISPa59 | IS30 | Pseudomonas aeruginosa | 36 | 0.14 | |
| ISPa37 | IS30 | Pseudomonas aeruginosa | 36 | 0.14 | |
| ISSer1 | IS110 | Saccharopolyspora erythraea | 36 | 0.14 | |
| ISHarch17 | IS200/IS605 | IS1341 | Halophilic archaeon | 34 | 0.54 |
| ISHaru3 | IS200/IS605 | IS1341 | Halobellus rufus | 34 | 0.54 |
| ISMno13 | IS66 | Methylobacterium nodulans | 34 | 0.54 | |
| ISRme10 | IS30 | Ralstonia metallidurans | 34 | 0.54 | |
| ISMsm5 | IS630 | Mycobacterium smegmatis | 34 | 0.54 | |
| ISPa42 | Tn3 | Pseudomonas aeruginosa | 34 | 0.54 | |
| ISCg2 | IS30 | - | Corynebacterium glutamicum | 34 | 0.54 |
| ISHmu7 | IS200/IS605 | IS1341 | Halomicrobium mukohataei | 32 | 2.1 |
| ISAod1 | IS256 | IS1249 | Actinomyces odontolyticus | 32 | 2.1 |
| ISSmi1 | IS30 | Streptococcus mitis | 32 | 2.1 | |
| ISCysp19 | IS5 | ISL2 | Cyanothece sp. | 32 | 2.1 |
| ISMtsp5 | IS3 | IS2 | Methylobacterium sp. | 32 | 2.1 |
| ISMno23 | IS91 | Methylobacterium nodulans | 32 | 2.1 | |
| ISRjo1 | IS1380 | Rhodococcus jostii | 32 | 2.1 | |
| ISAar16 | IS110 | Arthrobacter arilaitensis | 32 | 2.1 | |
| ISMex3 | IS256 | Methylobacterium extorquens | 32 | 2.1 | |
| ISDds1 | IS3 | IS3 | Deinococcus deserti | 32 | 2.1 |
| ISPen2 | IS3 | IS51 | Pseudomonas entomophila | 32 | 2.1 |
| ISPpu22 | IS3 | IS51 | Pseudomonas putida | 32 | 2.1 |
| IS219 | IS1380 | - | Mycobacterium fortuitum | 32 | 2.1 |
| IS1471 | IS630 | - | Burkholderia cepacia | 32 | 2.1 |
| ISMaq7 | IS256 | Marinobacter aquaeolei | 30 | 8.4 | |
| ISAhy3 | IS30 | Aeromonas hydrophila | 30 | 8.4 | |
| ISXci1 | IS21 | Xanthomonas citri | 30 | 8.4 | |
| ISHla15 | IS200/IS605 | Halorubrum lacusprofundi | 30 | 8.4 | |
| ISSfr3 | ISKra4 | ISAzba1 | Sinorhizobium fredii | 30 | 8.4 |
| ISActu1 | IS256 | Actinomyces turicensis | 30 | 8.4 | |
| ISPa41 | IS5 | IS5 | Pseudomonas aeruginosa | 30 | 8.4 |
| ISPna5 | IS5 | IS903 | Polaromonas naphthalenivorans | 30 | 8.4 |
| ISStsp8 | IS5 | ISL2 | Streptomyces sp. | 30 | 8.4 |
| ISStsp7 | IS5 | ISL2 | Streptomyces sp | 30 | 8.4 |
| ISAnsp14 | IS256 | Anaeromyxobacter sp. | 30 | 8.4 | |
| ISVsp9 | IS1182 | Verrucomicrobium spinosum | 30 | 8.4 | |
| ISApr12 | IS5 | Alpha proteobacterium | 30 | 8.4 | |
| ISMno8 | IS1182 | Methylobacterium nodulans | 30 | 8.4 | |
| ISAcma50 | IS21 | Acaryochloris marina | 30 | 8.4 | |
| ISAcma38 | IS21 | Acaryochloris marina | 30 | 8.4 | |
| ISMsm10 | IS1380 | Mycobacterium smegmatis | 30 | 8.4 | |
| ISMex38 | Tn3 | Methylobacterium extorquens | 30 | 8.4 | |
| ISMex14 | IS256 | Methylobacterium extorquens | 30 | 8.4 | |
| ISAnsp5 | IS21 | Anaeromyxobacter sp. | 30 | 8.4 | |
| ISStma11 | ISL3 | Stenotrophomonas maltophilia | 30 | 8.4 | |
| ISMex8 | IS21 | Methylobacterium extorquens | 30 | 8.4 | |
| ISAzo28 | IS110 | Azoarcus sp. | 30 | 8.4 | |
| ISThsp9 | Tn3 | Thiomonas sp. | 30 | 8.4 | |
| ISSen2 | IS5 | IS427 | Salmonella enterica | 30 | 8.4 |
| ISCARN26 | IS110 | Metagenomic data from CARNOULES | 30 | 8.4 | |
| ISThsp1 | IS1182 | Thiomonas sp. | 30 | 8.4 | |
| ISAli10 | IS66 | Azospirillum lipoferum | 30 | 8.4 | |
| ISDds9 | IS5 | IS427 | Deinococcus deserti | 30 | 8.4 |
| ISRssp2 | IS1595 | ISNha5 | Roseovarius sp. | 30 | 8.4 |
| ISSba6 | IS4 | IS4 | Shewanella baltica | 30 | 8.4 |
| ISLxx6 | IS5 | IS427 | Leifsonia xyli | 30 | 8.4 |
| ISSsp5 | IS21 | Sphingomonas sp. | 30 | 8.4 | |
| ISBlma8 | ISAs1 | Blastopirellula marina | 30 | 8.4 | |
| ISApr4 | IS1595 | ISNwi1 | Alpha proteobacterium | 30 | 8.4 |
| ISNmo3 | IS481 | Nitrococcus mobilis | 30 | 8.4 | |
| ISSisp1 | IS3 | IS407 | Silicibacter sp. | 30 | 8.4 |
| ISBcen21 | IS3 | IS51 | Burkholderia cenocepacia | 30 | 8.4 |
| ISRba2 | IS4 | IS50 | Rhodopirellula baltica | 30 | 8.4 |
| ISSod7 | IS4 | IS4 | Shewanella oneidensis | 30 | 8.4 |
| ISRsp1 | IS66 | - | Rhizobium sp. | 30 | 8.4 |
| ISRso19 | IS21 | - | Ralstonia solanacearum | 30 | 8.4 |
| ISBfu1 | IS481 | - | Brevibacterium fuscum | 30 | 8.4 |
| IS1632 | IS256 | - | Bradyrhizobium japonicum | 30 | 8.4 |
| IS1295 | IS256 | - | Rhodococcus sp. | 30 | 8.4 |
>ISBlo4
Length = 1399
Score = 141 bits (71), Expect = 3e-33
Identities = 89/95 (93%)
Strand = Plus / Plus
Query: 1360 gtctacttctgcgacccggcctccccgtggcagcgcggcagcaacgagaacaccaacggg 1419
|||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct: 1108 gtctacttctgcgacccgcactccccgtggcagcgcggcaccaacgagaacaccaacggg 1167
Query: 1420 ctgcttcgccagtacttccccaagggcaccgacct 1454
|| || ||||||||||||||||| |||||||||||
Sbjct: 1168 ctcctgcgccagtacttccccaaaggcaccgacct 1202
Score = 79.8 bits (40), Expect = 1e-14
Identities = 123/148 (83%), Gaps = 2/148 (1%)
Strand = Plus / Plus
Query: 1094 tcgaggaccgcgccgtacccgggcactgggagggcgacctgatcaccggggagctg-aac 1152
|||||||||| || || || || |||||||||||||| || |||||||| ||| | |||
Sbjct: 842 tcgaggaccgggcggtcccgggccactgggagggcgatctcatcaccggc-agccgcaac 900
Query: 1153 aagtccgcgatcggcaccctggtcgagcgcaccacccggtacaccatgctgctgcaccta 1212
|| |||||||||||| || ||||||||||||||| ||| ||| || |||||||||||
Sbjct: 901 aaaagcgcgatcggcacgctcgtcgagcgcaccaccaggttcacgatcctgctgcacctg 960
Query: 1213 ccggccgggcacaccgccgaacacgtcc 1240
|| | ||||||| ||||||||||||||
Sbjct: 961 cccgacgggcacgacgccgaacacgtcc 988
Score = 52.0 bits (26), Expect = 2e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 924 cgagaccatctaccaggccctctacctgcaggcc 957
|||||| |||||||||||| ||||||||||||||
Sbjct: 675 cgagacgatctaccaggccatctacctgcaggcc 708
Score = 34.2 bits (17), Expect = 0.54
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 1294 ctgacctgggaccaggg 1310
|||||||||||||||||
Sbjct: 1042 ctgacctgggaccaggg 1058
>ISLxc3
Length = 1511
Score = 121 bits (61), Expect = 3e-27
Identities = 139/165 (84%)
Strand = Plus / Plus
Query: 1290 gtcgctgacctgggaccagggcagcgagatggccgcgcacaagcagatcaccttggccac 1349
||||||||||||||||||||| ||||||||||| |||||| | |||| | |||||
Sbjct: 1197 gtcgctgacctgggaccagggtgcggagatggccgcccacaagacgttcacgatcgccac 1256
Query: 1350 cgacatgcaggtctacttctgcgacccggcctccccgtggcagcgcggcagcaacgagaa 1409
||||||| | ||||||||||||||||| ||||| || ||||||||||| ||||||||
Sbjct: 1257 cgacatggacgtctacttctgcgacccagcctcgccctggcagcgcggttctaacgagaa 1316
Query: 1410 caccaacgggctgcttcgccagtacttccccaagggcaccgacct 1454
||| |||||| |||| | ||||||||||| ||||||||||||||
Sbjct: 1317 cacgaacgggttgctgaggcagtacttcccgaagggcaccgacct 1361
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 1158 cgcgatcggcaccctggtcgagcgcaccacc 1188
||||||||||||||| |||||||| ||||||
Sbjct: 1065 cgcgatcggcaccctcgtcgagcgaaccacc 1095
>ISLxx5
Length = 1495
Score = 105 bits (53), Expect = 2e-22
Identities = 89/101 (88%)
Strand = Plus / Plus
Query: 1345 gccaccgacatgcaggtctacttctgcgacccggcctccccgtggcagcgcggcagcaac 1404
||||||||||| | |||||||||||||||||| || || ||||| ||||||||||||
Sbjct: 1233 gccaccgacatcccggtctacttctgcgaccccgcgagtccctggcaacgcggcagcaac 1292
Query: 1405 gagaacaccaacgggctgcttcgccagtacttccccaaggg 1445
|||||||||||||| || |||||||| ||||||||||||||
Sbjct: 1293 gagaacaccaacggactccttcgccaatacttccccaaggg 1333
Score = 58.0 bits (29), Expect = 4e-08
Identities = 65/77 (84%)
Strand = Plus / Plus
Query: 1062 gatggtgatgatcgccgagcggccggccgaggtcgaggaccgcgccgtacccgggcactg 1121
|||||| |||||| |||| || || ||||| |||||||||||||||| ||||| || ||
Sbjct: 950 gatggtaatgatctccgaccgtcccgccgaaatcgaggaccgcgccgttcccggacattg 1009
Query: 1122 ggagggcgacctgatca 1138
||| |||||||| ||||
Sbjct: 1010 ggaaggcgacctcatca 1026
Score = 30.2 bits (15), Expect = 8.4
Identities = 33/39 (84%)
Strand = Plus / Plus
Query: 1513 cgcaagaccctcggctgggccacacccgccgaacgcctc 1551
||||| || |||||||||| || || ||||||||||||
Sbjct: 1407 cgcaaaacgctcggctgggaaaccccagccgaacgcctc 1445
>ISPsp8
Length = 1113
Score = 101 bits (51), Expect = 3e-21
Identities = 84/95 (88%)
Strand = Plus / Plus
Query: 1361 tctacttctgcgacccggcctccccgtggcagcgcggcagcaacgagaacaccaacgggc 1420
||||||||||||||||| | ||| |||||||||||||||||||| |||| |||||| |
Sbjct: 834 tctacttctgcgacccgcacagcccctggcagcgcggcagcaacgaaaacatcaacggcc 893
Query: 1421 tgcttcgccagtacttccccaagggcaccgacctg 1455
|| ||||||||||||| ||||||||||| ||||||
Sbjct: 894 tgattcgccagtacttgcccaagggcacagacctg 928
>ISPsp7
Length = 1113
Score = 101 bits (51), Expect = 3e-21
Identities = 84/95 (88%)
Strand = Plus / Plus
Query: 1361 tctacttctgcgacccggcctccccgtggcagcgcggcagcaacgagaacaccaacgggc 1420
||||||||||||||||| | ||| |||||||||||||||||||| |||| |||||| |
Sbjct: 834 tctacttctgcgacccgcacagcccctggcagcgcggcagcaacgaaaacatcaacggcc 893
Query: 1421 tgcttcgccagtacttccccaagggcaccgacctg 1455
|| ||||||||||||| ||||||||||| ||||||
Sbjct: 894 tgattcgccagtacttgcccaagggcacagacctg 928
>ISPfr9
Length = 1484
Score = 99.6 bits (50), Expect = 1e-20
Identities = 56/58 (96%)
Strand = Plus / Plus
Query: 1398 cagcaacgagaacaccaacgggctgcttcgccagtacttccccaagggcaccgacctg 1455
||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct: 1279 cagcaacgagaacaccaacgggctgctgcgtcagtacttccccaagggcaccgacctg 1336
Score = 42.1 bits (21), Expect = 0.002
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1510 ccccgcaagaccctcggctgg 1530
|||||||||||||||||||||
Sbjct: 1391 ccccgcaagaccctcggctgg 1411
Score = 40.1 bits (20), Expect = 0.009
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 1111 cccgggcactgggagggcgacctgatca 1138
||||| |||||||| |||||||||||||
Sbjct: 944 cccggccactgggaaggcgacctgatca 971
Score = 38.2 bits (19), Expect = 0.034
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 1156 tccgcgatcggcaccctggtcga 1178
||||||||||||||| |||||||
Sbjct: 986 tccgcgatcggcaccttggtcga 1008
>ISCmi3
Length = 1459
Score = 97.6 bits (49), Expect = 4e-20
Identities = 82/93 (88%)
Strand = Plus / Plus
Query: 1359 ggtctacttctgcgacccggcctccccgtggcagcgcggcagcaacgagaacaccaacgg 1418
|||||| |||||||| ||| ||| || ||||| ||||||||||||||||||||||||||
Sbjct: 1208 ggtctatttctgcgatccgcactcaccctggcaacgcggcagcaacgagaacaccaacgg 1267
Query: 1419 gctgcttcgccagtacttccccaagggcaccga 1451
|| || |||||||||||||| |||||||||||
Sbjct: 1268 actcctgcgccagtacttccctaagggcaccga 1300
Score = 56.0 bits (28), Expect = 1e-07
Identities = 103/128 (80%)
Strand = Plus / Plus
Query: 894 cccgggcgacgagactatgcgggtgtcccacgagaccatctaccaggccctctacctgca 953
||||||||| |||| |||||||||| | ||||| |||||||| || ||||| | ||
Sbjct: 743 cccgggcgaggagagtatgcgggtgagcacggagacgatctaccaagcgatctacgtcca 802
Query: 954 ggcccgcggcggcctcagacgcgaggtcgcccaggcgctacgcaccggccgggcccggcg 1013
|||||||||||| || | ||||| |||||| | ||| ||||||||||||| |||| ||
Sbjct: 803 ggcccgcggcggactgcgccgcgaagtcgccgacgcgttacgcaccggccgcacccgccg 862
Query: 1014 caaacccc 1021
|| |||||
Sbjct: 863 cagacccc 870
Score = 42.1 bits (21), Expect = 0.002
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 1154 agtccgcgatcggcaccctggtcgagcgcaccacccg 1190
|||||||||||| || |||||||| |||||||||||
Sbjct: 1003 agtccgcgatcgtgactctggtcgaacgcaccacccg 1039
Score = 38.2 bits (19), Expect = 0.034
Identities = 43/51 (84%)
Strand = Plus / Plus
Query: 1261 atcaccaccttgcccgcgcacctgcgcgggtcgctgacctgggaccagggc 1311
|||| |||| |||| || ||||| || || ||| |||||||||||||||||
Sbjct: 1110 atcagcaccctgcctgcacacctacgtggatcgttgacctgggaccagggc 1160
>ISPfr16
Length = 1234
Score = 89.7 bits (45), Expect = 1e-17
Identities = 87/101 (86%)
Strand = Plus / Plus
Query: 1361 tctacttctgcgacccggcctccccgtggcagcgcggcagcaacgagaacaccaacgggc 1420
||||||||||||| || ||| || |||||||| || |||||||||||||||||||| |
Sbjct: 1010 tctacttctgcgatccccactcgccctggcagcgggggagcaacgagaacaccaacggcc 1069
Query: 1421 tgcttcgccagtacttccccaagggcaccgacctgaccgtc 1461
|||| ||||||||| | ||||| ||||||||||||| ||||
Sbjct: 1070 tgctgcgccagtacctacccaaaggcaccgacctgagcgtc 1110
Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 696 cgtcagccgtgaggtg 711
||||||||||||||||
Sbjct: 354 cgtcagccgtgaggtg 369
Score = 30.2 bits (15), Expect = 8.4
Identities = 21/23 (91%)
Strand = Plus / Plus
Query: 1498 ctcaacggccgaccccgcaagac 1520
|||||||| || |||||||||||
Sbjct: 1147 ctcaacggacgcccccgcaagac 1169
>ISMdi25
Length = 1601
Score = 87.7 bits (44), Expect = 4e-17
Identities = 86/100 (86%)
Strand = Plus / Plus
Query: 1355 tgcaggtctacttctgcgacccggcctccccgtggcagcgcggcagcaacgagaacacca 1414
||||||||||||||||||| || ||| || |||||||| || | |||||||||||||
Sbjct: 1092 tgcaggtctacttctgcgatccacgctcgccctggcagcggggtacgaacgagaacacca 1151
Query: 1415 acgggctgcttcgccagtacttccccaagggcaccgacct 1454
|||| ||||| |||||||||||||| ||||| ||||||||
Sbjct: 1152 acggtctgctgcgccagtacttcccaaaggggaccgacct 1191
Score = 52.0 bits (26), Expect = 2e-06
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 1159 gcgatcggcaccctggtcgagcgcaccacccggtacaccatgctgctgca 1208
|||||||| || |||||||||||||| || |||| ||| |||||||||||
Sbjct: 845 gcgatcggtacgctggtcgagcgcacgacgcggttcacgatgctgctgca 894
Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 1295 tgacctgggaccaggg 1310
||||||||||||||||
Sbjct: 1032 tgacctgggaccaggg 1047
>IS1086
Length = 1106
Score = 85.7 bits (43), Expect = 2e-16
Identities = 85/99 (85%)
Strand = Plus / Plus
Query: 1363 tacttctgcgacccggcctccccgtggcagcgcggcagcaacgagaacaccaacgggctg 1422
||||||||||||||| | ||| ||||||||||||| | ||||||||||| || |||
Sbjct: 839 tacttctgcgacccgcacagcccctggcagcgcggcacctgtgagaacaccaatggtctg 898
Query: 1423 cttcgccagtacttccccaagggcaccgacctgaccgtc 1461
|| ||||||||||| |||||||||||||||||| |||||
Sbjct: 899 ctgcgccagtacttacccaagggcaccgacctgtccgtc 937
Score = 48.1 bits (24), Expect = 4e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 1111 cccgggcactgggagggcgacctgatca 1138
||||||||||||||||||||||| ||||
Sbjct: 590 cccgggcactgggagggcgacctcatca 617
Score = 42.1 bits (21), Expect = 0.002
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 916 gtgtcccacgagaccatctac 936
|||||||||||||||||||||
Sbjct: 398 gtgtcccacgagaccatctac 418
>IS1394
Length = 1100
Score = 79.8 bits (40), Expect = 1e-14
Identities = 76/88 (86%)
Strand = Plus / Plus
Query: 1361 tctacttctgcgacccggcctccccgtggcagcgcggcagcaacgagaacaccaacgggc 1420
|||||||||||||||| | ||| ||||||||||||||||||||||||| |||||| |
Sbjct: 833 tctacttctgcgacccacacagcccctggcagcgcggcagcaacgagaacatcaacggcc 892
Query: 1421 tgcttcgccagtacttccccaagggcac 1448
|| | ||||||||| | |||||||||||
Sbjct: 893 tgatccgccagtacctgcccaagggcac 920
Score = 40.1 bits (20), Expect = 0.009
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 1111 cccgggcactgggagggcgacctgatca 1138
||||| |||||||||||||| |||||||
Sbjct: 586 cccggtcactgggagggcgatctgatca 613
Score = 40.1 bits (20), Expect = 0.009
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1167 caccctggtcgagcgcacca 1186
||||||||||||||||||||
Sbjct: 642 caccctggtcgagcgcacca 661
>ISPfr14
Length = 1490
Score = 75.8 bits (38), Expect = 2e-13
Identities = 50/54 (92%)
Strand = Plus / Plus
Query: 1402 aacgagaacaccaacgggctgcttcgccagtacttccccaagggcaccgacctg 1455
||||||||||||||||| |||| ||||||||||||||||||||||| ||||||
Sbjct: 1289 aacgagaacaccaacggtgtgctgcgccagtacttccccaagggcactgacctg 1342
Score = 36.2 bits (18), Expect = 0.14
Identities = 24/26 (92%)
Strand = Plus / Plus
Query: 1156 tccgcgatcggcaccctggtcgagcg 1181
|||||||||||||| || ||||||||
Sbjct: 992 tccgcgatcggcacgctcgtcgagcg 1017
Score = 32.2 bits (16), Expect = 2.1
Identities = 34/40 (85%)
Strand = Plus / Plus
Query: 1099 gaccgcgccgtacccgggcactgggagggcgacctgatca 1138
||||| ||||| || || || |||||||||||||| ||||
Sbjct: 938 gaccgtgccgtgccaggccattgggagggcgacctcatca 977
>ISPst1
Length = 1113
Score = 69.9 bits (35), Expect = 1e-11
Identities = 77/91 (84%)
Strand = Plus / Plus
Query: 1365 cttctgcgacccggcctccccgtggcagcgcggcagcaacgagaacaccaacgggctgct 1424
||||||||||||| | ||| |||||||||||||||||||| |||| ||| || ||| |
Sbjct: 838 cttctgcgacccgcacagcccttggcagcgcggcagcaacgaaaacatcaatggtctgat 897
Query: 1425 tcgccagtacttccccaagggcaccgacctg 1455
||||||||||| |||||||| || ||||||
Sbjct: 898 ccgccagtacttgcccaagggtacagacctg 928
Score = 34.2 bits (17), Expect = 0.54
Identities = 23/25 (92%)
Strand = Plus / Plus
Query: 1114 gggcactgggagggcgacctgatca 1138
||||| ||||| |||||||||||||
Sbjct: 590 gggcattgggaaggcgacctgatca 614
>IS1382
Length = 1093
Score = 69.9 bits (35), Expect = 1e-11
Identities = 50/55 (90%)
Strand = Plus / Minus
Query: 1396 ggcagcaacgagaacaccaacgggctgcttcgccagtacttccccaagggcaccg 1450
||||||||||||||||| ||||| ||||| || |||||||| |||||||||||||
Sbjct: 234 ggcagcaacgagaacacgaacggcctgctccggcagtacttacccaagggcaccg 180
Score = 34.2 bits (17), Expect = 0.54
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 1303 gaccagggcagcgagatggcc 1323
||||| |||||||||||||||
Sbjct: 327 gaccaaggcagcgagatggcc 307
>ISShes10
Length = 1113
Score = 63.9 bits (32), Expect = 6e-10
Identities = 74/88 (84%)
Strand = Plus / Plus
Query: 1361 tctacttctgcgacccggcctccccgtggcagcgcggcagcaacgagaacaccaacgggc 1420
||||||||||||||||| | ||| ||||| ||||||||||| ||||||| ||| || |
Sbjct: 834 tctacttctgcgacccgcacagcccctggcaacgcggcagcaatgagaacatcaatggac 893
Query: 1421 tgcttcgccagtacttccccaagggcac 1448
|| | ||||||||| | |||||||||||
Sbjct: 894 tgatccgccagtacctgcccaagggcac 921
Score = 38.2 bits (19), Expect = 0.034
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1120 tgggagggcgacctgatca 1138
|||||||||||||||||||
Sbjct: 596 tgggagggcgacctgatca 614
>ISLxc4
Length = 1311
Score = 63.9 bits (32), Expect = 6e-10
Identities = 47/52 (90%)
Strand = Plus / Plus
Query: 1361 tctacttctgcgacccggcctccccgtggcagcgcggcagcaacgagaacac 1412
|||||| |||||||||| ||| || ||||||||||||||||||||||||||
Sbjct: 1060 tctactcctgcgacccgcactcgccctggcagcgcggcagcaacgagaacac 1111
Score = 40.1 bits (20), Expect = 0.009
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 1495 gaactcaacggccgaccccgcaagaccctcggctgg 1530
||||||||| |||||||||||| | ||||||||||
Sbjct: 1194 gaactcaacaaccgaccccgcaaaatcctcggctgg 1229
Score = 30.2 bits (15), Expect = 8.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 1297 acctgggaccagggc 1311
|||||||||||||||
Sbjct: 996 acctgggaccagggc 1010
>ISPsp4
Length = 1084
Score = 63.9 bits (32), Expect = 6e-10
Identities = 74/88 (84%)
Strand = Plus / Plus
Query: 1361 tctacttctgcgacccggcctccccgtggcagcgcggcagcaacgagaacaccaacgggc 1420
||||||||||||||||| | ||| |||||||||||||||||||| |||| || || |
Sbjct: 819 tctacttctgcgacccgcacagcccttggcagcgcggcagcaacgaaaacattaatggcc 878
Query: 1421 tgcttcgccagtacttccccaagggcac 1448
|| | ||||||||| | |||||||||||
Sbjct: 879 tgatccgccagtacctgcccaagggcac 906
>IS1088
Length = 1103
Score = 61.9 bits (31), Expect = 2e-09
Identities = 43/47 (91%)
Strand = Plus / Plus
Query: 1399 agcaacgagaacaccaacgggctgcttcgccagtacttccccaaggg 1445
||||||||||||||||| ||||| | ||||||||||||||||||||
Sbjct: 873 agcaacgagaacaccaatgggctcttgcgccagtacttccccaaggg 919
Score = 48.1 bits (24), Expect = 4e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 1159 gcgatcggcaccctggtcgagcgcaccacccg 1190
||||| ||||| ||||||||||||||||||||
Sbjct: 627 gcgattggcacgctggtcgagcgcaccacccg 658
Score = 40.1 bits (20), Expect = 0.009
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 1294 ctgacctgggaccagggcagcgagatggccgcgcac 1329
||||||| |||| ||||||||||||||||| ||||
Sbjct: 768 ctgacctacgaccggggcagcgagatggccgagcac 803
Score = 32.2 bits (16), Expect = 2.1
Identities = 25/28 (89%)
Strand = Plus / Plus
Query: 1111 cccgggcactgggagggcgacctgatca 1138
||||| ||||||||||| || |||||||
Sbjct: 579 cccggccactgggagggtgatctgatca 606
>ISPfl2
Length = 1081
Score = 61.9 bits (31), Expect = 2e-09
Identities = 79/95 (83%)
Strand = Plus / Plus
Query: 1361 tctacttctgcgacccggcctccccgtggcagcgcggcagcaacgagaacaccaacgggc 1420
||||||||||||||||| | || |||||||||||||||||||| |||| ||| ||
Sbjct: 802 tctacttctgcgacccgcacagtccttggcagcgcggcagcaacgaaaacatcaatggct 861
Query: 1421 tgcttcgccagtacttccccaagggcaccgacctg 1455
|| | ||||||||| | ||||||||||| ||||||
Sbjct: 862 tgatccgccagtacctgcccaagggcacagacctg 896
Score = 30.2 bits (15), Expect = 8.4
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 1120 tgggagggcgacctgatca 1138
||||| |||||||||||||
Sbjct: 564 tgggaaggcgacctgatca 582
>ISPpu17
Length = 1066
Score = 60.0 bits (30), Expect = 9e-09
Identities = 57/66 (86%)
Strand = Plus / Plus
Query: 1387 tggcagcgcggcagcaacgagaacaccaacgggctgcttcgccagtacttccccaagggc 1446
||||| || |||| ||| || ||||||||||| ||||| |||||||| ||||||||||||
Sbjct: 865 tggcaacgtggcaccaatgaaaacaccaacggtctgctccgccagtatttccccaagggc 924
Query: 1447 accgac 1452
| ||||
Sbjct: 925 agcgac 930
>ISGau8
Length = 1364
Score = 58.0 bits (29), Expect = 4e-08
Identities = 56/65 (86%)
Strand = Plus / Plus
Query: 1079 agcggccggccgaggtcgaggaccgcgccgtacccgggcactgggagggcgacctgatca 1138
|||||||| ||||||||| || |||||||| || || |||||||||||||| ||||||
Sbjct: 786 agcggccgcccgaggtcgccgatcgcgccgtgccgggccactgggagggcgatctgatcg 845
Query: 1139 ccggg 1143
|||||
Sbjct: 846 ccggg 850
Score = 56.0 bits (28), Expect = 1e-07
Identities = 76/92 (82%)
Strand = Plus / Plus
Query: 1355 tgcaggtctacttctgcgacccggcctccccgtggcagcgcggcagcaacgagaacacca 1414
||||||||||||||||||||||| ||| |||||||| || ||||||||||| |
Sbjct: 1056 tgcaggtctacttctgcgacccgcagagcccctggcagcgggggtcgaacgagaacacga 1115
Query: 1415 acgggctgcttcgccagtacttccccaagggc 1446
|||| ||||| || ||||||||||| ||||||
Sbjct: 1116 acggcctgctgcggcagtacttcccgaagggc 1147
Score = 36.2 bits (18), Expect = 0.14
Identities = 24/26 (92%)
Strand = Plus / Plus
Query: 1162 atcggcaccctggtcgagcgcaccac 1187
|||| ||| |||||||||||||||||
Sbjct: 866 atcgccacgctggtcgagcgcaccac 891
Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 1291 tcgctgacctgggacc 1306
||||||||||||||||
Sbjct: 992 tcgctgacctgggacc 1007
>ISUnCu4
Length = 1113
Score = 58.0 bits (29), Expect = 4e-08
Identities = 77/93 (82%)
Strand = Plus / Plus
Query: 1363 tacttctgcgacccggcctccccgtggcagcgcggcagcaacgagaacaccaacgggctg 1422
||||||||||||||| | ||| ||||||||||| |||||||| |||| ||| || |||
Sbjct: 836 tacttctgcgacccgcacagcccttggcagcgcggtagcaacgaaaacatcaatggcctg 895
Query: 1423 cttcgccagtacttccccaagggcaccgacctg 1455
| ||||||||| | ||||| ||||| ||||||
Sbjct: 896 atccgccagtacctgcccaaaggcacagacctg 928
>ISMsm8
Length = 1457
Score = 56.0 bits (28), Expect = 1e-07
Identities = 46/52 (88%)
Strand = Plus / Plus
Query: 1261 atcaccaccttgcccgcgcacctgcgcgggtcgctgacctgggaccagggca 1312
|||||||| ||||||||||| ||||| ||||| |||||||||||| |||||
Sbjct: 1108 atcaccacgttgcccgcgcaactgcgtcggtcgttgacctgggaccggggca 1159
Score = 52.0 bits (26), Expect = 2e-06
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 1162 atcggcaccctggtcgagcgcaccacccggtacaccatgctg 1203
|||||||| ||||||||||||| || ||||| ||||||||||
Sbjct: 958 atcggcacgctggtcgagcgcagcagccggttcaccatgctg 999
Score = 46.1 bits (23), Expect = 1e-04
Identities = 59/71 (83%)
Strand = Plus / Plus
Query: 1384 ccgtggcagcgcggcagcaacgagaacaccaacgggctgcttcgccagtacttccccaag 1443
|||||||||||||| | ||| ||||||||||| || ||| | ||||| ||||| || ||
Sbjct: 1231 ccgtggcagcgcggtaccaatgagaacaccaatggcctgttacgccaatactttccaaaa 1290
Query: 1444 ggcaccgacct 1454
|| ||||||||
Sbjct: 1291 gggaccgacct 1301
>ISPst10
Length = 1113
Score = 54.0 bits (27), Expect = 6e-07
Identities = 78/95 (82%)
Strand = Plus / Plus
Query: 1361 tctacttctgcgacccggcctccccgtggcagcgcggcagcaacgagaacaccaacgggc 1420
|||||||||||||||| | ||| ||||| ||||| ||||||||||||| ||| || |
Sbjct: 834 tctacttctgcgaccctcacagcccttggcaacgcggtagcaacgagaacatcaatggcc 893
Query: 1421 tgcttcgccagtacttccccaagggcaccgacctg 1455
|| | ||||||||| | ||||| ||||| ||||||
Sbjct: 894 tgatccgccagtacctgcccaaaggcacagacctg 928
Score = 30.2 bits (15), Expect = 8.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 521 ccctcgccgatccac 535
|||||||||||||||
Sbjct: 526 ccctcgccgatccac 512
>ISAcl1
Length = 1341
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 1186 acccggtacaccatgctgctgcacct 1211
||||||||||||||||||||||||||
Sbjct: 888 acccggtacaccatgctgctgcacct 913
Score = 44.1 bits (22), Expect = 6e-04
Identities = 46/54 (85%)
Strand = Plus / Plus
Query: 1084 ccggccgaggtcgaggaccgcgccgtacccgggcactgggagggcgacctgatc 1137
|||||||| | || |||||| ||||||||||| |||||||| ||||| |||||
Sbjct: 783 ccggccgaagccgcggaccgggccgtacccggacactgggaatgcgacttgatc 836
Score = 42.1 bits (21), Expect = 0.002
Identities = 48/57 (84%)
Strand = Plus / Plus
Query: 1360 gtctacttctgcgacccggcctccccgtggcagcgcggcagcaacgagaacaccaac 1416
||||| ||||||||||| ||| || ||||| || |||| ||||||||||||||||
Sbjct: 1062 gtctatttctgcgacccccactcgccctggcaacgaggcaccaacgagaacaccaac 1118
Score = 36.2 bits (18), Expect = 0.14
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 921 ccacgagaccatctaccaggcc 942
||||||||| ||||||||||||
Sbjct: 620 ccacgagacgatctaccaggcc 641
>ISMtsp4
Length = 1455
Score = 50.1 bits (25), Expect = 9e-06
Identities = 52/61 (85%)
Strand = Plus / Plus
Query: 1077 cgagcggccggccgaggtcgaggaccgcgccgtacccgggcactgggagggcgacctgat 1136
|||||| ||| ||||||| ||||||||||| || || ||||||||||| || || |||||
Sbjct: 878 cgagcgtccgcccgaggtggaggaccgcgcggtgccggggcactgggaaggagatctgat 937
Query: 1137 c 1137
|
Sbjct: 938 c 938
Score = 50.1 bits (25), Expect = 9e-06
Identities = 52/61 (85%)
Strand = Plus / Plus
Query: 1269 cttgcccgcgcacctgcgcgggtcgctgacctgggaccagggcagcgagatggccgcgca 1328
|||||||| ||| ||||| | ||| |||||||||||||||| | ||||||||||| |||
Sbjct: 1118 cttgcccgagcagctgcggcgctcgttgacctgggaccagggtaccgagatggccgagca 1177
Query: 1329 c 1329
|
Sbjct: 1178 c 1178
Score = 42.1 bits (21), Expect = 0.002
Identities = 69/85 (81%)
Strand = Plus / Plus
Query: 1355 tgcaggtctacttctgcgacccggcctccccgtggcagcgcggcagcaacgagaacacca 1414
||||||||||||||||||| || ||| || |||||||| || | |||||||| || |
Sbjct: 1204 tgcaggtctacttctgcgatccacgctcaccctggcagcgggggacgaacgagaatacga 1263
Query: 1415 acgggctgcttcgccagtacttccc 1439
||||| | || || |||||||||||
Sbjct: 1264 acgggttactgcgacagtacttccc 1288
Score = 30.2 bits (15), Expect = 8.4
Identities = 21/23 (91%)
Strand = Plus / Plus
Query: 815 cgctgcggcagtacgtgcaggag 837
|||||||| |||||||||||||
Sbjct: 520 cgctgcggacgtacgtgcaggag 542
>IS1112a
Length = 1055
Score = 50.1 bits (25), Expect = 9e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 1387 tggcagcgcggcagcaacgagaacaccaacggg 1419
||||||||||||||||||||||| ||||||||
Sbjct: 845 tggcagcgcggcagcaacgagaatgccaacggg 877
>IS1112b
Length = 1055
Score = 48.1 bits (24), Expect = 4e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 1387 tggcagcgcggcagcaacgagaacaccaacgg 1418
||||||||||||||||||||||| |||||||
Sbjct: 845 tggcagcgcggcagcaacgagaatgccaacgg 876
>IS1112
Length = 1055
Score = 48.1 bits (24), Expect = 4e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 1387 tggcagcgcggcagcaacgagaacaccaacgg 1418
||||||||||||||||||||||| |||||||
Sbjct: 845 tggcagcgcggcagcaacgagaatgccaacgg 876
>ISCARN114
Length = 1063
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 1108 gtacccgggcactgggagggcgacctgatca 1138
|||||||| |||||||| |||||||||||||
Sbjct: 575 gtacccggtcactgggaaggcgacctgatca 605
Score = 32.2 bits (16), Expect = 2.1
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 1429 cagtacttccccaagggcac 1448
||||| ||||||||||||||
Sbjct: 893 cagtatttccccaagggcac 912
>IS1513
Length = 1705
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1111 cccgggcactgggagggcgacct 1133
|||||||||||||||||||||||
Sbjct: 1229 cccgggcactgggagggcgacct 1251
Score = 36.2 bits (18), Expect = 0.14
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 1401 caacgagaacaccaacgg 1418
||||||||||||||||||
Sbjct: 1519 caacgagaacaccaacgg 1536
>IST3091
Length = 1064
Score = 44.1 bits (22), Expect = 6e-04
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 1401 caacgagaacaccaacgggctgcttcgccagtacttccccaa 1442
||||||||||||||| || || || |||||||| ||||||||
Sbjct: 866 caacgagaacaccaatggtctcctgcgccagtatttccccaa 907
>ISMsm6
Length = 1765
Score = 42.1 bits (21), Expect = 0.002
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 1254 ggccagcatcaccaccttgcccgcg 1278
|||||| ||||||||||||||||||
Sbjct: 197 ggccaggatcaccaccttgcccgcg 173
>ISBlo7
Length = 1272
Score = 42.1 bits (21), Expect = 0.002
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 1387 tggcagcgcggcagcaacgagaaca 1411
|||||||| ||||||||||||||||
Sbjct: 955 tggcagcgtggcagcaacgagaaca 979
>ISPa59
Length = 1113
Score = 36.2 bits (18), Expect = 0.14
Identities = 51/62 (82%)
Strand = Plus / Plus
Query: 1387 tggcagcgcggcagcaacgagaacaccaacgggctgcttcgccagtacttccccaagggc 1446
||||| |||||||||||||| |||| || || ||| | |||||||| | |||||||||
Sbjct: 860 tggcaacgcggcagcaacgaaaacataaatggcctgatccgccagtatctgcccaagggc 919
Query: 1447 ac 1448
||
Sbjct: 920 ac 921
>ISPa37
Length = 1454
Score = 36.2 bits (18), Expect = 0.14
Identities = 27/30 (90%)
Strand = Plus / Plus
Query: 853 tggtcacccgagcagatcgccaacaggctg 882
||||||||||| ||||| |||||| |||||
Sbjct: 649 tggtcacccgaacagattgccaaccggctg 678
Score = 34.2 bits (17), Expect = 0.54
Identities = 56/69 (81%)
Strand = Plus / Plus
Query: 1387 tggcagcgcggcagcaacgagaacaccaacgggctgcttcgccagtacttccccaagggc 1446
||||||||||| | |||||||| || ||||| || || || || || ||||| || |||
Sbjct: 1231 tggcagcgcggtacgaacgagaatacaaacggtcttctacggcaatatttcccgaaaggc 1290
Query: 1447 accgacctg 1455
|||||||||
Sbjct: 1291 accgacctg 1299
Score = 30.2 bits (15), Expect = 8.4
Identities = 24/27 (88%)
Strand = Plus / Plus
Query: 1156 tccgcgatcggcaccctggtcgagcgc 1182
||||| ||||| || ||||||||||||
Sbjct: 949 tccgccatcgggacgctggtcgagcgc 975
>ISSer1
Length = 1447
Score = 36.2 bits (18), Expect = 0.14
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 243 ggtgctcgtcgggttcga 260
||||||||||||||||||
Sbjct: 632 ggtgctcgtcgggttcga 649
>ISHarch17
Length = 1585
Score = 34.2 bits (17), Expect = 0.54
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 1356 gcaggtctacttctgcg 1372
|||||||||||||||||
Sbjct: 1396 gcaggtctacttctgcg 1380
>ISHaru3
Length = 1478
Score = 34.2 bits (17), Expect = 0.54
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 1356 gcaggtctacttctgcg 1372
|||||||||||||||||
Sbjct: 1343 gcaggtctacttctgcg 1327
>ISMno13
Length = 2459
Score = 34.2 bits (17), Expect = 0.54
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 1512 ccgcaagaccctcggct 1528
|||||||||||||||||
Sbjct: 1136 ccgcaagaccctcggct 1120
>ISRme10
Length = 1529
Score = 34.2 bits (17), Expect = 0.54
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 916 gtgtcccacgagaccatctac 936
|||||||||||||| ||||||
Sbjct: 616 gtgtcccacgagacgatctac 636
Score = 34.2 bits (17), Expect = 0.54
Identities = 23/25 (92%)
Strand = Plus / Plus
Query: 1114 gggcactgggagggcgacctgatca 1138
||||| ||||| |||||||||||||
Sbjct: 811 gggcattgggaaggcgacctgatca 835
>ISMsm5
Length = 1103
Score = 34.2 bits (17), Expect = 0.54
Identities = 23/25 (92%)
Strand = Plus / Plus
Query: 133 gcggcgcggcagctgggggtctcgc 157
|||||||||||| ||||||| ||||
Sbjct: 186 gcggcgcggcaggtgggggtgtcgc 210
>ISPa42
Length = 16941
Score = 34.2 bits (17), Expect = 0.54
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 1331 agcagatcaccttggccaccg 1351
||||||||||||||| |||||
Sbjct: 11020 agcagatcaccttgggcaccg 11040
>ISCg2
Length = 1636
Score = 34.2 bits (17), Expect = 0.54
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 1114 gggcactgggagggcga 1130
|||||||||||||||||
Sbjct: 1156 gggcactgggagggcga 1172
>ISHmu7
Length = 1455
Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 406 ttccacgccctgctcg 421
||||||||||||||||
Sbjct: 89 ttccacgccctgctcg 104
>ISAod1
Length = 1334
Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 878 ggctgatccaggacaa 893
||||||||||||||||
Sbjct: 903 ggctgatccaggacaa 918
>ISSmi1
Length = 1543
Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 1361 tctacttctgcgaccc 1376
||||||||||||||||
Sbjct: 991 tctacttctgcgaccc 1006
>ISCysp19
Length = 1214
Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 1064 tggtgatgatcgccga 1079
||||||||||||||||
Sbjct: 1094 tggtgatgatcgccga 1109
>ISMtsp5
Length = 1347
Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 1443 gggcaccgacctgacc 1458
||||||||||||||||
Sbjct: 806 gggcaccgacctgacc 821
>ISMno23
Length = 2271
Score = 32.2 bits (16), Expect = 2.1
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 763 gccgccgctggccgggcccg 782
||||||||||||||| ||||
Sbjct: 1732 gccgccgctggccggccccg 1751
>ISRjo1
Length = 1967
Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 517 ctcaccctcgccgatc 532
||||||||||||||||
Sbjct: 378 ctcaccctcgccgatc 393
>ISAar16
Length = 1396
Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 1019 cccacgccgcgcccgg 1034
||||||||||||||||
Sbjct: 617 cccacgccgcgcccgg 602
>ISMex3
Length = 1399
Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 944 tctacctgcaggcccg 959
||||||||||||||||
Sbjct: 643 tctacctgcaggcccg 658
>ISDds1
Length = 1248
Score = 32.2 bits (16), Expect = 2.1
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 415 ctgctcgagcagggcatcca 434
|||||||||||| |||||||
Sbjct: 490 ctgctcgagcagcgcatcca 509
Score = 30.2 bits (15), Expect = 8.4
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 415 ctgctcgagcagggcatcc 433
|||||||||||| ||||||
Sbjct: 501 ctgctcgagcagcgcatcc 483
>ISPen2
Length = 1232
Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 687 caagagcagcgtcagc 702
||||||||||||||||
Sbjct: 211 caagagcagcgtcagc 226
>ISPpu22
Length = 1232
Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 687 caagagcagcgtcagc 702
||||||||||||||||
Sbjct: 211 caagagcagcgtcagc 226
>IS219
Length = 1654
Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 326 tcctgcgccgggctgg 341
||||||||||||||||
Sbjct: 180 tcctgcgccgggctgg 195
>IS1471
Length = 1113
Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 111 ccaggggatggccgtg 126
||||||||||||||||
Sbjct: 259 ccaggggatggccgtg 274
>ISMaq7
Length = 1379
Score = 30.2 bits (15), Expect = 8.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 91 gatctgctggccctc 105
|||||||||||||||
Sbjct: 1268 gatctgctggccctc 1282
>ISAhy3
Length = 1221
Score = 30.2 bits (15), Expect = 8.4
Identities = 30/35 (85%)
Strand = Plus / Plus
Query: 1408 aacaccaacgggctgcttcgccagtacttccccaa 1442
|||||||| |||||| | || || |||||||||||
Sbjct: 1044 aacaccaatgggctgatccgacaatacttccccaa 1078
>ISXci1
Length = 2013
Score = 30.2 bits (15), Expect = 8.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 355 gtggtgccgctggcg 369
|||||||||||||||
Sbjct: 819 gtggtgccgctggcg 833
>ISHla15
Length = 1835
Score = 30.2 bits (15), Expect = 8.4
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 690 gagcagcgtcagccgtgag 708
|||| ||||||||||||||
Sbjct: 1795 gagcggcgtcagccgtgag 1813
>ISSfr3
Length = 1448
Score = 30.2 bits (15), Expect = 8.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 352 gcggtggtgccgctg 366
|||||||||||||||
Sbjct: 373 gcggtggtgccgctg 387
>ISActu1
Length = 1440
Score = 30.2 bits (15), Expect = 8.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 876 caggctgatccagga 890
|||||||||||||||
Sbjct: 149 caggctgatccagga 163
>ISPa41
Length = 1168
Score = 30.2 bits (15), Expect = 8.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 649 ctgacgctgagcgcg 663
|||||||||||||||
Sbjct: 336 ctgacgctgagcgcg 350
>ISPna5
Length = 1088
Score = 30.2 bits (15), Expect = 8.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 94 ctgctggccctcaag 108
|||||||||||||||
Sbjct: 270 ctgctggccctcaag 284
>ISStsp8
Length = 881
Score = 30.2 bits (15), Expect = 8.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 1077 cgagcggccggccga 1091
|||||||||||||||
Sbjct: 495 cgagcggccggccga 481
>ISStsp7
Length = 976
Score = 30.2 bits (15), Expect = 8.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 1077 cgagcggccggccga 1091
|||||||||||||||
Sbjct: 592 cgagcggccggccga 578
>ISAnsp14
Length = 1629
Score = 30.2 bits (15), Expect = 8.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 746 ggaccgcgcacgcgc 760
|||||||||||||||
Sbjct: 1529 ggaccgcgcacgcgc 1543
>ISVsp9
Length = 1730
Score = 30.2 bits (15), Expect = 8.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 393 ggccaaggagcagtt 407
|||||||||||||||
Sbjct: 923 ggccaaggagcagtt 937
>ISApr12
Length = 1524
Score = 30.2 bits (15), Expect = 8.4
Identities = 25/27 (92%), Gaps = 1/27 (3%)
Strand = Plus / Plus
Query: 363 gctggcgcagcggcgggctcaagcggc 389
||||||||||| ||||| |||||||||
Sbjct: 461 gctggcgcagccgcggg-tcaagcggc 486
>ISMno8
Length = 1466
Score = 30.2 bits (15), Expect = 8.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 1085 cggccgaggtcgagg 1099
|||||||||||||||
Sbjct: 562 cggccgaggtcgagg 576
>ISAcma50
Length = 2718
Score = 30.2 bits (15), Expect = 8.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 821 ggcagtacgtgcagg 835
|||||||||||||||
Sbjct: 675 ggcagtacgtgcagg 689
>ISAcma38
Length = 2708
Score = 30.2 bits (15), Expect = 8.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 821 ggcagtacgtgcagg 835
|||||||||||||||
Sbjct: 680 ggcagtacgtgcagg 694
>ISMsm10
Length = 1661
Score = 30.2 bits (15), Expect = 8.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 722 cggtgaccggggtgt 736
|||||||||||||||
Sbjct: 1063 cggtgaccggggtgt 1049
>ISMex38
Length = 3841
Score = 30.2 bits (15), Expect = 8.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 473 cgaccggctcgcgct 487
|||||||||||||||
Sbjct: 1560 cgaccggctcgcgct 1574
>ISMex14
Length = 1381
Score = 30.2 bits (15), Expect = 8.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 173 aggtgctgcgctcgc 187
|||||||||||||||
Sbjct: 281 aggtgctgcgctcgc 267
>ISAnsp5
Length = 2192
Score = 30.2 bits (15), Expect = 8.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 1308 gggcagcgagatggc 1322
|||||||||||||||
Sbjct: 77 gggcagcgagatggc 91
>ISStma11
Length = 4621
Score = 30.2 bits (15), Expect = 8.4
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 342 ggcggtgccggcggtggtg 360
|||| ||||||||||||||
Sbjct: 1948 ggcgatgccggcggtggtg 1930
>ISMex8
Length = 2597
Score = 30.2 bits (15), Expect = 8.4
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 346 gtgccggcggtggtgccgc 364
|||||| ||||||||||||
Sbjct: 1654 gtgccgccggtggtgccgc 1636
>ISAzo28
Length = 1486
Score = 30.2 bits (15), Expect = 8.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 443 ccgcggccacacgag 457
|||||||||||||||
Sbjct: 128 ccgcggccacacgag 142
>ISThsp9
Length = 6215
Score = 30.2 bits (15), Expect = 8.4
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 1264 accaccttgcccgcgcacc 1282
|||| ||||||||||||||
Sbjct: 1582 accatcttgcccgcgcacc 1600
>ISSen2
Length = 846
Score = 30.2 bits (15), Expect = 8.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 361 ccgctggcgcagcgg 375
|||||||||||||||
Sbjct: 392 ccgctggcgcagcgg 378
>ISCARN26
Length = 1214
Score = 30.2 bits (15), Expect = 8.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 418 ctcgagcagggcatc 432
|||||||||||||||
Sbjct: 738 ctcgagcagggcatc 724
>ISThsp1
Length = 1539
Score = 30.2 bits (15), Expect = 8.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 1242 cgacgcgctgctggc 1256
|||||||||||||||
Sbjct: 578 cgacgcgctgctggc 592
>ISAli10
Length = 2584
Score = 30.2 bits (15), Expect = 8.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 285 ggccgaggccggcgg 299
|||||||||||||||
Sbjct: 737 ggccgaggccggcgg 751
>ISDds9
Length = 1254
Score = 30.2 bits (15), Expect = 8.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 205 gtcaagcgcaccagg 219
|||||||||||||||
Sbjct: 113 gtcaagcgcaccagg 127
>ISRssp2
Length = 4633
Score = 30.2 bits (15), Expect = 8.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 1254 ggccagcatcaccac 1268
|||||||||||||||
Sbjct: 1978 ggccagcatcaccac 1992
>ISSba6
Length = 1420
Score = 30.2 bits (15), Expect = 8.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 491 atgaccagtgggtga 505
|||||||||||||||
Sbjct: 824 atgaccagtgggtga 838
>ISLxx6
Length = 919
Score = 30.2 bits (15), Expect = 8.4
Identities = 33/39 (84%)
Strand = Plus / Plus
Query: 1513 cgcaagaccctcggctgggccacacccgccgaacgcctc 1551
||||| || |||||||||| || || ||||||||||||
Sbjct: 358 cgcaaaacgctcggctgggaaaccccagccgaacgcctc 396
>ISSsp5
Length = 2501
Score = 30.2 bits (15), Expect = 8.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 518 tcaccctcgccgatc 532
|||||||||||||||
Sbjct: 1400 tcaccctcgccgatc 1414
>ISBlma8
Length = 1263
Score = 30.2 bits (15), Expect = 8.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 978 ggtcgcccaggcgct 992
|||||||||||||||
Sbjct: 520 ggtcgcccaggcgct 506
>ISApr4
Length = 3691
Score = 30.2 bits (15), Expect = 8.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 89 cggatctgctggccc 103
|||||||||||||||
Sbjct: 418 cggatctgctggccc 404
>ISNmo3
Length = 1061
Score = 30.2 bits (15), Expect = 8.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 83 ggctggcggatctgc 97
|||||||||||||||
Sbjct: 432 ggctggcggatctgc 446
>ISSisp1
Length = 1236
Score = 30.2 bits (15), Expect = 8.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 1303 gaccagggcagcgag 1317
|||||||||||||||
Sbjct: 888 gaccagggcagcgag 902
>ISBcen21
Length = 1231
Score = 30.2 bits (15), Expect = 8.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 761 acgccgccgctggcc 775
|||||||||||||||
Sbjct: 520 acgccgccgctggcc 506
>ISRba2
Length = 1365
Score = 30.2 bits (15), Expect = 8.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 1066 gtgatgatcgccgag 1080
|||||||||||||||
Sbjct: 659 gtgatgatcgccgag 673
>ISSod7
Length = 1419
Score = 30.2 bits (15), Expect = 8.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 491 atgaccagtgggtga 505
|||||||||||||||
Sbjct: 823 atgaccagtgggtga 837
>ISRsp1
Length = 3481
Score = 30.2 bits (15), Expect = 8.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 783 gccgaaaccctcgaa 797
|||||||||||||||
Sbjct: 3039 gccgaaaccctcgaa 3053
>ISRso19
Length = 1956
Score = 30.2 bits (15), Expect = 8.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 355 gtggtgccgctggcg 369
|||||||||||||||
Sbjct: 807 gtggtgccgctggcg 821
>ISBfu1
Length = 553
Score = 30.2 bits (15), Expect = 8.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 1021 cacgccgcgcccggg 1035
|||||||||||||||
Sbjct: 499 cacgccgcgcccggg 513
>IS1632
Length = 1394
Score = 30.2 bits (15), Expect = 8.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 946 tacctgcaggcccgc 960
|||||||||||||||
Sbjct: 641 tacctgcaggcccgc 655
>IS1295
Length = 1456
Score = 30.2 bits (15), Expect = 8.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 947 acctgcaggcccgcg 961
|||||||||||||||
Sbjct: 250 acctgcaggcccgcg 236
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_47_length_1606_cov_162.353_ID_5262
(1606 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISAzo28 | IS110 | Azoarcus sp. | 42 | 0.002 | |
| ISCc2 | IS110 | Caulobacter crescentus | 38 | 0.034 | |
| ISBcen8 | IS110 | Burkholderia cenocepacia | 38 | 0.034 | |
| ISAzs31 | IS630 | Azospirillum sp. | 36 | 0.14 | |
| ISAar7 | IS21 | Arthrobacter arilaitensis | 36 | 0.14 | |
| ISMno30 | ISL3 | Methylobacterium nodulans | 34 | 0.54 | |
| ISArsp6 | Tn3 | Arthrobacter sp. | 34 | 0.54 | |
| ISMch4 | IS110 | IS1111 | Methylobacterium chloromethanicum | 34 | 0.54 |
| ISAar17 | IS110 | Arthrobacter arilaitensis | 34 | 0.54 | |
| ISAar2 | IS110 | Arthrobacter arilaitensis | 34 | 0.54 | |
| ISApr7 | IS1595 | ISNwi1 | Alpha proteobacterium | 34 | 0.54 |
| ISAli5 | IS3 | IS150 | Azospirillum lipoferum | 34 | 0.54 |
| ISMpo2 | IS1595 | ISNwi1 | Methylobacterium populi | 34 | 0.54 |
| ISNmo3 | IS481 | Nitrococcus mobilis | 34 | 0.54 | |
| TnAs3 | Tn3 | Aeromonas salmonicida | 32 | 2.1 | |
| ISMno21 | IS630 | Methylobacterium nodulans | 32 | 2.1 | |
| ISPa38 | Tn3 | Pseudomonas aeruginosa | 32 | 2.1 | |
| ISAzs5 | ISAs1 | Azospirillum sp. | 32 | 2.1 | |
| ISVsp6 | ISAs1 | Verrucomicrobium spinosum | 32 | 2.1 | |
| ISVsp1 | IS1634 | Verrucomicrobium spinosum | 32 | 2.1 | |
| ISHwa12 | ISH3 | Haloquadratum walsbyi | 32 | 2.1 | |
| ISPfr5 | IS481 | Propionibacterium freudenreichii | 32 | 2.1 | |
| ISArsp3 | IS110 | Arthrobacter sp. | 32 | 2.1 | |
| ISRer1 | IS1380 | Rhodococcus erythropolis | 32 | 2.1 | |
| ISVsp18 | ISAs1 | Verrucomicrobium spinosum | 32 | 2.1 | |
| ISCARN27 | IS256 | Metagenomic data from CARNOULES | 32 | 2.1 | |
| ISGdi15 | IS110 | IS1111 | Gluconacetobacter diazotrophicus | 32 | 2.1 |
| ISCwa4 | IS66 | ISBst12 | Crocosphaera watsonii | 32 | 2.1 |
| ISXau1 | IS3 | IS407 | Xanthobacter autotrophicus | 32 | 2.1 |
| ISMamg1 | IS3 | IS407 | Magnetospirillum magneticum | 32 | 2.1 |
| ISSod9 | Tn3 | Shewanella oneidensis | 32 | 2.1 | |
| ISXac2 | IS3 | IS407 | Xanthomonas axonopodis | 32 | 2.1 |
| ISPpa5 | IS66 | Paracoccus pantotrophus | 32 | 2.1 | |
| ISBlo1 | IS21 | Bifidobacterium longum | 32 | 2.1 | |
| ISRsp1 | IS66 | - | Rhizobium sp. | 32 | 2.1 |
| IS931 | IS256 | - | Burkholderia cepacia | 32 | 2.1 |
| IS1141 | IS3 | IS3 | Mycobacterium intracellulare | 32 | 2.1 |
| ISAeme9 | IS200/IS605 | IS1341 | Aeromonas media | 30 | 8.4 |
| ISHko1 | IS200/IS605 | IS1341 | Halorubrum kocurii | 30 | 8.4 |
| ISMno29 | IS110 | Methylobacterium nodulans | 30 | 8.4 | |
| ISRsp12 | Tn3 | Rhizhobium sp. | 30 | 8.4 | |
| TnAs1 | Tn3 | Aeromonas salmonicida | 30 | 8.4 | |
| ISMal1 | ISKra4 | ISAzba1 | Mesorhizobium alhagi | 30 | 8.4 |
| ISMyo1 | IS256 | Mycobacterium yongonense | 30 | 8.4 | |
| ISSuac1 | IS256 | Sulfobacillus acidophilus | 30 | 8.4 | |
| ISKra3 | ISAzo13 | Ktedonobacter racemifer | 30 | 8.4 | |
| ISPa43 | Tn3 | Pseudomonas aeruginosa | 30 | 8.4 | |
| ISPmar1 | IS6 | Paracoccus marcusii | 30 | 8.4 | |
| ISVsp8 | IS1380 | Verrucomicrobium spinosum | 30 | 8.4 | |
| ISBmu23 | IS5 | IS5 | Burkholderia multivorans | 30 | 8.4 |
| ISRpa9 | IS5 | IS5 | Rhodopseudomonas palustris | 30 | 8.4 |
| ISAcp1 | IS5 | IS5 | Acidobacterium capsulatum | 30 | 8.4 |
| ISFsp13 | ISAzo13 | Frankia sp. | 30 | 8.4 | |
| ISMno31 | IS3 | IS150 | Methylobacterium nodulans | 30 | 8.4 |
| ISMno15 | IS1182 | Methylobacterium nodulans | 30 | 8.4 | |
| ISMpo9 | IS701 | Methylobacterium populi | 30 | 8.4 | |
| ISPfr12 | IS3 | IS51 | Propionibacterium freudenreichii | 30 | 8.4 |
| ISAau2 | IS21 | Arthrobacter aurescens | 30 | 8.4 | |
| ISRop1 | IS1380 | Rhodococcus opacus | 30 | 8.4 | |
| ISMsm12 | IS1380 | Mycobacterium smegmatis | 30 | 8.4 | |
| ISVsp19 | IS1380 | Verrucomicrobium spinosum | 30 | 8.4 | |
| ISBf4 | IS1182 | Bacteroides fragilis | 30 | 8.4 | |
| ISSpi4 | IS3 | IS3 | Shewanella piezotolerans | 30 | 8.4 |
| ISAde3 | IS3 | IS407 | Anaeromyxobacter dehalogenans | 30 | 8.4 |
| ISMdi17 | IS5 | IS1031 | Methylobacterium dichloromethanicum | 30 | 8.4 |
| ISRce1 | ISAs1 | Rhodospirillum centenum | 30 | 8.4 | |
| ISThsp12 | IS1634 | Thiomonas sp. | 30 | 8.4 | |
| ISCARN43 | IS1595 | ISPna2 | Metagenomic data from CARNOULES | 30 | 8.4 |
| ISThsp9 | Tn3 | Thiomonas sp. | 30 | 8.4 | |
| ISBj7_B | IS66 | Bradyrhizobium japonicum | 30 | 8.4 | |
| ISMno4 | IS66 | ISBst12 | Methylobacterium nodulans | 30 | 8.4 |
| ISShes10 | IS30 | Shewanella sp. | 30 | 8.4 | |
| ISOgr3 | IS5 | IS903 | Oceanicola granulosus | 30 | 8.4 |
| ISRpa7 | ISAs1 | Rhodopseudomonas palustris | 30 | 8.4 | |
| ISGur9 | IS21 | Geobacter uraniumreducens | 30 | 8.4 | |
| ISBrsp4 | IS481 | Bradyrhizobium sp. | 30 | 8.4 | |
| ISSav2 | IS701 | Streptomyces avermitilis | 30 | 8.4 | |
| ISMfl1 | IS4 | IS4 | Mycobacterium flavescens | 30 | 8.4 |
| ISOcsp1 | IS21 | Ochrobactrum sp. | 30 | 8.4 | |
| ISBcen6 | IS3 | IS2 | Burkholderia cenocepacia | 30 | 8.4 |
| ISBmu1 | IS21 | Burkholderia multivorans | 30 | 8.4 | |
| IS881 | IS5 | IS5 | Ralstonia eutropha | 30 | 8.4 |
| IS883 | IS66 | Ralstonia eutropha | 30 | 8.4 | |
| ISMmg1 | IS110 | IS1111 | Magnetospirillum magnetotacticum | 30 | 8.4 |
| ISPsy13 | IS3 | IS3 | Pseudomonas syringae | 30 | 8.4 |
| ISBugl1 | IS3 | IS2 | Burkholderia glumae | 30 | 8.4 |
| IS220 | IS1380 | - | Mycobacterium fortuitum | 30 | 8.4 |
| IS204 | ISL3 | - | Nocardia asteroides | 30 | 8.4 |
| IS2001 | ISL3 | - | Bifidobacterium lactis | 30 | 8.4 |
| IS1417 | IS3 | IS2 | Burkholderia glumae | 30 | 8.4 |
>ISAzo28
Length = 1486
Score = 42.1 bits (21), Expect = 0.002
Identities = 42/49 (85%)
Strand = Plus / Minus
Query: 1113 acaccggcttccagtagtcgctggtcgcctccatcacgacccgctcgac 1161
|||||||||||||||| | | ||| ||||||||| ||||| |||||||
Sbjct: 456 acaccggcttccagtacaccccggtggcctccatcgcgacctgctcgac 408
>ISCc2
Length = 1213
Score = 38.2 bits (19), Expect = 0.034
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1135 ggtcgcctccatcacgacc 1153
|||||||||||||||||||
Sbjct: 404 ggtcgcctccatcacgacc 386
>ISBcen8
Length = 1185
Score = 38.2 bits (19), Expect = 0.034
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1135 ggtcgcctccatcacgacc 1153
|||||||||||||||||||
Sbjct: 376 ggtcgcctccatcacgacc 358
>ISAzs31
Length = 1160
Score = 36.2 bits (18), Expect = 0.14
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 544 atccaggcgctggaccgc 561
||||||||||||||||||
Sbjct: 598 atccaggcgctggaccgc 615
>ISAar7
Length = 2983
Score = 36.2 bits (18), Expect = 0.14
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 669 ggtcatcgaagccgcccg 686
||||||||||||||||||
Sbjct: 1826 ggtcatcgaagccgcccg 1809
>ISMno30
Length = 1773
Score = 34.2 bits (17), Expect = 0.54
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 891 ccgcggtgcgggccgcg 907
|||||||||||||||||
Sbjct: 1608 ccgcggtgcgggccgcg 1624
Score = 30.2 bits (15), Expect = 8.4
Identities = 21/23 (91%)
Strand = Plus / Plus
Query: 700 gaacgcctcctcgagggttgcga 722
||||||||| ||||||||||||
Sbjct: 1106 gaacgcctcgccgagggttgcga 1128
>ISArsp6
Length = 26712
Score = 34.2 bits (17), Expect = 0.54
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 502 gatgacgatcgcggccg 518
|||||||||||||||||
Sbjct: 5457 gatgacgatcgcggccg 5441
>ISMch4
Length = 1631
Score = 34.2 bits (17), Expect = 0.54
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 215 agcaggtgccagatgat 231
|||||||||||||||||
Sbjct: 1024 agcaggtgccagatgat 1008
>ISAar17
Length = 1473
Score = 34.2 bits (17), Expect = 0.54
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 496 ctcggcgatgacgatcgcggc 516
||||||||||| |||||||||
Sbjct: 1126 ctcggcgatgatgatcgcggc 1106
>ISAar2
Length = 1473
Score = 34.2 bits (17), Expect = 0.54
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 496 ctcggcgatgacgatcgcggc 516
||||||||||| |||||||||
Sbjct: 1126 ctcggcgatgatgatcgcggc 1106
>ISApr7
Length = 3923
Score = 34.2 bits (17), Expect = 0.54
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 1558 gcccattttcagcccggaacg 1578
|||||||||||| ||||||||
Sbjct: 2583 gcccattttcaggccggaacg 2603
>ISAli5
Length = 1266
Score = 34.2 bits (17), Expect = 0.54
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 928 ggtcaggtcgcgcagca 944
|||||||||||||||||
Sbjct: 701 ggtcaggtcgcgcagca 685
>ISMpo2
Length = 3089
Score = 34.2 bits (17), Expect = 0.54
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 671 tcatcgaagccgcccgc 687
|||||||||||||||||
Sbjct: 2376 tcatcgaagccgcccgc 2392
>ISNmo3
Length = 1061
Score = 34.2 bits (17), Expect = 0.54
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 1315 ccgctcgatgatctgct 1331
|||||||||||||||||
Sbjct: 335 ccgctcgatgatctgct 351
>TnAs3
Length = 18735
Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 344 gcctcgcccagcaccc 359
||||||||||||||||
Sbjct: 4234 gcctcgcccagcaccc 4219
>ISMno21
Length = 1162
Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 281 cgtcgcgcgatccggc 296
||||||||||||||||
Sbjct: 155 cgtcgcgcgatccggc 170
>ISPa38
Length = 6455
Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 752 tccgcgagcaccttgg 767
||||||||||||||||
Sbjct: 3023 tccgcgagcaccttgg 3038
Score = 30.2 bits (15), Expect = 8.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 464 gcggtcgggaactgg 478
|||||||||||||||
Sbjct: 1857 gcggtcgggaactgg 1871
>ISAzs5
Length = 1333
Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 332 gccatgaccgcagcct 347
||||||||||||||||
Sbjct: 462 gccatgaccgcagcct 477
>ISVsp6
Length = 1241
Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 739 tgccctggccaggtcc 754
||||||||||||||||
Sbjct: 761 tgccctggccaggtcc 746
>ISVsp1
Length = 2082
Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 395 ttgcccttgctcttgc 410
||||||||||||||||
Sbjct: 1478 ttgcccttgctcttgc 1463
>ISHwa12
Length = 1509
Score = 32.2 bits (16), Expect = 2.1
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 829 gctggcgaccaccgacagct 848
||||||||||| ||||||||
Sbjct: 1322 gctggcgaccagcgacagct 1341
>ISPfr5
Length = 1329
Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 1013 accgcgtcaagcacgt 1028
||||||||||||||||
Sbjct: 1028 accgcgtcaagcacgt 1043
>ISArsp3
Length = 1596
Score = 32.2 bits (16), Expect = 2.1
Identities = 37/44 (84%)
Strand = Plus / Minus
Query: 926 cgggtcaggtcgcgcagcacccggatcggtcgcggtggcacgaa 969
||||||||||| ||||| | |||||||| |||| ||||||||
Sbjct: 699 cgggtcaggtcccgcagttcacggatcggaggcgggggcacgaa 656
Score = 30.2 bits (15), Expect = 8.4
Identities = 27/31 (87%)
Strand = Plus / Minus
Query: 848 ttgatgcaggcatcctccagcagcttctcca 878
||||||||||| ||||| || || |||||||
Sbjct: 777 ttgatgcaggcgtcctcgaggagtttctcca 747
>ISRer1
Length = 1687
Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 885 tcttctccgcggtgcg 900
||||||||||||||||
Sbjct: 227 tcttctccgcggtgcg 212
>ISVsp18
Length = 1241
Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 739 tgccctggccaggtcc 754
||||||||||||||||
Sbjct: 761 tgccctggccaggtcc 746
>ISCARN27
Length = 1356
Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 1177 ccggttggccagctcc 1192
||||||||||||||||
Sbjct: 712 ccggttggccagctcc 697
>ISGdi15
Length = 1602
Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 275 ccgcgacgtcgcgcga 290
||||||||||||||||
Sbjct: 844 ccgcgacgtcgcgcga 829
>ISCwa4
Length = 1870
Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 617 gcatcgatggcatcaa 632
||||||||||||||||
Sbjct: 869 gcatcgatggcatcaa 884
>ISXau1
Length = 1272
Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 1320 cgatgatctgctcctc 1335
||||||||||||||||
Sbjct: 101 cgatgatctgctcctc 86
>ISMamg1
Length = 1256
Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 1320 cgatgatctgctcctc 1335
||||||||||||||||
Sbjct: 101 cgatgatctgctcctc 86
>ISSod9
Length = 4412
Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 1317 gctcgatgatctgctc 1332
||||||||||||||||
Sbjct: 1988 gctcgatgatctgctc 2003
>ISXac2
Length = 1195
Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 1318 ctcgatgatctgctcc 1333
||||||||||||||||
Sbjct: 848 ctcgatgatctgctcc 833
>ISPpa5
Length = 2829
Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 940 cagcacccggatcggt 955
||||||||||||||||
Sbjct: 1690 cagcacccggatcggt 1675
>ISBlo1
Length = 2590
Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 625 ggcatcaacgcggccc 640
||||||||||||||||
Sbjct: 1107 ggcatcaacgcggccc 1092
>ISRsp1
Length = 3481
Score = 32.2 bits (16), Expect = 2.1
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 1225 cacctcctgcacccgc 1240
||||||||||||||||
Sbjct: 624 cacctcctgcacccgc 609
>IS931
Length = 1477
Score = 32.2 bits (16), Expect = 2.1
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 603 gcaccgcgatgtcggcatcg 622
||||||| ||||||||||||
Sbjct: 1287 gcaccgccatgtcggcatcg 1268
>IS1141
Length = 1588
Score = 32.2 bits (16), Expect = 2.1
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 673 atcgaagccgcccgccggca 692
||||| ||||||||||||||
Sbjct: 1293 atcgaggccgcccgccggca 1312
>ISAeme9
Length = 1332
Score = 30.2 bits (15), Expect = 8.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 790 cgcagccatcatcgc 804
|||||||||||||||
Sbjct: 630 cgcagccatcatcgc 616
>ISHko1
Length = 1389
Score = 30.2 bits (15), Expect = 8.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 146 gcgtcggcgttgacc 160
|||||||||||||||
Sbjct: 698 gcgtcggcgttgacc 712
>ISMno29
Length = 1192
Score = 30.2 bits (15), Expect = 8.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 898 gcgggccgcgaccag 912
|||||||||||||||
Sbjct: 613 gcgggccgcgaccag 599
>ISRsp12
Length = 3701
Score = 30.2 bits (15), Expect = 8.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 502 gatgacgatcgcggc 516
|||||||||||||||
Sbjct: 3519 gatgacgatcgcggc 3505
>TnAs1
Length = 6694
Score = 30.2 bits (15), Expect = 8.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 180 cgccgaggtcgcgga 194
|||||||||||||||
Sbjct: 6035 cgccgaggtcgcgga 6021
>ISMal1
Length = 2308
Score = 30.2 bits (15), Expect = 8.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 613 gtcggcatcgatggc 627
|||||||||||||||
Sbjct: 1485 gtcggcatcgatggc 1499
>ISMyo1
Length = 1472
Score = 30.2 bits (15), Expect = 8.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 601 cagcaccgcgatgtc 615
|||||||||||||||
Sbjct: 684 cagcaccgcgatgtc 670
>ISSuac1
Length = 1414
Score = 30.2 bits (15), Expect = 8.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 640 cagcatccgttccag 654
|||||||||||||||
Sbjct: 463 cagcatccgttccag 449
>ISKra3
Length = 1287
Score = 30.2 bits (15), Expect = 8.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 264 ccttcttcttcccgc 278
|||||||||||||||
Sbjct: 246 ccttcttcttcccgc 232
>ISPa43
Length = 19903
Score = 30.2 bits (15), Expect = 8.4
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 1324 gatctgctcctcatcggtc 1342
||||||| |||||||||||
Sbjct: 12636 gatctgcgcctcatcggtc 12618
Score = 30.2 bits (15), Expect = 8.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 632 acgcggcccagcatc 646
|||||||||||||||
Sbjct: 16033 acgcggcccagcatc 16019
>ISPmar1
Length = 821
Score = 30.2 bits (15), Expect = 8.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 925 gcgggtcaggtcgcg 939
|||||||||||||||
Sbjct: 249 gcgggtcaggtcgcg 263
>ISVsp8
Length = 1802
Score = 30.2 bits (15), Expect = 8.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 1286 tcggccttgccgatg 1300
|||||||||||||||
Sbjct: 1129 tcggccttgccgatg 1115
>ISBmu23
Length = 1210
Score = 30.2 bits (15), Expect = 8.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 640 cagcatccgttccag 654
|||||||||||||||
Sbjct: 270 cagcatccgttccag 256
>ISRpa9
Length = 1539
Score = 30.2 bits (15), Expect = 8.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 1319 tcgatgatctgctcc 1333
|||||||||||||||
Sbjct: 237 tcgatgatctgctcc 223
>ISAcp1
Length = 1483
Score = 30.2 bits (15), Expect = 8.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 1319 tcgatgatctgctcc 1333
|||||||||||||||
Sbjct: 183 tcgatgatctgctcc 169
>ISFsp13
Length = 1724
Score = 30.2 bits (15), Expect = 8.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 1068 cgttgaccagccacg 1082
|||||||||||||||
Sbjct: 1073 cgttgaccagccacg 1087
>ISMno31
Length = 1510
Score = 30.2 bits (15), Expect = 8.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 1304 aaggcagcgacccgc 1318
|||||||||||||||
Sbjct: 1273 aaggcagcgacccgc 1259
>ISMno15
Length = 1561
Score = 30.2 bits (15), Expect = 8.4
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 249 cgaccgcgacgatcgcctt 267
||||||||||||| |||||
Sbjct: 478 cgaccgcgacgatggcctt 460
>ISMpo9
Length = 1413
Score = 30.2 bits (15), Expect = 8.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 890 tccgcggtgcgggcc 904
|||||||||||||||
Sbjct: 317 tccgcggtgcgggcc 303
>ISPfr12
Length = 1350
Score = 30.2 bits (15), Expect = 8.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 1280 accaactcggccttg 1294
|||||||||||||||
Sbjct: 1132 accaactcggccttg 1118
>ISAau2
Length = 2222
Score = 30.2 bits (15), Expect = 8.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 894 cggtgcgggccgcga 908
|||||||||||||||
Sbjct: 200 cggtgcgggccgcga 214
>ISRop1
Length = 4160
Score = 30.2 bits (15), Expect = 8.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 573 gggccaggtgagcct 587
|||||||||||||||
Sbjct: 736 gggccaggtgagcct 750
>ISMsm12
Length = 3256
Score = 30.2 bits (15), Expect = 8.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 113 gcttcgagttgtcgg 127
|||||||||||||||
Sbjct: 2069 gcttcgagttgtcgg 2055
>ISVsp19
Length = 1802
Score = 30.2 bits (15), Expect = 8.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 1286 tcggccttgccgatg 1300
|||||||||||||||
Sbjct: 1129 tcggccttgccgatg 1115
>ISBf4
Length = 1842
Score = 30.2 bits (15), Expect = 8.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 851 atgcaggcatcctcc 865
|||||||||||||||
Sbjct: 680 atgcaggcatcctcc 666
>ISSpi4
Length = 1258
Score = 30.2 bits (15), Expect = 8.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 20 acgtgtgggcaggta 34
|||||||||||||||
Sbjct: 769 acgtgtgggcaggta 783
>ISAde3
Length = 1183
Score = 30.2 bits (15), Expect = 8.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 1321 gatgatctgctcctc 1335
|||||||||||||||
Sbjct: 99 gatgatctgctcctc 85
Score = 30.2 bits (15), Expect = 8.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 90 cgagggtcacgcggt 104
|||||||||||||||
Sbjct: 542 cgagggtcacgcggt 556
>ISMdi17
Length = 888
Score = 30.2 bits (15), Expect = 8.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 257 acgatcgccttcttc 271
|||||||||||||||
Sbjct: 814 acgatcgccttcttc 828
>ISRce1
Length = 1267
Score = 30.2 bits (15), Expect = 8.4
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 696 cggcgaacgcctcctcgag 714
||||||||||| |||||||
Sbjct: 761 cggcgaacgccgcctcgag 743
>ISThsp12
Length = 2004
Score = 30.2 bits (15), Expect = 8.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 683 cccgccggcaacccg 697
|||||||||||||||
Sbjct: 354 cccgccggcaacccg 368
>ISCARN43
Length = 1086
Score = 30.2 bits (15), Expect = 8.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 1581 cgccccggaaggggc 1595
|||||||||||||||
Sbjct: 905 cgccccggaaggggc 891
>ISThsp9
Length = 6215
Score = 30.2 bits (15), Expect = 8.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 1318 ctcgatgatctgctc 1332
|||||||||||||||
Sbjct: 2425 ctcgatgatctgctc 2439
Score = 30.2 bits (15), Expect = 8.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 207 gatcggacagcaggt 221
|||||||||||||||
Sbjct: 3988 gatcggacagcaggt 3974
>ISBj7_B
Length = 2865
Score = 30.2 bits (15), Expect = 8.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 406 cttgccggcggagga 420
|||||||||||||||
Sbjct: 302 cttgccggcggagga 316
>ISMno4
Length = 1385
Score = 30.2 bits (15), Expect = 8.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 197 cgggcgtccggatcg 211
|||||||||||||||
Sbjct: 705 cgggcgtccggatcg 719
>ISShes10
Length = 1113
Score = 30.2 bits (15), Expect = 8.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 1282 caactcggccttgcc 1296
|||||||||||||||
Sbjct: 98 caactcggccttgcc 112
>ISOgr3
Length = 1052
Score = 30.2 bits (15), Expect = 8.4
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 983 atctgacgttcggcgacct 1001
|||||| ||||||||||||
Sbjct: 934 atctgaggttcggcgacct 916
>ISRpa7
Length = 1196
Score = 30.2 bits (15), Expect = 8.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 686 gccggcaacccggcg 700
|||||||||||||||
Sbjct: 813 gccggcaacccggcg 799
>ISGur9
Length = 2553
Score = 30.2 bits (15), Expect = 8.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 1186 cagctccgccagcga 1200
|||||||||||||||
Sbjct: 1011 cagctccgccagcga 997
>ISBrsp4
Length = 1268
Score = 30.2 bits (15), Expect = 8.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 515 gccgcgaccggtccg 529
|||||||||||||||
Sbjct: 267 gccgcgaccggtccg 253
>ISSav2
Length = 1938
Score = 30.2 bits (15), Expect = 8.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 929 gtcaggtcgcgcagc 943
|||||||||||||||
Sbjct: 564 gtcaggtcgcgcagc 550
>ISMfl1
Length = 1457
Score = 30.2 bits (15), Expect = 8.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 1447 cgtgctcgaccatcg 1461
|||||||||||||||
Sbjct: 655 cgtgctcgaccatcg 641
>ISOcsp1
Length = 1955
Score = 30.2 bits (15), Expect = 8.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 846 gcttgatgcaggcat 860
|||||||||||||||
Sbjct: 1170 gcttgatgcaggcat 1184
>ISBcen6
Length = 1335
Score = 30.2 bits (15), Expect = 8.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 319 gtcgctgcgtccggc 333
|||||||||||||||
Sbjct: 1183 gtcgctgcgtccggc 1169
>ISBmu1
Length = 2581
Score = 30.2 bits (15), Expect = 8.4
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 898 gcgggccgcgaccagatcg 916
|||||||||||| ||||||
Sbjct: 2277 gcgggccgcgacgagatcg 2259
>IS881
Length = 3033
Score = 30.2 bits (15), Expect = 8.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 640 cagcatccgttccag 654
|||||||||||||||
Sbjct: 269 cagcatccgttccag 255
>IS883
Length = 2461
Score = 30.2 bits (15), Expect = 8.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 683 cccgccggcaacccg 697
|||||||||||||||
Sbjct: 497 cccgccggcaacccg 483
>ISMmg1
Length = 1359
Score = 30.2 bits (15), Expect = 8.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 501 cgatgacgatcgcgg 515
|||||||||||||||
Sbjct: 77 cgatgacgatcgcgg 91
>ISPsy13
Length = 1232
Score = 30.2 bits (15), Expect = 8.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 673 atcgaagccgcccgc 687
|||||||||||||||
Sbjct: 145 atcgaagccgcccgc 159
>ISBugl1
Length = 1335
Score = 30.2 bits (15), Expect = 8.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 319 gtcgctgcgtccggc 333
|||||||||||||||
Sbjct: 1184 gtcgctgcgtccggc 1170
>IS220
Length = 3257
Score = 30.2 bits (15), Expect = 8.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 113 gcttcgagttgtcgg 127
|||||||||||||||
Sbjct: 2069 gcttcgagttgtcgg 2055
>IS204
Length = 1452
Score = 30.2 bits (15), Expect = 8.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 1017 cgtcaagcacgtcgg 1031
|||||||||||||||
Sbjct: 1314 cgtcaagcacgtcgg 1328
>IS2001
Length = 1406
Score = 30.2 bits (15), Expect = 8.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 1081 cgggttcaggccgtg 1095
|||||||||||||||
Sbjct: 88 cgggttcaggccgtg 74
>IS1417
Length = 1335
Score = 30.2 bits (15), Expect = 8.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 319 gtcgctgcgtccggc 333
|||||||||||||||
Sbjct: 1184 gtcgctgcgtccggc 1170
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_48_length_1553_cov_176.711_ID_5264
(1553 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISFsp5 | IS4 | IS4 | Frankia sp. | 46 | 1e-04 |
| ISTro1 | IS1380 | Thiocapsa roseopersicina | 38 | 0.033 | |
| ISBmu1 | IS21 | Burkholderia multivorans | 38 | 0.033 | |
| ISRop2 | ISAzo13 | Rhodococcus opacus | 34 | 0.52 | |
| ISMch4 | IS110 | IS1111 | Methylobacterium chloromethanicum | 34 | 0.52 |
| ISSer1 | IS110 | Saccharopolyspora erythraea | 34 | 0.52 | |
| ISBxe1 | IS3 | IS3 | Burkholderia xenovorans | 34 | 0.52 |
| ISPpa5 | IS66 | Paracoccus pantotrophus | 34 | 0.52 | |
| IS1162 | IS21 | - | Pseudomonas fluorescens | 34 | 0.52 |
| ISMno25 | IS110 | IS1111 | Methylobacterium nodulans | 32 | 2.0 |
| ISMyma8 | IS3 | IS407 | Mycobacterium marinum | 32 | 2.0 |
| ISNagr7 | IS1595 | ISH4 | Natronobacterium gregoryi | 32 | 2.0 |
| ISNagr6 | IS1595 | ISH4 | Natronobacterium gregoryi | 32 | 2.0 |
| ISAzs29 | Tn3 | Azospirillum sp. | 32 | 2.0 | |
| ISAar43 | IS3 | IS407 | Arthrobacter arilaitensis | 32 | 2.0 |
| ISAzba8 | IS256 | Azospirillum brasilense | 32 | 2.0 | |
| ISAnsp12 | IS66 | Anaeromyxobacter sp. | 32 | 2.0 | |
| IS1663 | IS110 | Bordetella pertussis | 32 | 2.0 | |
| ISBfun1 | IS110 | IS1111 | Burkholderia fungorum | 32 | 2.0 |
| ISRm3G | IS256 | - | Rhizobium meliloti | 32 | 2.0 |
| ISRm3 | IS256 | - | Rhizobium meliloti | 32 | 2.0 |
| ISPa42 | Tn3 | Pseudomonas aeruginosa | 32 | 2.0 | |
| IS902 | IS110 | - | Mycobacterium avium | 32 | 2.0 |
| IS901 | IS110 | - | Mycobacterium avium | 32 | 2.0 |
| IS1647 | IS5 | IS427 | Streptomyces coelicolor | 32 | 2.0 |
| IS12528 | IS5 | IS1031 | Gluconobacter suboxydans | 32 | 2.0 |
| IS1141 | IS3 | IS3 | Mycobacterium intracellulare | 32 | 2.0 |
| ISSna1 | ISNCY | ISDol1 | Streptomyces natalensis | 30 | 8.1 |
| ISMdi15 | IS200/IS605 | IS1341 | Methylobacterium dichloromethanicum | 30 | 8.1 |
| ISNin1 | IS200/IS605 | IS605 | Natronolimnobius innermongolicus | 30 | 8.1 |
| ISBusp5 | ISKra4 | ISAzba1 | Burkholderia sp. | 30 | 8.1 |
| IS3506 | IS256 | Corynebacterium jeikeium | 30 | 8.1 | |
| ISHla9 | ISH3 | Halorubrum lacusprofundi | 30 | 8.1 | |
| ISAzs32 | IS110 | IS1111 | Azospirillum sp. | 30 | 8.1 |
| ISAzs23 | IS3 | IS3 | Azospirillum sp. | 30 | 8.1 |
| ISBuph1 | IS5 | IS427 | Burkholderia phytofirmans | 30 | 8.1 |
| ISRce2 | IS1182 | Rhodospirillum centenum | 30 | 8.1 | |
| ISRjo3 | ISNCY | ISDol1 | Rhodococcus jostii | 30 | 8.1 |
| ISMsm12 | IS1380 | Mycobacterium smegmatis | 30 | 8.1 | |
| ISMsm10 | IS1380 | Mycobacterium smegmatis | 30 | 8.1 | |
| ISAar6 | IS256 | Arthrobacter arilaitensis | 30 | 8.1 | |
| ISMex25 | IS6 | Methylobacterium extorquens | 30 | 8.1 | |
| ISMex12 | IS110 | Methylobacterium extorquens | 30 | 8.1 | |
| ISMex39 | IS21 | Methylobacterium extorquens | 30 | 8.1 | |
| ISMdi7 | IS21 | Methylobacterium dichloromethanicum | 30 | 8.1 | |
| ISMdi2 | ISL3 | Methylobacterium dichloromethanicum | 30 | 8.1 | |
| ISAnsp4 | IS21 | Anaeromyxobacter sp. | 30 | 8.1 | |
| ISAzo41 | IS5 | IS5 | Azoarcus sp. | 30 | 8.1 |
| ISAzo15 | IS66 | Azoarcus sp. | 30 | 8.1 | |
| ISSen2 | IS5 | IS427 | Salmonella enterica | 30 | 8.1 |
| ISAzo11 | IS5 | IS5 | Azoarcus sp. | 30 | 8.1 |
| ISCARN29 | IS1595 | ISPna2 | Metagenomic data from CARNOULES | 30 | 8.1 |
| ISCARN17 | IS21 | Metagenomic data from CARNOULES | 30 | 8.1 | |
| ISMno3 | IS66 | ISBst12 | Methylobacterium nodulans | 30 | 8.1 |
| ISDds5 | IS982 | Deinococcus deserti | 30 | 8.1 | |
| ISBlma8 | ISAs1 | Blastopirellula marina | 30 | 8.1 | |
| ISMtsp2 | IS6 | Methylobacterium sp. | 30 | 8.1 | |
| ISXau2 | IS3 | IS51 | Xanthobacter autotrophicus | 30 | 8.1 |
| ISPpr7 | IS3 | IS3 | Photobacterium profundum | 30 | 8.1 |
| ISFal2 | IS6 | Frankia alni | 30 | 8.1 | |
| ISAtu2 | IS5 | IS5 | Agrobacterium tumefaciens | 30 | 8.1 |
| ISTfu1 | IS200/IS605 | Thermobifida fusca | 30 | 8.1 | |
| ISSco3 | IS5 | IS1031 | Streptomyces coelicolor | 30 | 8.1 |
| IS468A | IS5 | IS1031 | Streptomyces coelicolor | 30 | 8.1 |
| IS220 | IS1380 | - | Mycobacterium fortuitum | 30 | 8.1 |
| IS2606 | IS256 | - | Mycobacterium ulcerans | 30 | 8.1 |
| IS1341 | IS200/IS605 | IS1341 | Thermophilic bacterium | 30 | 8.1 |
>ISFsp5
Length = 1617
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 294 cggcacgggcgtcggcgacgagctggc 320
|||||||||||||||||| ||||||||
Sbjct: 1001 cggcacgggcgtcggcgatgagctggc 975
>ISTro1
Length = 1735
Score = 38.2 bits (19), Expect = 0.033
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 181 cgtggtaggtgcgggtccg 199
|||||||||||||||||||
Sbjct: 1005 cgtggtaggtgcgggtccg 987
>ISBmu1
Length = 2581
Score = 38.2 bits (19), Expect = 0.033
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 621 ggccgacgccgcgcaggtc 639
|||||||||||||||||||
Sbjct: 593 ggccgacgccgcgcaggtc 611
>ISRop2
Length = 2171
Score = 34.2 bits (17), Expect = 0.52
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 890 tgccgggtcagctcctc 906
|||||||||||||||||
Sbjct: 443 tgccgggtcagctcctc 427
>ISMch4
Length = 1631
Score = 34.2 bits (17), Expect = 0.52
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 567 cggcgaaccgcgccacg 583
|||||||||||||||||
Sbjct: 768 cggcgaaccgcgccacg 752
>ISSer1
Length = 1447
Score = 34.2 bits (17), Expect = 0.52
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 1004 gcgtcgtgggcgtcggtcttg 1024
|||||| ||||||||||||||
Sbjct: 547 gcgtcgcgggcgtcggtcttg 527
>ISBxe1
Length = 1282
Score = 34.2 bits (17), Expect = 0.52
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 1271 accgacagcttgtggggatcg 1291
||||| |||||||||||||||
Sbjct: 1044 accgagagcttgtggggatcg 1064
>ISPpa5
Length = 2829
Score = 34.2 bits (17), Expect = 0.52
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 470 cgccggttcccggcccg 486
|||||||||||||||||
Sbjct: 501 cgccggttcccggcccg 485
>IS1162
Length = 2634
Score = 34.2 bits (17), Expect = 0.52
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 729 gctgctcgaccgcgagc 745
|||||||||||||||||
Sbjct: 1918 gctgctcgaccgcgagc 1934
>ISMno25
Length = 1518
Score = 32.2 bits (16), Expect = 2.0
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 469 ccgccggttcccggcc 484
||||||||||||||||
Sbjct: 1012 ccgccggttcccggcc 997
>ISMyma8
Length = 1247
Score = 32.2 bits (16), Expect = 2.0
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 377 ttgccctcggcgagcttgcg 396
|||||||| |||||||||||
Sbjct: 144 ttgccctcagcgagcttgcg 125
>ISNagr7
Length = 1004
Score = 32.2 bits (16), Expect = 2.0
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 432 tctggctgatcgcggc 447
||||||||||||||||
Sbjct: 592 tctggctgatcgcggc 607
>ISNagr6
Length = 1005
Score = 32.2 bits (16), Expect = 2.0
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 432 tctggctgatcgcggc 447
||||||||||||||||
Sbjct: 593 tctggctgatcgcggc 608
>ISAzs29
Length = 3897
Score = 32.2 bits (16), Expect = 2.0
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 1282 gtggggatcgaccccg 1297
||||||||||||||||
Sbjct: 1572 gtggggatcgaccccg 1587
>ISAar43
Length = 1247
Score = 32.2 bits (16), Expect = 2.0
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 1097 tcggcgagcagccgct 1112
||||||||||||||||
Sbjct: 316 tcggcgagcagccgct 301
>ISAzba8
Length = 1321
Score = 32.2 bits (16), Expect = 2.0
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 822 ccttcttcgccttccc 837
||||||||||||||||
Sbjct: 1023 ccttcttcgccttccc 1038
>ISAnsp12
Length = 2926
Score = 32.2 bits (16), Expect = 2.0
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 302 gcgtcggcgacgagct 317
||||||||||||||||
Sbjct: 1807 gcgtcggcgacgagct 1792
>IS1663
Length = 1225
Score = 32.2 bits (16), Expect = 2.0
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 680 tccttgctcagcgcct 695
||||||||||||||||
Sbjct: 646 tccttgctcagcgcct 631
>ISBfun1
Length = 1466
Score = 32.2 bits (16), Expect = 2.0
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 620 gggccgacgccgcgca 635
||||||||||||||||
Sbjct: 775 gggccgacgccgcgca 760
>ISRm3G
Length = 1298
Score = 32.2 bits (16), Expect = 2.0
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 822 ccttcttcgccttccc 837
||||||||||||||||
Sbjct: 1017 ccttcttcgccttccc 1032
>ISRm3
Length = 1298
Score = 32.2 bits (16), Expect = 2.0
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 822 ccttcttcgccttccc 837
||||||||||||||||
Sbjct: 1017 ccttcttcgccttccc 1032
>ISPa42
Length = 16941
Score = 32.2 bits (16), Expect = 2.0
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 68 gtcaaggtcgttcgtc 83
||||||||||||||||
Sbjct: 1460 gtcaaggtcgttcgtc 1475
>IS902
Length = 1470
Score = 32.2 bits (16), Expect = 2.0
Identities = 22/24 (91%)
Strand = Plus / Minus
Query: 1002 gcgcgtcgtgggcgtcggtcttgc 1025
||||||| | ||||||||||||||
Sbjct: 544 gcgcgtctttggcgtcggtcttgc 521
>IS901
Length = 1472
Score = 32.2 bits (16), Expect = 2.0
Identities = 22/24 (91%)
Strand = Plus / Minus
Query: 1002 gcgcgtcgtgggcgtcggtcttgc 1025
||||||| | ||||||||||||||
Sbjct: 545 gcgcgtctttggcgtcggtcttgc 522
>IS1647
Length = 878
Score = 32.2 bits (16), Expect = 2.0
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 906 cccggcggtcgacgag 921
||||||||||||||||
Sbjct: 477 cccggcggtcgacgag 462
>IS12528
Length = 905
Score = 32.2 bits (16), Expect = 2.0
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 445 ggcgatgtggatcatg 460
||||||||||||||||
Sbjct: 850 ggcgatgtggatcatg 835
>IS1141
Length = 1588
Score = 32.2 bits (16), Expect = 2.0
Identities = 22/24 (91%)
Strand = Plus / Plus
Query: 491 agccggtgtcggtcctgctcgccg 514
|||||||| || ||||||||||||
Sbjct: 1153 agccggtggcgttcctgctcgccg 1176
>ISSna1
Length = 1560
Score = 30.2 bits (15), Expect = 8.1
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 156 tcgcacgggccacggcggc 174
|||| ||||||||||||||
Sbjct: 793 tcgcccgggccacggcggc 775
>ISMdi15
Length = 1344
Score = 30.2 bits (15), Expect = 8.1
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 730 ctgctcgaccgcgag 744
|||||||||||||||
Sbjct: 766 ctgctcgaccgcgag 752
>ISNin1
Length = 1902
Score = 30.2 bits (15), Expect = 8.1
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 1357 gcgaggcgggcattg 1371
|||||||||||||||
Sbjct: 639 gcgaggcgggcattg 625
>ISBusp5
Length = 1533
Score = 30.2 bits (15), Expect = 8.1
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 760 gccggccaggtcccg 774
|||||||||||||||
Sbjct: 931 gccggccaggtcccg 917
>IS3506
Length = 1423
Score = 30.2 bits (15), Expect = 8.1
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 1060 cgacaacttcgcggg 1074
|||||||||||||||
Sbjct: 1017 cgacaacttcgcggg 1003
>ISHla9
Length = 1436
Score = 30.2 bits (15), Expect = 8.1
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 430 gatctggctgatcgc 444
|||||||||||||||
Sbjct: 894 gatctggctgatcgc 908
>ISAzs32
Length = 1601
Score = 30.2 bits (15), Expect = 8.1
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 307 ggcgacgagctggcg 321
|||||||||||||||
Sbjct: 911 ggcgacgagctggcg 925
>ISAzs23
Length = 1596
Score = 30.2 bits (15), Expect = 8.1
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 470 cgccggttcccggcc 484
|||||||||||||||
Sbjct: 674 cgccggttcccggcc 660
>ISBuph1
Length = 912
Score = 30.2 bits (15), Expect = 8.1
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 387 cgagcttgcgccggt 401
|||||||||||||||
Sbjct: 472 cgagcttgcgccggt 458
>ISRce2
Length = 1528
Score = 30.2 bits (15), Expect = 8.1
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 367 gaggggcttcttgcc 381
|||||||||||||||
Sbjct: 626 gaggggcttcttgcc 612
>ISRjo3
Length = 1638
Score = 30.2 bits (15), Expect = 8.1
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 792 ggattgccttggcctgcaa 810
|||||||||||||| ||||
Sbjct: 593 ggattgccttggccagcaa 575
Score = 30.2 bits (15), Expect = 8.1
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 1251 catcgacgacctcga 1265
|||||||||||||||
Sbjct: 931 catcgacgacctcga 945
>ISMsm12
Length = 3256
Score = 30.2 bits (15), Expect = 8.1
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 1251 catcgacgacctcga 1265
|||||||||||||||
Sbjct: 1944 catcgacgacctcga 1958
>ISMsm10
Length = 1661
Score = 30.2 bits (15), Expect = 8.1
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 1251 catcgacgacctcga 1265
|||||||||||||||
Sbjct: 348 catcgacgacctcga 362
>ISAar6
Length = 1519
Score = 30.2 bits (15), Expect = 8.1
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 1309 cgccatgtcgccacc 1323
|||||||||||||||
Sbjct: 1105 cgccatgtcgccacc 1091
>ISMex25
Length = 887
Score = 30.2 bits (15), Expect = 8.1
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 201 gaagtggctgatccg 215
|||||||||||||||
Sbjct: 501 gaagtggctgatccg 487
>ISMex12
Length = 1418
Score = 30.2 bits (15), Expect = 8.1
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 679 ctccttgctcagcgc 693
|||||||||||||||
Sbjct: 680 ctccttgctcagcgc 666
>ISMex39
Length = 2456
Score = 30.2 bits (15), Expect = 8.1
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 1255 gacgacctcgatcgt 1269
|||||||||||||||
Sbjct: 2156 gacgacctcgatcgt 2170
>ISMdi7
Length = 2568
Score = 30.2 bits (15), Expect = 8.1
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 237 cgtcgaccgcgctgg 251
|||||||||||||||
Sbjct: 1054 cgtcgaccgcgctgg 1068
>ISMdi2
Length = 1689
Score = 30.2 bits (15), Expect = 8.1
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 577 cgccacgtcaccgac 591
|||||||||||||||
Sbjct: 283 cgccacgtcaccgac 269
>ISAnsp4
Length = 2195
Score = 30.2 bits (15), Expect = 8.1
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 603 tgcgcgcggcgacca 617
|||||||||||||||
Sbjct: 717 tgcgcgcggcgacca 703
>ISAzo41
Length = 1158
Score = 30.2 bits (15), Expect = 8.1
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 727 cagctgctcgaccgc 741
|||||||||||||||
Sbjct: 334 cagctgctcgaccgc 348
>ISAzo15
Length = 2441
Score = 30.2 bits (15), Expect = 8.1
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 732 gctcgaccgcgagcc 746
|||||||||||||||
Sbjct: 438 gctcgaccgcgagcc 424
Score = 30.2 bits (15), Expect = 8.1
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 926 cgcagcgcctcgagc 940
|||||||||||||||
Sbjct: 1114 cgcagcgcctcgagc 1100
>ISSen2
Length = 846
Score = 30.2 bits (15), Expect = 8.1
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 1108 ccgctgcgccagcgg 1122
|||||||||||||||
Sbjct: 378 ccgctgcgccagcgg 392
>ISAzo11
Length = 1280
Score = 30.2 bits (15), Expect = 8.1
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 1358 cgaggcgggcattgc 1372
|||||||||||||||
Sbjct: 601 cgaggcgggcattgc 587
>ISCARN29
Length = 1044
Score = 30.2 bits (15), Expect = 8.1
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 688 cagcgccttggtctt 702
|||||||||||||||
Sbjct: 179 cagcgccttggtctt 165
>ISCARN17
Length = 2539
Score = 30.2 bits (15), Expect = 8.1
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 410 cggccctcgctggcg 424
|||||||||||||||
Sbjct: 1930 cggccctcgctggcg 1944
>ISMno3
Length = 1364
Score = 30.2 bits (15), Expect = 8.1
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 799 cttggcctgcaaggc 813
|||||||||||||||
Sbjct: 1096 cttggcctgcaaggc 1082
>ISDds5
Length = 845
Score = 30.2 bits (15), Expect = 8.1
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 116 cgtcgtcgcgtcatc 130
|||||||||||||||
Sbjct: 98 cgtcgtcgcgtcatc 112
>ISBlma8
Length = 1263
Score = 30.2 bits (15), Expect = 8.1
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 666 cgatcgccttcagct 680
|||||||||||||||
Sbjct: 908 cgatcgccttcagct 894
>ISMtsp2
Length = 894
Score = 30.2 bits (15), Expect = 8.1
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 948 cgtaggacagcaccc 962
|||||||||||||||
Sbjct: 292 cgtaggacagcaccc 278
>ISXau2
Length = 1238
Score = 30.2 bits (15), Expect = 8.1
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 300 gggcgtcggcgacgagctg 318
|||| ||||||||||||||
Sbjct: 867 gggcatcggcgacgagctg 849
>ISPpr7
Length = 1665
Score = 30.2 bits (15), Expect = 8.1
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 127 catctggggagccga 141
|||||||||||||||
Sbjct: 547 catctggggagccga 561
>ISFal2
Length = 826
Score = 30.2 bits (15), Expect = 8.1
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 1203 cggccttgtcggtgg 1217
|||||||||||||||
Sbjct: 499 cggccttgtcggtgg 485
>ISAtu2
Length = 1353
Score = 30.2 bits (15), Expect = 8.1
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 1414 acggcccccggcggg 1428
|||||||||||||||
Sbjct: 27 acggcccccggcggg 13
>ISTfu1
Length = 1743
Score = 30.2 bits (15), Expect = 8.1
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 1315 gtcgccacctcgtcc 1329
|||||||||||||||
Sbjct: 1059 gtcgccacctcgtcc 1073
>ISSco3
Length = 1101
Score = 30.2 bits (15), Expect = 8.1
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 446 gcgatgtggatcatg 460
|||||||||||||||
Sbjct: 997 gcgatgtggatcatg 983
>IS468A
Length = 1097
Score = 30.2 bits (15), Expect = 8.1
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 446 gcgatgtggatcatg 460
|||||||||||||||
Sbjct: 995 gcgatgtggatcatg 981
>IS220
Length = 3257
Score = 30.2 bits (15), Expect = 8.1
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 1251 catcgacgacctcga 1265
|||||||||||||||
Sbjct: 1944 catcgacgacctcga 1958
>IS2606
Length = 1404
Score = 30.2 bits (15), Expect = 8.1
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 1510 tctggccggacaccg 1524
|||||||||||||||
Sbjct: 724 tctggccggacaccg 738
>IS1341
Length = 1353
Score = 30.2 bits (15), Expect = 8.1
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 1245 cgtggtcatcgacgacctc 1263
|||||||||||| ||||||
Sbjct: 1025 cgtggtcatcgaagacctc 1043
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_49_length_1463_cov_82.2482_ID_5266
(1463 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISTesp2 | ISL3 | Terrabacter sp. | 92 | 2e-18 | |
| IS1557 | ISL3 | Mycobacterium tuberculosis | 42 | 0.002 | |
| IS861 | IS3 | IS150 | Streptococcus agalactiae | 38 | 0.031 |
| ISAar34 | ISL3 | Arthrobacter arilaitensis | 36 | 0.12 | |
| ISPso1 | IS256 | Paracoccus solventivorans | 34 | 0.49 | |
| ISNpe3 | IS630 | Natrinema pellirubrum | 32 | 1.9 | |
| ISRer3 | IS256 | Rhodococcus erythropolis | 32 | 1.9 | |
| ISMgi3 | IS1182 | Mycobacterium gilvum | 32 | 1.9 | |
| ISMno18 | IS5 | IS427 | Methylobacterium nodulans | 32 | 1.9 |
| ISCARN77 | ISL3 | Metagenomic data from CARNOULES | 32 | 1.9 | |
| ISPosp2 | IS701 | Polaromonas sp. | 32 | 1.9 | |
| ISMt1 | IS5 | IS427 | Mycobacterium tuberculosis | 32 | 1.9 |
| ISH50 | IS1595 | ISH4 | Halobacterium salinarum | 32 | 1.9 |
| IS1474 | IS21 | - | Pseudomonas alcaligenes | 32 | 1.9 |
| IS1166 | IS256 | - | Rhodococcus sp. | 32 | 1.9 |
| TnXo19 | Tn3 | Xanthomonas oryzae | 30 | 7.6 | |
| ISHez2 | IS200/IS605 | IS1341 | Halorubrum ezzemoulense | 30 | 7.6 |
| ISNti1 | IS200/IS605 | IS1341 | Natronorubrum tibetense | 30 | 7.6 |
| ISHhu3 | IS200/IS605 | Halobacterium hubeiense | 30 | 7.6 | |
| ISTli1 | IS982 | Thermococcus litoralis | 30 | 7.6 | |
| ISCod2 | IS256 | IS1249 | Corynebacterium diphtheriae | 30 | 7.6 |
| ISHwa20 | IS5 | Haloquadratum walsbyi | 30 | 7.6 | |
| ISMtsp18 | IS3 | IS2 | Methylobacterium sp. | 30 | 7.6 |
| ISMch6 | IS110 | Methylobacterium chloromethanicum | 30 | 7.6 | |
| ISPfr13 | IS3 | IS51 | Propionibacterium freudenreichii | 30 | 7.6 |
| ISMsm11 | IS1380 | Mycobacterium smegmatis | 30 | 7.6 | |
| ISTha2 | ISAs1 | Thauera sp. | 30 | 7.6 | |
| ISThsp12 | IS1634 | Thiomonas sp. | 30 | 7.6 | |
| ISCARN104 | IS66 | Metagenomic data from CARNOULES | 30 | 7.6 | |
| ISAzo40 | IS1380 | Azoarcus sp. | 30 | 7.6 | |
| ISCARN11 | IS1595 | ISSod11 | Metagenomic data from CARNOULES | 30 | 7.6 |
| ISDge10 | IS200/IS605 | Deinococcus geothermalis | 30 | 7.6 | |
| ISSam1 | IS110 | Streptomyces ambofaciens | 30 | 7.6 | |
| ISOgr2 | IS3 | IS2 | Oceanicola granulosus | 30 | 7.6 |
| ISGpr3 | IS3 | IS51 | Marine gamma proteobacterium | 30 | 7.6 |
| ISMxa1 | IS3 | IS3 | Myxococcus xanthus | 30 | 7.6 |
| ISXo14 | IS4 | IS10 | Xanthomonas oryzae | 30 | 7.6 |
| ISXac1 | IS4 | IS10 | Xanthomonas axonopodis | 30 | 7.6 |
| ISPfu3 | IS982 | Pyrococcus furiosus | 30 | 7.6 | |
| ISPst9 | ISL3 | Pseudomonas stutzeri | 30 | 7.6 | |
| ISPpu12 | ISL3 | Pseudomonas putida | 30 | 7.6 | |
| ISGsu6 | IS21 | Geobacter sulfurreducens | 30 | 7.6 | |
| ISBlo8 | IS256 | Bifidobacterium longum | 30 | 7.6 | |
| ISXc4 | Tn3 | - | Xanthomonas campestris | 30 | 7.6 |
| ISXaca1 | IS4 | IS10 | Xanthomonas campestris | 30 | 7.6 |
| ISRso5 | IS630 | - | Ralstonia solanacearum | 30 | 7.6 |
| ISPst2 | ISL3 | - | Pseudomonas stutzeri | 30 | 7.6 |
| IS219 | IS1380 | - | Mycobacterium fortuitum | 30 | 7.6 |
| IS200C | IS200/IS605 | IS200 | Escherichia coli | 30 | 7.6 |
| IS1396 | ISL3 | - | Serratia marcescens | 30 | 7.6 |
>ISTesp2
Length = 1397
Score = 91.7 bits (46), Expect = 2e-18
Identities = 67/74 (90%)
Strand = Plus / Plus
Query: 4 gccatgctcagcctcggcggtcaccgccccgtcctgcccggccggaactgacccacggat 63
|||||||||| ||||||||| ||||| |||||||| || |||||||| ||||||||||||
Sbjct: 1324 gccatgctcaacctcggcggccaccgacccgtcctcccaggccggaaatgacccacggat 1383
Query: 64 cagtcagtagagcc 77
||||||| ||||||
Sbjct: 1384 cagtcaggagagcc 1397
>IS1557
Length = 1509
Score = 42.1 bits (21), Expect = 0.002
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 54 acccacggatcagtcagtagagccc 78
|||||| ||||||||||||||||||
Sbjct: 1462 acccacagatcagtcagtagagccc 1486
>IS861
Length = 1442
Score = 38.2 bits (19), Expect = 0.031
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 541 gccagccttggtcgctgtg 559
|||||||||||||||||||
Sbjct: 1135 gccagccttggtcgctgtg 1117
>ISAar34
Length = 1438
Score = 36.2 bits (18), Expect = 0.12
Identities = 24/26 (92%)
Strand = Plus / Plus
Query: 52 tgacccacggatcagtcagtagagcc 77
||||||||||| |||||||||||||
Sbjct: 1413 tgacccacggaagagtcagtagagcc 1438
Score = 32.2 bits (16), Expect = 1.9
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 1 ctggccatgctcagcctcgg 20
||||| ||||||||||||||
Sbjct: 1362 ctggcgatgctcagcctcgg 1381
Score = 30.2 bits (15), Expect = 7.6
Identities = 21/23 (91%)
Strand = Plus / Minus
Query: 55 cccacggatcagtcagtagagcc 77
||||||||| ||||||||||||
Sbjct: 23 cccacggatatgtcagtagagcc 1
>ISPso1
Length = 1400
Score = 34.2 bits (17), Expect = 0.49
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 205 cgacgacgtgctggcgt 221
|||||||||||||||||
Sbjct: 1073 cgacgacgtgctggcgt 1089
>ISNpe3
Length = 1055
Score = 32.2 bits (16), Expect = 1.9
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 1149 cttcatcggcttcggc 1164
||||||||||||||||
Sbjct: 508 cttcatcggcttcggc 493
>ISRer3
Length = 1471
Score = 32.2 bits (16), Expect = 1.9
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 424 ccgtgctcatcgagat 439
||||||||||||||||
Sbjct: 303 ccgtgctcatcgagat 288
>ISMgi3
Length = 1770
Score = 32.2 bits (16), Expect = 1.9
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 961 agccatcccttcggcaggca 980
||||||| ||||||||||||
Sbjct: 255 agccatcacttcggcaggca 236
>ISMno18
Length = 864
Score = 32.2 bits (16), Expect = 1.9
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 166 cgatcacggcgcacggcagc 185
||||||||||||| ||||||
Sbjct: 628 cgatcacggcgcaaggcagc 647
>ISCARN77
Length = 1275
Score = 32.2 bits (16), Expect = 1.9
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 713 tcgtctgcctcgttgc 728
||||||||||||||||
Sbjct: 1039 tcgtctgcctcgttgc 1024
>ISPosp2
Length = 1484
Score = 32.2 bits (16), Expect = 1.9
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 1307 gcccttgttgccttcg 1322
||||||||||||||||
Sbjct: 1434 gcccttgttgccttcg 1449
>ISMt1
Length = 969
Score = 32.2 bits (16), Expect = 1.9
Identities = 28/32 (87%)
Strand = Plus / Plus
Query: 1430 tttctgacgagttctgggcggtcgtggagccg 1461
|||| |||||||||||||| || || ||||||
Sbjct: 66 tttcggacgagttctgggccgtggtcgagccg 97
>ISH50
Length = 996
Score = 32.2 bits (16), Expect = 1.9
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 636 cgtccgccgtggacag 651
||||||||||||||||
Sbjct: 548 cgtccgccgtggacag 533
>IS1474
Length = 2633
Score = 32.2 bits (16), Expect = 1.9
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 1271 ggcttccagccgtgca 1286
||||||||||||||||
Sbjct: 1612 ggcttccagccgtgca 1597
>IS1166
Length = 1469
Score = 32.2 bits (16), Expect = 1.9
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 424 ccgtgctcatcgagat 439
||||||||||||||||
Sbjct: 303 ccgtgctcatcgagat 288
>TnXo19
Length = 18767
Score = 30.2 bits (15), Expect = 7.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 387 cgcgggccagtggcg 401
|||||||||||||||
Sbjct: 13259 cgcgggccagtggcg 13245
>ISHez2
Length = 1621
Score = 30.2 bits (15), Expect = 7.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 713 tcgtctgcctcgttg 727
|||||||||||||||
Sbjct: 501 tcgtctgcctcgttg 487
>ISNti1
Length = 1474
Score = 30.2 bits (15), Expect = 7.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 360 ctccccgtgtcaatg 374
|||||||||||||||
Sbjct: 153 ctccccgtgtcaatg 139
>ISHhu3
Length = 1686
Score = 30.2 bits (15), Expect = 7.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 205 cgacgacgtgctggc 219
|||||||||||||||
Sbjct: 967 cgacgacgtgctggc 981
>ISTli1
Length = 905
Score = 30.2 bits (15), Expect = 7.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 812 aggtcgtagaggctg 826
|||||||||||||||
Sbjct: 173 aggtcgtagaggctg 159
>ISCod2
Length = 1407
Score = 30.2 bits (15), Expect = 7.6
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 482 ttggtggtggatgcaccgc 500
||||||||||| |||||||
Sbjct: 284 ttggtggtggaagcaccgc 266
>ISHwa20
Length = 1075
Score = 30.2 bits (15), Expect = 7.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 202 ggtcgacgacgtgct 216
|||||||||||||||
Sbjct: 389 ggtcgacgacgtgct 375
>ISMtsp18
Length = 1341
Score = 30.2 bits (15), Expect = 7.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 239 tgccgcctgtccggt 253
|||||||||||||||
Sbjct: 34 tgccgcctgtccggt 20
>ISMch6
Length = 1379
Score = 30.2 bits (15), Expect = 7.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 772 gcgcggcgtcacggt 786
|||||||||||||||
Sbjct: 655 gcgcggcgtcacggt 641
>ISPfr13
Length = 1383
Score = 30.2 bits (15), Expect = 7.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 452 gccttgggatccggc 466
|||||||||||||||
Sbjct: 1035 gccttgggatccggc 1021
>ISMsm11
Length = 1658
Score = 30.2 bits (15), Expect = 7.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 11 tcagcctcggcggtc 25
|||||||||||||||
Sbjct: 1174 tcagcctcggcggtc 1160
>ISTha2
Length = 1268
Score = 30.2 bits (15), Expect = 7.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 821 aggctgctgatgtag 835
|||||||||||||||
Sbjct: 984 aggctgctgatgtag 970
>ISThsp12
Length = 2004
Score = 30.2 bits (15), Expect = 7.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 740 gcggtctgcaccagc 754
|||||||||||||||
Sbjct: 859 gcggtctgcaccagc 845
>ISCARN104
Length = 2483
Score = 30.2 bits (15), Expect = 7.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 1426 caggtttctgacgag 1440
|||||||||||||||
Sbjct: 124 caggtttctgacgag 138
>ISAzo40
Length = 1694
Score = 30.2 bits (15), Expect = 7.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 165 ccgatcacggcgcac 179
|||||||||||||||
Sbjct: 454 ccgatcacggcgcac 468
>ISCARN11
Length = 1133
Score = 30.2 bits (15), Expect = 7.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 104 caacaccttgccttc 118
|||||||||||||||
Sbjct: 556 caacaccttgccttc 542
>ISDge10
Length = 1757
Score = 30.2 bits (15), Expect = 7.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 1251 gacgtggagcgggcc 1265
|||||||||||||||
Sbjct: 800 gacgtggagcgggcc 814
>ISSam1
Length = 1489
Score = 30.2 bits (15), Expect = 7.6
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 880 gacgcccaccccctcgatg 898
|||||||||||| ||||||
Sbjct: 290 gacgcccaccccgtcgatg 272
>ISOgr2
Length = 1299
Score = 30.2 bits (15), Expect = 7.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 692 gccgcggcggcgcta 706
|||||||||||||||
Sbjct: 515 gccgcggcggcgcta 529
>ISGpr3
Length = 1230
Score = 30.2 bits (15), Expect = 7.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 545 gccttggtcgctgtg 559
|||||||||||||||
Sbjct: 923 gccttggtcgctgtg 909
>ISMxa1
Length = 1292
Score = 30.2 bits (15), Expect = 7.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 1043 cagcgcggtgcttct 1057
|||||||||||||||
Sbjct: 1242 cagcgcggtgcttct 1228
>ISXo14
Length = 1352
Score = 30.2 bits (15), Expect = 7.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 670 cgcggcgaccagccg 684
|||||||||||||||
Sbjct: 376 cgcggcgaccagccg 390
>ISXac1
Length = 1350
Score = 30.2 bits (15), Expect = 7.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 670 cgcggcgaccagccg 684
|||||||||||||||
Sbjct: 375 cgcggcgaccagccg 389
>ISPfu3
Length = 933
Score = 30.2 bits (15), Expect = 7.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 812 aggtcgtagaggctg 826
|||||||||||||||
Sbjct: 174 aggtcgtagaggctg 160
>ISPst9
Length = 2472
Score = 30.2 bits (15), Expect = 7.6
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 472 cttcttgtgcttggtggtg 490
|||||||||||| ||||||
Sbjct: 2306 cttcttgtgcttcgtggtg 2288
>ISPpu12
Length = 3372
Score = 30.2 bits (15), Expect = 7.6
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 472 cttcttgtgcttggtggtg 490
|||||||||||| ||||||
Sbjct: 3206 cttcttgtgcttcgtggtg 3188
>ISGsu6
Length = 1975
Score = 30.2 bits (15), Expect = 7.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 1113 gccctgcttcttgag 1127
|||||||||||||||
Sbjct: 137 gccctgcttcttgag 123
>ISBlo8
Length = 1408
Score = 30.2 bits (15), Expect = 7.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 689 gccgccgcggcggcg 703
|||||||||||||||
Sbjct: 1020 gccgccgcggcggcg 1006
Score = 30.2 bits (15), Expect = 7.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 689 gccgccgcggcggcg 703
|||||||||||||||
Sbjct: 1007 gccgccgcggcggcg 1021
>ISXc4
Length = 6938
Score = 30.2 bits (15), Expect = 7.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 670 cgcggcgaccagccg 684
|||||||||||||||
Sbjct: 5350 cgcggcgaccagccg 5364
>ISXaca1
Length = 1350
Score = 30.2 bits (15), Expect = 7.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 670 cgcggcgaccagccg 684
|||||||||||||||
Sbjct: 375 cgcggcgaccagccg 389
>ISRso5
Length = 1159
Score = 30.2 bits (15), Expect = 7.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 753 gctcggcgatctcac 767
|||||||||||||||
Sbjct: 234 gctcggcgatctcac 220
>ISPst2
Length = 2984
Score = 30.2 bits (15), Expect = 7.6
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 472 cttcttgtgcttggtggtg 490
|||||||||||| ||||||
Sbjct: 2818 cttcttgtgcttcgtggtg 2800
>IS219
Length = 1654
Score = 30.2 bits (15), Expect = 7.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 11 tcagcctcggcggtc 25
|||||||||||||||
Sbjct: 1172 tcagcctcggcggtc 1158
>IS200C
Length = 709
Score = 30.2 bits (15), Expect = 7.6
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 1332 tacgctcattttggccggg 1350
|||||||||||||| ||||
Sbjct: 363 tacgctcattttgggcggg 345
>IS1396
Length = 1771
Score = 30.2 bits (15), Expect = 7.6
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 472 cttcttgtgcttggtggtg 490
|||||||||||| ||||||
Sbjct: 1159 cttcttgtgcttcgtggtg 1141
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_50_length_1399_cov_297.24_ID_5268
(1399 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISTesp2 | ISL3 | Terrabacter sp. | 202 | 9e-52 | |
| IS1557 | ISL3 | Mycobacterium tuberculosis | 76 | 1e-13 | |
| ISAar34 | ISL3 | Arthrobacter arilaitensis | 44 | 5e-04 | |
| ISIde1 | ISL3 | Ideonella dechloratans | 38 | 0.030 | |
| ISHam1 | IS630 | Haloarcula amylolytica | 34 | 0.47 | |
| ISStro2 | IS5 | ISL2 | Streptosporangium roseum | 34 | 0.47 |
| ISHwa7 | IS630 | Haloquadratum walsbyi | 34 | 0.47 | |
| ISMpo10 | Tn3 | Methylobacterium populi | 34 | 0.47 | |
| ISStpr1 | IS481 | Streptomyces pristinaespiralis | 34 | 0.47 | |
| ISCc2 | IS110 | Caulobacter crescentus | 34 | 0.47 | |
| ISHas1 | IS200/IS605 | IS605 | Halonotius sp. | 32 | 1.8 |
| TnAs2 | Tn3 | Aeromonas salmonicida | 32 | 1.8 | |
| ISNpe13 | IS630 | Natrinema pellirubrum | 32 | 1.8 | |
| ISRfsp2 | IS110 | Roseiflexus sp. | 32 | 1.8 | |
| ISVsp3 | IS66 | Verrucomicrobium spinosum | 32 | 1.8 | |
| ISAzo2 | IS1182 | Azoarcus sp. | 32 | 1.8 | |
| ISAde1 | IS66 | Anaeromyxobacter dehalogenans | 32 | 1.8 | |
| ISCARN40 | IS256 | Metagenomic data from CARNOULES | 32 | 1.8 | |
| ISGdi15 | IS110 | IS1111 | Gluconacetobacter diazotrophicus | 32 | 1.8 |
| ISAnsp3 | IS66 | Anaeromyxobacter sp. | 32 | 1.8 | |
| ISAli12B | IS5 | IS427 | Azospirillum lipoferum | 32 | 1.8 |
| ISAli12A | IS5 | IS427 | Azospirillum lipoferum | 32 | 1.8 |
| ISAeh1 | IS66 | Alkalilimnicola ehrlichei | 32 | 1.8 | |
| ISXax1 | IS256 | Xanthomonas axonopodis | 32 | 1.8 | |
| IS427 | IS5 | IS427 | Agrobacterium tumefaciens | 32 | 1.8 |
| ISMipa1 | ISNCY | ISDol1 | Microthrix parvicella | 30 | 7.3 |
| TnAs3 | Tn3 | Aeromonas salmonicida | 30 | 7.3 | |
| ISHalo1 | IS200/IS605 | IS1341 | Haloferax larsenii | 30 | 7.3 |
| ISRsp12 | Tn3 | Rhizhobium sp. | 30 | 7.3 | |
| ISMno16 | IS110 | IS1111 | Methylobacterium nodulans | 30 | 7.3 |
| ISSoc12 | IS200/IS605 | IS1341 | Synechococcus sp | 30 | 7.3 |
| TnAs1 | Tn3 | Aeromonas salmonicida | 30 | 7.3 | |
| ISPko3 | IS5 | IS903 | Paracoccus kondratievae | 30 | 7.3 |
| ISHoc2 | ISKra4 | ISKra4 | Haliangium ochraceum | 30 | 7.3 |
| ISSlgl1 | IS256 | IS1249 | Slackia heliotrinireducens | 30 | 7.3 |
| ISMlu11 | IS256 | Micrococcus luteus | 30 | 7.3 | |
| ISHvo5 | IS1595 | ISH4 | Haloferax volcanii | 30 | 7.3 |
| ISAzs33 | IS3 | IS150 | Azospirillum sp. | 30 | 7.3 |
| ISNph17 | IS200/IS605 | IS1341 | Natronomonas pharaonis | 30 | 7.3 |
| ISXac4 | IS3 | IS407 | Xanthomonas axonopodis | 30 | 7.3 |
| ISHwa6 | IS1595 | ISH4 | Haloquadratum walsbyi | 30 | 7.3 |
| ISCte5 | IS5 | Comamonas testosteroni | 30 | 7.3 | |
| ISMno32 | IS1182 | Methylobacterium nodulans | 30 | 7.3 | |
| ISMpo7 | IS5 | IS427 | Methylobacterium populi | 30 | 7.3 |
| ISPam4 | IS5 | IS427 | Paracoccus aminophilus | 30 | 7.3 |
| ISPfr18 | ISL3 | Propionibacterium freudenreichii | 30 | 7.3 | |
| ISArsp6 | Tn3 | Arthrobacter sp. | 30 | 7.3 | |
| ISAau5 | ISNCY | Arthrobacter aurescens | 30 | 7.3 | |
| ISAar42 | ISL3 | Arthrobacter arilaitensis | 30 | 7.3 | |
| ISMsm11 | IS1380 | Mycobacterium smegmatis | 30 | 7.3 | |
| ISAar20 | ISL3 | Arthrobacter arilaitensis | 30 | 7.3 | |
| ISSfu1 | IS1380 | Syntrophobacter fumaroxidans | 30 | 7.3 | |
| ISAde5 | IS256 | Anaeromyxobacter dehalogenans | 30 | 7.3 | |
| ISMex16 | IS3 | IS150 | Methylobacterium extorquens | 30 | 7.3 |
| ISCARN82 | IS5 | IS1031 | Metagenomic data from CARNOULES | 30 | 7.3 |
| ISCARN78 | IS21 | Metagenomic data from CARNOULES | 30 | 7.3 | |
| ISCARN58 | IS21 | Metagenomic data from CARNOULES | 30 | 7.3 | |
| ISCARN12 | IS200/IS605 | IS1341 | Metagenomic data from CARNOULES | 30 | 7.3 |
| ISStau4 | IS66 | ISBst12 | Stigmatella aurantiaca | 30 | 7.3 |
| ISBlma9 | IS66 | Blastopirellula marina | 30 | 7.3 | |
| ISXoo13 | ISL3 | Xanthomonas oryzae | 30 | 7.3 | |
| ISHne3 | IS110 | Hyphomonas neptunium | 30 | 7.3 | |
| ISSgr1 | IS110 | IS1111 | Streptomyces griseus | 30 | 7.3 |
| ISRhsp3 | IS481 | Rhodobacter sphaeroides | 30 | 7.3 | |
| ISGbe2 | IS3 | IS2 | Granulibacter bethesdensis | 30 | 7.3 |
| ISSst1 | IS3 | IS407 | Sagittula stellata | 30 | 7.3 |
| ISRhosp3 | IS701 | Rhodococcus sp. | 30 | 7.3 | |
| ISHma1 | IS4 | ISH8 | Haloarcula marismortui | 30 | 7.3 |
| ISFsp3 | IS21 | Frankia sp. | 30 | 7.3 | |
| ISLxx1 | IS21 | Leifsonia xyli | 30 | 7.3 | |
| ISXcd1 | IS3 | IS407 | Xanthomonas axonopodis | 30 | 7.3 |
| ISBli3 | ISL3 | - | Brevibacterium linens | 30 | 7.3 |
| IS987 | IS3 | IS51 | Mycobacterium bovis | 30 | 7.3 |
| IS986 | IS3 | IS51 | Mycobacterium tuberculosis | 30 | 7.3 |
| IS6110 | IS3 | IS51 | Mycobacterium tuberculosis | 30 | 7.3 |
| IS219 | IS1380 | - | Mycobacterium fortuitum | 30 | 7.3 |
| IS204 | ISL3 | - | Nocardia asteroides | 30 | 7.3 |
| IS1248B | IS5 | IS427 | Paracoccus denitrificans | 30 | 7.3 |
| IS1248A | IS5 | IS427 | Paracoccus denitrificans | 30 | 7.3 |
| IS1141 | IS3 | IS3 | Mycobacterium intracellulare | 30 | 7.3 |
>ISTesp2
Length = 1397
Score = 202 bits (102), Expect = 9e-52
Identities = 426/534 (79%)
Strand = Plus / Minus
Query: 307 agctggaagacgagccgcaggccctccttcagcaggtatccgcggtagagccgcgggtcg 366
||||||||||| || ||||| || ||||| |||||||| | |||| || |||||||||
Sbjct: 1091 agctggaagaccaggcgcagtccttccttgagcaggtaggcccggtgcaggcgcgggtcg 1032
Query: 367 gtcctggccacccacgcgagcttggcctgctgcttctcggtcagattgcccgggttcttc 426
||| |||| ||||| |||||||||||||||||| ||| || || | |||||||||
Sbjct: 1031 gtcttggcgacccaggcgagcttggcctgctgccgggtggtgaggttctcggggttcttc 972
Query: 427 cacaacgcgtaccgggcccccttgaggtccttcgcgtggccgctggcccggcccgcccgg 486
|||| |||||||||||| |||||| |||| ||||| ||||||||||| || ||||||
Sbjct: 971 cacagcgcgtaccgggcgtgcttgagcgccttggcgtgcccgctggcccgcccggcccgg 912
Query: 487 cgccgggtgaccgcgccacgcgcctggttccacgcgtcccggcgcacctcgtcgagcgcg 546
||| | ||| ||||| || || | ||||||||| | || || |||||||| || |||
Sbjct: 911 cgctgccggacggcgccgcgggcttcgttccacgcctggcgacggacctcgtccagggcg 852
Query: 547 tcggtggcccaggagacgacatggaacgggtcagcgcagcggaccgcctgcgggcaccgc 606
||||||||||| ||||| |||||||| || |||||||| ||||| | ||||||||||
Sbjct: 851 tcggtggcccacttgacgatgtggaacggatcggcgcagcgcaccgcgttcgggcaccgc 792
Query: 607 tgggtgacgaccttggcgatccagtccgcgccgtccgcggacacgtgcgtgactgcggcg 666
|||| ||| || ||||||||||||||| ||||| ||| ||||| |||| ||||||
Sbjct: 791 tgggcgaccacggcggcgatccagtccgccccgtcggcgctgacgtgggtgatcgcggcg 732
Query: 667 caacgctgctcaccgagggcgtcgaagaacgcgtgcagggtggccttgtcccgcccgggc 726
|| || | |||||||| ||||||||| |||||||| ||||||||| || ||
Sbjct: 731 caccggtcgggcccgagggcctcgaagaacctcgccagggtgggcttgtcccggcccggg 672
Query: 727 gcggcccacaccagtcggccgctgtcgtggtcgaccacgatggtcaggtaccggtgaccg 786
|||||||| || || |||||| ||||||||||||||||||| || ||||| ||||| ||
Sbjct: 671 gcggcccagacgagccggccggtgtcgtggtcgaccacgatcgtgaggtagcggtggccc 612
Query: 787 cgcttgtagctgatctcgtcgatcccgatccgtttcagaccggcgaaccggtcg 840
||||||| |||||| ||||| ||||||||| ||| |||||||||||||||
Sbjct: 611 ttcttgtaggagatctcatcgatgccgatccgtcgcaggccggcgaaccggtcg 558
Score = 131 bits (66), Expect = 3e-30
Identities = 180/218 (82%)
Strand = Plus / Minus
Query: 1 ggctctactgactgatccgtgggtcagttccggccgggcaggacggggcggtgaccgccg 60
|||||| ||||||||||||||||||| |||||||| || |||||||| ||||| ||||||
Sbjct: 1397 ggctctcctgactgatccgtgggtcatttccggcctgggaggacgggtcggtggccgccg 1338
Query: 61 aggctgagcatggccagggcgatcagggactctggcgagcggaacccgaatgcgatgcgc 120
||| |||||||||| |||||||| |||| || || || ||| ||||| |||| |||
Sbjct: 1337 aggttgagcatggcgagggcgatgagggcttcgggggacttgaagccgaaggcgacgcgg 1278
Query: 121 gtgatcaggcggactttcgtgttgaccgactcgatacgaccgttcgagaggccgtgctcg 180
||||| || |||| || ||||| || || ||||| || ||||| || ||||||||||||
Sbjct: 1277 gtgatgagtcggatcttggtgttcacggattcgatgcgtccgttggacaggccgtgctcg 1218
Query: 181 atcgcggcgaggatggagtcgcggtgcttgacgatgcg 218
|| ||||||||||| ||| | |||||||||||||||
Sbjct: 1217 atggcggcgaggatcgaggccttgtgcttgacgatgcg 1180
Score = 75.8 bits (38), Expect = 1e-13
Identities = 89/106 (83%)
Strand = Plus / Minus
Query: 1195 accagcagctgctcgtcctcgtcgaactcgacctgttcgatgaccgtcttgtcgacgccc 1254
||||||||||| |||||||| |||||||||| | || | ||||||||| |||||||||
Sbjct: 203 accagcagctggtcgtcctcatcgaactcgatgtcctccacgaccgtcttctcgacgccc 144
Query: 1255 aacagggcacgccataggctggcatcacgcacgccgttctccgctc 1300
| || || ||||||||||| || | |||||||||||||||||||
Sbjct: 143 agcaaggaccgccataggcttgcgttccgcacgccgttctccgctc 98
Score = 75.8 bits (38), Expect = 1e-13
Identities = 83/98 (84%)
Strand = Plus / Minus
Query: 871 gtgatgatcgacccgaccgtgcgccaggcgatccgcatcagctgcgtcacggtcgtcttc 930
|||||||||| |||||| |||||||||||||| |||||||||| || || | | |||
Sbjct: 527 gtgatgatcgccccgacggtgcgccaggcgatgcgcatcagctcggtgaccgcggacttg 468
Query: 931 gaggcctgcgtggccagccacgcgacctgctcgtcgaa 968
||| ||||||||||||||| || ||||||||||||||
Sbjct: 467 gagcactgcgtggccagccaggccacctgctcgtcgaa 430
Score = 48.1 bits (24), Expect = 3e-05
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 1069 acctggacggtgcccagatccaacgcccgccaccgccgcc 1108
||||| || ||||||||||||| ||||||||||||||||
Sbjct: 329 acctgcaccgtgcccagatccagggcccgccaccgccgcc 290
Score = 32.2 bits (16), Expect = 1.8
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 751 tcgtggtcgaccacga 766
||||||||||||||||
Sbjct: 632 tcgtggtcgaccacga 647
>IS1557
Length = 1509
Score = 75.8 bits (38), Expect = 1e-13
Identities = 95/114 (83%)
Strand = Plus / Minus
Query: 702 cagggtggccttgtcccgcccgggcgcggcccacaccagtcggccgctgtcgtggtcgac 761
||||||||||||||| | || || ||||||||||||| |||||||||||||| |||||
Sbjct: 746 cagggtggccttgtcgtggcccggggcggcccacaccaaccggccgctgtcgtgatcgac 687
Query: 762 cacgatggtcaggtaccggtgaccgcgcttgtagctgatctcgtcgatcccgat 815
|| | |||||||||||||| |||||||||| |||||| ||||| |||||
Sbjct: 686 gaccaccgtcaggtaccggtggtggcgcttgtaggagatctcatcgataccgat 633
Score = 58.0 bits (29), Expect = 3e-08
Identities = 53/61 (86%)
Strand = Plus / Minus
Query: 850 tcggtgtcggcccacaccctcgtgatgatcgacccgaccgtgcgccaggcgatccgcatc 909
|||||||||||||| |||| | | ||||| |||||| |||||||||||||||||||||
Sbjct: 598 tcggtgtcggcccagacccgggccacgatcgccccgacggtgcgccaggcgatccgcatc 539
Query: 910 a 910
|
Sbjct: 538 a 538
Score = 54.0 bits (27), Expect = 5e-07
Identities = 96/118 (81%), Gaps = 2/118 (1%)
Strand = Plus / Minus
Query: 1 ggctctactgactgatccgtgggt--cagttccggccgggcaggacggggcggtgaccgc 58
||||||||||||||||| |||||| || ||||| ||| || ||||||||| |||
Sbjct: 1485 ggctctactgactgatctgtgggtggttgtgtcggcctggccgggtggggcggtggccgg 1426
Query: 59 cgaggctgagcatggccagggcgatcagggactctggcgagcggaacccgaatgcgat 116
||||| |||||||||| |||||||| |||| | ||| |||||||| ||||| |||||
Sbjct: 1425 cgagggtgagcatggctagggcgatgagggcttgtggtgagcggaatccgaacgcgat 1368
Score = 50.1 bits (25), Expect = 8e-06
Identities = 82/101 (81%)
Strand = Plus / Minus
Query: 536 cgtcgagcgcgtcggtggcccaggagacgacatggaacgggtcagcgcagcggaccgcct 595
|||||||||| ||||||||||||| || ||||| ||||| || ||||| | | ||| |
Sbjct: 912 cgtcgagcgcctcggtggcccaggccaccacatgaaacggatcggcgcattgaatcgcat 853
Query: 596 gcgggcaccgctgggtgacgaccttggcgatccagtccgcg 636
|||||| |||| |||||| || | |||||||||||||||
Sbjct: 852 ccgggcagcgctcggtgaccacgtcagcgatccagtccgcg 812
Score = 46.1 bits (23), Expect = 1e-04
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 418 gggttcttccacaacgcgtaccgggcccccttgag 452
||||||||||||| |||||| ||||| ||||||||
Sbjct: 1066 gggttcttccacagcgcgtagcgggcgcccttgag 1032
Score = 36.2 bits (18), Expect = 0.12
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 994 cgcgcccacggcaccgcc 1011
||||||||||||||||||
Sbjct: 454 cgcgcccacggcaccgcc 437
Score = 34.2 bits (17), Expect = 0.47
Identities = 23/25 (92%)
Strand = Plus / Minus
Query: 1375 cacccacggaagggtcagaggagcc 1399
|||||||||||| |||||| |||||
Sbjct: 60 cacccacggaagtgtcagaagagcc 36
>ISAar34
Length = 1438
Score = 44.1 bits (22), Expect = 5e-04
Identities = 40/46 (86%)
Strand = Plus / Minus
Query: 172 ccgtgctcgatcgcggcgaggatggagtcgcggtgcttgacgatgc 217
||||||||||||| || || |||| |||||||||||||||||||
Sbjct: 1267 ccgtgctcgatcgatgccagaatggcttcgcggtgcttgacgatgc 1222
Score = 38.2 bits (19), Expect = 0.030
Identities = 31/35 (88%)
Strand = Plus / Minus
Query: 784 ccgcgcttgtagctgatctcgtcgatcccgatccg 818
||||| |||||| |||||||||||| ||||||||
Sbjct: 616 ccgcgtttgtaggagatctcgtcgatgccgatccg 582
Score = 38.2 bits (19), Expect = 0.030
Identities = 28/31 (90%)
Strand = Plus / Minus
Query: 58 ccgaggctgagcatggccagggcgatcaggg 88
|||||||||||||| |||||| |||| ||||
Sbjct: 1381 ccgaggctgagcatcgccaggccgatgaggg 1351
Score = 36.2 bits (18), Expect = 0.12
Identities = 24/26 (92%)
Strand = Plus / Minus
Query: 1 ggctctactgactgatccgtgggtca 26
||||||||||||| |||||||||||
Sbjct: 1438 ggctctactgactcttccgtgggtca 1413
Score = 34.2 bits (17), Expect = 0.47
Identities = 35/41 (85%)
Strand = Plus / Minus
Query: 872 tgatgatcgacccgaccgtgcgccaggcgatccgcatcagc 912
||||||| || || || ||||||||||| || |||||||||
Sbjct: 528 tgatgatggagcccacggtgcgccaggcaatgcgcatcagc 488
Score = 30.2 bits (15), Expect = 7.3
Identities = 21/23 (91%)
Strand = Plus / Plus
Query: 1 ggctctactgactgatccgtggg 23
|||||||||||| |||||||||
Sbjct: 1 ggctctactgacatatccgtggg 23
>ISIde1
Length = 1448
Score = 38.2 bits (19), Expect = 0.030
Identities = 31/35 (88%)
Strand = Plus / Minus
Query: 780 gtgaccgcgcttgtagctgatctcgtcgatcccga 814
|||||| |||||| |||| |||||||||||||||
Sbjct: 602 gtgaccacgcttgacgctggtctcgtcgatcccga 568
Score = 32.2 bits (16), Expect = 1.8
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 994 cgcgcccacggcaccg 1009
||||||||||||||||
Sbjct: 391 cgcgcccacggcaccg 376
>ISHam1
Length = 1139
Score = 34.2 bits (17), Expect = 0.47
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 533 cctcgtcgagcgcgtcg 549
|||||||||||||||||
Sbjct: 539 cctcgtcgagcgcgtcg 523
>ISStro2
Length = 912
Score = 34.2 bits (17), Expect = 0.47
Identities = 23/25 (92%)
Strand = Plus / Minus
Query: 722 cgggcgcggcccacaccagtcggcc 746
|||||| ||||||||||| ||||||
Sbjct: 557 cgggcgaggcccacaccaatcggcc 533
>ISHwa7
Length = 1142
Score = 34.2 bits (17), Expect = 0.47
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 533 cctcgtcgagcgcgtcg 549
|||||||||||||||||
Sbjct: 542 cctcgtcgagcgcgtcg 526
>ISMpo10
Length = 4911
Score = 34.2 bits (17), Expect = 0.47
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 1242 cttgtcgacgcccaaca 1258
|||||||||||||||||
Sbjct: 3868 cttgtcgacgcccaaca 3884
>ISStpr1
Length = 1052
Score = 34.2 bits (17), Expect = 0.47
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 957 ctgctcgtcgaacgcgt 973
|||||||||||||||||
Sbjct: 143 ctgctcgtcgaacgcgt 159
>ISCc2
Length = 1213
Score = 34.2 bits (17), Expect = 0.47
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 650 cgtgcgtgactgcggcg 666
|||||||||||||||||
Sbjct: 192 cgtgcgtgactgcggcg 176
>ISHas1
Length = 1955
Score = 32.2 bits (16), Expect = 1.8
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 162 gttcgagaggccgtgc 177
||||||||||||||||
Sbjct: 1453 gttcgagaggccgtgc 1468
>TnAs2
Length = 8650
Score = 32.2 bits (16), Expect = 1.8
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 1106 gcctgccctcaccgccgtcg 1125
||||||||||| ||||||||
Sbjct: 6115 gcctgccctcaacgccgtcg 6134
>ISNpe13
Length = 1160
Score = 32.2 bits (16), Expect = 1.8
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 960 ctcgtcgaacgcgtac 975
||||||||||||||||
Sbjct: 538 ctcgtcgaacgcgtac 523
>ISRfsp2
Length = 1160
Score = 32.2 bits (16), Expect = 1.8
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 525 ccggcgcacctcgtcg 540
||||||||||||||||
Sbjct: 748 ccggcgcacctcgtcg 733
>ISVsp3
Length = 2446
Score = 32.2 bits (16), Expect = 1.8
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 65 tgagcatggccagggc 80
||||||||||||||||
Sbjct: 769 tgagcatggccagggc 754
>ISAzo2
Length = 1545
Score = 32.2 bits (16), Expect = 1.8
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 381 cgcgagcttggcctgctgct 400
||||||||||||||| ||||
Sbjct: 757 cgcgagcttggcctggtgct 738
>ISAde1
Length = 2957
Score = 32.2 bits (16), Expect = 1.8
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 1033 cggcacgagacgcgag 1048
||||||||||||||||
Sbjct: 305 cggcacgagacgcgag 290
Score = 32.2 bits (16), Expect = 1.8
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 742 cggccgctgtcgtggtcgac 761
|||||||||||| |||||||
Sbjct: 1830 cggccgctgtcgcggtcgac 1811
>ISCARN40
Length = 1264
Score = 32.2 bits (16), Expect = 1.8
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 140 tgttgaccgactcgat 155
||||||||||||||||
Sbjct: 1049 tgttgaccgactcgat 1034
>ISGdi15
Length = 1602
Score = 32.2 bits (16), Expect = 1.8
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 777 ccggtgaccgcgcttg 792
||||||||||||||||
Sbjct: 772 ccggtgaccgcgcttg 787
>ISAnsp3
Length = 2518
Score = 32.2 bits (16), Expect = 1.8
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 1033 cggcacgagacgcgag 1048
||||||||||||||||
Sbjct: 305 cggcacgagacgcgag 290
>ISAli12B
Length = 844
Score = 32.2 bits (16), Expect = 1.8
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 317 cgagccgcaggccctc 332
||||||||||||||||
Sbjct: 561 cgagccgcaggccctc 576
>ISAli12A
Length = 845
Score = 32.2 bits (16), Expect = 1.8
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 317 cgagccgcaggccctc 332
||||||||||||||||
Sbjct: 562 cgagccgcaggccctc 577
>ISAeh1
Length = 2320
Score = 32.2 bits (16), Expect = 1.8
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 1203 ctgctcgtcctcgtcgaact 1222
||||||| ||||||||||||
Sbjct: 930 ctgctcggcctcgtcgaact 911
>ISXax1
Length = 1329
Score = 32.2 bits (16), Expect = 1.8
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 140 tgttgaccgactcgat 155
||||||||||||||||
Sbjct: 1114 tgttgaccgactcgat 1099
>IS427
Length = 1271
Score = 32.2 bits (16), Expect = 1.8
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 289 gcagcctgctggtggg 304
||||||||||||||||
Sbjct: 815 gcagcctgctggtggg 800
>ISMipa1
Length = 1629
Score = 30.2 bits (15), Expect = 7.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 1371 gaaccacccacggaa 1385
|||||||||||||||
Sbjct: 269 gaaccacccacggaa 255
>TnAs3
Length = 18735
Score = 30.2 bits (15), Expect = 7.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 534 ctcgtcgagcgcgtc 548
|||||||||||||||
Sbjct: 8437 ctcgtcgagcgcgtc 8451
>ISHalo1
Length = 1671
Score = 30.2 bits (15), Expect = 7.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 1037 acgagacgcgaggcg 1051
|||||||||||||||
Sbjct: 114 acgagacgcgaggcg 128
>ISRsp12
Length = 3701
Score = 30.2 bits (15), Expect = 7.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 179 cgatcgcggcgagga 193
|||||||||||||||
Sbjct: 3514 cgatcgcggcgagga 3500
>ISMno16
Length = 1404
Score = 30.2 bits (15), Expect = 7.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 892 cgccaggcgatccgc 906
|||||||||||||||
Sbjct: 1054 cgccaggcgatccgc 1040
>ISSoc12
Length = 1442
Score = 30.2 bits (15), Expect = 7.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 385 agcttggcctgctgc 399
|||||||||||||||
Sbjct: 206 agcttggcctgctgc 192
>TnAs1
Length = 6694
Score = 30.2 bits (15), Expect = 7.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 324 caggccctccttcag 338
|||||||||||||||
Sbjct: 3412 caggccctccttcag 3398
>ISPko3
Length = 1017
Score = 30.2 bits (15), Expect = 7.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 800 tctcgtcgatcccga 814
|||||||||||||||
Sbjct: 529 tctcgtcgatcccga 515
>ISHoc2
Length = 1715
Score = 30.2 bits (15), Expect = 7.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 307 agctggaagacgagc 321
|||||||||||||||
Sbjct: 198 agctggaagacgagc 212
>ISSlgl1
Length = 1341
Score = 30.2 bits (15), Expect = 7.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 728 cggcccacaccagtc 742
|||||||||||||||
Sbjct: 1269 cggcccacaccagtc 1255
>ISMlu11
Length = 1434
Score = 30.2 bits (15), Expect = 7.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 1060 tccagcaccacctgg 1074
|||||||||||||||
Sbjct: 479 tccagcaccacctgg 493
>ISHvo5
Length = 1001
Score = 30.2 bits (15), Expect = 7.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 236 acgcctcgatgcggc 250
|||||||||||||||
Sbjct: 866 acgcctcgatgcggc 852
>ISAzs33
Length = 1265
Score = 30.2 bits (15), Expect = 7.3
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 913 tgcgtcacggtcgtcttcg 931
|||| ||||||||||||||
Sbjct: 658 tgcggcacggtcgtcttcg 640
>ISNph17
Length = 1587
Score = 30.2 bits (15), Expect = 7.3
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 464 ggccgctggcccggcccgc 482
||||| |||||||||||||
Sbjct: 1356 ggccgatggcccggcccgc 1374
>ISXac4
Length = 1202
Score = 30.2 bits (15), Expect = 7.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 528 gcgcacctcgtcgag 542
|||||||||||||||
Sbjct: 1060 gcgcacctcgtcgag 1046
>ISHwa6
Length = 1002
Score = 30.2 bits (15), Expect = 7.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 236 acgcctcgatgcggc 250
|||||||||||||||
Sbjct: 865 acgcctcgatgcggc 851
>ISCte5
Length = 1321
Score = 30.2 bits (15), Expect = 7.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 381 cgcgagcttggcctg 395
|||||||||||||||
Sbjct: 1087 cgcgagcttggcctg 1073
>ISMno32
Length = 1538
Score = 30.2 bits (15), Expect = 7.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 931 gaggcctgcgtggcc 945
|||||||||||||||
Sbjct: 469 gaggcctgcgtggcc 483
>ISMpo7
Length = 848
Score = 30.2 bits (15), Expect = 7.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 1095 ccgccaccgccgcct 1109
|||||||||||||||
Sbjct: 84 ccgccaccgccgcct 70
>ISPam4
Length = 865
Score = 30.2 bits (15), Expect = 7.3
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 869 tcgtgatgatcgacccgac 887
|||||||||||||| ||||
Sbjct: 340 tcgtgatgatcgacgcgac 358
>ISPfr18
Length = 1437
Score = 30.2 bits (15), Expect = 7.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 753 gtggtcgaccacgat 767
|||||||||||||||
Sbjct: 479 gtggtcgaccacgat 465
>ISArsp6
Length = 26712
Score = 30.2 bits (15), Expect = 7.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 1094 cccgccaccgccgcc 1108
|||||||||||||||
Sbjct: 17005 cccgccaccgccgcc 16991
>ISAau5
Length = 3989
Score = 30.2 bits (15), Expect = 7.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 552 ggcccaggagacgac 566
|||||||||||||||
Sbjct: 3122 ggcccaggagacgac 3136
>ISAar42
Length = 1443
Score = 30.2 bits (15), Expect = 7.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 753 gtggtcgaccacgat 767
|||||||||||||||
Sbjct: 486 gtggtcgaccacgat 472
>ISMsm11
Length = 1658
Score = 30.2 bits (15), Expect = 7.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 53 gaccgccgaggctga 67
|||||||||||||||
Sbjct: 1160 gaccgccgaggctga 1174
>ISAar20
Length = 1449
Score = 30.2 bits (15), Expect = 7.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 561 gacgacatggaacgg 575
|||||||||||||||
Sbjct: 909 gacgacatggaacgg 895
>ISSfu1
Length = 1666
Score = 30.2 bits (15), Expect = 7.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 839 cgaactgcctctcgg 853
|||||||||||||||
Sbjct: 929 cgaactgcctctcgg 915
>ISAde5
Length = 1270
Score = 30.2 bits (15), Expect = 7.3
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 528 gcgcacctcgtcgagcgcg 546
||||| |||||||||||||
Sbjct: 702 gcgcagctcgtcgagcgcg 720
>ISMex16
Length = 1511
Score = 30.2 bits (15), Expect = 7.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 792 gtagctgatctcgtc 806
|||||||||||||||
Sbjct: 389 gtagctgatctcgtc 403
>ISCARN82
Length = 892
Score = 30.2 bits (15), Expect = 7.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 452 ggtccttcgcgtggc 466
|||||||||||||||
Sbjct: 766 ggtccttcgcgtggc 780
>ISCARN78
Length = 2644
Score = 30.2 bits (15), Expect = 7.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 623 cgatccagtccgcgc 637
|||||||||||||||
Sbjct: 2034 cgatccagtccgcgc 2020
>ISCARN58
Length = 2436
Score = 30.2 bits (15), Expect = 7.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 1281 acgcacgccgttctc 1295
|||||||||||||||
Sbjct: 1783 acgcacgccgttctc 1769
>ISCARN12
Length = 1515
Score = 30.2 bits (15), Expect = 7.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 762 cacgatggtcaggta 776
|||||||||||||||
Sbjct: 588 cacgatggtcaggta 574
>ISStau4
Length = 1579
Score = 30.2 bits (15), Expect = 7.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 290 cagcctgctggtggg 304
|||||||||||||||
Sbjct: 618 cagcctgctggtggg 632
>ISBlma9
Length = 2606
Score = 30.2 bits (15), Expect = 7.3
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 1089 caacgcccgccaccgccgc 1107
|||| ||||||||||||||
Sbjct: 143 caactcccgccaccgccgc 125
>ISXoo13
Length = 1312
Score = 30.2 bits (15), Expect = 7.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 1213 tcgtcgaactcgacc 1227
|||||||||||||||
Sbjct: 136 tcgtcgaactcgacc 122
>ISHne3
Length = 1172
Score = 30.2 bits (15), Expect = 7.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 1057 gcctccagcaccacc 1071
|||||||||||||||
Sbjct: 358 gcctccagcaccacc 344
>ISSgr1
Length = 1544
Score = 30.2 bits (15), Expect = 7.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 680 cgagggcgtcgaaga 694
|||||||||||||||
Sbjct: 943 cgagggcgtcgaaga 929
>ISRhsp3
Length = 1104
Score = 30.2 bits (15), Expect = 7.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 1095 ccgccaccgccgcct 1109
|||||||||||||||
Sbjct: 714 ccgccaccgccgcct 700
>ISGbe2
Length = 1352
Score = 30.2 bits (15), Expect = 7.3
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 884 cgaccgtgcgccaggcgat 902
|||||| ||||||||||||
Sbjct: 931 cgaccgcgcgccaggcgat 913
>ISSst1
Length = 1167
Score = 30.2 bits (15), Expect = 7.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 181 atcgcggcgaggatg 195
|||||||||||||||
Sbjct: 814 atcgcggcgaggatg 828
>ISRhosp3
Length = 1349
Score = 30.2 bits (15), Expect = 7.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 548 cggtggcccaggaga 562
|||||||||||||||
Sbjct: 629 cggtggcccaggaga 615
>ISHma1
Length = 1403
Score = 30.2 bits (15), Expect = 7.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 532 acctcgtcgagcgcg 546
|||||||||||||||
Sbjct: 393 acctcgtcgagcgcg 379
>ISFsp3
Length = 2209
Score = 30.2 bits (15), Expect = 7.3
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 475 cggcccgcccggcgccggg 493
|||||||||||||| ||||
Sbjct: 1694 cggcccgcccggcgtcggg 1712
>ISLxx1
Length = 2205
Score = 30.2 bits (15), Expect = 7.3
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 791 tgtagctgatctcgtcgat 809
|||||| ||||||||||||
Sbjct: 1891 tgtagccgatctcgtcgat 1873
>ISXcd1
Length = 1195
Score = 30.2 bits (15), Expect = 7.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 329 cctccttcagcaggt 343
|||||||||||||||
Sbjct: 316 cctccttcagcaggt 302
>ISBli3
Length = 1398
Score = 30.2 bits (15), Expect = 7.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 267 gacccaccggtcgag 281
|||||||||||||||
Sbjct: 645 gacccaccggtcgag 631
>IS987
Length = 1355
Score = 30.2 bits (15), Expect = 7.3
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 175 tgctcgatcgcggcgagga 193
|||||||||||| ||||||
Sbjct: 943 tgctcgatcgcgtcgagga 925
>IS986
Length = 1354
Score = 30.2 bits (15), Expect = 7.3
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 175 tgctcgatcgcggcgagga 193
|||||||||||| ||||||
Sbjct: 942 tgctcgatcgcgtcgagga 924
>IS6110
Length = 1354
Score = 30.2 bits (15), Expect = 7.3
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 175 tgctcgatcgcggcgagga 193
|||||||||||| ||||||
Sbjct: 942 tgctcgatcgcgtcgagga 924
>IS219
Length = 1654
Score = 30.2 bits (15), Expect = 7.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 53 gaccgccgaggctga 67
|||||||||||||||
Sbjct: 1158 gaccgccgaggctga 1172
>IS204
Length = 1452
Score = 30.2 bits (15), Expect = 7.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 204 gtgcttgacgatgcg 218
|||||||||||||||
Sbjct: 1323 gtgcttgacgatgcg 1309
>IS1248B
Length = 830
Score = 30.2 bits (15), Expect = 7.3
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 870 cgtgatgatcgacccgacc 888
||||||||||||| |||||
Sbjct: 330 cgtgatgatcgacgcgacc 348
>IS1248A
Length = 832
Score = 30.2 bits (15), Expect = 7.3
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 870 cgtgatgatcgacccgacc 888
||||||||||||| |||||
Sbjct: 331 cgtgatgatcgacgcgacc 349
>IS1141
Length = 1588
Score = 30.2 bits (15), Expect = 7.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 1001 acggcaccgccgcga 1015
|||||||||||||||
Sbjct: 1393 acggcaccgccgcga 1407
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_51_length_1209_cov_152.176_ID_5270
(1209 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISNml4 | IS256 | Nakamurella multipartita | 38 | 0.026 | |
| ISSru3 | IS1 | Salinibacter ruber | 34 | 0.40 | |
| ISMav9 | ISNCY | ISDol1 | Mycobacterium avium | 32 | 1.6 |
| ISAve4 | IS3 | IS3 | Aeromonas veronii | 32 | 1.6 |
| ISHarch3 | IS200/IS605 | IS1341 | Halophilic archaeon | 32 | 1.6 |
| ISPa52 | IS5 | IS5 | Pseudomonas aeruginosa | 32 | 1.6 |
| ISMyo1 | IS256 | Mycobacterium yongonense | 32 | 1.6 | |
| ISBps3 | IS5 | IS903 | Burkholderia pseudomallei | 32 | 1.6 |
| ISPme2 | IS5 | IS427 | Paracoccus methylutens | 32 | 1.6 |
| ISPfr4 | ISL3 | Propionibacterium freudenreichii | 32 | 1.6 | |
| ISPfr3 | ISL3 | Propionibacterium freudenreichii | 32 | 1.6 | |
| ISPfr1 | ISL3 | Propionibacterium freudenreichii | 32 | 1.6 | |
| ISAnsp7 | IS4 | IS10 | Anaeromyxobacter sp. | 32 | 1.6 |
| ISCARN24 | IS21 | Metagenomic data from CARNOULES | 32 | 1.6 | |
| ISAli18 | ISL3 | Azospirillum lipoferum | 32 | 1.6 | |
| ISMpe1 | IS3 | IS3 | Methylibium petroleiphilum | 32 | 1.6 |
| ISPst5 | IS5 | IS5 | Pseudomonas stutzeri | 32 | 1.6 |
| IS1096 | ISL3 | - | Mycobacterium smegmatis | 32 | 1.6 |
| ISAs33 | IS3 | IS3 | Aeromonas salmonicida | 30 | 6.3 |
| ISNamo22 | IS200/IS605 | IS1341 | Natronomonas moolapensis | 30 | 6.3 |
| ISSyth3 | ISLre2 | Symbiobacterium thermophilum | 30 | 6.3 | |
| ISAzs20 | IS66 | Azospirillum sp. | 30 | 6.3 | |
| ISArsp6 | Tn3 | Arthrobacter sp. | 30 | 6.3 | |
| IS692 | IS66 | Agrobacterium tumefaciens | 30 | 6.3 | |
| ISAar7 | IS21 | Arthrobacter arilaitensis | 30 | 6.3 | |
| ISMex16 | IS3 | IS150 | Methylobacterium extorquens | 30 | 6.3 |
| ISCARN95 | IS21 | Metagenomic data from CARNOULES | 30 | 6.3 | |
| ISThsp6 | IS5 | IS427 | Thiomonas sp. | 30 | 6.3 |
| ISBcen28 | IS21 | Burkholderia cenocepacia | 30 | 6.3 | |
| ISNeu4 | IS3 | IS3 | Nitrosomonas europaea | 30 | 6.3 |
| ISNieu3 | IS3 | IS3 | Nitrosomonas eutropha | 30 | 6.3 |
| ISBcen19 | IS66 | Burkholderia cenocepacia | 30 | 6.3 | |
| IS1538 | IS607 | Mycobacterium tuberculosis | 30 | 6.3 |
>ISNml4
Length = 1462
Score = 38.2 bits (19), Expect = 0.026
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1028 cgtcggcgaccgcgtccac 1046
|||||||||||||||||||
Sbjct: 581 cgtcggcgaccgcgtccac 563
>ISSru3
Length = 808
Score = 34.2 bits (17), Expect = 0.40
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 732 tgaggaaggcgatgtcc 748
|||||||||||||||||
Sbjct: 373 tgaggaaggcgatgtcc 389
>ISMav9
Length = 1572
Score = 32.2 bits (16), Expect = 1.6
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 1100 ccggccggtgcgcgcc 1115
||||||||||||||||
Sbjct: 920 ccggccggtgcgcgcc 905
>ISAve4
Length = 1239
Score = 32.2 bits (16), Expect = 1.6
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 1047 tccctggtcgagcacc 1062
||||||||||||||||
Sbjct: 140 tccctggtcgagcacc 125
>ISHarch3
Length = 1819
Score = 32.2 bits (16), Expect = 1.6
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 425 gcgagtcggtcgatga 440
||||||||||||||||
Sbjct: 1351 gcgagtcggtcgatga 1336
>ISPa52
Length = 1190
Score = 32.2 bits (16), Expect = 1.6
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 1146 gtcgagcacccgctccgggt 1165
|||||||||||| |||||||
Sbjct: 881 gtcgagcacccgttccgggt 900
>ISMyo1
Length = 1472
Score = 32.2 bits (16), Expect = 1.6
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 216 cgccgcgtcaagggct 231
||||||||||||||||
Sbjct: 1315 cgccgcgtcaagggct 1330
>ISBps3
Length = 1133
Score = 32.2 bits (16), Expect = 1.6
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 807 tcgcttgggagccgat 822
||||||||||||||||
Sbjct: 1002 tcgcttgggagccgat 987
>ISPme2
Length = 851
Score = 32.2 bits (16), Expect = 1.6
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 188 ggaggtgcgcgacgtg 203
||||||||||||||||
Sbjct: 624 ggaggtgcgcgacgtg 639
>ISPfr4
Length = 1415
Score = 32.2 bits (16), Expect = 1.6
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 1020 ggccaggacgtcggcg 1035
||||||||||||||||
Sbjct: 1244 ggccaggacgtcggcg 1229
>ISPfr3
Length = 1457
Score = 32.2 bits (16), Expect = 1.6
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 1020 ggccaggacgtcggcg 1035
||||||||||||||||
Sbjct: 1286 ggccaggacgtcggcg 1271
>ISPfr1
Length = 1427
Score = 32.2 bits (16), Expect = 1.6
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 257 gcgcggcggccgtggt 272
||||||||||||||||
Sbjct: 414 gcgcggcggccgtggt 399
>ISAnsp7
Length = 1579
Score = 32.2 bits (16), Expect = 1.6
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 780 ggtcgtcctcgtcgaa 795
||||||||||||||||
Sbjct: 442 ggtcgtcctcgtcgaa 427
>ISCARN24
Length = 2778
Score = 32.2 bits (16), Expect = 1.6
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 309 gtgaaccggcgcgatg 324
||||||||||||||||
Sbjct: 1648 gtgaaccggcgcgatg 1663
Score = 30.2 bits (15), Expect = 6.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 933 ctggtggaccgcgag 947
|||||||||||||||
Sbjct: 1899 ctggtggaccgcgag 1913
>ISAli18
Length = 1752
Score = 32.2 bits (16), Expect = 1.6
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 470 agcagggcagtgacgaaggc 489
|||||||| |||||||||||
Sbjct: 1406 agcagggcggtgacgaaggc 1387
>ISMpe1
Length = 1295
Score = 32.2 bits (16), Expect = 1.6
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 760 ggcggtggccggcgccggaa 779
||||||||||| ||||||||
Sbjct: 934 ggcggtggccgacgccggaa 915
>ISPst5
Length = 1191
Score = 32.2 bits (16), Expect = 1.6
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 1146 gtcgagcacccgctccgggt 1165
|||||||||||| |||||||
Sbjct: 882 gtcgagcacccgttccgggt 901
>IS1096
Length = 2259
Score = 32.2 bits (16), Expect = 1.6
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 1020 ggccaggacgtcggcg 1035
||||||||||||||||
Sbjct: 1266 ggccaggacgtcggcg 1251
>ISAs33
Length = 1239
Score = 30.2 bits (15), Expect = 6.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 1048 ccctggtcgagcacc 1062
|||||||||||||||
Sbjct: 139 ccctggtcgagcacc 125
>ISNamo22
Length = 1706
Score = 30.2 bits (15), Expect = 6.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 835 cgggtcgccagcgat 849
|||||||||||||||
Sbjct: 810 cgggtcgccagcgat 796
>ISSyth3
Length = 1612
Score = 30.2 bits (15), Expect = 6.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 309 gtgaaccggcgcgat 323
|||||||||||||||
Sbjct: 749 gtgaaccggcgcgat 763
>ISAzs20
Length = 2811
Score = 30.2 bits (15), Expect = 6.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 1020 ggccaggacgtcggc 1034
|||||||||||||||
Sbjct: 2465 ggccaggacgtcggc 2451
>ISArsp6
Length = 26712
Score = 30.2 bits (15), Expect = 6.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 1027 acgtcggcgaccgcg 1041
|||||||||||||||
Sbjct: 25886 acgtcggcgaccgcg 25900
>IS692
Length = 2563
Score = 30.2 bits (15), Expect = 6.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 886 gcggttcatgcggcc 900
|||||||||||||||
Sbjct: 99 gcggttcatgcggcc 113
>ISAar7
Length = 2983
Score = 30.2 bits (15), Expect = 6.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 769 cggcgccggaaggtc 783
|||||||||||||||
Sbjct: 274 cggcgccggaaggtc 288
>ISMex16
Length = 1511
Score = 30.2 bits (15), Expect = 6.3
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 949 cgttcccgctcgtccagga 967
|||||||||||| ||||||
Sbjct: 1379 cgttcccgctcggccagga 1361
>ISCARN95
Length = 2610
Score = 30.2 bits (15), Expect = 6.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 582 gccaggtgatgagtc 596
|||||||||||||||
Sbjct: 2007 gccaggtgatgagtc 2021
>ISThsp6
Length = 843
Score = 30.2 bits (15), Expect = 6.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 952 tcccgctcgtccagg 966
|||||||||||||||
Sbjct: 150 tcccgctcgtccagg 136
>ISBcen28
Length = 2311
Score = 30.2 bits (15), Expect = 6.3
Identities = 21/23 (91%)
Strand = Plus / Minus
Query: 1169 gcagcagcgggccgagcagcgcc 1191
|||||||| || |||||||||||
Sbjct: 2068 gcagcagccggtcgagcagcgcc 2046
>ISNeu4
Length = 1270
Score = 30.2 bits (15), Expect = 6.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 225 aagggctgtcggtgg 239
|||||||||||||||
Sbjct: 133 aagggctgtcggtgg 147
>ISNieu3
Length = 1266
Score = 30.2 bits (15), Expect = 6.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 759 aggcggtggccggcg 773
|||||||||||||||
Sbjct: 917 aggcggtggccggcg 903
>ISBcen19
Length = 2450
Score = 30.2 bits (15), Expect = 6.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 1068 ccactcgcgcagcca 1082
|||||||||||||||
Sbjct: 454 ccactcgcgcagcca 440
>IS1538
Length = 2090
Score = 30.2 bits (15), Expect = 6.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 1161 cgggtcgcgcagcag 1175
|||||||||||||||
Sbjct: 401 cgggtcgcgcagcag 387
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_52_length_1119_cov_379.584_ID_5272
(1119 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISMsm5 | IS630 | Mycobacterium smegmatis | 357 | 2e-98 | |
| ISMsm2 | IS630 | Mycobacterium smegmatis | 80 | 7e-15 | |
| ISRso5 | IS630 | - | Ralstonia solanacearum | 72 | 2e-12 |
| ISPpu3 | IS630 | - | Pseudomonas putida | 68 | 3e-11 |
| ISRj1 | IS630 | - | Bradyrhizobium japonicum | 58 | 3e-08 |
| ISMex18 | IS630 | Methylobacterium extorquens | 52 | 2e-06 | |
| ISMno19 | IS630 | Methylobacterium nodulans | 50 | 6e-06 | |
| ISCARN69 | IS630 | Metagenomic data from CARNOULES | 50 | 6e-06 | |
| ISAzba6 | IS630 | Azospirillum brasilense | 48 | 2e-05 | |
| ISAzs31 | IS630 | Azospirillum sp. | 46 | 1e-04 | |
| ISRjo2 | IS630 | Rhodococcus jostii | 44 | 4e-04 | |
| ISPsy1 | IS630 | - | Pseudomonas syringae | 42 | 0.002 |
| ISBmu8 | IS630 | Burkholderia multivorans | 40 | 0.006 | |
| ISAnsp10 | IS630 | Anaeromyxobacter sp. | 38 | 0.024 | |
| ISPpu2 | IS630 | - | Pseudomonas putida | 38 | 0.024 |
| ISApr9 | IS1380 | Alpha proteobacterium | 36 | 0.094 | |
| ISRfr1 | IS630 | - | Rhizobium fredii | 36 | 0.094 |
| ISPme2 | IS5 | IS427 | Paracoccus methylutens | 34 | 0.37 |
| ISMtsp19 | IS701 | Methylobacterium sp. | 34 | 0.37 | |
| ISMaa1 | IS1380 | Marine actinobacterium | 34 | 0.37 | |
| ISCARN21 | IS630 | Metagenomic data from CARNOULES | 34 | 0.37 | |
| ISHar6 | IS110 | IS1111 | Herminiimonas arsenicoxydans | 34 | 0.37 |
| IS1632 | IS256 | - | Bradyrhizobium japonicum | 34 | 0.37 |
| ISMyin1 | ISNCY | ISDol1 | Mycobacterium indicus | 32 | 1.5 |
| ISXci1 | IS21 | Xanthomonas citri | 32 | 1.5 | |
| ISSoc12 | IS200/IS605 | IS1341 | Synechococcus sp | 32 | 1.5 |
| ISPa43 | Tn3 | Pseudomonas aeruginosa | 32 | 1.5 | |
| ISRsp8 | ISL3 | Rhizhobium sp. | 32 | 1.5 | |
| ISCARN54 | IS3 | IS3 | Metagenomic data from CARNOULES | 32 | 1.5 |
| ISAzo15 | IS66 | Azoarcus sp. | 32 | 1.5 | |
| ISKrh1 | IS481 | Kocuria rhizophila | 32 | 1.5 | |
| ISNha1 | IS701 | Nitrobacter hamburgensis | 32 | 1.5 | |
| ISPme1 | IS1380 | Paracoccus methylutens | 32 | 1.5 | |
| ISFsp1 | ISL3 | Frankia sp. | 32 | 1.5 | |
| ISPpu1 | IS630 | - | Pseudomonas putida | 32 | 1.5 |
| IS1420 | IS5 | IS903 | Ralstonia solanacearum | 32 | 1.5 |
| ISPsy32 | IS630 | Pseudomonas syringae | 30 | 5.8 | |
| ISMno20 | IS110 | IS1111 | Methylobacterium nodulans | 30 | 5.8 |
| ISSoc9 | IS200/IS605 | IS1341 | Synechococcus sp | 30 | 5.8 |
| ISHarch3 | IS200/IS605 | IS1341 | Halophilic archaeon | 30 | 5.8 |
| ISHarch2 | IS200/IS605 | IS1341 | Halophilic archaeon | 30 | 5.8 |
| ISHbo8 | IS200/IS605 | IS1341 | Halogeometricum borinquense | 30 | 5.8 |
| ISPa51 | IS5 | IS5 | Pseudomonas aeruginosa | 30 | 5.8 |
| ISSri1 | ISKra4 | ISKra4 | Streptomyces rimosus | 30 | 5.8 |
| ISAzba9 | ISL3 | Azospirillum brasilense | 30 | 5.8 | |
| ISHch3 | IS5 | IS427 | Hahella chejuensis | 30 | 5.8 |
| ISEcl3 | IS5 | IS903 | Enterobacter cloacae | 30 | 5.8 |
| ISPth1 | IS5 | IS903 | Paracoccus thiocyanatus | 30 | 5.8 |
| ISRxy1 | IS1182 | Rubrobacter xylanophilus | 30 | 5.8 | |
| ISRpa9 | IS5 | IS5 | Rhodopseudomonas palustris | 30 | 5.8 |
| ISLsp4 | ISAzo13 | Leptospirillum sp. | 30 | 5.8 | |
| ISStsp1 | ISAzo13 | Streptomyces sp. | 30 | 5.8 | |
| ISAar29 | IS110 | Arthrobacter arilaitensis | 30 | 5.8 | |
| ISMyma7 | IS1380 | - | Mycobacterium marinum | 30 | 5.8 |
| ISAar19 | ISL3 | Arthrobacter arilaitensis | 30 | 5.8 | |
| ISRce1 | ISAs1 | Rhodospirillum centenum | 30 | 5.8 | |
| ISCARN4 | IS21 | Metagenomic data from CARNOULES | 30 | 5.8 | |
| IS1557 | ISL3 | Mycobacterium tuberculosis | 30 | 5.8 | |
| ISAzo9 | IS630 | Azoarcus sp. | 30 | 5.8 | |
| ISPsp4 | IS30 | Pseudomonas sp. | 30 | 5.8 | |
| ISPa32 | IS3 | IS407 | Pseudomonas aeruginosa | 30 | 5.8 |
| ISStau1 | IS3 | IS3 | Stigmatella aurantiaca | 30 | 5.8 |
| ISMca7 | IS5 | IS5 | Methylococcus capsulatus | 30 | 5.8 |
| ISRba2 | IS4 | IS50 | Rhodopirellula baltica | 30 | 5.8 |
| IS883 | IS66 | Ralstonia eutropha | 30 | 5.8 | |
| ISBlo3 | IS3 | Bifidobacterium longum | 30 | 5.8 | |
| ISMav1 | IS21 | - | Mycobacterium avium | 30 | 5.8 |
| IS870 | IS630 | - | Agrobacterium vitis | 30 | 5.8 |
| ISPsy31 | IS3 | IS3 | Pseudomonas syringae | 30 | 5.8 |
| IS1647 | IS5 | IS427 | Streptomyces coelicolor | 30 | 5.8 |
>ISMsm5
Length = 1103
Score = 357 bits (180), Expect = 2e-98
Identities = 626/774 (80%), Gaps = 3/774 (0%)
Strand = Plus / Minus
Query: 4 gtgtcgcgcgtctgagtttcgtttacgggtggcgtggggcaggatctggtcagcggtctt 63
||||||||||||||| || ||||||| ||| ||||||||||| | ||| ||||||||
Sbjct: 1103 gtgtcgcgcgtctgaagtttgtttacgagtg---tggggcaggatttcgtcggcggtctt 1047
Query: 64 ggtccacgtgaaggggtggcatcggtcgttccagccgtcgatgaaggcacggatcgcggt 123
||||||| ||| |||||| || | ||||| ||| ||||||||||| | ||| || |
Sbjct: 1046 ggtccacacgaatgggtgggcgcgttggttccggccctcgatgaaggcgctgatggcagc 987
Query: 124 gacgagttccttgacgctgtcgaaggatccgcggcggatggcctggcgggtgatgatccc 183
|| |||||| || ||||||| ||| || || |||||||| || |||||||||||||||
Sbjct: 986 gatgagttctttaacgctgttgaacgagccccggcggattgcttggcgggtgatgatcga 927
Query: 184 gaagaacacctcgacgaggttgagccaggacccggaggtcggggtgaagtgcagcgtgat 243
||||||||||||||| ||||| | |||||| || |||||||||||||| ||||| || |
Sbjct: 926 gaagaacacctcgaccaggttcaaccaggagcctgaggtcggggtgaaatgcagtgtcac 867
Query: 244 ccgagggttcttctcgagccacgcgttgatctcggcgtgcttgtgggtgtggtagttgtc 303
|| || ||||| | | |||||| ||||| || ||||| ||||||||||||||||||||
Sbjct: 866 gcggggattcttgaccaaccacgcattgatgtcagcgtgtttgtgggtgtggtagttgtc 807
Query: 304 cagcaccacgtgcaggcgccggcgcgggtaggccttggcgaccttcttgaggaagtcgag 363
|||||| ||||| ||||||||||||||| ||||||| |||||||||| |||||
Sbjct: 806 gcacaccacatgcagtttgcggcgcgggtaggcccgggcgaccgtcttgaggaaatcgag 747
Query: 364 gaactcggccttgccatgccggtcgtagcactgatcggtcaccttcccggtcgcgacctc 423
||||||||| ||||| ||||| |||||||| | |||||||| || ||||| |||| ||
Sbjct: 746 gaactcggctttgccgtgccgctcgtagcagcggtcggtcactttgccggttgcgatttc 687
Query: 424 gagcgccgcgaacagcgtcgtcgtcccgttgcgcctgtagtcgtgggtcgccttctccgg 483
| || ||||||| ||| | || ||||||||| |||||||||||||||||||||||
Sbjct: 686 caaggcggcgaacaacgtggcggtgccgttgcgctgatagtcgtgggtcgccttctccgg 627
Query: 484 caggccctgccgaagcggcaggatcggcgcggtccggttcagcgcctggatctgggactt 543
||| ||| | || | ||||| |||||| ||| ||||| || ||||| |||||| |||
Sbjct: 626 cagtcccggacgcaacggcaaaatcggctgggtgcggttgagtgcctgaatctggctctt 567
Query: 544 ctcgtccacgcacagcacaatcgccttgtccggcgggttcaggtacaggcccaccacgtc 603
||||||||||||| ||| | |||||| || || |||||||| |||||||| | ||||||
Sbjct: 566 ttcgtccacgcacaacacgaccgccttttctggtgggttcagatacaggccgatcacgtc 507
Query: 604 gcgcaccttgccctccagctgcgggtcggtggagaacttgaacgtctcccgccgccacgg 663
|| |||||| ||||||| | |||||||||||||||||||||||||| |||||||||||
Sbjct: 506 acggaccttggcctccagttcagggtcggtggagaacttgaacgtctcgcgccgccacgg 447
Query: 664 ctggacccggtacttgcgccacgcccgcgccaccgtcgcgtcccccaccccgaggtgcct 723
| ||||| ||| ||||||||||| |||||||| || ||||| | |||||||||| |
Sbjct: 446 tttgaccccgtagcgtcgccacgcccgggccaccgtggcatccccgatcccgaggtgctt 387
Query: 724 gcccagcagccgggacgaccagtgcgtgaccgccagcgactccggcggcggctc 777
|| ||||| || ||||||||| || || |||| ||| ||||| ||||||||
Sbjct: 386 tccgagcagtcgactcgaccagtgggtcacggccaacgattccggtggcggctc 333
Score = 83.8 bits (42), Expect = 4e-16
Identities = 93/110 (84%)
Strand = Plus / Minus
Query: 866 gcgaaccggtcgcgccacttgatcactgtcgggcgcgagaccccgacctcccgcgccgtg 925
|||||||| || |||||||||||||| ||||| ||||| ||||| |||| ||||||||
Sbjct: 244 gcgaaccgatcccgccacttgatcaccgtcggccgcgacacccccacctgccgcgccgca 185
Query: 926 cccgaggtgcccttcccgtccgcgaccgcgagcacgatccgggcccgctc 975
|||||||| ||| ||||| || ||||| ||||||||||| ||||||||
Sbjct: 184 cccgaggtccccgcaccgtcggccaccgccagcacgatccgcgcccgctc 135
Score = 32.2 bits (16), Expect = 1.5
Identities = 25/28 (89%)
Strand = Plus / Minus
Query: 1089 ctgtaaatcaattaacgacgcgcgacac 1116
||||||| |||||| ||||||||||||
Sbjct: 28 ctgtaaactaattaatgacgcgcgacac 1
Score = 32.2 bits (16), Expect = 1.5
Identities = 22/24 (91%)
Strand = Plus / Minus
Query: 1001 gaccgcgcccacgactccagcgtc 1024
||||||| ||||||||||| ||||
Sbjct: 109 gaccgcgtccacgactccaacgtc 86
>ISMsm2
Length = 1126
Score = 79.8 bits (40), Expect = 7e-15
Identities = 85/100 (85%)
Strand = Plus / Minus
Query: 514 ggtccggttcagcgcctggatctgggacttctcgtccacgcacagcacaatcgccttgtc 573
|||||||||||| ||||||||||||| |||||||||||||||||||| | ||| ||
Sbjct: 607 ggtccggttcagtgcctggatctgggttttctcgtccacgcacagcaccaaggcccgttc 548
Query: 574 cggcgggttcaggtacaggcccaccacgtcgcgcaccttg 613
||| |||||||||||||| || || || ||||| ||||||
Sbjct: 547 cggtgggttcaggtacagcccgacgacatcgcggaccttg 508
Score = 42.1 bits (21), Expect = 0.002
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 197 acgaggttgagccaggacccggaggtcggggtgaagtgcag 237
||||| |||||||||||| | ||||||||||||||||||
Sbjct: 927 acgagattgagccaggacgagctggtcggggtgaagtgcag 887
Score = 30.2 bits (15), Expect = 5.8
Identities = 24/27 (88%)
Strand = Plus / Minus
Query: 43 caggatctggtcagcggtcttggtcca 69
|||||| || || ||||||||||||||
Sbjct: 1081 caggatttgatcggcggtcttggtcca 1055
>ISRso5
Length = 1159
Score = 71.9 bits (36), Expect = 2e-12
Identities = 60/68 (88%)
Strand = Plus / Minus
Query: 541 cttctcgtccacgcacagcacaatcgccttgtccggcgggttcaggtacaggcccaccac 600
||||||||||||||||||||| | || || || ||||||||||| ||||| ||||||||
Sbjct: 614 cttctcgtccacgcacagcaccaatgcattctcgggcgggttcagatacagccccaccac 555
Query: 601 gtcgcgca 608
||||||||
Sbjct: 554 gtcgcgca 547
>ISPpu3
Length = 1135
Score = 67.9 bits (34), Expect = 3e-11
Identities = 67/78 (85%)
Strand = Plus / Minus
Query: 523 cagcgcctggatctgggacttctcgtccacgcacagcacaatcgccttgtccggcgggtt 582
|||| |||||||||||| |||||| |||| ||||||| ||||| ||||| ||||||||
Sbjct: 583 cagcacctggatctgggttttctcgcccactgacagcaccatcgcattgtcaggcgggtt 524
Query: 583 caggtacaggcccaccac 600
||||||||| || |||||
Sbjct: 523 caggtacagcccaaccac 506
Score = 30.2 bits (15), Expect = 5.8
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 220 ggtcggggtgaagtgcagc 238
|||||| ||||||||||||
Sbjct: 894 ggtcggcgtgaagtgcagc 876
>ISRj1
Length = 1122
Score = 58.0 bits (29), Expect = 3e-08
Identities = 47/53 (88%)
Strand = Plus / Minus
Query: 527 gcctggatctgggacttctcgtccacgcacagcacaatcgccttgtccggcgg 579
||||||||| || |||||||||||||||||||||||| ||||| |||||||
Sbjct: 595 gcctggatcgagggcttctcgtccacgcacagcacaatggccttcgccggcgg 543
Score = 32.2 bits (16), Expect = 1.5
Identities = 25/28 (89%)
Strand = Plus / Minus
Query: 410 ccggtcgcgacctcgagcgccgcgaaca 437
||||| ||||| ||||||||||| ||||
Sbjct: 715 ccggtggcgacttcgagcgccgcaaaca 688
>ISMex18
Length = 1167
Score = 52.0 bits (26), Expect = 2e-06
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 192 cctcgacgaggttgagccaggacccggaggtcggggtgaagtgcag 237
||||||||||||||||||| || | |||||||| |||||||||||
Sbjct: 973 cctcgacgaggttgagccaagaggccgaggtcggcgtgaagtgcag 928
Score = 44.1 bits (22), Expect = 4e-04
Identities = 46/54 (85%)
Strand = Plus / Minus
Query: 508 cggcgcggtccggttcagcgcctggatctgggacttctcgtccacgcacagcac 561
||||||||| | | |||||||||||||||| | |||||| || || ||||||||
Sbjct: 654 cggcgcggtgccggtcagcgcctggatctgcggcttctcatcgacacacagcac 601
Score = 34.2 bits (17), Expect = 0.37
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 422 tcgagcgccgcgaacag 438
|||||||||||||||||
Sbjct: 740 tcgagcgccgcgaacag 724
>ISMno19
Length = 1138
Score = 50.1 bits (25), Expect = 6e-06
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 523 cagcgcctggatctgggacttctcgtcca 551
||||||||||||||||||| |||||||||
Sbjct: 609 cagcgcctggatctgggacgtctcgtcca 581
>ISCARN69
Length = 1153
Score = 50.1 bits (25), Expect = 6e-06
Identities = 43/49 (87%)
Strand = Plus / Minus
Query: 424 gagcgccgcgaacagcgtcgtcgtcccgttgcgcctgtagtcgtgggtc 472
|||||| |||||||| || ||||| |||||||| ||||||||||||||
Sbjct: 708 gagcgcggcgaacagggtggtcgtgccgttgcgtttgtagtcgtgggtc 660
>ISAzba6
Length = 1138
Score = 48.1 bits (24), Expect = 2e-05
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 425 agcgccgcgaacagcgtcgtcgtcccgttgcgcctgtagtcgtg 468
||||| ||||||||||| || || ||||||||| ||||||||||
Sbjct: 707 agcgcggcgaacagcgtggtggtgccgttgcgcttgtagtcgtg 664
Score = 36.2 bits (18), Expect = 0.094
Identities = 24/26 (92%)
Strand = Plus / Minus
Query: 524 agcgcctggatctgggacttctcgtc 549
||||||||||||||| |||||||||
Sbjct: 608 agcgcctggatctggctcttctcgtc 583
Score = 30.2 bits (15), Expect = 5.8
Identities = 27/31 (87%)
Strand = Plus / Minus
Query: 169 gcgggtgatgatcccgaagaacacctcgacg 199
||||||||||||| |||||| ||||||||
Sbjct: 966 gcgggtgatgatcgagaagaagccctcgacg 936
>ISAzs31
Length = 1160
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 275 tcggcgtgcttgtgggtgtggtagttgtcca 305
|||||||||||||||||| |||||||||||
Sbjct: 860 tcggcgtgcttgtgggtgccgtagttgtcca 830
Score = 40.1 bits (20), Expect = 0.006
Identities = 38/44 (86%)
Strand = Plus / Minus
Query: 518 cggttcagcgcctggatctgggacttctcgtccacgcacagcac 561
|||| |||||||||||| ||| |||||||||||| |||||||
Sbjct: 614 cggtccagcgcctggatttggctcttctcgtccaccgacagcac 571
>ISRjo2
Length = 1147
Score = 44.1 bits (22), Expect = 4e-04
Identities = 55/66 (83%)
Strand = Plus / Minus
Query: 539 gacttctcgtccacgcacagcacaatcgccttgtccggcgggttcaggtacaggcccacc 598
|||||||||||| |||||| ||| |||||| || ||||||||||| ||||| || ||
Sbjct: 587 gacttctcgtccgcgcacaacacgatcgcccgctcgggcgggttcagatacagaccgacg 528
Query: 599 acgtcg 604
||||||
Sbjct: 527 acgtcg 522
Score = 40.1 bits (20), Expect = 0.006
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 279 cgtgcttgtgggtgtggtagttgtccag 306
|||||||||||||| ||||||||||||
Sbjct: 850 cgtgcttgtgggtggcgtagttgtccag 823
Score = 32.2 bits (16), Expect = 1.5
Identities = 22/24 (91%)
Strand = Plus / Minus
Query: 994 cgaccgcgaccgcgcccacgactc 1017
|||| ||||||||||| |||||||
Sbjct: 126 cgactgcgaccgcgccaacgactc 103
Score = 32.2 bits (16), Expect = 1.5
Identities = 37/44 (84%)
Strand = Plus / Minus
Query: 194 tcgacgaggttgagccaggacccggaggtcggggtgaagtgcag 237
|||||||| |||||||| || |||||| || |||||||||||
Sbjct: 935 tcgacgagattgagccacgaggaggaggtgggagtgaagtgcag 892
>ISPsy1
Length = 2009
Score = 42.1 bits (21), Expect = 0.002
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 518 cggttcagcgcctggatctgg 538
|||||||||||||||||||||
Sbjct: 313 cggttcagcgcctggatctgg 293
Score = 42.1 bits (21), Expect = 0.002
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 518 cggttcagcgcctggatctgg 538
|||||||||||||||||||||
Sbjct: 1495 cggttcagcgcctggatctgg 1475
>ISBmu8
Length = 1165
Score = 40.1 bits (20), Expect = 0.006
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 527 gcctggatctgggacttctc 546
||||||||||||||||||||
Sbjct: 617 gcctggatctgggacttctc 598
>ISAnsp10
Length = 1185
Score = 38.2 bits (19), Expect = 0.024
Identities = 31/35 (88%)
Strand = Plus / Minus
Query: 527 gcctggatctgggacttctcgtccacgcacagcac 561
||||| ||||| ||||||||||| ||||| |||||
Sbjct: 613 gcctgaatctgcgacttctcgtcgacgcagagcac 579
Score = 30.2 bits (15), Expect = 5.8
Identities = 21/23 (91%)
Strand = Plus / Minus
Query: 590 aggcccaccacgtcgcgcacctt 612
||||| || ||||||||||||||
Sbjct: 550 aggccgacgacgtcgcgcacctt 528
>ISPpu2
Length = 1131
Score = 38.2 bits (19), Expect = 0.024
Identities = 64/79 (81%)
Strand = Plus / Minus
Query: 526 cgcctggatctgggacttctcgtccacgcacagcacaatcgccttgtccggcgggttcag 585
|||||||||||||| |||||||| || ||| ||| | || || ||||||||||||||
Sbjct: 581 cgcctggatctgggttttctcgtcaaccgacaacaccagggcgttatccggcgggttcag 522
Query: 586 gtacaggcccaccacgtcg 604
|| || || |||||||||
Sbjct: 521 atagagcccgaccacgtcg 503
>ISApr9
Length = 1668
Score = 36.2 bits (18), Expect = 0.094
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 678 tgcgccacgcccgcgcca 695
||||||||||||||||||
Sbjct: 1332 tgcgccacgcccgcgcca 1349
>ISRfr1
Length = 1136
Score = 36.2 bits (18), Expect = 0.094
Identities = 24/26 (92%)
Strand = Plus / Minus
Query: 524 agcgcctggatctgggacttctcgtc 549
||||||||||||||| |||||||||
Sbjct: 610 agcgcctggatctggctcttctcgtc 585
>ISPme2
Length = 851
Score = 34.2 bits (17), Expect = 0.37
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 595 caccacgtcgcgcacct 611
|||||||||||||||||
Sbjct: 642 caccacgtcgcgcacct 626
>ISMtsp19
Length = 1486
Score = 34.2 bits (17), Expect = 0.37
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 1007 gcccacgactccagcgtcgcc 1027
|||||| ||||||||||||||
Sbjct: 107 gcccacaactccagcgtcgcc 87
>ISMaa1
Length = 1650
Score = 34.2 bits (17), Expect = 0.37
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 427 cgccgcgaacagcgtcg 443
|||||||||||||||||
Sbjct: 1482 cgccgcgaacagcgtcg 1466
>ISCARN21
Length = 1249
Score = 34.2 bits (17), Expect = 0.37
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 193 ctcgacgaggttgagccagga 213
|||||| ||||||||||||||
Sbjct: 1068 ctcgaccaggttgagccagga 1048
>ISHar6
Length = 1359
Score = 34.2 bits (17), Expect = 0.37
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 371 gccttgccatgccggtc 387
|||||||||||||||||
Sbjct: 152 gccttgccatgccggtc 136
>IS1632
Length = 1394
Score = 34.2 bits (17), Expect = 0.37
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 943 gtccgcgaccgcgagca 959
|||||||||||||||||
Sbjct: 346 gtccgcgaccgcgagca 362
>ISMyin1
Length = 1532
Score = 32.2 bits (16), Expect = 1.5
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 688 ccgcgccaccgtcgcg 703
||||||||||||||||
Sbjct: 575 ccgcgccaccgtcgcg 560
>ISXci1
Length = 2013
Score = 32.2 bits (16), Expect = 1.5
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 976 cacgtagctcgcccgg 991
||||||||||||||||
Sbjct: 539 cacgtagctcgcccgg 524
>ISSoc12
Length = 1442
Score = 32.2 bits (16), Expect = 1.5
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 32 gtggcgtggggcagga 47
||||||||||||||||
Sbjct: 1362 gtggcgtggggcagga 1377
>ISPa43
Length = 19903
Score = 32.2 bits (16), Expect = 1.5
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 39 ggggcaggatctggtc 54
||||||||||||||||
Sbjct: 1692 ggggcaggatctggtc 1677
>ISRsp8
Length = 1695
Score = 32.2 bits (16), Expect = 1.5
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 417 cgacctcgagcgccgc 432
||||||||||||||||
Sbjct: 585 cgacctcgagcgccgc 600
>ISCARN54
Length = 1624
Score = 32.2 bits (16), Expect = 1.5
Identities = 22/24 (91%)
Strand = Plus / Plus
Query: 702 cgtcccccaccccgaggtgcctgc 725
||||||| | ||||||||||||||
Sbjct: 81 cgtccccgatcccgaggtgcctgc 104
>ISAzo15
Length = 2441
Score = 32.2 bits (16), Expect = 1.5
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 40 gggcaggatctggtca 55
||||||||||||||||
Sbjct: 1254 gggcaggatctggtca 1269
>ISKrh1
Length = 2854
Score = 32.2 bits (16), Expect = 1.5
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 651 cccgccgccacggctg 666
||||||||||||||||
Sbjct: 749 cccgccgccacggctg 764
>ISNha1
Length = 1452
Score = 32.2 bits (16), Expect = 1.5
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 361 gaggaactcggccttg 376
||||||||||||||||
Sbjct: 1175 gaggaactcggccttg 1190
>ISPme1
Length = 1671
Score = 32.2 bits (16), Expect = 1.5
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 680 cgccacgcccgcgcca 695
||||||||||||||||
Sbjct: 1337 cgccacgcccgcgcca 1352
>ISFsp1
Length = 1732
Score = 32.2 bits (16), Expect = 1.5
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 187 gaacacctcgacgagg 202
||||||||||||||||
Sbjct: 1339 gaacacctcgacgagg 1354
>ISPpu1
Length = 1164
Score = 32.2 bits (16), Expect = 1.5
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 217 ggaggtcggggtgaagtgca 236
||||||||||||||| ||||
Sbjct: 923 ggaggtcggggtgaaatgca 904
>IS1420
Length = 1131
Score = 32.2 bits (16), Expect = 1.5
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 274 ctcggcgtgcttgtgggtgt 293
|||||| |||||||||||||
Sbjct: 150 ctcggcttgcttgtgggtgt 131
>ISPsy32
Length = 1170
Score = 30.2 bits (15), Expect = 5.8
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 218 gaggtcggggtgaagtgca 236
|||||||||||||| ||||
Sbjct: 927 gaggtcggggtgaaatgca 909
>ISMno20
Length = 1798
Score = 30.2 bits (15), Expect = 5.8
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 981 agctcgcccggatcg 995
|||||||||||||||
Sbjct: 513 agctcgcccggatcg 527
>ISSoc9
Length = 1514
Score = 30.2 bits (15), Expect = 5.8
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 592 gcccaccacgtcgcg 606
|||||||||||||||
Sbjct: 575 gcccaccacgtcgcg 561
>ISHarch3
Length = 1819
Score = 30.2 bits (15), Expect = 5.8
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 423 cgagcgccgcgaaca 437
|||||||||||||||
Sbjct: 482 cgagcgccgcgaaca 496
>ISHarch2
Length = 1604
Score = 30.2 bits (15), Expect = 5.8
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 423 cgagcgccgcgaaca 437
|||||||||||||||
Sbjct: 378 cgagcgccgcgaaca 392
>ISHbo8
Length = 1655
Score = 30.2 bits (15), Expect = 5.8
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 423 cgagcgccgcgaaca 437
|||||||||||||||
Sbjct: 376 cgagcgccgcgaaca 390
>ISPa51
Length = 1208
Score = 30.2 bits (15), Expect = 5.8
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 102 cgatgaaggcacgga 116
|||||||||||||||
Sbjct: 295 cgatgaaggcacgga 309
>ISSri1
Length = 2269
Score = 30.2 bits (15), Expect = 5.8
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 963 tccgggcccgctcca 977
|||||||||||||||
Sbjct: 214 tccgggcccgctcca 200
>ISAzba9
Length = 1847
Score = 30.2 bits (15), Expect = 5.8
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 204 tgagccaggacccgg 218
|||||||||||||||
Sbjct: 1783 tgagccaggacccgg 1769
>ISHch3
Length = 965
Score = 30.2 bits (15), Expect = 5.8
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 1012 cgactccagcgtcgc 1026
|||||||||||||||
Sbjct: 615 cgactccagcgtcgc 601
>ISEcl3
Length = 1055
Score = 30.2 bits (15), Expect = 5.8
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 516 tccggttcagcgcct 530
|||||||||||||||
Sbjct: 958 tccggttcagcgcct 944
>ISPth1
Length = 1054
Score = 30.2 bits (15), Expect = 5.8
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 491 tgccgaagcggcagg 505
|||||||||||||||
Sbjct: 282 tgccgaagcggcagg 268
>ISRxy1
Length = 1790
Score = 30.2 bits (15), Expect = 5.8
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 990 ggatcgaccgcgacc 1004
|||||||||||||||
Sbjct: 1008 ggatcgaccgcgacc 994
>ISRpa9
Length = 1539
Score = 30.2 bits (15), Expect = 5.8
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 153 cgcggcggatggcct 167
|||||||||||||||
Sbjct: 1286 cgcggcggatggcct 1272
>ISLsp4
Length = 1295
Score = 30.2 bits (15), Expect = 5.8
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 394 ctgatcggtcacctt 408
|||||||||||||||
Sbjct: 313 ctgatcggtcacctt 299
>ISStsp1
Length = 1694
Score = 30.2 bits (15), Expect = 5.8
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 618 ccagctgcgggtcgg 632
|||||||||||||||
Sbjct: 727 ccagctgcgggtcgg 713
>ISAar29
Length = 1385
Score = 30.2 bits (15), Expect = 5.8
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 1055 gcagtggccatgccc 1069
|||||||||||||||
Sbjct: 251 gcagtggccatgccc 265
>ISMyma7
Length = 1694
Score = 30.2 bits (15), Expect = 5.8
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 785 gcggcgatgatcgcc 799
|||||||||||||||
Sbjct: 1476 gcggcgatgatcgcc 1490
>ISAar19
Length = 1449
Score = 30.2 bits (15), Expect = 5.8
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 1017 ccagcgtcgcccggtcctg 1035
||||||| |||||||||||
Sbjct: 474 ccagcgtagcccggtcctg 456
>ISRce1
Length = 1267
Score = 30.2 bits (15), Expect = 5.8
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 504 ggatcggcgcggtcc 518
|||||||||||||||
Sbjct: 494 ggatcggcgcggtcc 480
>ISCARN4
Length = 2599
Score = 30.2 bits (15), Expect = 5.8
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 41 ggcaggatctggtca 55
|||||||||||||||
Sbjct: 558 ggcaggatctggtca 572
>IS1557
Length = 1509
Score = 30.2 bits (15), Expect = 5.8
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 185 aagaacacctcgacg 199
|||||||||||||||
Sbjct: 385 aagaacacctcgacg 371
>ISAzo9
Length = 1483
Score = 30.2 bits (15), Expect = 5.8
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 827 gggcgcggctcgtcg 841
|||||||||||||||
Sbjct: 589 gggcgcggctcgtcg 575
>ISPsp4
Length = 1084
Score = 30.2 bits (15), Expect = 5.8
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 270 tgatctcggcgtgct 284
|||||||||||||||
Sbjct: 797 tgatctcggcgtgct 783
>ISPa32
Length = 1236
Score = 30.2 bits (15), Expect = 5.8
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 349 cttgaggaagtcgag 363
|||||||||||||||
Sbjct: 113 cttgaggaagtcgag 99
>ISStau1
Length = 1376
Score = 30.2 bits (15), Expect = 5.8
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 767 ggcggcggctccagg 781
|||||||||||||||
Sbjct: 518 ggcggcggctccagg 504
>ISMca7
Length = 1172
Score = 30.2 bits (15), Expect = 5.8
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 847 acccgcgatcccgag 861
|||||||||||||||
Sbjct: 544 acccgcgatcccgag 558
>ISRba2
Length = 1365
Score = 30.2 bits (15), Expect = 5.8
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 790 gatgatcgccgagtc 804
|||||||||||||||
Sbjct: 661 gatgatcgccgagtc 675
>IS883
Length = 2461
Score = 30.2 bits (15), Expect = 5.8
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 670 ccggtacttgcgcca 684
|||||||||||||||
Sbjct: 1615 ccggtacttgcgcca 1629
>ISBlo3
Length = 1480
Score = 30.2 bits (15), Expect = 5.8
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 865 cgcgaaccggtcgcgccac 883
||||| |||||||||||||
Sbjct: 1197 cgcgagccggtcgcgccac 1179
>ISMav1
Length = 2536
Score = 30.2 bits (15), Expect = 5.8
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 787 ggcgatgatcgccga 801
|||||||||||||||
Sbjct: 663 ggcgatgatcgccga 677
>IS870
Length = 1146
Score = 30.2 bits (15), Expect = 5.8
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 523 cagcgcctggatctg 537
|||||||||||||||
Sbjct: 621 cagcgcctggatctg 607
>ISPsy31
Length = 1667
Score = 30.2 bits (15), Expect = 5.8
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 261 gccacgcgttgatct 275
|||||||||||||||
Sbjct: 374 gccacgcgttgatct 360
>IS1647
Length = 878
Score = 30.2 bits (15), Expect = 5.8
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 779 agggtcgcggcgatg 793
|||||||||||||||
Sbjct: 832 agggtcgcggcgatg 818
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_53_length_1081_cov_58.1574_ID_5274
(1081 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISMsm5 | IS630 | Mycobacterium smegmatis | 50 | 6e-06 | |
| ISNpe9 | IS6 | Natrinema pellirubrum | 38 | 0.023 | |
| ISPa36 | IS21 | Pseudomonas aeruginosa | 36 | 0.091 | |
| ISBxe1 | IS3 | IS3 | Burkholderia xenovorans | 36 | 0.091 |
| ISMch7 | IS701 | Methylobacterium chloromethanicum | 34 | 0.36 | |
| ISMav6 | IS110 | Mycobacterium avium | 34 | 0.36 | |
| ISApr7 | IS1595 | ISNwi1 | Alpha proteobacterium | 34 | 0.36 |
| ISBp1 | IS3 | IS407 | Burkholderia pseudomallei | 34 | 0.36 |
| IS902 | IS110 | - | Mycobacterium avium | 34 | 0.36 |
| IS901 | IS110 | - | Mycobacterium avium | 34 | 0.36 |
| ISSoc12 | IS200/IS605 | IS1341 | Synechococcus sp | 32 | 1.4 |
| ISNpe11 | IS200/IS605 | IS1341 | Natrinema pellirubrum | 32 | 1.4 |
| ISPa43 | Tn3 | Pseudomonas aeruginosa | 32 | 1.4 | |
| ISRpa8 | IS5 | IS5 | Rhodopseudomonas palustris | 32 | 1.4 |
| ISAzo15 | IS66 | Azoarcus sp. | 32 | 1.4 | |
| ISPa55 | IS110 | IS1111 | Pseudomonas aeruginosa | 30 | 5.6 |
| ISPa54 | IS5 | IS5 | Pseudomonas aeruginosa | 30 | 5.6 |
| ISRssp7 | ISKra4 | ISAzba1 | Roseovarius sp. | 30 | 5.6 |
| ISAzs17 | Tn3 | Azospirillum sp. | 30 | 5.6 | |
| ISRel9 | IS110 | IS1111 | Rhizobium etli | 30 | 5.6 |
| ISRce2 | IS1182 | Rhodospirillum centenum | 30 | 5.6 | |
| ISMae29 | IS630 | Microcystis aeruginosa | 30 | 5.6 | |
| ISMtsp10 | IS1182 | Methylobacterium sp. | 30 | 5.6 | |
| ISStma2 | IS3 | IS150 | Stenotrophomonas maltophilia | 30 | 5.6 |
| ISCARN43 | IS1595 | ISPna2 | Metagenomic data from CARNOULES | 30 | 5.6 |
| ISCARN4 | IS21 | Metagenomic data from CARNOULES | 30 | 5.6 | |
| ISAli18 | ISL3 | Azospirillum lipoferum | 30 | 5.6 | |
| ISMsm2 | IS630 | Mycobacterium smegmatis | 30 | 5.6 | |
| ISRpa7 | ISAs1 | Rhodopseudomonas palustris | 30 | 5.6 | |
| ISDra3 | IS630 | Deinococcus radiodurans | 30 | 5.6 | |
| ISMk1 | ISNCY | - | Mycobacterium kansasii | 30 | 5.6 |
| IS1162 | IS21 | - | Pseudomonas fluorescens | 30 | 5.6 |
>ISMsm5
Length = 1103
Score = 50.1 bits (25), Expect = 6e-06
Identities = 57/67 (85%), Gaps = 3/67 (4%)
Strand = Plus / Minus
Query: 1008 gtgtcgcgcgtctgagtttcgtttacgggtggcgtggggcaggatctggtcagcggtctt 1067
||||||||||||||| || ||||||| ||| ||||||||||| | ||| ||||||||
Sbjct: 1103 gtgtcgcgcgtctgaagtttgtttacgagtg---tggggcaggatttcgtcggcggtctt 1047
Query: 1068 ggtccac 1074
|||||||
Sbjct: 1046 ggtccac 1040
>ISNpe9
Length = 742
Score = 38.2 bits (19), Expect = 0.023
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 378 cagctggagcggtacctcgccgc 400
|||||||| ||||||||||||||
Sbjct: 429 cagctggatcggtacctcgccgc 407
>ISPa36
Length = 2468
Score = 36.2 bits (18), Expect = 0.091
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 986 gccagccgccgcccggcc 1003
||||||||||||||||||
Sbjct: 447 gccagccgccgcccggcc 464
>ISBxe1
Length = 1282
Score = 36.2 bits (18), Expect = 0.091
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 973 atggtccgcggcggccag 990
||||||||||||||||||
Sbjct: 121 atggtccgcggcggccag 138
>ISMch7
Length = 1412
Score = 34.2 bits (17), Expect = 0.36
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 434 cgcgatgctggcgcggg 450
|||||||||||||||||
Sbjct: 1179 cgcgatgctggcgcggg 1195
>ISMav6
Length = 1472
Score = 34.2 bits (17), Expect = 0.36
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 815 cggcggcaacatggccg 831
|||||||||||||||||
Sbjct: 1096 cggcggcaacatggccg 1112
>ISApr7
Length = 3923
Score = 34.2 bits (17), Expect = 0.36
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 29 gcccattttcagcccggaacg 49
|||||||||||| ||||||||
Sbjct: 2583 gcccattttcaggccggaacg 2603
>ISBp1
Length = 1214
Score = 34.2 bits (17), Expect = 0.36
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 713 tgcgcggcacctgcaac 729
|||||||||||||||||
Sbjct: 605 tgcgcggcacctgcaac 589
>IS902
Length = 1470
Score = 34.2 bits (17), Expect = 0.36
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 815 cggcggcaacatggccg 831
|||||||||||||||||
Sbjct: 1092 cggcggcaacatggccg 1108
>IS901
Length = 1472
Score = 34.2 bits (17), Expect = 0.36
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 815 cggcggcaacatggccg 831
|||||||||||||||||
Sbjct: 1096 cggcggcaacatggccg 1112
>ISSoc12
Length = 1442
Score = 32.2 bits (16), Expect = 1.4
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 1036 gtggcgtggggcagga 1051
||||||||||||||||
Sbjct: 1362 gtggcgtggggcagga 1377
>ISNpe11
Length = 1613
Score = 32.2 bits (16), Expect = 1.4
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 732 tcgcggacgttcctcg 747
||||||||||||||||
Sbjct: 1377 tcgcggacgttcctcg 1392
>ISPa43
Length = 19903
Score = 32.2 bits (16), Expect = 1.4
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 1043 ggggcaggatctggtc 1058
||||||||||||||||
Sbjct: 1692 ggggcaggatctggtc 1677
>ISRpa8
Length = 1540
Score = 32.2 bits (16), Expect = 1.4
Identities = 28/32 (87%)
Strand = Plus / Plus
Query: 293 cgcgccgctgcgcgaaatcgcggttcgagtga 324
||||||||||| ||| |||||||||| ||||
Sbjct: 899 cgcgccgctgctcgatctcgcggttcgggtga 930
>ISAzo15
Length = 2441
Score = 32.2 bits (16), Expect = 1.4
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 1044 gggcaggatctggtca 1059
||||||||||||||||
Sbjct: 1254 gggcaggatctggtca 1269
>ISPa55
Length = 1543
Score = 30.2 bits (15), Expect = 5.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 435 gcgatgctggcgcgg 449
|||||||||||||||
Sbjct: 1096 gcgatgctggcgcgg 1110
>ISPa54
Length = 1159
Score = 30.2 bits (15), Expect = 5.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 920 gcgctcgccgtcctt 934
|||||||||||||||
Sbjct: 541 gcgctcgccgtcctt 527
>ISRssp7
Length = 1434
Score = 30.2 bits (15), Expect = 5.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 905 gctgctttgcgggag 919
|||||||||||||||
Sbjct: 798 gctgctttgcgggag 784
>ISAzs17
Length = 7252
Score = 30.2 bits (15), Expect = 5.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 541 ccacgctggtgctgc 555
|||||||||||||||
Sbjct: 1963 ccacgctggtgctgc 1949
>ISRel9
Length = 1553
Score = 30.2 bits (15), Expect = 5.6
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 219 gaggggcctgtcatgaaga 237
|||||| ||||||||||||
Sbjct: 1219 gagggggctgtcatgaaga 1237
>ISRce2
Length = 1528
Score = 30.2 bits (15), Expect = 5.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 633 gtgatcgacttctcc 647
|||||||||||||||
Sbjct: 150 gtgatcgacttctcc 164
>ISMae29
Length = 1220
Score = 30.2 bits (15), Expect = 5.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 921 cgctcgccgtccttt 935
|||||||||||||||
Sbjct: 827 cgctcgccgtccttt 813
>ISMtsp10
Length = 1778
Score = 30.2 bits (15), Expect = 5.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 286 cgctcaacgcgccgc 300
|||||||||||||||
Sbjct: 65 cgctcaacgcgccgc 51
>ISStma2
Length = 1428
Score = 30.2 bits (15), Expect = 5.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 779 gctcggcatggaact 793
|||||||||||||||
Sbjct: 909 gctcggcatggaact 895
>ISCARN43
Length = 1086
Score = 30.2 bits (15), Expect = 5.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 52 cgccccggaaggggc 66
|||||||||||||||
Sbjct: 905 cgccccggaaggggc 891
>ISCARN4
Length = 2599
Score = 30.2 bits (15), Expect = 5.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 1045 ggcaggatctggtca 1059
|||||||||||||||
Sbjct: 558 ggcaggatctggtca 572
>ISAli18
Length = 1752
Score = 30.2 bits (15), Expect = 5.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 510 ttcgaggacgcgatg 524
|||||||||||||||
Sbjct: 1695 ttcgaggacgcgatg 1681
>ISMsm2
Length = 1126
Score = 30.2 bits (15), Expect = 5.6
Identities = 24/27 (88%)
Strand = Plus / Minus
Query: 1047 caggatctggtcagcggtcttggtcca 1073
|||||| || || ||||||||||||||
Sbjct: 1081 caggatttgatcggcggtcttggtcca 1055
>ISRpa7
Length = 1196
Score = 30.2 bits (15), Expect = 5.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 346 gggtgctcgacgtcg 360
|||||||||||||||
Sbjct: 995 gggtgctcgacgtcg 1009
>ISDra3
Length = 1065
Score = 30.2 bits (15), Expect = 5.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 742 tcctcgccgcaggtg 756
|||||||||||||||
Sbjct: 116 tcctcgccgcaggtg 130
>ISMk1
Length = 947
Score = 30.2 bits (15), Expect = 5.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 248 cggccgcctggcccg 262
|||||||||||||||
Sbjct: 277 cggccgcctggcccg 263
>IS1162
Length = 2634
Score = 30.2 bits (15), Expect = 5.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 980 gcggcggccagccgc 994
|||||||||||||||
Sbjct: 1618 gcggcggccagccgc 1632
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_54_length_1055_cov_84.0971_ID_5276
(1055 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISNpe30 | IS200/IS605 | IS1341 | Natrinema pellirubrum | 36 | 0.089 |
| ISHla20 | IS200/IS605 | IS1341 | Halorubrum lacusprofundi | 36 | 0.089 |
| ISHarch11 | IS200/IS605 | IS1341 | Halophilic archaeon | 36 | 0.089 |
| ISNph11 | IS200/IS605 | IS1341 | Natronomonas pharaonis | 34 | 0.35 |
| ISAzo1 | IS1182 | Azoarcus sp. | 34 | 0.35 | |
| ISTth5 | IS256 | Thermus thermophilus | 34 | 0.35 | |
| IS1554 | IS256 | Mycobacterium tuberculosis | 34 | 0.35 | |
| ISFal3B | IS5 | IS1031 | Frankia alni | 34 | 0.35 |
| ISFal3A | IS5 | IS1031 | Frankia alni | 34 | 0.35 |
| ISAri1 | IS21 | Aeromonas rivuli | 32 | 1.4 | |
| ISNamo16 | IS630 | Natronomonas moolapensis | 32 | 1.4 | |
| ISRxy1 | IS1182 | Rubrobacter xylanophilus | 32 | 1.4 | |
| ISAar30 | ISL3 | Arthrobacter arilaitensis | 32 | 1.4 | |
| ISAli16 | IS110 | Azospirillum lipoferum | 32 | 1.4 | |
| ISSce1 | IS1 | ISMhu11 | Sorangium cellulosum | 32 | 1.4 |
| ISMsm5 | IS630 | Mycobacterium smegmatis | 32 | 1.4 | |
| ISAcr2 | IS6 | Acidiphilium cryptum | 32 | 1.4 | |
| ISMesi1 | IS3 | IS150 | Meiothermus silvanus | 30 | 5.5 |
| ISStsp4 | IS5 | ISL2 | Streptomyces sp. | 30 | 5.5 |
| ISVsp14 | IS4 | IS231 | Verrucomicrobium spinosum | 30 | 5.5 |
| ISRop2 | ISAzo13 | Rhodococcus opacus | 30 | 5.5 | |
| ISMno19 | IS630 | Methylobacterium nodulans | 30 | 5.5 | |
| ISRsp8 | ISL3 | Rhizhobium sp. | 30 | 5.5 | |
| ISAar29 | IS110 | Arthrobacter arilaitensis | 30 | 5.5 | |
| ISMdi7 | IS21 | Methylobacterium dichloromethanicum | 30 | 5.5 | |
| ISApr7 | IS1595 | ISNwi1 | Alpha proteobacterium | 30 | 5.5 |
| ISAnsp3 | IS66 | Anaeromyxobacter sp. | 30 | 5.5 | |
| ISBrsp6 | IS66 | Bradyrhizobium sp. | 30 | 5.5 | |
| ISAva2 | IS66 | ISBst12 | Anabaena variabilis | 30 | 5.5 |
| ISPpr9 | IS6 | Photobacterium profundum | 30 | 5.5 | |
| ISTth3 | IS1634 | Thermus thermophilus | 30 | 5.5 | |
| ISTth1 | IS3 | IS150 | Thermus thermophilus | 30 | 5.5 |
| ISRm9 | IS21 | - | Rhizobium meliloti | 30 | 5.5 |
| ISSme3 | IS66 | Sinorhizobium medicae | 30 | 5.5 | |
| IS1474 | IS21 | - | Pseudomonas alcaligenes | 30 | 5.5 |
>ISNpe30
Length = 1528
Score = 36.2 bits (18), Expect = 0.089
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 199 tcgtggacgcgacggcct 216
||||||||||||||||||
Sbjct: 506 tcgtggacgcgacggcct 489
>ISHla20
Length = 1529
Score = 36.2 bits (18), Expect = 0.089
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 199 tcgtggacgcgacggcct 216
||||||||||||||||||
Sbjct: 499 tcgtggacgcgacggcct 482
>ISHarch11
Length = 1594
Score = 36.2 bits (18), Expect = 0.089
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 199 tcgtggacgcgacggcct 216
||||||||||||||||||
Sbjct: 564 tcgtggacgcgacggcct 547
>ISNph11
Length = 1359
Score = 34.2 bits (17), Expect = 0.35
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 758 cggtcgcaacaagcagg 774
|||||||||||||||||
Sbjct: 983 cggtcgcaacaagcagg 999
>ISAzo1
Length = 1545
Score = 34.2 bits (17), Expect = 0.35
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 800 cgaacaccggttccacg 816
|||||||||||||||||
Sbjct: 1286 cgaacaccggttccacg 1270
>ISTth5
Length = 1263
Score = 34.2 bits (17), Expect = 0.35
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 672 gtatcgctcggccacga 688
|||||||||||||||||
Sbjct: 1138 gtatcgctcggccacga 1122
>IS1554
Length = 1462
Score = 34.2 bits (17), Expect = 0.35
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 306 gcccacgatcaccggcacgaa 326
|||||||||||||||| ||||
Sbjct: 465 gcccacgatcaccggctcgaa 445
>ISFal3B
Length = 1130
Score = 34.2 bits (17), Expect = 0.35
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 559 gtctcccacggcgggaa 575
|||||||||||||||||
Sbjct: 292 gtctcccacggcgggaa 276
>ISFal3A
Length = 1087
Score = 34.2 bits (17), Expect = 0.35
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 559 gtctcccacggcgggaa 575
|||||||||||||||||
Sbjct: 292 gtctcccacggcgggaa 276
>ISAri1
Length = 1942
Score = 32.2 bits (16), Expect = 1.4
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 768 aagcaggctggactgg 783
||||||||||||||||
Sbjct: 837 aagcaggctggactgg 852
>ISNamo16
Length = 1058
Score = 32.2 bits (16), Expect = 1.4
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 805 accggttccacgacga 820
||||||||||||||||
Sbjct: 518 accggttccacgacga 533
>ISRxy1
Length = 1790
Score = 32.2 bits (16), Expect = 1.4
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 501 gctgcgggcggctgcg 516
||||||||||||||||
Sbjct: 807 gctgcgggcggctgcg 822
>ISAar30
Length = 1435
Score = 32.2 bits (16), Expect = 1.4
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 524 cgggatcgtcgtcggc 539
||||||||||||||||
Sbjct: 469 cgggatcgtcgtcggc 484
>ISAli16
Length = 1153
Score = 32.2 bits (16), Expect = 1.4
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 578 cggtcgtgccaggcaa 593
||||||||||||||||
Sbjct: 162 cggtcgtgccaggcaa 147
>ISSce1
Length = 4601
Score = 32.2 bits (16), Expect = 1.4
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 632 cgacggtgggcaaggc 647
||||||||||||||||
Sbjct: 4421 cgacggtgggcaaggc 4406
>ISMsm5
Length = 1103
Score = 32.2 bits (16), Expect = 1.4
Identities = 25/28 (89%)
Strand = Plus / Minus
Query: 47 ctgtaaatcaattaacgacgcgcgacac 74
||||||| |||||| ||||||||||||
Sbjct: 28 ctgtaaactaattaatgacgcgcgacac 1
>ISAcr2
Length = 892
Score = 32.2 bits (16), Expect = 1.4
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 638 tgggcaaggccctgaa 653
||||||||||||||||
Sbjct: 416 tgggcaaggccctgaa 431
>ISMesi1
Length = 1234
Score = 30.2 bits (15), Expect = 5.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 333 ccagggccaccccca 347
|||||||||||||||
Sbjct: 811 ccagggccaccccca 797
>ISStsp4
Length = 902
Score = 30.2 bits (15), Expect = 5.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 739 ggccgccctcgcgcc 753
|||||||||||||||
Sbjct: 362 ggccgccctcgcgcc 376
>ISVsp14
Length = 1351
Score = 30.2 bits (15), Expect = 5.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 358 gctgctgcagccacc 372
|||||||||||||||
Sbjct: 321 gctgctgcagccacc 307
>ISRop2
Length = 2171
Score = 30.2 bits (15), Expect = 5.5
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 1024 tgcgacacctggcctagga 1042
|||||||||||||| ||||
Sbjct: 413 tgcgacacctggccgagga 431
>ISMno19
Length = 1138
Score = 30.2 bits (15), Expect = 5.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 310 acgatcaccggcacg 324
|||||||||||||||
Sbjct: 668 acgatcaccggcacg 682
>ISRsp8
Length = 1695
Score = 30.2 bits (15), Expect = 5.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 375 accccacatcaccat 389
|||||||||||||||
Sbjct: 1052 accccacatcaccat 1066
>ISAar29
Length = 1385
Score = 30.2 bits (15), Expect = 5.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 13 gcagtggccatgccc 27
|||||||||||||||
Sbjct: 251 gcagtggccatgccc 265
>ISMdi7
Length = 2568
Score = 30.2 bits (15), Expect = 5.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 810 ttccacgacgaacat 824
|||||||||||||||
Sbjct: 122 ttccacgacgaacat 108
>ISApr7
Length = 3923
Score = 30.2 bits (15), Expect = 5.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 879 tcgccggtcatttcc 893
|||||||||||||||
Sbjct: 2695 tcgccggtcatttcc 2681
>ISAnsp3
Length = 2518
Score = 30.2 bits (15), Expect = 5.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 604 cgtgcgatttccgcc 618
|||||||||||||||
Sbjct: 392 cgtgcgatttccgcc 406
>ISBrsp6
Length = 3112
Score = 30.2 bits (15), Expect = 5.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 313 atcaccggcacgaac 327
|||||||||||||||
Sbjct: 348 atcaccggcacgaac 334
>ISAva2
Length = 1547
Score = 30.2 bits (15), Expect = 5.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 592 aaggtttccagccgt 606
|||||||||||||||
Sbjct: 1245 aaggtttccagccgt 1231
>ISPpr9
Length = 858
Score = 30.2 bits (15), Expect = 5.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 257 gaagcttgttgtagc 271
|||||||||||||||
Sbjct: 609 gaagcttgttgtagc 623
>ISTth3
Length = 1682
Score = 30.2 bits (15), Expect = 5.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 381 catcaccatccctag 395
|||||||||||||||
Sbjct: 1418 catcaccatccctag 1404
>ISTth1
Length = 1261
Score = 30.2 bits (15), Expect = 5.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 333 ccagggccaccccca 347
|||||||||||||||
Sbjct: 838 ccagggccaccccca 824
>ISRm9
Length = 2798
Score = 30.2 bits (15), Expect = 5.5
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 841 tcgaccgcgccgctctcgt 859
|||||||||||| ||||||
Sbjct: 936 tcgaccgcgccgttctcgt 918
>ISSme3
Length = 3149
Score = 30.2 bits (15), Expect = 5.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 314 tcaccggcacgaaca 328
|||||||||||||||
Sbjct: 385 tcaccggcacgaaca 371
>IS1474
Length = 2633
Score = 30.2 bits (15), Expect = 5.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 874 cgaaatcgccggtca 888
|||||||||||||||
Sbjct: 135 cgaaatcgccggtca 149
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_55_length_932_cov_151.885_ID_5278
(932 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISMt1 | IS5 | IS427 | Mycobacterium tuberculosis | 82 | 1e-15 |
| ISMra2 | IS5 | IS427 | Methylobacterium radiotolerans | 46 | 8e-05 |
| ISThsp6 | IS5 | IS427 | Thiomonas sp. | 44 | 3e-04 |
| IS1648 | IS5 | IS427 | Streptomyces coelicolor | 42 | 0.001 |
| ISMra5 | IS5 | IS427 | Methylobacterium radiotolerans | 40 | 0.005 |
| ISPme2 | IS5 | IS427 | Paracoccus methylutens | 38 | 0.020 |
| ISPam4 | IS5 | IS427 | Paracoccus aminophilus | 38 | 0.020 |
| ISAli9 | IS5 | IS427 | Azospirillum lipoferum | 38 | 0.020 |
| IS1650 | IS5 | IS427 | Streptomyces coelicolor | 38 | 0.020 |
| ISRhru5 | IS5 | IS427 | Rhodospirillum rubrum | 36 | 0.078 |
| ISSyth3 | ISLre2 | Symbiobacterium thermophilum | 32 | 1.2 | |
| ISRel11 | IS5 | IS427 | Rhizobium etli | 32 | 1.2 |
| ISMpo8 | IS5 | IS427 | Methylobacterium populi | 32 | 1.2 |
| ISAzba1 | ISKra4 | ISAzba1 | Azospirillum brasilense | 32 | 1.2 |
| ISDeac1 | IS1380 | Delftia acidovorans | 32 | 1.2 | |
| ISAzba5 | IS5 | IS427 | Azospirillum brasilense | 32 | 1.2 |
| ISAde1 | IS66 | Anaeromyxobacter dehalogenans | 32 | 1.2 | |
| ISMex15 | IS5 | IS427 | Methylobacterium extorquens | 32 | 1.2 |
| ISFpe1 | IS66 | Fulvimarina pelagi | 32 | 1.2 | |
| ISApr6 | IS66 | Alpha proteobacterium | 32 | 1.2 | |
| ISMxa3 | IS66 | ISBst12 | Myxococcus xanthus | 32 | 1.2 |
| ISSme1 | IS3 | IS407 | Sinorhizobium medicae | 32 | 1.2 |
| ISRel1 | IS4 | IS4Sa | Rhizobium etli | 32 | 1.2 |
| ISRsp1 | IS66 | - | Rhizobium sp. | 32 | 1.2 |
| ISRm6 | IS3 | IS407 | Rhizobium meliloti | 32 | 1.2 |
| ISPs1 | IS5 | IS427 | Pseudomonas syringae | 32 | 1.2 |
| ISNGR9 | IS5 | IS427 | Rhizobium sp | 32 | 1.2 |
| ISEhe2 | IS5 | IS427 | Pantoea agglomerans | 32 | 1.2 |
| TnAs3 | Tn3 | Aeromonas salmonicida | 30 | 4.8 | |
| ISMno24 | IS91 | Methylobacterium nodulans | 30 | 4.8 | |
| ISHti3 | IS200/IS605 | IS1341 | Halorhabdus tiamatea | 30 | 4.8 |
| ISGob7 | ISKra4 | ISKra4 | Gemmata obscuriglobus | 30 | 4.8 |
| ISPa43 | Tn3 | Pseudomonas aeruginosa | 30 | 4.8 | |
| ISPbe2 | IS5 | IS427 | Paracoccus bengalensis | 30 | 4.8 |
| ISRel13 | IS5 | IS427 | Rhizobium etli | 30 | 4.8 |
| ISPpa6 | IS5 | IS427 | Paracoccus pantotrophus | 30 | 4.8 |
| ISPaes1 | IS5 | IS427 | Paracoccus aestuarii | 30 | 4.8 |
| ISPna1 | IS630 | Polaromonas naphthalenivorans | 30 | 4.8 | |
| ISBusp3 | IS5 | Burkholderia sp. | 30 | 4.8 | |
| ISSpma3 | IS3 | IS407 | Sphingopyxis macrogoltabida | 30 | 4.8 |
| ISMno18 | IS5 | IS427 | Methylobacterium nodulans | 30 | 4.8 |
| ISHwa2 | IS4 | IS50 | Haloquadratum walsbyi | 30 | 4.8 |
| ISAar43 | IS3 | IS407 | Arthrobacter arilaitensis | 30 | 4.8 |
| ISAar42 | ISL3 | Arthrobacter arilaitensis | 30 | 4.8 | |
| ISSpo7 | IS5 | IS427 | Silicibacter pomeroyi | 30 | 4.8 |
| ISAar1 | IS1595 | ISSod11 | Arthrobacter arilaitensis | 30 | 4.8 |
| ISMdi27 | IS21 | Methylobacterium dichloromethanicum | 30 | 4.8 | |
| ISMex39 | IS21 | Methylobacterium extorquens | 30 | 4.8 | |
| ISThsp20 | IS5 | IS427 | Thiomonas sp. | 30 | 4.8 |
| ISCARN104 | IS66 | Metagenomic data from CARNOULES | 30 | 4.8 | |
| ISVei5 | IS5 | IS5 | Verminephrobacter eiseniae | 30 | 4.8 |
| ISThsp3 | IS66 | Thiomonas sp. | 30 | 4.8 | |
| ISApr7 | IS1595 | ISNwi1 | Alpha proteobacterium | 30 | 4.8 |
| ISCARN1 | IS607 | Metagenomic data from CARNOULES | 30 | 4.8 | |
| ISAli18 | ISL3 | Azospirillum lipoferum | 30 | 4.8 | |
| ISBusp2 | IS5 | IS5 | Burkholderia sp. | 30 | 4.8 |
| ISDds9 | IS5 | IS427 | Deinococcus deserti | 30 | 4.8 |
| ISXoo7 | IS5 | IS5 | Xanthomonas oryzae | 30 | 4.8 |
| ISRm21 | ISAs1 | Sinorhizobium meliloti | 30 | 4.8 | |
| ISAzvi7 | IS4 | IS50 | Azotobacter vinelandii | 30 | 4.8 |
| ISTesp1 | IS3 | IS51 | Terrabacter sp. | 30 | 4.8 |
| IS427 | IS5 | IS427 | Agrobacterium tumefaciens | 30 | 4.8 |
| IS1415 | IS21 | - | Rhodococcus erythropolis | 30 | 4.8 |
| IS1355 | IS5 | IS1031 | Methylobacterium dichloromethanicum | 30 | 4.8 |
| IS1000B | IS110 | - | Thermus thermophilus | 30 | 4.8 |
| IS1000A | IS110 | - | Thermus thermophilus | 30 | 4.8 |
>ISMt1
Length = 969
Score = 81.8 bits (41), Expect = 1e-15
Identities = 62/69 (89%)
Strand = Plus / Minus
Query: 56 tttgtcgtagcgggtggcgatgccgcgccactgcttgagccgcaggtagctgcgctcgac 115
||||||||||||||| ||||||||||||||||||||||| || || ||| ||| |||||
Sbjct: 883 tttgtcgtagcgggttgcgatgccgcgccactgcttgagtcgatggaagccgcgttcgac 824
Query: 116 ggtgttgcg 124
|||||||||
Sbjct: 823 ggtgttgcg 815
Score = 46.1 bits (23), Expect = 8e-05
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 345 tgcgggttgtccccggcctgcccaccggtcaaccggatc 383
||||||||||| |||||||| || ||||||||||||||
Sbjct: 579 tgcgggttgtcgccggcctggcctgcggtcaaccggatc 541
Score = 44.1 bits (22), Expect = 3e-04
Identities = 46/54 (85%)
Strand = Plus / Minus
Query: 712 cgcttccacaaggtctgccacggaccgaactcctcgggcacatcccgccacgga 765
|||||||||| || |||||||| |||||||| |||||| ||||||||||||
Sbjct: 243 cgcttccacaccgtttgccacggcccgaactcagcgggcaggtcccgccacgga 190
Score = 44.1 bits (22), Expect = 3e-04
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 571 tgctggtgcgcccgcacgatcgtcgagtccaccgacag 608
|||||||| ||||||||| |||| || |||||||||||
Sbjct: 384 tgctggtgtgcccgcacgttcgtggaatccaccgacag 347
Score = 36.2 bits (18), Expect = 0.078
Identities = 36/42 (85%)
Strand = Plus / Minus
Query: 848 acggcagcagcggctccacgaccgcccagaactcgtcagaaa 889
|||||| || |||||| || || |||||||||||||| ||||
Sbjct: 107 acggcatcaacggctcgaccacggcccagaactcgtccgaaa 66
Score = 30.2 bits (15), Expect = 4.8
Identities = 21/23 (91%)
Strand = Plus / Minus
Query: 261 gggtgcgagtacgccttgtcggc 283
||||| ||||| |||||||||||
Sbjct: 678 gggtgtgagtaggccttgtcggc 656
>ISMra2
Length = 905
Score = 46.1 bits (23), Expect = 8e-05
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 60 tcgtagcgggtggcgatgccgcgccactgcttgag 94
||||||||||||||||||| ||| ||||||||||
Sbjct: 826 tcgtagcgggtggcgatgcggcgatactgcttgag 792
>ISThsp6
Length = 843
Score = 44.1 bits (22), Expect = 3e-04
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 61 cgtagcgggtggcgatgccgcgccactgcttgag 94
||||||| ||||||||||| |||||| |||||||
Sbjct: 762 cgtagcgcgtggcgatgccccgccaccgcttgag 729
>IS1648
Length = 969
Score = 42.1 bits (21), Expect = 0.001
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 556 cgggcgccggccgcgtgctggtgcgcccg 584
|||||||||||||||||||| || |||||
Sbjct: 401 cgggcgccggccgcgtgctgatgggcccg 373
Score = 30.2 bits (15), Expect = 4.8
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 210 tccgggatcgtgtgc 224
|||||||||||||||
Sbjct: 727 tccgggatcgtgtgc 713
>ISMra5
Length = 832
Score = 40.1 bits (20), Expect = 0.005
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 59 gtcgtagcgggtggcgatgc 78
||||||||||||||||||||
Sbjct: 759 gtcgtagcgggtggcgatgc 740
>ISPme2
Length = 851
Score = 38.2 bits (19), Expect = 0.020
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 57 ttgtcgtagcgggtggcga 75
|||||||||||||||||||
Sbjct: 776 ttgtcgtagcgggtggcga 758
>ISPam4
Length = 865
Score = 38.2 bits (19), Expect = 0.020
Identities = 34/39 (87%)
Strand = Plus / Minus
Query: 58 tgtcgtagcgggtggcgatgccgcgccactgcttgagcc 96
|||||||||||||||| | || |||||| | ||||||||
Sbjct: 782 tgtcgtagcgggtggcaacgcggcgccagtccttgagcc 744
>ISAli9
Length = 846
Score = 38.2 bits (19), Expect = 0.020
Identities = 28/31 (90%)
Strand = Plus / Minus
Query: 418 ggatcttcgtcgacagtccgccgcgggagcg 448
||||||| |||| |||||||||||| |||||
Sbjct: 462 ggatcttggtcgtcagtccgccgcgagagcg 432
>IS1650
Length = 898
Score = 38.2 bits (19), Expect = 0.020
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 55 gtttgtcgtagcgggtggc 73
|||||||||||||||||||
Sbjct: 819 gtttgtcgtagcgggtggc 801
>ISRhru5
Length = 842
Score = 36.2 bits (18), Expect = 0.078
Identities = 33/38 (86%)
Strand = Plus / Minus
Query: 56 tttgtcgtagcgggtggcgatgccgcgccactgcttga 93
|||||| || |||||||||||||| || |||||||||
Sbjct: 767 tttgtcatatcgggtggcgatgccccggaactgcttga 730
>ISSyth3
Length = 1612
Score = 32.2 bits (16), Expect = 1.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 278 gtcggccagcagccgg 293
||||||||||||||||
Sbjct: 1102 gtcggccagcagccgg 1087
>ISRel11
Length = 862
Score = 32.2 bits (16), Expect = 1.2
Identities = 34/40 (85%)
Strand = Plus / Minus
Query: 56 tttgtcgtagcgggtggcgatgccgcgccactgcttgagc 95
|||||||||||| || ||||| | ||||| |||||||||
Sbjct: 783 tttgtcgtagcgcgttgcgattcgccgccattgcttgagc 744
>ISMpo8
Length = 849
Score = 32.2 bits (16), Expect = 1.2
Identities = 25/28 (89%)
Strand = Plus / Minus
Query: 46 ttcgggcctgtttgtcgtagcgggtggc 73
||||||| ||||||||||||| |||||
Sbjct: 786 ttcgggcgagtttgtcgtagcgtgtggc 759
>ISAzba1
Length = 1465
Score = 32.2 bits (16), Expect = 1.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 816 ggaccagcgccgcccg 831
||||||||||||||||
Sbjct: 604 ggaccagcgccgcccg 589
>ISDeac1
Length = 1736
Score = 32.2 bits (16), Expect = 1.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 651 ggcctgctgcaccgcg 666
||||||||||||||||
Sbjct: 1431 ggcctgctgcaccgcg 1446
>ISAzba5
Length = 840
Score = 32.2 bits (16), Expect = 1.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 63 tagcgggtggcgatgc 78
||||||||||||||||
Sbjct: 763 tagcgggtggcgatgc 748
>ISAde1
Length = 2957
Score = 32.2 bits (16), Expect = 1.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 603 cgacaggaggtgctca 618
||||||||||||||||
Sbjct: 2773 cgacaggaggtgctca 2758
>ISMex15
Length = 832
Score = 32.2 bits (16), Expect = 1.2
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 59 gtcgtagcgggtggcgatgc 78
|||||| |||||||||||||
Sbjct: 759 gtcgtatcgggtggcgatgc 740
>ISFpe1
Length = 2489
Score = 32.2 bits (16), Expect = 1.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 107 gcgctcgacggtgttg 122
||||||||||||||||
Sbjct: 2236 gcgctcgacggtgttg 2221
>ISApr6
Length = 2479
Score = 32.2 bits (16), Expect = 1.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 107 gcgctcgacggtgttg 122
||||||||||||||||
Sbjct: 2235 gcgctcgacggtgttg 2220
>ISMxa3
Length = 1926
Score = 32.2 bits (16), Expect = 1.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 650 cggcctgctgcaccgc 665
||||||||||||||||
Sbjct: 1426 cggcctgctgcaccgc 1441
>ISSme1
Length = 1271
Score = 32.2 bits (16), Expect = 1.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 612 gtgctcaacatcgtcg 627
||||||||||||||||
Sbjct: 732 gtgctcaacatcgtcg 747
>ISRel1
Length = 1273
Score = 32.2 bits (16), Expect = 1.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 395 ggtggcctggtcggcc 410
||||||||||||||||
Sbjct: 1120 ggtggcctggtcggcc 1105
>ISRsp1
Length = 3481
Score = 32.2 bits (16), Expect = 1.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 400 cctggtcggccagcgt 415
||||||||||||||||
Sbjct: 1633 cctggtcggccagcgt 1618
>ISRm6
Length = 1261
Score = 32.2 bits (16), Expect = 1.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 612 gtgctcaacatcgtcg 627
||||||||||||||||
Sbjct: 725 gtgctcaacatcgtcg 740
>ISPs1
Length = 910
Score = 32.2 bits (16), Expect = 1.2
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 57 ttgtcgtagcgggtggcgat 76
||||||||||||||| ||||
Sbjct: 831 ttgtcgtagcgggtgccgat 812
>ISNGR9
Length = 857
Score = 32.2 bits (16), Expect = 1.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 274 ccttgtcggccagcag 289
||||||||||||||||
Sbjct: 594 ccttgtcggccagcag 579
>ISEhe2
Length = 929
Score = 32.2 bits (16), Expect = 1.2
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 267 gagtacgccttgtcggccag 286
|||||||| |||||||||||
Sbjct: 650 gagtacgctttgtcggccag 631
>TnAs3
Length = 18735
Score = 30.2 bits (15), Expect = 4.8
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 65 gcgggtggcgatgcc 79
|||||||||||||||
Sbjct: 8473 gcgggtggcgatgcc 8487
>ISMno24
Length = 2157
Score = 30.2 bits (15), Expect = 4.8
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 549 gtcgtgccgggcgccggcc 567
||||||||||||| |||||
Sbjct: 749 gtcgtgccgggcggcggcc 731
>ISHti3
Length = 1400
Score = 30.2 bits (15), Expect = 4.8
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 741 ctcctcgggcacatc 755
|||||||||||||||
Sbjct: 190 ctcctcgggcacatc 176
>ISGob7
Length = 1463
Score = 30.2 bits (15), Expect = 4.8
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 390 gtggcggtggcctgg 404
|||||||||||||||
Sbjct: 627 gtggcggtggcctgg 613
>ISPa43
Length = 19903
Score = 30.2 bits (15), Expect = 4.8
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 282 gccagcagccggaac 296
|||||||||||||||
Sbjct: 17628 gccagcagccggaac 17614
>ISPbe2
Length = 851
Score = 30.2 bits (15), Expect = 4.8
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 56 tttgtcgtagcgggt 70
|||||||||||||||
Sbjct: 777 tttgtcgtagcgggt 763
>ISRel13
Length = 844
Score = 30.2 bits (15), Expect = 4.8
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 434 tccgccgcgggagcg 448
|||||||||||||||
Sbjct: 443 tccgccgcgggagcg 429
>ISPpa6
Length = 850
Score = 30.2 bits (15), Expect = 4.8
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 56 tttgtcgtagcgggt 70
|||||||||||||||
Sbjct: 776 tttgtcgtagcgggt 762
>ISPaes1
Length = 851
Score = 30.2 bits (15), Expect = 4.8
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 56 tttgtcgtagcgggt 70
|||||||||||||||
Sbjct: 777 tttgtcgtagcgggt 763
>ISPna1
Length = 1179
Score = 30.2 bits (15), Expect = 4.8
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 278 gtcggccagcagccg 292
|||||||||||||||
Sbjct: 410 gtcggccagcagccg 396
>ISBusp3
Length = 1349
Score = 30.2 bits (15), Expect = 4.8
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 269 gtacgccttgtcggc 283
|||||||||||||||
Sbjct: 880 gtacgccttgtcggc 866
>ISSpma3
Length = 1269
Score = 30.2 bits (15), Expect = 4.8
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 611 ggtgctcaacatcgt 625
|||||||||||||||
Sbjct: 733 ggtgctcaacatcgt 747
>ISMno18
Length = 864
Score = 30.2 bits (15), Expect = 4.8
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 269 gtacgccttgtcggccagc 287
|||| ||||||||||||||
Sbjct: 605 gtaccccttgtcggccagc 587
Score = 30.2 bits (15), Expect = 4.8
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 57 ttgtcgtagcgggtggcga 75
|||||||||||||| ||||
Sbjct: 784 ttgtcgtagcgggtcgcga 766
>ISHwa2
Length = 1668
Score = 30.2 bits (15), Expect = 4.8
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 323 gtcctcgatcagcgg 337
|||||||||||||||
Sbjct: 554 gtcctcgatcagcgg 540
>ISAar43
Length = 1247
Score = 30.2 bits (15), Expect = 4.8
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 255 gtcgacgggtgcgag 269
|||||||||||||||
Sbjct: 1171 gtcgacgggtgcgag 1157
>ISAar42
Length = 1443
Score = 30.2 bits (15), Expect = 4.8
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 24 agcaggacaccaccg 38
|||||||||||||||
Sbjct: 938 agcaggacaccaccg 952
>ISSpo7
Length = 843
Score = 30.2 bits (15), Expect = 4.8
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 277 tgtcggccagcagcc 291
|||||||||||||||
Sbjct: 574 tgtcggccagcagcc 560
>ISAar1
Length = 1217
Score = 30.2 bits (15), Expect = 4.8
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 784 caacagatcccctcc 798
|||||||||||||||
Sbjct: 264 caacagatcccctcc 250
>ISMdi27
Length = 2476
Score = 30.2 bits (15), Expect = 4.8
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 818 accagcgccgcccgc 832
|||||||||||||||
Sbjct: 1014 accagcgccgcccgc 1000
>ISMex39
Length = 2456
Score = 30.2 bits (15), Expect = 4.8
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 818 accagcgccgcccgc 832
|||||||||||||||
Sbjct: 998 accagcgccgcccgc 984
>ISThsp20
Length = 833
Score = 30.2 bits (15), Expect = 4.8
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 61 cgtagcgggtggcgatgcc 79
||||||| |||||||||||
Sbjct: 752 cgtagcgcgtggcgatgcc 734
>ISCARN104
Length = 2483
Score = 30.2 bits (15), Expect = 4.8
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 879 ctcgtcagaaacctg 893
|||||||||||||||
Sbjct: 138 ctcgtcagaaacctg 124
>ISVei5
Length = 1620
Score = 30.2 bits (15), Expect = 4.8
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 405 tcggccagcgtgtgg 419
|||||||||||||||
Sbjct: 1153 tcggccagcgtgtgg 1139
>ISThsp3
Length = 2455
Score = 30.2 bits (15), Expect = 4.8
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 237 gctcgcagtcgagtt 251
|||||||||||||||
Sbjct: 1305 gctcgcagtcgagtt 1291
>ISApr7
Length = 3923
Score = 30.2 bits (15), Expect = 4.8
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 172 tgcccttggccttgc 186
|||||||||||||||
Sbjct: 514 tgcccttggccttgc 500
>ISCARN1
Length = 2232
Score = 30.2 bits (15), Expect = 4.8
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 690 gtcggttgaccagcg 704
|||||||||||||||
Sbjct: 1643 gtcggttgaccagcg 1629
>ISAli18
Length = 1752
Score = 30.2 bits (15), Expect = 4.8
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 578 gcgcccgcacgatcg 592
|||||||||||||||
Sbjct: 728 gcgcccgcacgatcg 714
>ISBusp2
Length = 1349
Score = 30.2 bits (15), Expect = 4.8
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 269 gtacgccttgtcggc 283
|||||||||||||||
Sbjct: 880 gtacgccttgtcggc 866
>ISDds9
Length = 1254
Score = 30.2 bits (15), Expect = 4.8
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 790 atcccctccagaacc 804
|||||||||||||||
Sbjct: 171 atcccctccagaacc 157
>ISXoo7
Length = 1157
Score = 30.2 bits (15), Expect = 4.8
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 574 tggtgcgcccgcacg 588
|||||||||||||||
Sbjct: 634 tggtgcgcccgcacg 620
>ISRm21
Length = 1167
Score = 30.2 bits (15), Expect = 4.8
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 511 tggcctgcaggctcggaaa 529
|||||||||||| ||||||
Sbjct: 821 tggcctgcaggcccggaaa 803
>ISAzvi7
Length = 1450
Score = 30.2 bits (15), Expect = 4.8
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 26 caggacaccaccgag 40
|||||||||||||||
Sbjct: 322 caggacaccaccgag 336
>ISTesp1
Length = 1353
Score = 30.2 bits (15), Expect = 4.8
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 581 cccgcacgatcgtcg 595
|||||||||||||||
Sbjct: 871 cccgcacgatcgtcg 885
>IS427
Length = 1271
Score = 30.2 bits (15), Expect = 4.8
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 57 ttgtcgtagcgggtggcga 75
|||||||||||||| ||||
Sbjct: 1195 ttgtcgtagcgggtagcga 1177
>IS1415
Length = 2580
Score = 30.2 bits (15), Expect = 4.8
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 435 ccgccgcgggagcgc 449
|||||||||||||||
Sbjct: 1380 ccgccgcgggagcgc 1394
>IS1355
Length = 970
Score = 30.2 bits (15), Expect = 4.8
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 661 accgcggccatcatc 675
|||||||||||||||
Sbjct: 393 accgcggccatcatc 407
>IS1000B
Length = 1196
Score = 30.2 bits (15), Expect = 4.8
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 174 cccttggccttgcgg 188
|||||||||||||||
Sbjct: 464 cccttggccttgcgg 450
>IS1000A
Length = 1196
Score = 30.2 bits (15), Expect = 4.8
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 174 cccttggccttgcgg 188
|||||||||||||||
Sbjct: 464 cccttggccttgcgg 450
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_56_length_878_cov_1.43196_ID_5280
(878 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISMsm7 | IS3 | IS3 | Mycobacterium smegmatis | 38 | 0.019 |
| ISTha2 | ISAs1 | Thauera sp. | 36 | 0.074 | |
| ISAzo3 | ISAs1 | Azoarcus sp. | 36 | 0.074 | |
| ISXca1 | IS3 | IS407 | Xanthomonas campestris | 34 | 0.29 |
| ISPna6 | IS701 | ISAba11 | Polaromonas naphthalenivorans | 32 | 1.2 |
| ISRba8 | IS5 | IS427 | Rhodopirellula baltica | 32 | 1.2 |
| ISArsp6 | Tn3 | Arthrobacter sp. | 32 | 1.2 | |
| ISMyma5 | IS481 | - | Mycobacterium marinum | 32 | 1.2 |
| IS1141 | IS3 | IS3 | Mycobacterium intracellulare | 32 | 1.2 |
| ISSiac4 | ISKra4 | ISKra4 | Singulisphaera acidiphila | 30 | 4.5 |
| ISStau11 | ISAzo13 | Stigmatella aurantiaca | 30 | 4.5 | |
| ISStma16 | IS5 | IS1031 | Stenotrophomonas maltophilia | 30 | 4.5 |
| ISAzs23 | IS3 | IS3 | Azospirillum sp. | 30 | 4.5 |
| ISAzs20 | IS66 | Azospirillum sp. | 30 | 4.5 | |
| ISAzs15 | ISAs1 | Azospirillum sp. | 30 | 4.5 | |
| ISNph16 | IS200/IS605 | IS1341 | Natronomonas pharaonis | 30 | 4.5 |
| ISHwa16 | IS630 | Haloquadratum walsbyi | 30 | 4.5 | |
| ISPfr16 | IS30 | Propionibacterium freudenreichii | 30 | 4.5 | |
| ISRme16 | IS5 | Ralstonia eutropha | 30 | 4.5 | |
| ISMdi26 | IS5 | IS1031 | Methylobacterium dichloromethanicum | 30 | 4.5 |
| ISMex19 | IS5 | IS427 | Methylobacterium extorquens | 30 | 4.5 |
| ISCth12 | IS21 | Clostridium thermocellum | 30 | 4.5 | |
| ISThsp8 | IS1634 | Thiomonas sp. | 30 | 4.5 | |
| ISAau4 | Tn3 | Arthrobacter aurescens | 30 | 4.5 | |
| ISMsm8 | IS30 | Mycobacterium smegmatis | 30 | 4.5 | |
| ISRso20 | IS3 | IS3 | Ralstonia solanacearum | 30 | 4.5 |
| ISBmu3 | IS21 | Burkholderia multivorans | 30 | 4.5 | |
| ISPpu2 | IS630 | - | Pseudomonas putida | 30 | 4.5 |
| IS1535 | IS607 | Mycobacterium tuberculosis | 30 | 4.5 | |
| IS1312 | IS3 | IS2 | Agrobacterium tumefaciens | 30 | 4.5 |
| IS1132 | IS256 | - | Corynebacterium diphtheriae | 30 | 4.5 |
| IS1112b | IS30 | - | Xanthomonas oryzae | 30 | 4.5 |
| IS1112 | IS30 | - | Xanthomonas oryzae | 30 | 4.5 |
| IS1096 | ISL3 | - | Mycobacterium smegmatis | 30 | 4.5 |
>ISMsm7
Length = 1280
Score = 38.2 bits (19), Expect = 0.019
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 482 tggcgccggcggcgatggt 500
|||||||||||||||||||
Sbjct: 1163 tggcgccggcggcgatggt 1145
>ISTha2
Length = 1268
Score = 36.2 bits (18), Expect = 0.074
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 650 tgctgacggtggcggtgt 667
||||||||||||||||||
Sbjct: 216 tgctgacggtggcggtgt 233
>ISAzo3
Length = 1282
Score = 36.2 bits (18), Expect = 0.074
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 650 tgctgacggtggcggtgt 667
||||||||||||||||||
Sbjct: 215 tgctgacggtggcggtgt 232
>ISXca1
Length = 1225
Score = 34.2 bits (17), Expect = 0.29
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 831 ggcgaagctgagcgtgc 847
|||||||||||||||||
Sbjct: 593 ggcgaagctgagcgtgc 609
>ISPna6
Length = 1124
Score = 32.2 bits (16), Expect = 1.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 839 tgagcgtgccgcccac 854
||||||||||||||||
Sbjct: 294 tgagcgtgccgcccac 279
>ISRba8
Length = 929
Score = 32.2 bits (16), Expect = 1.2
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 115 gtgctgcccgcggcga 130
||||||||||||||||
Sbjct: 303 gtgctgcccgcggcga 288
>ISArsp6
Length = 26712
Score = 32.2 bits (16), Expect = 1.2
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 732 gttggccgggttgctcagca 751
||||||| ||||||||||||
Sbjct: 871 gttggccaggttgctcagca 890
>ISMyma5
Length = 1838
Score = 32.2 bits (16), Expect = 1.2
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 479 tggtggcgccggcggc 494
||||||||||||||||
Sbjct: 1068 tggtggcgccggcggc 1083
>IS1141
Length = 1588
Score = 32.2 bits (16), Expect = 1.2
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 437 cggcgtaggcgtcgtcgagc 456
||||||||||| ||||||||
Sbjct: 1452 cggcgtaggcggcgtcgagc 1433
>ISSiac4
Length = 1519
Score = 30.2 bits (15), Expect = 4.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 783 ggcgtcgtcggtgat 797
|||||||||||||||
Sbjct: 220 ggcgtcgtcggtgat 206
>ISStau11
Length = 1349
Score = 30.2 bits (15), Expect = 4.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 316 ggattgtcgctgccg 330
|||||||||||||||
Sbjct: 217 ggattgtcgctgccg 231
>ISStma16
Length = 846
Score = 30.2 bits (15), Expect = 4.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 503 cggccgtggtcaccg 517
|||||||||||||||
Sbjct: 506 cggccgtggtcaccg 492
>ISAzs23
Length = 1596
Score = 30.2 bits (15), Expect = 4.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 428 cgccgctgtcggcgt 442
|||||||||||||||
Sbjct: 605 cgccgctgtcggcgt 619
>ISAzs20
Length = 2811
Score = 30.2 bits (15), Expect = 4.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 797 tcggcacggtgatcg 811
|||||||||||||||
Sbjct: 441 tcggcacggtgatcg 455
>ISAzs15
Length = 1263
Score = 30.2 bits (15), Expect = 4.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 410 tgctggcggtgaagg 424
|||||||||||||||
Sbjct: 691 tgctggcggtgaagg 705
>ISNph16
Length = 1516
Score = 30.2 bits (15), Expect = 4.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 377 ggttctcgtagccgc 391
|||||||||||||||
Sbjct: 1283 ggttctcgtagccgc 1269
>ISHwa16
Length = 1066
Score = 30.2 bits (15), Expect = 4.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 188 gcgtcacgttcagcg 202
|||||||||||||||
Sbjct: 437 gcgtcacgttcagcg 451
>ISPfr16
Length = 1234
Score = 30.2 bits (15), Expect = 4.5
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 415 gcggtgaaggtctcgccgc 433
||||||||||| |||||||
Sbjct: 320 gcggtgaaggtatcgccgc 302
>ISRme16
Length = 1331
Score = 30.2 bits (15), Expect = 4.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 396 cgaggtgctggcgat 410
|||||||||||||||
Sbjct: 471 cgaggtgctggcgat 485
>ISMdi26
Length = 859
Score = 30.2 bits (15), Expect = 4.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 475 gcgctggtggcgccg 489
|||||||||||||||
Sbjct: 94 gcgctggtggcgccg 108
>ISMex19
Length = 849
Score = 30.2 bits (15), Expect = 4.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 526 tcgccgttgtcggtg 540
|||||||||||||||
Sbjct: 606 tcgccgttgtcggtg 620
>ISCth12
Length = 2497
Score = 30.2 bits (15), Expect = 4.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 849 gcccacattgccgta 863
|||||||||||||||
Sbjct: 1986 gcccacattgccgta 1972
>ISThsp8
Length = 1929
Score = 30.2 bits (15), Expect = 4.5
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 728 cggcgttggccgggttgct 746
|||||||||||||| ||||
Sbjct: 670 cggcgttggccgggctgct 688
>ISAau4
Length = 3898
Score = 30.2 bits (15), Expect = 4.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 107 tgccggtggtgctgc 121
|||||||||||||||
Sbjct: 664 tgccggtggtgctgc 678
>ISMsm8
Length = 1457
Score = 30.2 bits (15), Expect = 4.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 726 gccggcgttggccgg 740
|||||||||||||||
Sbjct: 1053 gccggcgttggccgg 1067
>ISRso20
Length = 1287
Score = 30.2 bits (15), Expect = 4.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 783 ggcgtcgtcggtgat 797
|||||||||||||||
Sbjct: 506 ggcgtcgtcggtgat 492
>ISBmu3
Length = 2697
Score = 30.2 bits (15), Expect = 4.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 66 cggttcgctgatcac 80
|||||||||||||||
Sbjct: 173 cggttcgctgatcac 159
>ISPpu2
Length = 1131
Score = 30.2 bits (15), Expect = 4.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 832 gcgaagctgagcgtg 846
|||||||||||||||
Sbjct: 1086 gcgaagctgagcgtg 1100
>IS1535
Length = 2300
Score = 30.2 bits (15), Expect = 4.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 650 tgctgacggtggcgg 664
|||||||||||||||
Sbjct: 1907 tgctgacggtggcgg 1921
>IS1312
Length = 1317
Score = 30.2 bits (15), Expect = 4.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 47 agacgctgtagttct 61
|||||||||||||||
Sbjct: 346 agacgctgtagttct 332
>IS1132
Length = 1441
Score = 30.2 bits (15), Expect = 4.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 97 acatcaaaggtgccg 111
|||||||||||||||
Sbjct: 370 acatcaaaggtgccg 356
>IS1112b
Length = 1055
Score = 30.2 bits (15), Expect = 4.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 689 catcggtgatggtgc 703
|||||||||||||||
Sbjct: 929 catcggtgatggtgc 915
>IS1112
Length = 1055
Score = 30.2 bits (15), Expect = 4.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 689 catcggtgatggtgc 703
|||||||||||||||
Sbjct: 929 catcggtgatggtgc 915
>IS1096
Length = 2259
Score = 30.2 bits (15), Expect = 4.5
Identities = 21/23 (91%)
Strand = Plus / Minus
Query: 386 agccgccgcccgaggtgctggcg 408
||||| |||||||||||| ||||
Sbjct: 2059 agccgacgcccgaggtgcgggcg 2037
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_57_length_832_cov_84.1775_ID_5282
(832 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISSgr1 | IS110 | IS1111 | Streptomyces griseus | 44 | 3e-04 |
| ISStac1 | IS110 | IS1111 | Streptomyces aculeolatus | 36 | 0.070 |
| IS110 | IS110 | - | Streptomyces coelicolor | 36 | 0.070 |
| ISSiac5 | ISLre2 | Singulisphaera acidiphila | 34 | 0.28 | |
| ISSaci1 | ISAzo13 | Streptomyces acidiscabies | 32 | 1.1 | |
| ISAzs29 | Tn3 | Azospirillum sp. | 32 | 1.1 | |
| ISSav7 | IS481 | Streptomyces avermitilis | 32 | 1.1 | |
| ISApr6 | IS66 | Alpha proteobacterium | 32 | 1.1 | |
| IS666 | IS256 | - | Mycobacterium avium | 32 | 1.1 |
| ISMno24 | IS91 | Methylobacterium nodulans | 30 | 4.3 | |
| ISHla15 | IS200/IS605 | Halorubrum lacusprofundi | 30 | 4.3 | |
| TnAs2 | Tn3 | Aeromonas salmonicida | 30 | 4.3 | |
| ISVsp8 | IS1380 | Verrucomicrobium spinosum | 30 | 4.3 | |
| ISMch6 | IS110 | Methylobacterium chloromethanicum | 30 | 4.3 | |
| ISArsp6 | Tn3 | Arthrobacter sp. | 30 | 4.3 | |
| ISAcl2 | IS3 | IS3 | Arthrobacter chlorophenolicus | 30 | 4.3 |
| ISVsp19 | IS1380 | Verrucomicrobium spinosum | 30 | 4.3 | |
| ISAzba6 | IS630 | Azospirillum brasilense | 30 | 4.3 | |
| ISAzo26 | IS91 | Azoarcus sp. | 30 | 4.3 | |
| ISCARN45 | IS256 | Metagenomic data from CARNOULES | 30 | 4.3 | |
| ISMpo2 | IS1595 | ISNwi1 | Methylobacterium populi | 30 | 4.3 |
| ISPre3 | IS66 | Pseudomonas resinovorans | 30 | 4.3 | |
| ISHar4 | IS30 | Herminiimonas arsenicoxydans | 30 | 4.3 | |
| ISGvi5 | IS3 | IS3 | Gloeobacter violaceus | 30 | 4.3 |
| ISRsp1 | IS66 | - | Rhizobium sp. | 30 | 4.3 |
>ISSgr1
Length = 1544
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 687 gccgtggatcgaggtcccggac 708
||||||||||||||||||||||
Sbjct: 1242 gccgtggatcgaggtcccggac 1221
>ISStac1
Length = 1484
Score = 36.2 bits (18), Expect = 0.070
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 687 gccgtggatcgaggtcccggac 708
||||||||||||||| ||||||
Sbjct: 1242 gccgtggatcgaggttccggac 1221
>IS110
Length = 1558
Score = 36.2 bits (18), Expect = 0.070
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 687 gccgtggatcgaggtcccggac 708
||||||||||||||| ||||||
Sbjct: 1242 gccgtggatcgaggtaccggac 1221
>ISSiac5
Length = 1429
Score = 34.2 bits (17), Expect = 0.28
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 99 ctgcctggcggcggcga 115
|||||||||||||||||
Sbjct: 496 ctgcctggcggcggcga 512
>ISSaci1
Length = 1747
Score = 32.2 bits (16), Expect = 1.1
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 654 gcggttcggggcgcag 669
||||||||||||||||
Sbjct: 1263 gcggttcggggcgcag 1248
>ISAzs29
Length = 3897
Score = 32.2 bits (16), Expect = 1.1
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 227 ccggcagccgcccggc 242
||||||||||||||||
Sbjct: 1499 ccggcagccgcccggc 1514
>ISSav7
Length = 2992
Score = 32.2 bits (16), Expect = 1.1
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 357 ggcgaccgcgcgggtg 372
||||||||||||||||
Sbjct: 806 ggcgaccgcgcgggtg 821
>ISApr6
Length = 2479
Score = 32.2 bits (16), Expect = 1.1
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 327 gatcgtggcggcgttc 342
||||||||||||||||
Sbjct: 1044 gatcgtggcggcgttc 1059
Score = 30.2 bits (15), Expect = 4.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 663 ggcgcagttccgggt 677
|||||||||||||||
Sbjct: 1350 ggcgcagttccgggt 1364
>IS666
Length = 1472
Score = 32.2 bits (16), Expect = 1.1
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 728 cggccaccacgatcac 743
||||||||||||||||
Sbjct: 577 cggccaccacgatcac 592
>ISMno24
Length = 2157
Score = 30.2 bits (15), Expect = 4.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 590 acccgcacgggcagg 604
|||||||||||||||
Sbjct: 670 acccgcacgggcagg 684
>ISHla15
Length = 1835
Score = 30.2 bits (15), Expect = 4.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 160 ctctcggacgtgtac 174
|||||||||||||||
Sbjct: 777 ctctcggacgtgtac 791
>TnAs2
Length = 8650
Score = 30.2 bits (15), Expect = 4.3
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 737 cgatcaccgtcaagcaggc 755
|||||||||||||| ||||
Sbjct: 1012 cgatcaccgtcaagaaggc 1030
>ISVsp8
Length = 1802
Score = 30.2 bits (15), Expect = 4.3
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 271 accacctgcctgccgaacc 289
|||||||||||||| ||||
Sbjct: 832 accacctgcctgccaaacc 814
>ISMch6
Length = 1379
Score = 30.2 bits (15), Expect = 4.3
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 110 cggcgacggcggcgtgcgc 128
|||||| ||||||||||||
Sbjct: 632 cggcgaaggcggcgtgcgc 614
>ISArsp6
Length = 26712
Score = 30.2 bits (15), Expect = 4.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 91 agtggtcactgcctg 105
|||||||||||||||
Sbjct: 11795 agtggtcactgcctg 11781
>ISAcl2
Length = 1243
Score = 30.2 bits (15), Expect = 4.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 121 gcgtgcgcggacaac 135
|||||||||||||||
Sbjct: 996 gcgtgcgcggacaac 1010
>ISVsp19
Length = 1802
Score = 30.2 bits (15), Expect = 4.3
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 271 accacctgcctgccgaacc 289
|||||||||||||| ||||
Sbjct: 832 accacctgcctgccaaacc 814
>ISAzba6
Length = 1138
Score = 30.2 bits (15), Expect = 4.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 234 ccgcccggccggtcc 248
|||||||||||||||
Sbjct: 403 ccgcccggccggtcc 389
>ISAzo26
Length = 2604
Score = 30.2 bits (15), Expect = 4.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 590 acccgcacgggcagg 604
|||||||||||||||
Sbjct: 1596 acccgcacgggcagg 1582
>ISCARN45
Length = 1430
Score = 30.2 bits (15), Expect = 4.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 801 cgagcgctgggggcg 815
|||||||||||||||
Sbjct: 213 cgagcgctgggggcg 227
>ISMpo2
Length = 3089
Score = 30.2 bits (15), Expect = 4.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 311 tgccgacggtcgaga 325
|||||||||||||||
Sbjct: 2092 tgccgacggtcgaga 2106
>ISPre3
Length = 2957
Score = 30.2 bits (15), Expect = 4.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 719 tgcgccagccggcca 733
|||||||||||||||
Sbjct: 2368 tgcgccagccggcca 2382
>ISHar4
Length = 1253
Score = 30.2 bits (15), Expect = 4.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 774 ccagtgacccggcac 788
|||||||||||||||
Sbjct: 783 ccagtgacccggcac 769
>ISGvi5
Length = 1287
Score = 30.2 bits (15), Expect = 4.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 100 tgcctggcggcggcg 114
|||||||||||||||
Sbjct: 450 tgcctggcggcggcg 464
>ISRsp1
Length = 3481
Score = 30.2 bits (15), Expect = 4.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 104 tggcggcggcgacgg 118
|||||||||||||||
Sbjct: 1181 tggcggcggcgacgg 1195
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_58_length_639_cov_1.67616_ID_5288
(639 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| IS1490 | IS256 | - | Burkholderia cepacia | 36 | 0.053 |
| ISCARN113 | ISL3 | Metagenomic data from CARNOULES | 34 | 0.21 | |
| IS900 | IS110 | - | Mycobacterium paratuberculosis | 34 | 0.21 |
| ISMex10 | ISL3 | Methylobacterium extorquens | 32 | 0.83 | |
| ISBce5 | IS4 | IS231 | Bacillus cereus | 32 | 0.83 |
| ISTni1 | ISKra4 | ISKra4 | Thioalkalivibrio nitratireducens | 30 | 3.3 |
| ISAzs15 | ISAs1 | Azospirillum sp. | 30 | 3.3 | |
| ISAcp1 | IS5 | IS5 | Acidobacterium capsulatum | 30 | 3.3 |
| ISRsp5 | IS5 | Rhizobium sp. | 30 | 3.3 | |
| IS692 | IS66 | Agrobacterium tumefaciens | 30 | 3.3 | |
| ISMsi2 | IS3 | IS407 | Methylocella silvestris | 30 | 3.3 |
| ISVer2 | ISAs1 | Bacterium Ellin514 | 30 | 3.3 | |
| ISCARN81 | IS3 | IS3 | Metagenomic data from CARNOULES | 30 | 3.3 |
| ISCARN22 | IS66 | Metagenomic data from CARNOULES | 30 | 3.3 | |
| ISSsp5 | IS21 | Sphingomonas sp. | 30 | 3.3 |
>IS1490
Length = 1433
Score = 36.2 bits (18), Expect = 0.053
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 307 cttctttttcagtaaacttgct 328
|||||||||| |||||||||||
Sbjct: 145 cttctttttctgtaaacttgct 124
>ISCARN113
Length = 1329
Score = 34.2 bits (17), Expect = 0.21
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 182 gccctttacgaacatct 198
|||||||||||||||||
Sbjct: 88 gccctttacgaacatct 104
>IS900
Length = 1451
Score = 34.2 bits (17), Expect = 0.21
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 497 ttgtgccacaaccacct 513
|||||||||||||||||
Sbjct: 244 ttgtgccacaaccacct 228
>ISMex10
Length = 1754
Score = 32.2 bits (16), Expect = 0.83
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 572 cgccggctggccgggg 587
||||||||||||||||
Sbjct: 382 cgccggctggccgggg 397
>ISBce5
Length = 1653
Score = 32.2 bits (16), Expect = 0.83
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 53 acagcctgatcctgta 68
||||||||||||||||
Sbjct: 998 acagcctgatcctgta 983
>ISTni1
Length = 2377
Score = 30.2 bits (15), Expect = 3.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 261 ctgatcctgccctgg 275
|||||||||||||||
Sbjct: 686 ctgatcctgccctgg 700
>ISAzs15
Length = 1263
Score = 30.2 bits (15), Expect = 3.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 618 atgccatggggtgcc 632
|||||||||||||||
Sbjct: 631 atgccatggggtgcc 645
>ISAcp1
Length = 1483
Score = 30.2 bits (15), Expect = 3.3
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 194 catctcccgggcatgggca 212
||||| |||||||||||||
Sbjct: 739 catctgccgggcatgggca 721
>ISRsp5
Length = 1320
Score = 30.2 bits (15), Expect = 3.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 433 cggcagtgccgccgc 447
|||||||||||||||
Sbjct: 969 cggcagtgccgccgc 983
>IS692
Length = 2563
Score = 30.2 bits (15), Expect = 3.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 625 ggggtgccggctcgt 639
|||||||||||||||
Sbjct: 918 ggggtgccggctcgt 904
>ISMsi2
Length = 1332
Score = 30.2 bits (15), Expect = 3.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 510 acctggatggccagg 524
|||||||||||||||
Sbjct: 844 acctggatggccagg 830
>ISVer2
Length = 1231
Score = 30.2 bits (15), Expect = 3.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 618 atgccatggggtgcc 632
|||||||||||||||
Sbjct: 590 atgccatggggtgcc 604
>ISCARN81
Length = 1406
Score = 30.2 bits (15), Expect = 3.3
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 476 cagtgtgggtgtggtggag 494
|||| ||||||||||||||
Sbjct: 127 cagtctgggtgtggtggag 145
>ISCARN22
Length = 2674
Score = 30.2 bits (15), Expect = 3.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 261 ctgatcctgccctgg 275
|||||||||||||||
Sbjct: 2351 ctgatcctgccctgg 2365
>ISSsp5
Length = 2501
Score = 30.2 bits (15), Expect = 3.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 189 acgaacatctcccgg 203
|||||||||||||||
Sbjct: 464 acgaacatctcccgg 450
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_59_length_617_cov_0.740741_ID_5290
(617 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISMex38 | Tn3 | Methylobacterium extorquens | 44 | 2e-04 | |
| ISHth1 | ISH6 | Halococcus thailandensis | 32 | 0.80 | |
| ISShes11 | Tn3 | Shewanella sp. | 32 | 0.80 | |
| ISH8C | IS4 | ISH8 | Halobacterium sp | 32 | 0.80 |
| ISHli6 | IS1595 | ISH4 | Halohasta litchfieldiae | 30 | 3.2 |
| ISHla12 | IS1595 | ISH4 | Halorubrum lacusprofundi | 30 | 3.2 |
| ISHsa1 | ISH6 | Halococcus salifodinae | 30 | 3.2 | |
| ISNamo5 | IS701 | Natronomonas moolapensis | 30 | 3.2 | |
| ISMmu1 | IS200/IS605 | Mitsuokella multacida | 30 | 3.2 | |
| ISPna4 | IS5 | IS903 | Polaromonas naphthalenivorans | 30 | 3.2 |
| ISHwa9 | IS4 | IS4Sa | Haloquadratum walsbyi | 30 | 3.2 |
| ISAba10 | IS5 | IS903 | Acinetobacter baumannii | 30 | 3.2 |
| ISRhsp5 | IS66 | Rhodobacter sphaeroides | 30 | 3.2 | |
| ISSpwi1 | IS3 | IS407 | Sphingomonas wittichii | 30 | 3.2 |
| ISFsp5 | IS4 | IS4 | Frankia sp. | 30 | 3.2 |
| IS869 | IS5 | IS427 | Agrobacterium tumefaciens | 30 | 3.2 |
>ISMex38
Length = 3841
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 282 gcgcaacgcggccatcaccgcg 303
||||||||||||||||||||||
Sbjct: 1266 gcgcaacgcggccatcaccgcg 1245
>ISHth1
Length = 1445
Score = 32.2 bits (16), Expect = 0.80
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 226 ctggcgacggcatcga 241
||||||||||||||||
Sbjct: 545 ctggcgacggcatcga 530
>ISShes11
Length = 7669
Score = 32.2 bits (16), Expect = 0.80
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 521 aaaccaggtgagcgca 536
||||||||||||||||
Sbjct: 1550 aaaccaggtgagcgca 1565
>ISH8C
Length = 1403
Score = 32.2 bits (16), Expect = 0.80
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 332 cgacctctacgtcgat 347
||||||||||||||||
Sbjct: 854 cgacctctacgtcgat 839
>ISHli6
Length = 1046
Score = 30.2 bits (15), Expect = 3.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 603 gctcgatggccgcat 617
|||||||||||||||
Sbjct: 163 gctcgatggccgcat 149
>ISHla12
Length = 1046
Score = 30.2 bits (15), Expect = 3.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 603 gctcgatggccgcat 617
|||||||||||||||
Sbjct: 163 gctcgatggccgcat 149
>ISHsa1
Length = 1467
Score = 30.2 bits (15), Expect = 3.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 152 cgacgggttcgaggt 166
|||||||||||||||
Sbjct: 1202 cgacgggttcgaggt 1216
>ISNamo5
Length = 1277
Score = 30.2 bits (15), Expect = 3.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 488 ttcgccatcgcatcc 502
|||||||||||||||
Sbjct: 953 ttcgccatcgcatcc 939
>ISMmu1
Length = 2023
Score = 30.2 bits (15), Expect = 3.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 272 gctgcgcgatgcgca 286
|||||||||||||||
Sbjct: 329 gctgcgcgatgcgca 343
>ISPna4
Length = 1093
Score = 30.2 bits (15), Expect = 3.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 282 gcgcaacgcggccat 296
|||||||||||||||
Sbjct: 805 gcgcaacgcggccat 819
>ISHwa9
Length = 1511
Score = 30.2 bits (15), Expect = 3.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 114 acacggcaggttcgt 128
|||||||||||||||
Sbjct: 912 acacggcaggttcgt 926
>ISAba10
Length = 1023
Score = 30.2 bits (15), Expect = 3.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 372 cattttctgcccata 386
|||||||||||||||
Sbjct: 726 cattttctgcccata 712
>ISRhsp5
Length = 2528
Score = 30.2 bits (15), Expect = 3.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 514 gtgggcgaaaccagg 528
|||||||||||||||
Sbjct: 1324 gtgggcgaaaccagg 1338
>ISSpwi1
Length = 1269
Score = 30.2 bits (15), Expect = 3.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 270 ttgctgcgcgatgcg 284
|||||||||||||||
Sbjct: 546 ttgctgcgcgatgcg 560
>ISFsp5
Length = 1617
Score = 30.2 bits (15), Expect = 3.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 171 catgttgtagaagct 185
|||||||||||||||
Sbjct: 109 catgttgtagaagct 95
>IS869
Length = 849
Score = 30.2 bits (15), Expect = 3.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 485 cctttcgccatcgca 499
|||||||||||||||
Sbjct: 289 cctttcgccatcgca 275
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_60_length_607_cov_1.91698_ID_5292
(607 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISCARN29 | IS1595 | ISPna2 | Metagenomic data from CARNOULES | 36 | 0.051 |
| ISMysp7 | IS256 | Mycobacterium sp. | 34 | 0.20 | |
| ISTni2 | IS481 | Thioalkalivibrio nitratireducens | 32 | 0.79 | |
| ISDku1 | IS256 | Desulfotomaculum kuznetsovii | 32 | 0.79 | |
| ISAar42 | ISL3 | Arthrobacter arilaitensis | 32 | 0.79 | |
| ISSav7 | IS481 | Streptomyces avermitilis | 32 | 0.79 | |
| ISMlu1 | IS256 | Micrococcus luteus | 32 | 0.79 | |
| ISHne5 | IS110 | Hyphomonas neptunium | 32 | 0.79 | |
| IS1373 | IS5 | ISL2 | Streptomyces lividans | 32 | 0.79 |
| TnAs3 | Tn3 | Aeromonas salmonicida | 30 | 3.1 | |
| ISNpe11 | IS200/IS605 | IS1341 | Natrinema pellirubrum | 30 | 3.1 |
| ISAzs28 | IS5 | IS1031 | Azospirillum sp. | 30 | 3.1 |
| ISRm17 | ISNCY | ISDol1 | Sinorhizobium meliloti | 30 | 3.1 |
| ISPaen2 | IS5 | IS5 | Paenibacillus sp. | 30 | 3.1 |
| ISMno30 | ISL3 | Methylobacterium nodulans | 30 | 3.1 | |
| ISArsp6 | Tn3 | Arthrobacter sp. | 30 | 3.1 | |
| ISDeac1 | IS1380 | Delftia acidovorans | 30 | 3.1 | |
| ISMsi5 | IS3 | IS3 | Methylocella silvestris | 30 | 3.1 |
| ISMsi3 | IS3 | IS407 | Methylocella silvestris | 30 | 3.1 |
| ISMex22 | Tn3 | Methylobacterium extorquens | 30 | 3.1 | |
| ISAzo23 | IS5 | IS1031 | Azoarcus sp. | 30 | 3.1 |
| ISXau4 | IS66 | Xanthobacter autotrophicus | 30 | 3.1 | |
| ISAzca2 | IS66 | Azorhizobium caulinodans | 30 | 3.1 | |
| ISAli14 | ISAs1 | Azospirillum lipoferum | 30 | 3.1 | |
| ISAli13 | IS21 | Azospirillum lipoferum | 30 | 3.1 | |
| ISNisp5 | IS1 | ISMhu11 | Nitrobacter sp. | 30 | 3.1 |
| ISBrsp1 | IS3 | IS407 | Bradyrhizobium sp. | 30 | 3.1 |
>ISCARN29
Length = 1044
Score = 36.2 bits (18), Expect = 0.051
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 463 gggcgtcatcggcctggccggc 484
||||||| ||||||||||||||
Sbjct: 705 gggcgtcctcggcctggccggc 684
>ISMysp7
Length = 1397
Score = 34.2 bits (17), Expect = 0.20
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 41 cgcagcgcggtggccat 57
|||||||||||||||||
Sbjct: 966 cgcagcgcggtggccat 950
>ISTni2
Length = 3451
Score = 32.2 bits (16), Expect = 0.79
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 403 gcgcggcctgccgcgg 418
||||||||||||||||
Sbjct: 1520 gcgcggcctgccgcgg 1535
>ISDku1
Length = 1486
Score = 32.2 bits (16), Expect = 0.79
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 384 aggcggtaaaggccaa 399
||||||||||||||||
Sbjct: 948 aggcggtaaaggccaa 933
>ISAar42
Length = 1443
Score = 32.2 bits (16), Expect = 0.79
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 265 gggcgcggccgccttc 280
||||||||||||||||
Sbjct: 426 gggcgcggccgccttc 411
>ISSav7
Length = 2992
Score = 32.2 bits (16), Expect = 0.79
Identities = 22/24 (91%)
Strand = Plus / Plus
Query: 486 cgctggccttcgtcaccgtcgccg 509
|||||| ||||| |||||||||||
Sbjct: 1604 cgctggacttcgacaccgtcgccg 1627
>ISMlu1
Length = 1413
Score = 32.2 bits (16), Expect = 0.79
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 100 cgcgtcggcggccacg 115
||||||||||||||||
Sbjct: 623 cgcgtcggcggccacg 608
>ISHne5
Length = 1182
Score = 32.2 bits (16), Expect = 0.79
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 262 catgggcgcggccgcc 277
||||||||||||||||
Sbjct: 967 catgggcgcggccgcc 952
>IS1373
Length = 817
Score = 32.2 bits (16), Expect = 0.79
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 407 ggcctgccgcggcgcc 422
||||||||||||||||
Sbjct: 543 ggcctgccgcggcgcc 558
>TnAs3
Length = 18735
Score = 30.2 bits (15), Expect = 3.1
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 129 gctcgtcgatcacca 143
|||||||||||||||
Sbjct: 6916 gctcgtcgatcacca 6902
>ISNpe11
Length = 1613
Score = 30.2 bits (15), Expect = 3.1
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 95 gtggtcgcgtcggcg 109
|||||||||||||||
Sbjct: 1052 gtggtcgcgtcggcg 1038
>ISAzs28
Length = 1055
Score = 30.2 bits (15), Expect = 3.1
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 61 cggccatttacgcgg 75
|||||||||||||||
Sbjct: 341 cggccatttacgcgg 327
>ISRm17
Length = 1664
Score = 30.2 bits (15), Expect = 3.1
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 408 gcctgccgcggcgcc 422
|||||||||||||||
Sbjct: 1174 gcctgccgcggcgcc 1160
>ISPaen2
Length = 1786
Score = 30.2 bits (15), Expect = 3.1
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 385 ggcggtaaaggccaa 399
|||||||||||||||
Sbjct: 586 ggcggtaaaggccaa 600
>ISMno30
Length = 1773
Score = 30.2 bits (15), Expect = 3.1
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 99 tcgcgtcggcggcca 113
|||||||||||||||
Sbjct: 165 tcgcgtcggcggcca 151
>ISArsp6
Length = 26712
Score = 30.2 bits (15), Expect = 3.1
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 409 cctgccgcggcgcca 423
|||||||||||||||
Sbjct: 6194 cctgccgcggcgcca 6180
>ISDeac1
Length = 1736
Score = 30.2 bits (15), Expect = 3.1
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 471 tcggcctggccggca 485
|||||||||||||||
Sbjct: 868 tcggcctggccggca 882
>ISMsi5
Length = 1228
Score = 30.2 bits (15), Expect = 3.1
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 406 cggcctgccgcggcg 420
|||||||||||||||
Sbjct: 721 cggcctgccgcggcg 707
>ISMsi3
Length = 1107
Score = 30.2 bits (15), Expect = 3.1
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 471 tcggcctggccggcacgct 489
|||||||||||| ||||||
Sbjct: 480 tcggcctggccgccacgct 462
>ISMex22
Length = 3864
Score = 30.2 bits (15), Expect = 3.1
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 199 ggccgagaaggccgc 213
|||||||||||||||
Sbjct: 2412 ggccgagaaggccgc 2426
>ISAzo23
Length = 871
Score = 30.2 bits (15), Expect = 3.1
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 81 cggccaaggcggcgg 95
|||||||||||||||
Sbjct: 623 cggccaaggcggcgg 637
>ISXau4
Length = 2458
Score = 30.2 bits (15), Expect = 3.1
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 198 cggccgagaaggccg 212
|||||||||||||||
Sbjct: 1139 cggccgagaaggccg 1153
>ISAzca2
Length = 2458
Score = 30.2 bits (15), Expect = 3.1
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 198 cggccgagaaggccg 212
|||||||||||||||
Sbjct: 1139 cggccgagaaggccg 1153
>ISAli14
Length = 1267
Score = 30.2 bits (15), Expect = 3.1
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 385 ggcggtaaaggccaa 399
|||||||||||||||
Sbjct: 706 ggcggtaaaggccaa 720
>ISAli13
Length = 2756
Score = 30.2 bits (15), Expect = 3.1
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 497 gtcaccgtcgccggt 511
|||||||||||||||
Sbjct: 1652 gtcaccgtcgccggt 1638
>ISNisp5
Length = 3580
Score = 30.2 bits (15), Expect = 3.1
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 265 gggcgcggccgcctt 279
|||||||||||||||
Sbjct: 229 gggcgcggccgcctt 215
>ISBrsp1
Length = 1242
Score = 30.2 bits (15), Expect = 3.1
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 531 tgccgcagatctcgt 545
|||||||||||||||
Sbjct: 384 tgccgcagatctcgt 370
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_61_length_518_cov_1.21769_ID_5294
(518 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISThio1 | ISKra4 | ISKra4 | Thiorhodovibrio sp. | 34 | 0.17 |
| ISMae9 | IS1380 | Microcystis aeruginosa | 34 | 0.17 | |
| ISUnCu11 | ISAs1 | Uncultured bacterium | 34 | 0.17 | |
| ISDge11 | IS4 | IS10 | Deinococcus geothermalis | 34 | 0.17 |
| TnXo19 | Tn3 | Xanthomonas oryzae | 32 | 0.67 | |
| ISNtsp1 | IS5 | IS5 | Nitrosomonas sp. | 32 | 0.67 |
| ISMav8 | IS1380 | Mycobacterium avium | 32 | 0.67 | |
| ISMex38 | Tn3 | Methylobacterium extorquens | 32 | 0.67 | |
| ISKpn4 | IS110 | IS1111 | Klebsiella pneumoniae | 32 | 0.67 |
| ISPa21 | IS110 | IS1111 | Pseudomonas aeruginosa | 32 | 0.67 |
| ISRm1 | IS3 | IS2 | Rhizobium meliloti | 32 | 0.67 |
| IS902 | IS110 | - | Mycobacterium avium | 32 | 0.67 |
| ISPsp7 | IS30 | Pseudomonas sp. | 30 | 2.6 | |
| ISPa43 | Tn3 | Pseudomonas aeruginosa | 30 | 2.6 | |
| ISAtsp2 | IS1634 | Arthrospira sp. | 30 | 2.6 | |
| ISClce1 | IS982 | Clostridium cellulovorans | 30 | 2.6 | |
| ISAde5 | IS256 | Anaeromyxobacter dehalogenans | 30 | 2.6 | |
| ISMdi2 | ISL3 | Methylobacterium dichloromethanicum | 30 | 2.6 | |
| ISCARN99 | IS21 | Metagenomic data from CARNOULES | 30 | 2.6 | |
| ISUnCu4 | IS30 | Plasmid QKH54 | 30 | 2.6 | |
| ISRta4 | IS110 | Ralstonia taiwanensis | 30 | 2.6 | |
| ISKpn6 | IS1182 | Klebsiella pneumoniae | 30 | 2.6 | |
| ISPst6 | IS110 | IS1111 | Pseudomonas stutzeri | 30 | 2.6 |
| ISPsy7 | IS110 | IS1111 | Pseudomonas syringae | 30 | 2.6 |
| ISPst1 | IS30 | - | Pseudomonas stutzeri | 30 | 2.6 |
| ISMt1 | IS5 | IS427 | Mycobacterium tuberculosis | 30 | 2.6 |
| IS3502 | IS3 | IS51 | Corynebacterium jeikeium | 30 | 2.6 |
| IS1SD | IS1 | - | Shigella dysenteriae | 30 | 2.6 |
| IS1S | IS1 | - | Shigella sonnei | 30 | 2.6 |
| IS1R | IS1 | - | Escherichia coli | 30 | 2.6 |
| IS1G | IS1 | - | Escherichia coli | 30 | 2.6 |
| IS1D | IS1 | - | Escherichia coli | 30 | 2.6 |
| IS1B | IS1 | - | Escherichia coli | 30 | 2.6 |
| IS1A | IS1 | - | Escherichia coli | 30 | 2.6 |
>ISThio1
Length = 1756
Score = 34.2 bits (17), Expect = 0.17
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 128 ccgccggcttgttcgag 144
|||||||||||||||||
Sbjct: 622 ccgccggcttgttcgag 606
>ISMae9
Length = 1988
Score = 34.2 bits (17), Expect = 0.17
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 494 atagtcttaaaaatggc 510
|||||||||||||||||
Sbjct: 1780 atagtcttaaaaatggc 1796
>ISUnCu11
Length = 1223
Score = 34.2 bits (17), Expect = 0.17
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 217 gttctcttgcgccagtt 233
|||||||||||||||||
Sbjct: 728 gttctcttgcgccagtt 712
>ISDge11
Length = 1176
Score = 34.2 bits (17), Expect = 0.17
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 432 cctgcaaggtcaggggcaaca 452
||||| |||||||||||||||
Sbjct: 465 cctgccaggtcaggggcaaca 445
>TnXo19
Length = 18767
Score = 32.2 bits (16), Expect = 0.67
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 144 ggtcgacgcgacggcc 159
||||||||||||||||
Sbjct: 3418 ggtcgacgcgacggcc 3433
>ISNtsp1
Length = 1497
Score = 32.2 bits (16), Expect = 0.67
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 224 tgcgccagttgcacca 239
||||||||||||||||
Sbjct: 219 tgcgccagttgcacca 204
>ISMav8
Length = 2064
Score = 32.2 bits (16), Expect = 0.67
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 419 tcggcgggcacggcctgcaa 438
|||||||||||| |||||||
Sbjct: 2035 tcggcgggcacgacctgcaa 2016
>ISMex38
Length = 3841
Score = 32.2 bits (16), Expect = 0.67
Identities = 25/28 (89%)
Strand = Plus / Plus
Query: 16 cggctgaagcgcatcgcccggcaactcg 43
|||||||||||| ||| |||||| ||||
Sbjct: 2380 cggctgaagcgcctcggccggcatctcg 2407
>ISKpn4
Length = 1377
Score = 32.2 bits (16), Expect = 0.67
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 352 ggcatgccagcgcgcc 367
||||||||||||||||
Sbjct: 678 ggcatgccagcgcgcc 663
>ISPa21
Length = 1364
Score = 32.2 bits (16), Expect = 0.67
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 352 ggcatgccagcgcgcc 367
||||||||||||||||
Sbjct: 672 ggcatgccagcgcgcc 657
>ISRm1
Length = 1319
Score = 32.2 bits (16), Expect = 0.67
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 331 ctcctcttcggcggcc 346
||||||||||||||||
Sbjct: 289 ctcctcttcggcggcc 274
>IS902
Length = 1470
Score = 32.2 bits (16), Expect = 0.67
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 41 tcgccgacaaggcgct 56
||||||||||||||||
Sbjct: 863 tcgccgacaaggcgct 878
>ISPsp7
Length = 1113
Score = 30.2 bits (15), Expect = 2.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 171 tggcgcgctcttcaa 185
|||||||||||||||
Sbjct: 92 tggcgcgctcttcaa 78
>ISPa43
Length = 19903
Score = 30.2 bits (15), Expect = 2.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 162 cgccagcgctggcgc 176
|||||||||||||||
Sbjct: 17125 cgccagcgctggcgc 17111
>ISAtsp2
Length = 1761
Score = 30.2 bits (15), Expect = 2.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 162 cgccagcgctggcgc 176
|||||||||||||||
Sbjct: 966 cgccagcgctggcgc 952
Score = 30.2 bits (15), Expect = 2.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 162 cgccagcgctggcgc 176
|||||||||||||||
Sbjct: 953 cgccagcgctggcgc 967
>ISClce1
Length = 1157
Score = 30.2 bits (15), Expect = 2.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 21 gaagcgcatcgcccg 35
|||||||||||||||
Sbjct: 578 gaagcgcatcgcccg 564
>ISAde5
Length = 1270
Score = 30.2 bits (15), Expect = 2.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 213 ggaagttctcttgcg 227
|||||||||||||||
Sbjct: 107 ggaagttctcttgcg 93
>ISMdi2
Length = 1689
Score = 30.2 bits (15), Expect = 2.6
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 375 cggggttgctgaccaccgc 393
|||||||||||| ||||||
Sbjct: 145 cggggttgctgatcaccgc 163
>ISCARN99
Length = 2192
Score = 30.2 bits (15), Expect = 2.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 381 tgctgaccaccgcac 395
|||||||||||||||
Sbjct: 1609 tgctgaccaccgcac 1623
>ISUnCu4
Length = 1113
Score = 30.2 bits (15), Expect = 2.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 171 tggcgcgctcttcaa 185
|||||||||||||||
Sbjct: 92 tggcgcgctcttcaa 78
>ISRta4
Length = 1915
Score = 30.2 bits (15), Expect = 2.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 455 gcgagcgcagcgacg 469
|||||||||||||||
Sbjct: 114 gcgagcgcagcgacg 128
>ISKpn6
Length = 1540
Score = 30.2 bits (15), Expect = 2.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 225 gcgccagttgcacca 239
|||||||||||||||
Sbjct: 437 gcgccagttgcacca 423
>ISPst6
Length = 1371
Score = 30.2 bits (15), Expect = 2.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 353 gcatgccagcgcgcc 367
|||||||||||||||
Sbjct: 677 gcatgccagcgcgcc 663
>ISPsy7
Length = 1348
Score = 30.2 bits (15), Expect = 2.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 221 tcttgcgccagttgc 235
|||||||||||||||
Sbjct: 707 tcttgcgccagttgc 693
>ISPst1
Length = 1113
Score = 30.2 bits (15), Expect = 2.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 171 tggcgcgctcttcaa 185
|||||||||||||||
Sbjct: 92 tggcgcgctcttcaa 78
>ISMt1
Length = 969
Score = 30.2 bits (15), Expect = 2.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 39 actcgccgacaaggc 53
|||||||||||||||
Sbjct: 652 actcgccgacaaggc 666
>IS3502
Length = 1328
Score = 30.2 bits (15), Expect = 2.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 22 aagcgcatcgcccgg 36
|||||||||||||||
Sbjct: 644 aagcgcatcgcccgg 658
>IS1SD
Length = 768
Score = 30.2 bits (15), Expect = 2.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 163 gccagcgctggcgcg 177
|||||||||||||||
Sbjct: 424 gccagcgctggcgcg 410
>IS1S
Length = 768
Score = 30.2 bits (15), Expect = 2.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 163 gccagcgctggcgcg 177
|||||||||||||||
Sbjct: 424 gccagcgctggcgcg 410
>IS1R
Length = 768
Score = 30.2 bits (15), Expect = 2.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 163 gccagcgctggcgcg 177
|||||||||||||||
Sbjct: 424 gccagcgctggcgcg 410
>IS1G
Length = 768
Score = 30.2 bits (15), Expect = 2.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 163 gccagcgctggcgcg 177
|||||||||||||||
Sbjct: 424 gccagcgctggcgcg 410
>IS1D
Length = 768
Score = 30.2 bits (15), Expect = 2.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 163 gccagcgctggcgcg 177
|||||||||||||||
Sbjct: 424 gccagcgctggcgcg 410
>IS1B
Length = 768
Score = 30.2 bits (15), Expect = 2.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 163 gccagcgctggcgcg 177
|||||||||||||||
Sbjct: 424 gccagcgctggcgcg 410
>IS1A
Length = 768
Score = 30.2 bits (15), Expect = 2.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 163 gccagcgctggcgcg 177
|||||||||||||||
Sbjct: 424 gccagcgctggcgcg 410
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_62_length_516_cov_0.840547_ID_5296
(516 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISAzo41 | IS5 | IS5 | Azoarcus sp. | 38 | 0.011 |
| ISFsp11 | IS66 | ISBst12 | Frankia sp. | 36 | 0.043 |
| ISXc4 | Tn3 | - | Xanthomonas campestris | 36 | 0.043 |
| ISPa38 | Tn3 | Pseudomonas aeruginosa | 34 | 0.17 | |
| IS481v2 | IS481 | - | Bordetella pertussis | 34 | 0.17 |
| IS481v1 | IS481 | - | Bordetella pertussis | 34 | 0.17 |
| IS481 | IS481 | Bordetella pertussis | 34 | 0.17 | |
| IS1538 | IS607 | Mycobacterium tuberculosis | 34 | 0.17 | |
| ISRsp12 | Tn3 | Rhizhobium sp. | 32 | 0.67 | |
| TnAs2 | Tn3 | Aeromonas salmonicida | 32 | 0.67 | |
| ISStsp9 | IS5 | IS427 | Streptomyces sp. | 32 | 0.67 |
| ISGdi14 | IS3 | IS51 | Gluconacetobacter diazotrophicus | 32 | 0.67 |
| ISDra3 | IS630 | Deinococcus radiodurans | 32 | 0.67 | |
| ISAeme11 | IS701 | ISAba11 | Aeromonas media | 30 | 2.6 |
| ISTdr1 | IS256 | Thiorhodococcus drewsii | 30 | 2.6 | |
| ISAzs36 | IS481 | Azospirillum sp. | 30 | 2.6 | |
| ISAzs29 | Tn3 | Azospirillum sp. | 30 | 2.6 | |
| ISAzs18 | IS66 | Azospirillum sp. | 30 | 2.6 | |
| ISStsp7 | IS5 | ISL2 | Streptomyces sp | 30 | 2.6 |
| ISStsp6 | IS5 | ISL2 | Streptomyces sp | 30 | 2.6 |
| ISMgi3 | IS1182 | Mycobacterium gilvum | 30 | 2.6 | |
| ISAcsp1 | Tn3 | Acinetobacter sp. | 30 | 2.6 | |
| ISMpo9 | IS701 | Methylobacterium populi | 30 | 2.6 | |
| ISMav7 | IS1380 | Mycobacterium avium | 30 | 2.6 | |
| ISAisp4 | IS110 | Acidovorax sp. | 30 | 2.6 | |
| ISCARN43 | IS1595 | ISPna2 | Metagenomic data from CARNOULES | 30 | 2.6 |
| ISCARN17 | IS21 | Metagenomic data from CARNOULES | 30 | 2.6 | |
| ISThsp3 | IS66 | Thiomonas sp. | 30 | 2.6 | |
| ISNisp5 | IS1 | ISMhu11 | Nitrobacter sp. | 30 | 2.6 |
| ISPpa5 | IS66 | Paracoccus pantotrophus | 30 | 2.6 | |
| IS6120 | IS256 | - | Mycobacterium smegmatis | 30 | 2.6 |
| IS1240 | IS3 | IS3 | Pseudomonas syringae | 30 | 2.6 |
>ISAzo41
Length = 1158
Score = 38.2 bits (19), Expect = 0.011
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 297 catcggccaggcgcgggcg 315
|||||||||||||||||||
Sbjct: 1014 catcggccaggcgcgggcg 1032
>ISFsp11
Length = 1836
Score = 36.2 bits (18), Expect = 0.043
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 113 cgcgcagcacgcgcagcg 130
||||||||||||||||||
Sbjct: 711 cgcgcagcacgcgcagcg 694
>ISXc4
Length = 6938
Score = 36.2 bits (18), Expect = 0.043
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 297 catcggccaggcgcgggc 314
||||||||||||||||||
Sbjct: 4185 catcggccaggcgcgggc 4168
>ISPa38
Length = 6455
Score = 34.2 bits (17), Expect = 0.17
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 294 gcgcatcggccaggcgc 310
|||||||||||||||||
Sbjct: 4448 gcgcatcggccaggcgc 4464
>IS481v2
Length = 1043
Score = 34.2 bits (17), Expect = 0.17
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 290 aagcgcgcatcggccaggcgc 310
|||||||||||| ||||||||
Sbjct: 363 aagcgcgcatcgcccaggcgc 383
>IS481v1
Length = 1043
Score = 34.2 bits (17), Expect = 0.17
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 290 aagcgcgcatcggccaggcgc 310
|||||||||||| ||||||||
Sbjct: 363 aagcgcgcatcgcccaggcgc 383
>IS481
Length = 1043
Score = 34.2 bits (17), Expect = 0.17
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 290 aagcgcgcatcggccaggcgc 310
|||||||||||| ||||||||
Sbjct: 363 aagcgcgcatcgcccaggcgc 383
>IS1538
Length = 2090
Score = 34.2 bits (17), Expect = 0.17
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 114 gcgcagcacgcgcagcg 130
|||||||||||||||||
Sbjct: 873 gcgcagcacgcgcagcg 857
>ISRsp12
Length = 3701
Score = 32.2 bits (16), Expect = 0.67
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 481 gtcggcctcgaactcg 496
||||||||||||||||
Sbjct: 252 gtcggcctcgaactcg 267
>TnAs2
Length = 8650
Score = 32.2 bits (16), Expect = 0.67
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 12 cctcgccctcgccgtcgttg 31
|||||||||||||| |||||
Sbjct: 923 cctcgccctcgccgccgttg 942
Score = 32.2 bits (16), Expect = 0.67
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 295 cgcatcggccaggcgc 310
||||||||||||||||
Sbjct: 6641 cgcatcggccaggcgc 6656
>ISStsp9
Length = 956
Score = 32.2 bits (16), Expect = 0.67
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 482 tcggcctcgaactcgcccac 501
||||||||||||||| ||||
Sbjct: 374 tcggcctcgaactcgaccac 393
>ISGdi14
Length = 1318
Score = 32.2 bits (16), Expect = 0.67
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 92 accagatcggccttggccag 111
||||||||||||| ||||||
Sbjct: 1029 accagatcggcctcggccag 1010
>ISDra3
Length = 1065
Score = 32.2 bits (16), Expect = 0.67
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 107 gccagacgcgcagcac 122
||||||||||||||||
Sbjct: 58 gccagacgcgcagcac 43
>ISAeme11
Length = 1108
Score = 30.2 bits (15), Expect = 2.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 264 gctgcttgcggtcgg 278
|||||||||||||||
Sbjct: 668 gctgcttgcggtcgg 654
>ISTdr1
Length = 1384
Score = 30.2 bits (15), Expect = 2.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 225 agaccacgttggcga 239
|||||||||||||||
Sbjct: 1198 agaccacgttggcga 1212
>ISAzs36
Length = 2622
Score = 30.2 bits (15), Expect = 2.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 1 atcggccaccacctc 15
|||||||||||||||
Sbjct: 2107 atcggccaccacctc 2093
>ISAzs29
Length = 3897
Score = 30.2 bits (15), Expect = 2.6
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 250 gcgggcggccagcggctgc 268
|||||||||||| ||||||
Sbjct: 2876 gcgggcggccaggggctgc 2858
>ISAzs18
Length = 2633
Score = 30.2 bits (15), Expect = 2.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 111 gacgcgcagcacgcg 125
|||||||||||||||
Sbjct: 476 gacgcgcagcacgcg 462
>ISStsp7
Length = 976
Score = 30.2 bits (15), Expect = 2.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 11 acctcgccctcgccg 25
|||||||||||||||
Sbjct: 893 acctcgccctcgccg 907
>ISStsp6
Length = 1476
Score = 30.2 bits (15), Expect = 2.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 11 acctcgccctcgccg 25
|||||||||||||||
Sbjct: 1390 acctcgccctcgccg 1404
>ISMgi3
Length = 1770
Score = 30.2 bits (15), Expect = 2.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 5 gccaccacctcgccc 19
|||||||||||||||
Sbjct: 611 gccaccacctcgccc 597
>ISAcsp1
Length = 3736
Score = 30.2 bits (15), Expect = 2.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 72 attcaccgaccatgt 86
|||||||||||||||
Sbjct: 3004 attcaccgaccatgt 3018
>ISMpo9
Length = 1413
Score = 30.2 bits (15), Expect = 2.6
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 250 gcgggcggccagcggctgc 268
||||||||||| |||||||
Sbjct: 222 gcgggcggccatcggctgc 204
>ISMav7
Length = 1691
Score = 30.2 bits (15), Expect = 2.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 88 ggtgaccagatcggc 102
|||||||||||||||
Sbjct: 1330 ggtgaccagatcggc 1316
>ISAisp4
Length = 1614
Score = 30.2 bits (15), Expect = 2.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 97 atcggccttggccag 111
|||||||||||||||
Sbjct: 1551 atcggccttggccag 1565
>ISCARN43
Length = 1086
Score = 30.2 bits (15), Expect = 2.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 142 agcaccgagtcgcgc 156
|||||||||||||||
Sbjct: 744 agcaccgagtcgcgc 730
>ISCARN17
Length = 2539
Score = 30.2 bits (15), Expect = 2.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 2 tcggccaccacctcg 16
|||||||||||||||
Sbjct: 870 tcggccaccacctcg 856
>ISThsp3
Length = 2455
Score = 30.2 bits (15), Expect = 2.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 98 tcggccttggccaga 112
|||||||||||||||
Sbjct: 2074 tcggccttggccaga 2060
>ISNisp5
Length = 3580
Score = 30.2 bits (15), Expect = 2.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 36 cgtagtagcggccca 50
|||||||||||||||
Sbjct: 736 cgtagtagcggccca 722
>ISPpa5
Length = 2829
Score = 30.2 bits (15), Expect = 2.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 293 cgcgcatcggccagg 307
|||||||||||||||
Sbjct: 723 cgcgcatcggccagg 709
>IS6120
Length = 1486
Score = 30.2 bits (15), Expect = 2.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 478 gaagtcggcctcgaa 492
|||||||||||||||
Sbjct: 1078 gaagtcggcctcgaa 1064
>IS1240
Length = 1668
Score = 30.2 bits (15), Expect = 2.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 298 atcggccaggcgcgg 312
|||||||||||||||
Sbjct: 860 atcggccaggcgcgg 846
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_63_length_489_cov_0.883495_ID_5298
(489 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| TnXo19 | Tn3 | Xanthomonas oryzae | 32 | 0.63 | |
| ISPa59 | IS30 | Pseudomonas aeruginosa | 32 | 0.63 | |
| ISNpe24 | IS66 | ISBst12 | Natrinema pellirubrum | 32 | 0.63 |
| ISCysp24 | ISKra4 | ISMich2 | Cyanothece sp. | 32 | 0.63 |
| ISPa29 | IS110 | IS1111 | Pseudomonas aeruginosa | 32 | 0.63 |
| ISPsp4 | IS30 | Pseudomonas sp. | 32 | 0.63 | |
| ISFsp8 | IS3 | IS3 | Frankia sp. | 32 | 0.63 |
| ISTha3 | IS91 | Thauera sp. | 30 | 2.5 | |
| TnShfr1 | Tn3 | Shewanella frigidimarina | 30 | 2.5 | |
| ISPsp7 | IS30 | Pseudomonas sp. | 30 | 2.5 | |
| ISNpe14 | IS5 | ISH1 | Natrinema pellirubrum | 30 | 2.5 |
| ISMafe1 | IS5 | IS5 | Mariprofundus ferrooxydans | 30 | 2.5 |
| ISMex4 | IS1380 | Methylobacterium extorquens | 30 | 2.5 | |
| ISPst10 | IS30 | Pseudomonas stutzeri | 30 | 2.5 | |
| ISUnCu4 | IS30 | Plasmid QKH54 | 30 | 2.5 | |
| ISHne4 | IS110 | Hyphomonas neptunium | 30 | 2.5 | |
| ISBmu3 | IS21 | Burkholderia multivorans | 30 | 2.5 | |
| ISRj2 | IS3 | IS150 | Bradyrhizobium japonicum | 30 | 2.5 |
| ISPsy34 | IS66 | Pseudomonas syringae | 28 | 9.9 | |
| ISRtr5 | IS66 | Rhizobium tropici | 28 | 9.9 | |
| ISPsme1 | IS30 | Pseudomonas mendocina | 28 | 9.9 | |
| ISBj5 | IS630 | Bradyrhizobium japonicum | 28 | 9.9 | |
| ISSri1 | ISKra4 | ISKra4 | Streptomyces rimosus | 28 | 9.9 |
| ISAcif1 | ISNCY | ISMae2 | Acidithiobacillus ferrivorans | 28 | 9.9 |
| ISMfu2 | ISKra4 | ISKra4 | Myxococcus fulvus | 28 | 9.9 |
| ISNph9 | IS200/IS605 | IS1341 | Natronomonas pharaonis | 28 | 9.9 |
| ISPa38 | Tn3 | Pseudomonas aeruginosa | 28 | 9.9 | |
| ISMtsp10 | IS1182 | Methylobacterium sp. | 28 | 9.9 | |
| ISBmu30 | IS66 | Burkholderia multivorans | 28 | 9.9 | |
| ISCph1 | IS630 | Chlorobium phaeobacteroides | 28 | 9.9 | |
| ISSpma3 | IS3 | IS407 | Sphingopyxis macrogoltabida | 28 | 9.9 |
| ISMno23 | IS91 | Methylobacterium nodulans | 28 | 9.9 | |
| ISMno18 | IS5 | IS427 | Methylobacterium nodulans | 28 | 9.9 |
| ISArsp6 | Tn3 | Arthrobacter sp. | 28 | 9.9 | |
| ISRop1 | IS1380 | Rhodococcus opacus | 28 | 9.9 | |
| ISFsp14 | IS1380 | Frankia sp. | 28 | 9.9 | |
| ISMsi3 | IS3 | IS407 | Methylocella silvestris | 28 | 9.9 |
| ISAnsp6 | IS1182 | Anaeromyxobacter sp. | 28 | 9.9 | |
| ISThsp19 | IS21 | Thiomonas sp. | 28 | 9.9 | |
| ISThsp14 | ISL3 | Thiomonas sp. | 28 | 9.9 | |
| ISAzo18 | IS3 | IS150 | Azoarcus sp. | 28 | 9.9 |
| ISCARN16 | IS21 | Metagenomic data from CARNOULES | 28 | 9.9 | |
| ISPpu19 | IS66 | Pseudomonas putida | 28 | 9.9 | |
| ISVisp6 | IS110 | IS1111 | Vibrio splendidus | 28 | 9.9 |
| IS1663 | IS110 | Bordetella pertussis | 28 | 9.9 | |
| IS883 | IS66 | Ralstonia eutropha | 28 | 9.9 | |
| ISPsy5 | IS66 | Pseudomonas syringae | 28 | 9.9 | |
| ISPpu2 | IS630 | - | Pseudomonas putida | 28 | 9.9 |
| ISMk1 | ISNCY | - | Mycobacterium kansasii | 28 | 9.9 |
>TnXo19
Length = 18767
Score = 32.2 bits (16), Expect = 0.63
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 314 gcaccagcagcacaaa 329
||||||||||||||||
Sbjct: 660 gcaccagcagcacaaa 645
>ISPa59
Length = 1113
Score = 32.2 bits (16), Expect = 0.63
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 360 gtcgaaggggatcggg 375
||||||||||||||||
Sbjct: 165 gtcgaaggggatcggg 150
>ISNpe24
Length = 1605
Score = 32.2 bits (16), Expect = 0.63
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 270 cagctccgagagcagttgca 289
|||||||||||| |||||||
Sbjct: 251 cagctccgagagaagttgca 270
>ISCysp24
Length = 1170
Score = 32.2 bits (16), Expect = 0.63
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 274 tccgagagcagttgca 289
||||||||||||||||
Sbjct: 186 tccgagagcagttgca 201
>ISPa29
Length = 1534
Score = 32.2 bits (16), Expect = 0.63
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 269 ccagctccgagagcag 284
||||||||||||||||
Sbjct: 571 ccagctccgagagcag 556
>ISPsp4
Length = 1084
Score = 32.2 bits (16), Expect = 0.63
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 359 cgtcgaaggggatcgg 374
||||||||||||||||
Sbjct: 151 cgtcgaaggggatcgg 136
>ISFsp8
Length = 1297
Score = 32.2 bits (16), Expect = 0.63
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 99 cgaccgccgatgtggg 114
||||||||||||||||
Sbjct: 160 cgaccgccgatgtggg 145
>ISTha3
Length = 2424
Score = 30.2 bits (15), Expect = 2.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 210 ggcggcgtcggtggc 224
|||||||||||||||
Sbjct: 1718 ggcggcgtcggtggc 1732
>TnShfr1
Length = 5131
Score = 30.2 bits (15), Expect = 2.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 66 tgcgcttcggtgaca 80
|||||||||||||||
Sbjct: 3231 tgcgcttcggtgaca 3217
>ISPsp7
Length = 1113
Score = 30.2 bits (15), Expect = 2.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 360 gtcgaaggggatcgg 374
|||||||||||||||
Sbjct: 165 gtcgaaggggatcgg 151
>ISNpe14
Length = 1131
Score = 30.2 bits (15), Expect = 2.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 268 gccagctccgagagc 282
|||||||||||||||
Sbjct: 843 gccagctccgagagc 829
>ISMafe1
Length = 1745
Score = 30.2 bits (15), Expect = 2.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 37 ggtggccgaccagat 51
|||||||||||||||
Sbjct: 679 ggtggccgaccagat 693
>ISMex4
Length = 1615
Score = 30.2 bits (15), Expect = 2.5
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 91 ggtcgagacgaccgccgat 109
||||||| |||||||||||
Sbjct: 920 ggtcgagccgaccgccgat 938
>ISPst10
Length = 1113
Score = 30.2 bits (15), Expect = 2.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 360 gtcgaaggggatcgg 374
|||||||||||||||
Sbjct: 165 gtcgaaggggatcgg 151
>ISUnCu4
Length = 1113
Score = 30.2 bits (15), Expect = 2.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 360 gtcgaaggggatcgg 374
|||||||||||||||
Sbjct: 165 gtcgaaggggatcgg 151
>ISHne4
Length = 1166
Score = 30.2 bits (15), Expect = 2.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 208 gcggcggcgtcggtg 222
|||||||||||||||
Sbjct: 524 gcggcggcgtcggtg 510
>ISBmu3
Length = 2697
Score = 30.2 bits (15), Expect = 2.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 310 tcgggcaccagcagc 324
|||||||||||||||
Sbjct: 927 tcgggcaccagcagc 913
Score = 28.2 bits (14), Expect = 9.9
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 273 ctccgagagcagttgcag 290
|||| |||||||||||||
Sbjct: 595 ctcccagagcagttgcag 578
>ISRj2
Length = 1364
Score = 30.2 bits (15), Expect = 2.5
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 259 aacagctgcgccagctccg 277
||||| |||||||||||||
Sbjct: 192 aacagttgcgccagctccg 174
>ISPsy34
Length = 2041
Score = 28.2 bits (14), Expect = 9.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 251 tgtcgctgaacagc 264
||||||||||||||
Sbjct: 1817 tgtcgctgaacagc 1804
>ISRtr5
Length = 2577
Score = 28.2 bits (14), Expect = 9.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 387 gatgaccgcgccgg 400
||||||||||||||
Sbjct: 393 gatgaccgcgccgg 380
>ISPsme1
Length = 1064
Score = 28.2 bits (14), Expect = 9.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 469 agacgctcgcgggc 482
||||||||||||||
Sbjct: 607 agacgctcgcgggc 594
>ISBj5
Length = 1185
Score = 28.2 bits (14), Expect = 9.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 135 agtttctcaaagag 148
||||||||||||||
Sbjct: 798 agtttctcaaagag 811
>ISSri1
Length = 2269
Score = 28.2 bits (14), Expect = 9.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 25 ggatcaggttgagg 38
||||||||||||||
Sbjct: 734 ggatcaggttgagg 721
>ISAcif1
Length = 2464
Score = 28.2 bits (14), Expect = 9.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 118 gctgcaggcgtttg 131
||||||||||||||
Sbjct: 2073 gctgcaggcgtttg 2060
>ISMfu2
Length = 1554
Score = 28.2 bits (14), Expect = 9.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 340 accggtttgccgtc 353
||||||||||||||
Sbjct: 1263 accggtttgccgtc 1250
>ISNph9
Length = 1462
Score = 28.2 bits (14), Expect = 9.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 215 cgtcggtggcttcg 228
||||||||||||||
Sbjct: 400 cgtcggtggcttcg 387
>ISPa38
Length = 6455
Score = 28.2 bits (14), Expect = 9.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 213 ggcgtcggtggctt 226
||||||||||||||
Sbjct: 666 ggcgtcggtggctt 679
Score = 28.2 bits (14), Expect = 9.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 66 tgcgcttcggtgac 79
||||||||||||||
Sbjct: 4558 tgcgcttcggtgac 4545
>ISMtsp10
Length = 1778
Score = 28.2 bits (14), Expect = 9.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 40 ggccgaccagatcg 53
||||||||||||||
Sbjct: 1209 ggccgaccagatcg 1196
>ISBmu30
Length = 2344
Score = 28.2 bits (14), Expect = 9.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 251 tgtcgctgaacagc 264
||||||||||||||
Sbjct: 1968 tgtcgctgaacagc 1955
>ISCph1
Length = 1216
Score = 28.2 bits (14), Expect = 9.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 443 caccctgaccgagg 456
||||||||||||||
Sbjct: 93 caccctgaccgagg 106
>ISSpma3
Length = 1269
Score = 28.2 bits (14), Expect = 9.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 394 gcgccggttgcgtc 407
||||||||||||||
Sbjct: 628 gcgccggttgcgtc 615
>ISMno23
Length = 2271
Score = 28.2 bits (14), Expect = 9.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 476 cgcgggcgaacagg 489
||||||||||||||
Sbjct: 1997 cgcgggcgaacagg 1984
>ISMno18
Length = 864
Score = 28.2 bits (14), Expect = 9.9
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 368 ggatcggggtgctcaggc 385
|||||| |||||||||||
Sbjct: 474 ggatcgtggtgctcaggc 457
>ISArsp6
Length = 26712
Score = 28.2 bits (14), Expect = 9.9
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 258 gaacagctgcgccagctc 275
||||||||||||| ||||
Sbjct: 18164 gaacagctgcgcctgctc 18181
Score = 28.2 bits (14), Expect = 9.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 1 cgaggatctggaag 14
||||||||||||||
Sbjct: 23392 cgaggatctggaag 23379
>ISRop1
Length = 4160
Score = 28.2 bits (14), Expect = 9.9
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 384 gcggatgaccgcgccggt 401
||||||||||||| ||||
Sbjct: 3367 gcggatgaccgcgacggt 3384
>ISFsp14
Length = 1696
Score = 28.2 bits (14), Expect = 9.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 149 ccgcgcgacgctgg 162
||||||||||||||
Sbjct: 1338 ccgcgcgacgctgg 1351
>ISMsi3
Length = 1107
Score = 28.2 bits (14), Expect = 9.9
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 15 cgatcggggtggatcagg 32
||||| ||||||||||||
Sbjct: 876 cgatccgggtggatcagg 893
>ISAnsp6
Length = 1515
Score = 28.2 bits (14), Expect = 9.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 99 cgaccgccgatgtg 112
||||||||||||||
Sbjct: 253 cgaccgccgatgtg 240
>ISThsp19
Length = 2657
Score = 28.2 bits (14), Expect = 9.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 43 cgaccagatcggcc 56
||||||||||||||
Sbjct: 1715 cgaccagatcggcc 1702
>ISThsp14
Length = 1302
Score = 28.2 bits (14), Expect = 9.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 123 aggcgtttgccgag 136
||||||||||||||
Sbjct: 1109 aggcgtttgccgag 1122
>ISAzo18
Length = 1471
Score = 28.2 bits (14), Expect = 9.9
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 258 gaacagctgcgccagctc 275
|||| |||||||||||||
Sbjct: 195 gaactgctgcgccagctc 178
>ISCARN16
Length = 2594
Score = 28.2 bits (14), Expect = 9.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 43 cgaccagatcggcc 56
||||||||||||||
Sbjct: 1709 cgaccagatcggcc 1696
>ISPpu19
Length = 2377
Score = 28.2 bits (14), Expect = 9.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 166 gccgcatgggcagt 179
||||||||||||||
Sbjct: 1201 gccgcatgggcagt 1188
>ISVisp6
Length = 1364
Score = 28.2 bits (14), Expect = 9.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 252 gtcgctgaacagct 265
||||||||||||||
Sbjct: 384 gtcgctgaacagct 371
>IS1663
Length = 1225
Score = 28.2 bits (14), Expect = 9.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 256 ctgaacagctgcgc 269
||||||||||||||
Sbjct: 960 ctgaacagctgcgc 973
>IS883
Length = 2461
Score = 28.2 bits (14), Expect = 9.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 207 tgcggcggcgtcgg 220
||||||||||||||
Sbjct: 381 tgcggcggcgtcgg 368
>ISPsy5
Length = 2059
Score = 28.2 bits (14), Expect = 9.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 251 tgtcgctgaacagc 264
||||||||||||||
Sbjct: 1835 tgtcgctgaacagc 1822
>ISPpu2
Length = 1131
Score = 28.2 bits (14), Expect = 9.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 279 gagcagttgcaggt 292
||||||||||||||
Sbjct: 186 gagcagttgcaggt 199
Score = 28.2 bits (14), Expect = 9.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 57 ggccaagtatgcgc 70
||||||||||||||
Sbjct: 380 ggccaagtatgcgc 393
>ISMk1
Length = 947
Score = 28.2 bits (14), Expect = 9.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 209 cggcggcgtcggtg 222
||||||||||||||
Sbjct: 838 cggcggcgtcggtg 851
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_64_length_475_cov_0.854271_ID_5300
(475 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISMysp1 | IS110 | Mycobacterium sp. | 34 | 0.16 | |
| IS1245 | IS256 | - | Mycobacterium avium | 34 | 0.16 |
| ISNhu3 | IS200/IS605 | IS1341 | Natrialba hulunbeirensis | 32 | 0.61 |
| ISNma15 | IS200/IS605 | IS1341 | Natrialba magadii | 32 | 0.61 |
| ISNma13 | IS200/IS605 | IS1341 | Natrialba magadii | 32 | 0.61 |
| ISAar28 | IS481 | Arthrobacter arilaitensis | 32 | 0.61 | |
| ISNisp3 | IS3 | IS407 | Nitrobacter sp. | 32 | 0.61 |
| ISPosp2 | IS701 | Polaromonas sp. | 32 | 0.61 | |
| ISBrsp1 | IS3 | IS407 | Bradyrhizobium sp. | 32 | 0.61 |
| TnAs3 | Tn3 | Aeromonas salmonicida | 30 | 2.4 | |
| ISAzs32 | IS110 | IS1111 | Azospirillum sp. | 30 | 2.4 |
| ISShes11 | Tn3 | Shewanella sp. | 30 | 2.4 | |
| ISPak1 | IS5 | IS427 | Paracoccus alkenifer | 30 | 2.4 |
| ISAau2 | IS21 | Arthrobacter aurescens | 30 | 2.4 | |
| ISTha1 | ISAs1 | Thauera sp. | 30 | 2.4 | |
| ISRfsp1 | IS66 | ISBst12 | Roseiflexus sp. | 30 | 2.4 |
| ISMca7 | IS5 | IS5 | Methylococcus capsulatus | 30 | 2.4 |
| ISC1250 | IS256 | ISC1250 | Sulfolobus solfataricus | 30 | 2.4 |
| ISSoc1 | IS200/IS605 | IS1341 | Synechococcus sp. | 28 | 9.6 |
| ISPko7 | IS110 | IS1111 | Paracoccus kondratievae | 28 | 9.6 |
| ISPsp6 | IS5 | IS5 | Pseudomonas sp. | 28 | 9.6 |
| ISAzs21 | IS66 | Azospirillum sp. | 28 | 9.6 | |
| ISVa5 | IS66 | Vibrio anguillarum | 28 | 9.6 | |
| ISGeob7 | IS5 | IS427 | Geodermatophilus obscurus | 28 | 9.6 |
| ISRhsp8 | IS5 | IS903 | Rhodobacter sphaeroides | 28 | 9.6 |
| ISPmar2 | IS3 | IS407 | Paracoccus marcusii | 28 | 9.6 |
| ISBmu23 | IS5 | IS5 | Burkholderia multivorans | 28 | 9.6 |
| ISMtsp16 | IS481 | Methylobacterium sp. | 28 | 9.6 | |
| ISArsp5 | IS110 | Arthrobacter sp. | 28 | 9.6 | |
| ISMav6 | IS110 | Mycobacterium avium | 28 | 9.6 | |
| ISAar27 | IS481 | Arthrobacter arilaitensis | 28 | 9.6 | |
| ISMdi27 | IS21 | Methylobacterium dichloromethanicum | 28 | 9.6 | |
| ISMex11 | IS3 | IS407 | Methylobacterium extorquens | 28 | 9.6 |
| ISStma3 | IS481 | Stenotrophomonas maltophilia | 28 | 9.6 | |
| ISRce1 | ISAs1 | Rhodospirillum centenum | 28 | 9.6 | |
| ISMysp6 | IS481 | Mycobacterium sp. | 28 | 9.6 | |
| ISXau4 | IS66 | Xanthobacter autotrophicus | 28 | 9.6 | |
| ISAzca2 | IS66 | Azorhizobium caulinodans | 28 | 9.6 | |
| ISDvu5 | ISL3 | Desulfovibrio vulgaris | 28 | 9.6 | |
| ISRm21 | ISAs1 | Sinorhizobium meliloti | 28 | 9.6 | |
| ISRle3 | IS66 | Rhizobium leguminosarum | 28 | 9.6 | |
| ISGka2 | IS110 | Geobacillus kaustophilus | 28 | 9.6 | |
| ISRl1 | IS66 | - | Rhizobium leguminosarum | 28 | 9.6 |
| ISBp1 | IS3 | IS407 | Burkholderia pseudomallei | 28 | 9.6 |
| ISSme3 | IS66 | Sinorhizobium medicae | 28 | 9.6 | |
| IS1407 | IS256 | - | Mycobacterium celatum | 28 | 9.6 |
| IS1110 | IS110 | - | Mycobacterium avium | 28 | 9.6 |
>ISMysp1
Length = 1461
Score = 34.2 bits (17), Expect = 0.16
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 353 cgggtgatcgccgacca 369
|||||||||||||||||
Sbjct: 562 cgggtgatcgccgacca 578
>IS1245
Length = 1414
Score = 34.2 bits (17), Expect = 0.16
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 194 gaggtgctcgacgtactgcgc 214
||||||||||||| |||||||
Sbjct: 146 gaggtgctcgacgcactgcgc 166
Score = 28.2 bits (14), Expect = 9.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 118 cgccgtgctgatcg 131
||||||||||||||
Sbjct: 844 cgccgtgctgatcg 857
>ISNhu3
Length = 1473
Score = 32.2 bits (16), Expect = 0.61
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 85 ccgccgcatccgcaac 100
||||||||||||||||
Sbjct: 189 ccgccgcatccgcaac 204
>ISNma15
Length = 1475
Score = 32.2 bits (16), Expect = 0.61
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 85 ccgccgcatccgcaac 100
||||||||||||||||
Sbjct: 191 ccgccgcatccgcaac 206
>ISNma13
Length = 1475
Score = 32.2 bits (16), Expect = 0.61
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 85 ccgccgcatccgcaac 100
||||||||||||||||
Sbjct: 191 ccgccgcatccgcaac 206
>ISAar28
Length = 1593
Score = 32.2 bits (16), Expect = 0.61
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 232 ccagggactggtgccc 247
||||||||||||||||
Sbjct: 1041 ccagggactggtgccc 1026
>ISNisp3
Length = 1234
Score = 32.2 bits (16), Expect = 0.61
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 79 cttcagccgccgcatc 94
||||||||||||||||
Sbjct: 252 cttcagccgccgcatc 237
>ISPosp2
Length = 1484
Score = 32.2 bits (16), Expect = 0.61
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 307 ggactggcacgccggactgc 326
|||| |||||||||||||||
Sbjct: 123 ggaccggcacgccggactgc 142
>ISBrsp1
Length = 1242
Score = 32.2 bits (16), Expect = 0.61
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 79 cttcagccgccgcatc 94
||||||||||||||||
Sbjct: 246 cttcagccgccgcatc 231
>TnAs3
Length = 18735
Score = 30.2 bits (15), Expect = 2.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 350 gcacgggtgatcgcc 364
|||||||||||||||
Sbjct: 16253 gcacgggtgatcgcc 16239
>ISAzs32
Length = 1601
Score = 30.2 bits (15), Expect = 2.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 132 accgcagtctcttcc 146
|||||||||||||||
Sbjct: 147 accgcagtctcttcc 133
>ISShes11
Length = 7669
Score = 30.2 bits (15), Expect = 2.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 350 gcacgggtgatcgcc 364
|||||||||||||||
Sbjct: 5187 gcacgggtgatcgcc 5173
>ISPak1
Length = 853
Score = 30.2 bits (15), Expect = 2.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 73 gcccgccttcagccg 87
|||||||||||||||
Sbjct: 99 gcccgccttcagccg 113
>ISAau2
Length = 2222
Score = 30.2 bits (15), Expect = 2.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 373 cgccggctgcgtcga 387
|||||||||||||||
Sbjct: 130 cgccggctgcgtcga 144
>ISTha1
Length = 1301
Score = 30.2 bits (15), Expect = 2.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 118 cgccgtgctgatcga 132
|||||||||||||||
Sbjct: 804 cgccgtgctgatcga 790
>ISRfsp1
Length = 1503
Score = 30.2 bits (15), Expect = 2.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 78 ccttcagccgccgca 92
|||||||||||||||
Sbjct: 1241 ccttcagccgccgca 1227
>ISMca7
Length = 1172
Score = 30.2 bits (15), Expect = 2.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 192 aagaggtgctcgacg 206
|||||||||||||||
Sbjct: 887 aagaggtgctcgacg 873
>ISC1250
Length = 1261
Score = 30.2 bits (15), Expect = 2.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 446 agcctcaccgagatc 460
|||||||||||||||
Sbjct: 422 agcctcaccgagatc 408
>ISSoc1
Length = 1291
Score = 28.2 bits (14), Expect = 9.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 15 tcaccttgtcggtg 28
||||||||||||||
Sbjct: 594 tcaccttgtcggtg 581
>ISPko7
Length = 1140
Score = 28.2 bits (14), Expect = 9.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 452 accgagatcgcccg 465
||||||||||||||
Sbjct: 645 accgagatcgcccg 658
>ISPsp6
Length = 1210
Score = 28.2 bits (14), Expect = 9.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 430 cagccccgcctttc 443
||||||||||||||
Sbjct: 1087 cagccccgcctttc 1074
>ISAzs21
Length = 2598
Score = 28.2 bits (14), Expect = 9.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 64 cgtcacgcagcccg 77
||||||||||||||
Sbjct: 1235 cgtcacgcagcccg 1248
>ISVa5
Length = 2381
Score = 28.2 bits (14), Expect = 9.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 218 ggacgcgaagaagc 231
||||||||||||||
Sbjct: 1836 ggacgcgaagaagc 1849
>ISGeob7
Length = 883
Score = 28.2 bits (14), Expect = 9.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 370 cgtcgccggctgcg 383
||||||||||||||
Sbjct: 650 cgtcgccggctgcg 663
>ISRhsp8
Length = 1054
Score = 28.2 bits (14), Expect = 9.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 453 ccgagatcgcccgc 466
||||||||||||||
Sbjct: 977 ccgagatcgcccgc 990
>ISPmar2
Length = 1269
Score = 28.2 bits (14), Expect = 9.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 124 gctgatcgaccgca 137
||||||||||||||
Sbjct: 174 gctgatcgaccgca 161
>ISBmu23
Length = 1210
Score = 28.2 bits (14), Expect = 9.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 175 cttccgcaaaaccg 188
||||||||||||||
Sbjct: 115 cttccgcaaaaccg 102
>ISMtsp16
Length = 1023
Score = 28.2 bits (14), Expect = 9.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 223 cgaagaagcccagg 236
||||||||||||||
Sbjct: 229 cgaagaagcccagg 242
>ISArsp5
Length = 1426
Score = 28.2 bits (14), Expect = 9.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 448 cctcaccgagatcg 461
||||||||||||||
Sbjct: 1070 cctcaccgagatcg 1083
>ISMav6
Length = 1472
Score = 28.2 bits (14), Expect = 9.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 353 cgggtgatcgccga 366
||||||||||||||
Sbjct: 545 cgggtgatcgccga 558
>ISAar27
Length = 1669
Score = 28.2 bits (14), Expect = 9.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 24 cggtgacgcgcaac 37
||||||||||||||
Sbjct: 680 cggtgacgcgcaac 693
>ISMdi27
Length = 2476
Score = 28.2 bits (14), Expect = 9.6
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 359 atcgccgaccacgtcgcc 376
|||||||||||| |||||
Sbjct: 2059 atcgccgaccacctcgcc 2076
>ISMex11
Length = 1227
Score = 28.2 bits (14), Expect = 9.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 79 cttcagccgccgca 92
||||||||||||||
Sbjct: 250 cttcagccgccgca 237
>ISStma3
Length = 1023
Score = 28.2 bits (14), Expect = 9.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 300 tctttggggactgg 313
||||||||||||||
Sbjct: 77 tctttggggactgg 64
>ISRce1
Length = 1267
Score = 28.2 bits (14), Expect = 9.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 334 gatcggcgcggtcc 347
||||||||||||||
Sbjct: 493 gatcggcgcggtcc 480
>ISMysp6
Length = 1077
Score = 28.2 bits (14), Expect = 9.6
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 119 gccgtgctgatcgaccgc 136
|||| |||||||||||||
Sbjct: 259 gccgggctgatcgaccgc 276
>ISXau4
Length = 2458
Score = 28.2 bits (14), Expect = 9.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 337 cggcgcggtccggg 350
||||||||||||||
Sbjct: 528 cggcgcggtccggg 541
>ISAzca2
Length = 2458
Score = 28.2 bits (14), Expect = 9.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 337 cggcgcggtccggg 350
||||||||||||||
Sbjct: 528 cggcgcggtccggg 541
>ISDvu5
Length = 1357
Score = 28.2 bits (14), Expect = 9.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 19 cttgtcggtgacgc 32
||||||||||||||
Sbjct: 490 cttgtcggtgacgc 477
>ISRm21
Length = 1167
Score = 28.2 bits (14), Expect = 9.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 361 cgccgaccacgtcg 374
||||||||||||||
Sbjct: 706 cgccgaccacgtcg 719
>ISRle3
Length = 2500
Score = 28.2 bits (14), Expect = 9.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 247 ccgcgccggtgaag 260
||||||||||||||
Sbjct: 777 ccgcgccggtgaag 790
>ISGka2
Length = 1561
Score = 28.2 bits (14), Expect = 9.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 271 tgccgcctcgcata 284
||||||||||||||
Sbjct: 317 tgccgcctcgcata 330
>ISRl1
Length = 2495
Score = 28.2 bits (14), Expect = 9.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 247 ccgcgccggtgaag 260
||||||||||||||
Sbjct: 773 ccgcgccggtgaag 786
>ISBp1
Length = 1214
Score = 28.2 bits (14), Expect = 9.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 370 cgtcgccggctgcg 383
||||||||||||||
Sbjct: 658 cgtcgccggctgcg 645
>ISSme3
Length = 3149
Score = 28.2 bits (14), Expect = 9.6
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 285 cgatcgccgtcagtttct 302
|||||||||||| |||||
Sbjct: 1107 cgatcgccgtcattttct 1090
>IS1407
Length = 1422
Score = 28.2 bits (14), Expect = 9.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 113 gtcggcgccgtgct 126
||||||||||||||
Sbjct: 1186 gtcggcgccgtgct 1199
>IS1110
Length = 1462
Score = 28.2 bits (14), Expect = 9.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 350 gcacgggtgatcgc 363
||||||||||||||
Sbjct: 558 gcacgggtgatcgc 571
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_65_length_436_cov_0.665738_ID_5302
(436 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISTha3 | IS91 | Thauera sp. | 34 | 0.14 | |
| ISEc39 | IS256 | Escherichia coli | 34 | 0.14 | |
| ISCap2 | IS5 | IS903 | Candidatus Accumulibacter phosphatis | 32 | 0.56 |
| ISShfr5 | IS21 | Shewanella frigidimarina | 32 | 0.56 | |
| ISSme1 | IS3 | IS407 | Sinorhizobium medicae | 32 | 0.56 |
| ISSfl7 | IS5 | IS427 | Shigella flexneri | 32 | 0.56 |
| ISRm6 | IS3 | IS407 | Rhizobium meliloti | 32 | 0.56 |
| IS1164 | IS256 | - | Rhodococcus rhodochrous | 32 | 0.56 |
| ISMdi15 | IS200/IS605 | IS1341 | Methylobacterium dichloromethanicum | 30 | 2.2 |
| ISAcif1 | ISNCY | ISMae2 | Acidithiobacillus ferrivorans | 30 | 2.2 |
| ISSoEn2 | IS256 | Primary endosymbiont of Sitophilus oryzae | 30 | 2.2 | |
| ISSpma3 | IS3 | IS407 | Sphingopyxis macrogoltabida | 30 | 2.2 |
| ISMno6 | IS6 | Methylobacterium nodulans | 30 | 2.2 | |
| ISAar42 | ISL3 | Arthrobacter arilaitensis | 30 | 2.2 | |
| ISRssp2 | IS1595 | ISNha5 | Roseovarius sp. | 30 | 2.2 |
| ISDge10 | IS200/IS605 | Deinococcus geothermalis | 30 | 2.2 | |
| ISMsm8 | IS30 | Mycobacterium smegmatis | 30 | 2.2 | |
| ISRusp1 | IS5 | IS903 | Ruegeria sp. | 30 | 2.2 |
| ISRpa7 | ISAs1 | Rhodopseudomonas palustris | 30 | 2.2 | |
| ISLxx1 | IS21 | Leifsonia xyli | 30 | 2.2 | |
| ISAfe1 | IS110 | IS1111 | Acidithiobacillus ferroxidans | 30 | 2.2 |
| ISMav2 | IS481 | - | Mycobacterium avium | 30 | 2.2 |
| IS4811 | IS5 | IS1031 | Streptomyces lividans | 30 | 2.2 |
| IS1096 | ISL3 | - | Mycobacterium smegmatis | 30 | 2.2 |
| ISAeme10 | IS1595 | ISPna2 | Aeromonas media | 28 | 8.8 |
| ISHel1 | IS200/IS605 | IS1341 | Haloferax elongans | 28 | 8.8 |
| ISKpn31 | ISAs1 | Klebsiella pneumoniae | 28 | 8.8 | |
| ISHamu1 | IS200/IS605 | IS1341 | Haloferax mucosum | 28 | 8.8 |
| ISNph29 | IS200/IS605 | IS1341 | Natronomonas pharaonis | 28 | 8.8 |
| TnAs1 | Tn3 | Aeromonas salmonicida | 28 | 8.8 | |
| ISCfu1 | ISAzo13 | Cystobacter fuscus | 28 | 8.8 | |
| ISMrh1 | IS256 | Mycobacterium rhodesiae | 28 | 8.8 | |
| ISKpn15 | IS66 | ISBst12 | Klebsiella pneumonia | 28 | 8.8 |
| ISPa36 | IS21 | Pseudomonas aeruginosa | 28 | 8.8 | |
| ISAzs30 | IS21 | Azospirillum sp. | 28 | 8.8 | |
| ISAzs27 | IS30 | Azospirillum sp. | 28 | 8.8 | |
| ISAs12 | ISAs1 | Aeromonas salmonicida | 28 | 8.8 | |
| ISSgr2 | IS5 | ISL2 | Streptomyces griseus | 28 | 8.8 |
| ISNpu1 | IS1182 | Nostoc punctiforme | 28 | 8.8 | |
| ISGvi6 | IS1182 | Gloeobacter violaceus | 28 | 8.8 | |
| ISFsp12 | ISAzo13 | Frankia sp. | 28 | 8.8 | |
| ISArsp6 | Tn3 | Arthrobacter sp. | 28 | 8.8 | |
| ISAzba6 | IS630 | Azospirillum brasilense | 28 | 8.8 | |
| ISAnsp4 | IS21 | Anaeromyxobacter sp. | 28 | 8.8 | |
| ISCth12 | IS21 | Clostridium thermocellum | 28 | 8.8 | |
| ISThsp19 | IS21 | Thiomonas sp. | 28 | 8.8 | |
| ISThsp16 | IS1182 | Thiomonas sp. | 28 | 8.8 | |
| ISSav7 | IS481 | Streptomyces avermitilis | 28 | 8.8 | |
| ISAli3 | IS630 | Azospirillum lipoferum | 28 | 8.8 | |
| ISPa16 | IS5 | IS5 | Pseudomonas aeruginosa | 28 | 8.8 |
| ISHne2 | IS481 | Hyphomonas neptunium | 28 | 8.8 | |
| ISAeca1 | IS30 | Aeromonas caviae | 28 | 8.8 | |
| ISRme15 | IS3 | IS51 | Ralstonia metallidurans | 28 | 8.8 |
| ISGur15 | IS21 | Geobacter uraniumreducens | 28 | 8.8 | |
| ISPca2 | IS3 | IS51 | Pelobacter carbinolicus | 28 | 8.8 |
| ISNha2 | IS701 | Nitrobacter hamburgensis | 28 | 8.8 | |
| ISNha1 | IS701 | Nitrobacter hamburgensis | 28 | 8.8 | |
| ISBj6_B | IS701 | Bradyrhizobium japonicum | 28 | 8.8 | |
| ISSod11 | IS1595 | ISSod11 | Shewanella oneidensis | 28 | 8.8 |
| ISFsp3 | IS21 | Frankia sp. | 28 | 8.8 | |
| ISPpu18 | IS5 | IS5 | Pseudomonas putida | 28 | 8.8 |
| ISEcl1 | IS3 | IS2 | Enterobacter cloacae | 28 | 8.8 |
| IS987 | IS3 | IS51 | Mycobacterium bovis | 28 | 8.8 |
| IS986 | IS3 | IS51 | Mycobacterium tuberculosis | 28 | 8.8 |
| IS6110 | IS3 | IS51 | Mycobacterium tuberculosis | 28 | 8.8 |
| IS1513 | IS30 | - | Corynebacterium striatum | 28 | 8.8 |
| IS1356 | IS256 | - | Burkholderia cepacia | 28 | 8.8 |
| ISSiac3 | ISAzo13 | Singulisphaera acidiphila | 28 | 8.8 |
>ISTha3
Length = 2424
Score = 34.2 bits (17), Expect = 0.14
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 81 gcggccgcctcgaacag 97
|||||||||||||||||
Sbjct: 1965 gcggccgcctcgaacag 1981
>ISEc39
Length = 1315
Score = 34.2 bits (17), Expect = 0.14
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 140 cgagacatcggcgtcgt 156
|||||||||||||||||
Sbjct: 470 cgagacatcggcgtcgt 454
>ISCap2
Length = 1123
Score = 32.2 bits (16), Expect = 0.56
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 361 cgtcgtcatgcagcag 376
||||||||||||||||
Sbjct: 1040 cgtcgtcatgcagcag 1025
>ISShfr5
Length = 2634
Score = 32.2 bits (16), Expect = 0.56
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 106 tcttgtagcgaatcac 121
||||||||||||||||
Sbjct: 1719 tcttgtagcgaatcac 1704
>ISSme1
Length = 1271
Score = 32.2 bits (16), Expect = 0.56
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 185 ttcggcgatggcgctg 200
||||||||||||||||
Sbjct: 1061 ttcggcgatggcgctg 1046
>ISSfl7
Length = 916
Score = 32.2 bits (16), Expect = 0.56
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 320 ggcggttttggcacca 335
||||||||||||||||
Sbjct: 456 ggcggttttggcacca 471
>ISRm6
Length = 1261
Score = 32.2 bits (16), Expect = 0.56
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 185 ttcggcgatggcgctg 200
||||||||||||||||
Sbjct: 1054 ttcggcgatggcgctg 1039
>IS1164
Length = 1430
Score = 32.2 bits (16), Expect = 0.56
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 44 gtcggggctggcgccg 59
||||||||||||||||
Sbjct: 199 gtcggggctggcgccg 184
>ISMdi15
Length = 1344
Score = 30.2 bits (15), Expect = 2.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 68 gccgccaaggcgcgc 82
|||||||||||||||
Sbjct: 830 gccgccaaggcgcgc 844
>ISAcif1
Length = 2464
Score = 30.2 bits (15), Expect = 2.2
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 375 agcgtcgccgtatgaatga 393
||||||||||| |||||||
Sbjct: 42 agcgtcgccgtgtgaatga 60
>ISSoEn2
Length = 1315
Score = 30.2 bits (15), Expect = 2.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 140 cgagacatcggcgtc 154
|||||||||||||||
Sbjct: 471 cgagacatcggcgtc 457
>ISSpma3
Length = 1269
Score = 30.2 bits (15), Expect = 2.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 370 gcagcagcgtcgccg 384
|||||||||||||||
Sbjct: 493 gcagcagcgtcgccg 507
>ISMno6
Length = 816
Score = 30.2 bits (15), Expect = 2.2
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 173 cagcacttcgccttcggcg 191
|||||| ||||||||||||
Sbjct: 369 cagcacctcgccttcggcg 351
>ISAar42
Length = 1443
Score = 30.2 bits (15), Expect = 2.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 82 cggccgcctcgaaca 96
|||||||||||||||
Sbjct: 1311 cggccgcctcgaaca 1325
>ISRssp2
Length = 4633
Score = 30.2 bits (15), Expect = 2.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 171 tgcagcacttcgcct 185
|||||||||||||||
Sbjct: 1610 tgcagcacttcgcct 1596
>ISDge10
Length = 1757
Score = 30.2 bits (15), Expect = 2.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 207 tccgccagcacttcc 221
|||||||||||||||
Sbjct: 276 tccgccagcacttcc 262
>ISMsm8
Length = 1457
Score = 30.2 bits (15), Expect = 2.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 96 agcttggcggtcttg 110
|||||||||||||||
Sbjct: 500 agcttggcggtcttg 486
>ISRusp1
Length = 1051
Score = 30.2 bits (15), Expect = 2.2
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 149 ggcgtcgtgacagttgcgc 167
|||||||||||| ||||||
Sbjct: 683 ggcgtcgtgacacttgcgc 665
>ISRpa7
Length = 1196
Score = 30.2 bits (15), Expect = 2.2
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 83 ggccgcctcgaacagcttg 101
||||||| |||||||||||
Sbjct: 705 ggccgccgcgaacagcttg 687
>ISLxx1
Length = 2205
Score = 30.2 bits (15), Expect = 2.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 304 tgccgaacagggcgt 318
|||||||||||||||
Sbjct: 1280 tgccgaacagggcgt 1266
>ISAfe1
Length = 1424
Score = 30.2 bits (15), Expect = 2.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 341 caaggaggactcgtc 355
|||||||||||||||
Sbjct: 116 caaggaggactcgtc 130
>ISMav2
Length = 1361
Score = 30.2 bits (15), Expect = 2.2
Identities = 21/23 (91%)
Strand = Plus / Minus
Query: 193 tggcgctggtcgcatccgccagc 215
||||||||||| |||| ||||||
Sbjct: 583 tggcgctggtcccatcggccagc 561
>IS4811
Length = 5396
Score = 30.2 bits (15), Expect = 2.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 182 gccttcggcgatggc 196
|||||||||||||||
Sbjct: 3191 gccttcggcgatggc 3205
>IS1096
Length = 2259
Score = 30.2 bits (15), Expect = 2.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 82 cggccgcctcgaaca 96
|||||||||||||||
Sbjct: 1314 cggccgcctcgaaca 1328
>ISAeme10
Length = 1032
Score = 28.2 bits (14), Expect = 8.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 321 gcggttttggcacc 334
||||||||||||||
Sbjct: 695 gcggttttggcacc 708
>ISHel1
Length = 1563
Score = 28.2 bits (14), Expect = 8.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 135 tccaccgagacatc 148
||||||||||||||
Sbjct: 734 tccaccgagacatc 747
>ISKpn31
Length = 2328
Score = 28.2 bits (14), Expect = 8.8
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 85 ccgcctcgaacagcttgg 102
|||||||||||| |||||
Sbjct: 1786 ccgcctcgaacaacttgg 1769
>ISHamu1
Length = 1475
Score = 28.2 bits (14), Expect = 8.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 64 ggatgccgccaagg 77
||||||||||||||
Sbjct: 1011 ggatgccgccaagg 998
>ISNph29
Length = 1558
Score = 28.2 bits (14), Expect = 8.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 217 cttccatgatgtgc 230
||||||||||||||
Sbjct: 717 cttccatgatgtgc 704
>TnAs1
Length = 6694
Score = 28.2 bits (14), Expect = 8.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 147 tcggcgtcgtgaca 160
||||||||||||||
Sbjct: 2384 tcggcgtcgtgaca 2397
Score = 28.2 bits (14), Expect = 8.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 401 gacggtggccaact 414
||||||||||||||
Sbjct: 5284 gacggtggccaact 5271
>ISCfu1
Length = 1289
Score = 28.2 bits (14), Expect = 8.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 275 gaagtcgcccacca 288
||||||||||||||
Sbjct: 648 gaagtcgcccacca 635
>ISMrh1
Length = 1472
Score = 28.2 bits (14), Expect = 8.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 143 gacatcggcgtcgt 156
||||||||||||||
Sbjct: 1127 gacatcggcgtcgt 1114
>ISKpn15
Length = 1534
Score = 28.2 bits (14), Expect = 8.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 203 cgcatccgccagca 216
||||||||||||||
Sbjct: 1082 cgcatccgccagca 1069
>ISPa36
Length = 2468
Score = 28.2 bits (14), Expect = 8.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 49 ggctggcgccgccg 62
||||||||||||||
Sbjct: 453 ggctggcgccgccg 440
>ISAzs30
Length = 2365
Score = 28.2 bits (14), Expect = 8.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 72 ccaaggcgcgcggc 85
||||||||||||||
Sbjct: 1516 ccaaggcgcgcggc 1503
>ISAzs27
Length = 1270
Score = 28.2 bits (14), Expect = 8.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 11 atgcatgccgaacc 24
||||||||||||||
Sbjct: 806 atgcatgccgaacc 819
>ISAs12
Length = 1438
Score = 28.2 bits (14), Expect = 8.8
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 85 ccgcctcgaacagcttgg 102
|||||||||||| |||||
Sbjct: 896 ccgcctcgaacaacttgg 879
>ISSgr2
Length = 873
Score = 28.2 bits (14), Expect = 8.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 403 cggtggccaactcg 416
||||||||||||||
Sbjct: 23 cggtggccaactcg 10
>ISNpu1
Length = 1803
Score = 28.2 bits (14), Expect = 8.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 233 gtcgccaacggaca 246
||||||||||||||
Sbjct: 530 gtcgccaacggaca 543
>ISGvi6
Length = 1662
Score = 28.2 bits (14), Expect = 8.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 91 cgaacagcttggcg 104
||||||||||||||
Sbjct: 165 cgaacagcttggcg 152
>ISFsp12
Length = 1730
Score = 28.2 bits (14), Expect = 8.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 191 gatggcgctggtcg 204
||||||||||||||
Sbjct: 342 gatggcgctggtcg 355
>ISArsp6
Length = 26712
Score = 28.2 bits (14), Expect = 8.8
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 50 gctggcgccgccgaggat 67
|||| |||||||||||||
Sbjct: 12431 gctgccgccgccgaggat 12414
Score = 28.2 bits (14), Expect = 8.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 55 cgccgccgaggatg 68
||||||||||||||
Sbjct: 12915 cgccgccgaggatg 12902
>ISAzba6
Length = 1138
Score = 28.2 bits (14), Expect = 8.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 305 gccgaacagggcgt 318
||||||||||||||
Sbjct: 259 gccgaacagggcgt 272
>ISAnsp4
Length = 2195
Score = 28.2 bits (14), Expect = 8.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 187 cggcgatggcgctg 200
||||||||||||||
Sbjct: 870 cggcgatggcgctg 857
>ISCth12
Length = 2497
Score = 28.2 bits (14), Expect = 8.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 167 cagctgcagcactt 180
||||||||||||||
Sbjct: 1579 cagctgcagcactt 1566
>ISThsp19
Length = 2657
Score = 28.2 bits (14), Expect = 8.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 280 cgcccaccagcacc 293
||||||||||||||
Sbjct: 1967 cgcccaccagcacc 1954
>ISThsp16
Length = 1602
Score = 28.2 bits (14), Expect = 8.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 97 gcttggcggtcttg 110
||||||||||||||
Sbjct: 777 gcttggcggtcttg 764
>ISSav7
Length = 2992
Score = 28.2 bits (14), Expect = 8.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 143 gacatcggcgtcgt 156
||||||||||||||
Sbjct: 263 gacatcggcgtcgt 276
>ISAli3
Length = 1167
Score = 28.2 bits (14), Expect = 8.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 192 atggcgctggtcgc 205
||||||||||||||
Sbjct: 742 atggcgctggtcgc 729
>ISPa16
Length = 1192
Score = 28.2 bits (14), Expect = 8.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 58 cgccgaggatgccg 71
||||||||||||||
Sbjct: 429 cgccgaggatgccg 416
>ISHne2
Length = 1316
Score = 28.2 bits (14), Expect = 8.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 73 caaggcgcgcggcc 86
||||||||||||||
Sbjct: 918 caaggcgcgcggcc 905
>ISAeca1
Length = 1091
Score = 28.2 bits (14), Expect = 8.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 192 atggcgctggtcgc 205
||||||||||||||
Sbjct: 349 atggcgctggtcgc 362
>ISRme15
Length = 1325
Score = 28.2 bits (14), Expect = 8.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 72 ccaaggcgcgcggc 85
||||||||||||||
Sbjct: 1133 ccaaggcgcgcggc 1120
>ISGur15
Length = 2390
Score = 28.2 bits (14), Expect = 8.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 257 gaaagcgcgggaat 270
||||||||||||||
Sbjct: 650 gaaagcgcgggaat 637
>ISPca2
Length = 1218
Score = 28.2 bits (14), Expect = 8.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 8 cagatgcatgccga 21
||||||||||||||
Sbjct: 800 cagatgcatgccga 813
>ISNha2
Length = 1455
Score = 28.2 bits (14), Expect = 8.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 204 gcatccgccagcac 217
||||||||||||||
Sbjct: 699 gcatccgccagcac 686
>ISNha1
Length = 1452
Score = 28.2 bits (14), Expect = 8.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 204 gcatccgccagcac 217
||||||||||||||
Sbjct: 699 gcatccgccagcac 686
>ISBj6_B
Length = 1447
Score = 28.2 bits (14), Expect = 8.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 204 gcatccgccagcac 217
||||||||||||||
Sbjct: 687 gcatccgccagcac 674
>ISSod11
Length = 1040
Score = 28.2 bits (14), Expect = 8.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 89 ctcgaacagcttgg 102
||||||||||||||
Sbjct: 193 ctcgaacagcttgg 180
>ISFsp3
Length = 2209
Score = 28.2 bits (14), Expect = 8.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 305 gccgaacagggcgt 318
||||||||||||||
Sbjct: 1287 gccgaacagggcgt 1274
>ISPpu18
Length = 1192
Score = 28.2 bits (14), Expect = 8.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 58 cgccgaggatgccg 71
||||||||||||||
Sbjct: 429 cgccgaggatgccg 416
>ISEcl1
Length = 1336
Score = 28.2 bits (14), Expect = 8.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 155 gtgacagttgcgca 168
||||||||||||||
Sbjct: 505 gtgacagttgcgca 492
>IS987
Length = 1355
Score = 28.2 bits (14), Expect = 8.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 403 cggtggccaactcg 416
||||||||||||||
Sbjct: 1197 cggtggccaactcg 1184
>IS986
Length = 1354
Score = 28.2 bits (14), Expect = 8.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 403 cggtggccaactcg 416
||||||||||||||
Sbjct: 1196 cggtggccaactcg 1183
>IS6110
Length = 1354
Score = 28.2 bits (14), Expect = 8.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 403 cggtggccaactcg 416
||||||||||||||
Sbjct: 1196 cggtggccaactcg 1183
>IS1513
Length = 1705
Score = 28.2 bits (14), Expect = 8.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 54 gcgccgccgaggat 67
||||||||||||||
Sbjct: 1653 gcgccgccgaggat 1640
>IS1356
Length = 1354
Score = 28.2 bits (14), Expect = 8.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 73 caaggcgcgcggcc 86
||||||||||||||
Sbjct: 1154 caaggcgcgcggcc 1167
>ISSiac3
Length = 1335
Score = 28.2 bits (14), Expect = 8.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 275 gaagtcgcccacca 288
||||||||||||||
Sbjct: 672 gaagtcgcccacca 659
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_66_length_421_cov_0.997093_ID_5304
(421 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISPkr1 | IS21 | Paracoccus koreensis | 34 | 0.14 | |
| ISAzs8 | ISL3 | Azospirillum sp. | 32 | 0.54 | |
| ISMtsp5 | IS3 | IS2 | Methylobacterium sp. | 32 | 0.54 |
| ISMpo6 | IS1182 | Methylobacterium populi | 32 | 0.54 | |
| ISMex17 | IS110 | Methylobacterium extorquens | 32 | 0.54 | |
| ISMpa1 | IS110 | Mycobacterium avium | 32 | 0.54 | |
| TnXo19 | Tn3 | Xanthomonas oryzae | 30 | 2.1 | |
| ISMal1 | ISKra4 | ISAzba1 | Mesorhizobium alhagi | 30 | 2.1 |
| ISAzba9 | ISL3 | Azospirillum brasilense | 30 | 2.1 | |
| ISAzs15 | ISAs1 | Azospirillum sp. | 30 | 2.1 | |
| ISMno5 | ISL3 | Methylobacterium nodulans | 30 | 2.1 | |
| ISCgl4 | IS1380 | Corynebacterium glutamicum | 30 | 2.1 | |
| ISAzo11 | IS5 | IS5 | Azoarcus sp. | 30 | 2.1 |
| ISDha10 | IS110 | Desulfitobacterium hafniense | 30 | 2.1 | |
| ISGdi8 | IS256 | Gluconacetobacter diazotrophicus | 30 | 2.1 | |
| ISBthe6 | IS66 | Bacteroides thetaiotaomicron | 30 | 2.1 | |
| ISSsp5 | IS21 | Sphingomonas sp. | 30 | 2.1 | |
| ISPre3 | IS66 | Pseudomonas resinovorans | 30 | 2.1 | |
| ISRme4 | IS21 | Cupriavidus metallidurans | 30 | 2.1 | |
| ISMxa2 | IS3 | IS407 | Myxococcus xanthus | 30 | 2.1 |
| ISH7B | ISNCY | Halobacterium sp. | 30 | 2.1 | |
| ISH7A | ISNCY | Halobacterium sp. | 30 | 2.1 | |
| ISPsy36 | IS1182 | Pseudomonas syringae | 28 | 8.4 | |
| TnAs2 | Tn3 | Aeromonas salmonicida | 28 | 8.4 | |
| ISMme1 | ISAzo13 | Mesorhizobium metallidurans | 28 | 8.4 | |
| ISBsa1 | IS256 | Blastococcus saxobsidens | 28 | 8.4 | |
| ISPa38 | Tn3 | Pseudomonas aeruginosa | 28 | 8.4 | |
| ISStsp4 | IS5 | ISL2 | Streptomyces sp. | 28 | 8.4 |
| ISPa30 | IS66 | Pseudomonas aeruginosa | 28 | 8.4 | |
| ISHwa11 | IS66 | ISBst12 | Haloquadratum walsbyi | 28 | 8.4 |
| ISMno19 | IS630 | Methylobacterium nodulans | 28 | 8.4 | |
| ISGosp1 | IS1380 | Gordonia sp. | 28 | 8.4 | |
| ISMdi27 | IS21 | Methylobacterium dichloromethanicum | 28 | 8.4 | |
| ISMex11 | IS3 | IS407 | Methylobacterium extorquens | 28 | 8.4 |
| ISMdi10 | IS110 | IS1111 | Methylobacterium dichloromethanicum | 28 | 8.4 |
| ISMex6 | ISNCY | IS1202 | Methylobacterium extorquens | 28 | 8.4 |
| ISThsp13 | IS1380 | Thiomonas sp. | 28 | 8.4 | |
| ISCARN98 | IS1380 | Metagenomic data from CARNOULES | 28 | 8.4 | |
| ISAzo30 | IS630 | Azoarcus sp. | 28 | 8.4 | |
| ISCARN23 | IS1634 | Metagenomic data from CARNOULES | 28 | 8.4 | |
| ISCARN9 | IS1634 | Metagenomic data from CARNOULES | 28 | 8.4 | |
| ISThsp2 | IS21 | Thiomonas sp. | 28 | 8.4 | |
| ISMasp5 | IS66 | ISBst12 | Magnetococcus sp. | 28 | 8.4 |
| ISSso4 | IS21 | Shigella sonnei | 28 | 8.4 | |
| ISAzo9 | IS630 | Azoarcus sp. | 28 | 8.4 | |
| ISPst3 | IS21 | Pseudomonas stutzeri | 28 | 8.4 | |
| ISRle7 | IS6 | Rhizobium leguminosarum | 28 | 8.4 | |
| ISPsy20 | IS21 | Pseudomonas syringae | 28 | 8.4 | |
| ISMysp3 | IS3 | IS51 | Mycobacterium sp. | 28 | 8.4 |
| ISDra7 | IS4 | ISPepr1 | Deinococcus radiodurans | 28 | 8.4 |
| IS469 | ISL3 | - | Streptomyces coelicolor | 28 | 8.4 |
| IS1474 | IS21 | - | Pseudomonas alcaligenes | 28 | 8.4 |
| IS1389-B | IS3 | IS407 | Xanthomonas campestris | 28 | 8.4 |
| IS116 | IS110 | - | Streptomyces clavuligerus | 28 | 8.4 |
>ISPkr1
Length = 2469
Score = 34.2 bits (17), Expect = 0.14
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 41 gatgccggggtgcaggc 57
|||||||||||||||||
Sbjct: 819 gatgccggggtgcaggc 803
>ISAzs8
Length = 1373
Score = 32.2 bits (16), Expect = 0.54
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 39 gagatgccggggtgca 54
||||||||||||||||
Sbjct: 260 gagatgccggggtgca 245
>ISMtsp5
Length = 1347
Score = 32.2 bits (16), Expect = 0.54
Identities = 22/24 (91%)
Strand = Plus / Minus
Query: 2 gcgcagcaggcgcagcacggggcg 25
||||| ||||||||||||| ||||
Sbjct: 710 gcgcatcaggcgcagcacgcggcg 687
>ISMpo6
Length = 1593
Score = 32.2 bits (16), Expect = 0.54
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 309 cttccggatgcgccgg 324
||||||||||||||||
Sbjct: 1386 cttccggatgcgccgg 1401
>ISMex17
Length = 1132
Score = 32.2 bits (16), Expect = 0.54
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 27 gcggtggcgggtgaga 42
||||||||||||||||
Sbjct: 42 gcggtggcgggtgaga 57
>ISMpa1
Length = 1500
Score = 32.2 bits (16), Expect = 0.54
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 382 caggtacaccaccgcc 397
||||||||||||||||
Sbjct: 1137 caggtacaccaccgcc 1152
>TnXo19
Length = 18767
Score = 30.2 bits (15), Expect = 2.1
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 214 cgtgggcgaacgcga 228
|||||||||||||||
Sbjct: 8211 cgtgggcgaacgcga 8197
Score = 28.2 bits (14), Expect = 8.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 68 ggcgctggcgtcgc 81
||||||||||||||
Sbjct: 12337 ggcgctggcgtcgc 12350
>ISMal1
Length = 2308
Score = 30.2 bits (15), Expect = 2.1
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 148 caatcgacagtccgc 162
|||||||||||||||
Sbjct: 1141 caatcgacagtccgc 1155
>ISAzba9
Length = 1847
Score = 30.2 bits (15), Expect = 2.1
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 39 gagatgccggggtgc 53
|||||||||||||||
Sbjct: 745 gagatgccggggtgc 731
>ISAzs15
Length = 1263
Score = 30.2 bits (15), Expect = 2.1
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 108 accgcctcttcccgggcga 126
|||||| ||||||||||||
Sbjct: 859 accgccgcttcccgggcga 877
>ISMno5
Length = 1728
Score = 30.2 bits (15), Expect = 2.1
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 291 cggccggcgcgcccg 305
|||||||||||||||
Sbjct: 728 cggccggcgcgcccg 714
>ISCgl4
Length = 1653
Score = 30.2 bits (15), Expect = 2.1
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 46 cggggtgcaggccgg 60
|||||||||||||||
Sbjct: 691 cggggtgcaggccgg 705
>ISAzo11
Length = 1280
Score = 30.2 bits (15), Expect = 2.1
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 394 cgcccccgcctcacc 408
|||||||||||||||
Sbjct: 445 cgcccccgcctcacc 431
>ISDha10
Length = 1976
Score = 30.2 bits (15), Expect = 2.1
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 195 ctcatgagttctctt 209
|||||||||||||||
Sbjct: 1044 ctcatgagttctctt 1058
>ISGdi8
Length = 1356
Score = 30.2 bits (15), Expect = 2.1
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 125 gaccggcgatggccg 139
|||||||||||||||
Sbjct: 61 gaccggcgatggccg 47
>ISBthe6
Length = 2544
Score = 30.2 bits (15), Expect = 2.1
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 271 aaacagcaggtgaaa 285
|||||||||||||||
Sbjct: 797 aaacagcaggtgaaa 811
>ISSsp5
Length = 2501
Score = 30.2 bits (15), Expect = 2.1
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 5 cagcaggcgcagcac 19
|||||||||||||||
Sbjct: 1392 cagcaggcgcagcac 1378
>ISPre3
Length = 2957
Score = 30.2 bits (15), Expect = 2.1
Identities = 21/23 (91%)
Strand = Plus / Plus
Query: 318 gcgccgggtcgccttgccggagc 340
||||||||||||| |||| ||||
Sbjct: 2438 gcgccgggtcgccgtgcccgagc 2460
>ISRme4
Length = 2469
Score = 30.2 bits (15), Expect = 2.1
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 369 ggccgccgaccagca 383
|||||||||||||||
Sbjct: 1939 ggccgccgaccagca 1925
>ISMxa2
Length = 1244
Score = 30.2 bits (15), Expect = 2.1
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 242 atgcgcacggccacgtcga 260
|||||| ||||||||||||
Sbjct: 803 atgcgcccggccacgtcga 785
>ISH7B
Length = 2924
Score = 30.2 bits (15), Expect = 2.1
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 371 ccgccgaccagcagg 385
|||||||||||||||
Sbjct: 2435 ccgccgaccagcagg 2449
>ISH7A
Length = 3302
Score = 30.2 bits (15), Expect = 2.1
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 371 ccgccgaccagcagg 385
|||||||||||||||
Sbjct: 2814 ccgccgaccagcagg 2828
>ISPsy36
Length = 1658
Score = 28.2 bits (14), Expect = 8.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 87 cggtctgccaccac 100
||||||||||||||
Sbjct: 958 cggtctgccaccac 945
>TnAs2
Length = 8650
Score = 28.2 bits (14), Expect = 8.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 129 ggcgatggccggaa 142
||||||||||||||
Sbjct: 1298 ggcgatggccggaa 1285
>ISMme1
Length = 1324
Score = 28.2 bits (14), Expect = 8.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 21 gggcgggcggtggc 34
||||||||||||||
Sbjct: 312 gggcgggcggtggc 325
>ISBsa1
Length = 1464
Score = 28.2 bits (14), Expect = 8.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 373 gccgaccagcaggt 386
||||||||||||||
Sbjct: 817 gccgaccagcaggt 804
Score = 28.2 bits (14), Expect = 8.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 8 caggcgcagcacgg 21
||||||||||||||
Sbjct: 1144 caggcgcagcacgg 1131
>ISPa38
Length = 6455
Score = 28.2 bits (14), Expect = 8.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 1 tgcgcagcaggcgc 14
||||||||||||||
Sbjct: 1467 tgcgcagcaggcgc 1480
>ISStsp4
Length = 902
Score = 28.2 bits (14), Expect = 8.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 69 gcgctggcgtcgcg 82
||||||||||||||
Sbjct: 215 gcgctggcgtcgcg 228
>ISPa30
Length = 2436
Score = 28.2 bits (14), Expect = 8.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 2 gcgcagcaggcgca 15
||||||||||||||
Sbjct: 1881 gcgcagcaggcgca 1894
>ISHwa11
Length = 1579
Score = 28.2 bits (14), Expect = 8.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 81 cgcagccggtctgc 94
||||||||||||||
Sbjct: 799 cgcagccggtctgc 786
>ISMno19
Length = 1138
Score = 28.2 bits (14), Expect = 8.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 282 gaaaggcttcggcc 295
||||||||||||||
Sbjct: 1062 gaaaggcttcggcc 1049
>ISGosp1
Length = 1642
Score = 28.2 bits (14), Expect = 8.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 22 ggcgggcggtggcg 35
||||||||||||||
Sbjct: 772 ggcgggcggtggcg 759
>ISMdi27
Length = 2476
Score = 28.2 bits (14), Expect = 8.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 370 gccgccgaccagca 383
||||||||||||||
Sbjct: 1920 gccgccgaccagca 1907
>ISMex11
Length = 1227
Score = 28.2 bits (14), Expect = 8.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 76 cgtcgcgcagccgg 89
||||||||||||||
Sbjct: 1021 cgtcgcgcagccgg 1008
>ISMdi10
Length = 1186
Score = 28.2 bits (14), Expect = 8.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 288 cttcggccggcgcg 301
||||||||||||||
Sbjct: 538 cttcggccggcgcg 551
>ISMex6
Length = 1535
Score = 28.2 bits (14), Expect = 8.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 80 gcgcagccggtctg 93
||||||||||||||
Sbjct: 240 gcgcagccggtctg 253
>ISThsp13
Length = 1583
Score = 28.2 bits (14), Expect = 8.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 4 gcagcaggcgcagc 17
||||||||||||||
Sbjct: 1196 gcagcaggcgcagc 1183
>ISCARN98
Length = 1685
Score = 28.2 bits (14), Expect = 8.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 63 accaaggcgctggc 76
||||||||||||||
Sbjct: 515 accaaggcgctggc 502
>ISAzo30
Length = 1100
Score = 28.2 bits (14), Expect = 8.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 68 ggcgctggcgtcgc 81
||||||||||||||
Sbjct: 241 ggcgctggcgtcgc 254
>ISCARN23
Length = 1907
Score = 28.2 bits (14), Expect = 8.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 1 tgcgcagcaggcgc 14
||||||||||||||
Sbjct: 604 tgcgcagcaggcgc 591
>ISCARN9
Length = 1931
Score = 28.2 bits (14), Expect = 8.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 325 gtcgccttgccgga 338
||||||||||||||
Sbjct: 575 gtcgccttgccgga 588
>ISThsp2
Length = 2644
Score = 28.2 bits (14), Expect = 8.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 265 ggcgtcaaacagca 278
||||||||||||||
Sbjct: 649 ggcgtcaaacagca 636
>ISMasp5
Length = 1967
Score = 28.2 bits (14), Expect = 8.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 283 aaaggcttcggccg 296
||||||||||||||
Sbjct: 730 aaaggcttcggccg 743
>ISSso4
Length = 2638
Score = 28.2 bits (14), Expect = 8.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 127 ccggcgatggccgg 140
||||||||||||||
Sbjct: 1826 ccggcgatggccgg 1839
>ISAzo9
Length = 1483
Score = 28.2 bits (14), Expect = 8.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 286 ggcttcggccggcg 299
||||||||||||||
Sbjct: 190 ggcttcggccggcg 203
>ISPst3
Length = 2606
Score = 28.2 bits (14), Expect = 8.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 370 gccgccgaccagca 383
||||||||||||||
Sbjct: 538 gccgccgaccagca 525
>ISRle7
Length = 891
Score = 28.2 bits (14), Expect = 8.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 282 gaaaggcttcggcc 295
||||||||||||||
Sbjct: 743 gaaaggcttcggcc 756
>ISPsy20
Length = 2572
Score = 28.2 bits (14), Expect = 8.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 157 gtccgctcttggcg 170
||||||||||||||
Sbjct: 422 gtccgctcttggcg 435
>ISMysp3
Length = 1362
Score = 28.2 bits (14), Expect = 8.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 286 ggcttcggccggcg 299
||||||||||||||
Sbjct: 1277 ggcttcggccggcg 1264
>ISDra7
Length = 1322
Score = 28.2 bits (14), Expect = 8.4
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 365 aacaggccgccgaccagc 382
||||||||||||| ||||
Sbjct: 542 aacaggccgccgatcagc 559
>IS469
Length = 1647
Score = 28.2 bits (14), Expect = 8.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 3 cgcagcaggcgcag 16
||||||||||||||
Sbjct: 505 cgcagcaggcgcag 492
>IS1474
Length = 2633
Score = 28.2 bits (14), Expect = 8.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 72 ctggcgtcgcgcag 85
||||||||||||||
Sbjct: 791 ctggcgtcgcgcag 778
>IS1389-B
Length = 1203
Score = 28.2 bits (14), Expect = 8.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 76 cgtcgcgcagccgg 89
||||||||||||||
Sbjct: 1001 cgtcgcgcagccgg 988
>IS116
Length = 1421
Score = 28.2 bits (14), Expect = 8.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 312 ccggatgcgccggg 325
||||||||||||||
Sbjct: 548 ccggatgcgccggg 561
Score = 28.2 bits (14), Expect = 8.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 77 gtcgcgcagccggt 90
||||||||||||||
Sbjct: 674 gtcgcgcagccggt 661
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_67_length_420_cov_1.06122_ID_5306
(420 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISThsp9 | Tn3 | Thiomonas sp. | 38 | 0.009 | |
| ISSiac1 | IS701 | Singulisphaera acidiphila | 34 | 0.14 | |
| ISMdi12 | IS110 | IS1111 | Methylobacterium dichloromethanicum | 32 | 0.54 |
| ISCARN108 | IS66 | Metagenomic data from CARNOULES | 32 | 0.54 | |
| ISHne3 | IS110 | Hyphomonas neptunium | 32 | 0.54 | |
| TnXo19 | Tn3 | Xanthomonas oryzae | 30 | 2.1 | |
| TnAs3 | Tn3 | Aeromonas salmonicida | 30 | 2.1 | |
| ISAcas3 | ISKra4 | ISKra4 | Acaryochloris sp. | 30 | 2.1 |
| ISSar1 | IS5 | ISL2 | Salinispora arenicola | 30 | 2.1 |
| ISMav6 | IS110 | Mycobacterium avium | 30 | 2.1 | |
| ISThsp11 | IS3 | IS3 | Thiomonas sp. | 30 | 2.1 |
| ISCARN18 | IS110 | IS1111 | Metagenomic data from CARNOULES | 30 | 2.1 |
| ISThsp2 | IS21 | Thiomonas sp. | 30 | 2.1 | |
| ISDds3 | IS4 | IS10 | Deinococcus deserti | 30 | 2.1 |
| ISStau2 | IS66 | ISBst12 | Stigmatella aurantiaca | 30 | 2.1 |
| ISMrsp5 | IS66 | ISBst12 | Marinobacter sp. | 30 | 2.1 |
| ISSpu5 | IS21 | Shewanella putrefaciens | 30 | 2.1 | |
| ISBcen18 | IS256 | Burkholderia cenocepacia | 30 | 2.1 | |
| ISMmg2 | IS110 | IS1111 | Magnetospirillum magnetotacticum | 30 | 2.1 |
| IS1489v1 | ISL3 | - | Pseudomonas putida | 30 | 2.1 |
| ISTha3 | IS91 | Thauera sp. | 28 | 8.4 | |
| ISShdy2 | IS66 | Shigella dysenteriae | 28 | 8.4 | |
| ISMno29 | IS110 | Methylobacterium nodulans | 28 | 8.4 | |
| TnAs2 | Tn3 | Aeromonas salmonicida | 28 | 8.4 | |
| ISAs22 | IS3 | IS407 | Aeromonas salmonicida | 28 | 8.4 |
| ISAfe13 | ISKra4 | ISAzba1 | Acidithiobacillus ferrivorans | 28 | 8.4 |
| ISPa43 | Tn3 | Pseudomonas aeruginosa | 28 | 8.4 | |
| ISAzs17 | Tn3 | Azospirillum sp. | 28 | 8.4 | |
| ISAzs5 | ISAs1 | Azospirillum sp. | 28 | 8.4 | |
| ISAra1 | IS5 | IS903 | Agrobacterium radiobacter | 28 | 8.4 |
| ISHph1 | IS5 | IS903 | Hoeflea phototrophica | 28 | 8.4 |
| ISMlo5 | ISNCY | ISDol1 | Mesorhizobium loti | 28 | 8.4 |
| ISDisp1 | IS5 | Diaphorobacter sp. | 28 | 8.4 | |
| ISMno33 | IS1182 | Methylobacterium nodulans | 28 | 8.4 | |
| ISMno23 | IS91 | Methylobacterium nodulans | 28 | 8.4 | |
| ISMno17 | IS1182 | Methylobacterium nodulans | 28 | 8.4 | |
| ISMno31 | IS3 | IS150 | Methylobacterium nodulans | 28 | 8.4 |
| ISArsp6 | Tn3 | Arthrobacter sp. | 28 | 8.4 | |
| ISMch1 | IS3 | IS150 | Methylobacterium chloromethanicum | 28 | 8.4 |
| ISAde2 | IS1182 | Anaeromyxobacter dehalogenans | 28 | 8.4 | |
| ISMex12 | IS110 | Methylobacterium extorquens | 28 | 8.4 | |
| ISMex16 | IS3 | IS150 | Methylobacterium extorquens | 28 | 8.4 |
| ISMdi21 | IS5 | IS1031 | Methylobacterium dichloromethanicum | 28 | 8.4 |
| ISAnsp5 | IS21 | Anaeromyxobacter sp. | 28 | 8.4 | |
| ISAzo41 | IS5 | IS5 | Azoarcus sp. | 28 | 8.4 |
| ISThsp4 | IS3 | IS3 | Thiomonas sp. | 28 | 8.4 |
| ISThsp1 | IS1182 | Thiomonas sp. | 28 | 8.4 | |
| ISAli12B | IS5 | IS427 | Azospirillum lipoferum | 28 | 8.4 |
| ISAli12A | IS5 | IS427 | Azospirillum lipoferum | 28 | 8.4 |
| ISSpu2 | IS630 | Shewanella putrefaciens | 28 | 8.4 | |
| ISSgr1 | IS110 | IS1111 | Streptomyces griseus | 28 | 8.4 |
| ISRme4 | IS21 | Cupriavidus metallidurans | 28 | 8.4 | |
| ISMsm9 | IS481 | Mycobacterium smegmatis | 28 | 8.4 | |
| ISRpa1 | IS1595 | ISNwi1 | Rhodopseudomonas palustris | 28 | 8.4 |
| ISPsy28 | IS3 | IS3 | Pseudomonas syringae | 28 | 8.4 |
| ISMmg4 | IS701 | Magnetospirillum magneticum | 28 | 8.4 | |
| ISXac1 | IS4 | IS10 | Xanthomonas axonopodis | 28 | 8.4 |
| ISPosp1 | IS4 | IS4 | Polaromonas sp. | 28 | 8.4 |
| ISRsp6 | IS4 | IS4Sa | Rhizobium sp. | 28 | 8.4 |
| ISRm16 | IS4 | IS4Sa | Sinorhizobium meliloti | 28 | 8.4 |
| ISBmu3 | IS21 | Burkholderia multivorans | 28 | 8.4 | |
| ISCc3 | IS3 | IS150 | Caulobacter crescentus | 28 | 8.4 |
| ISMlo1 | IS110 | IS1111 | Mesorhizobium loti | 28 | 8.4 |
| ISRsp4 | IS110 | IS1111 | Rhizobium sp. | 28 | 8.4 |
| ISXc4 | Tn3 | - | Xanthomonas campestris | 28 | 8.4 |
| ISXaca1 | IS4 | IS10 | Xanthomonas campestris | 28 | 8.4 |
| ISRm13 | IS5 | IS5 | Sinorhizobium meliloti | 28 | 8.4 |
| IS931 | IS256 | - | Burkholderia cepacia | 28 | 8.4 |
| IS6100 | IS6 | - | Mycobacterium fortuitum | 28 | 8.4 |
| IS2000 | IS5 | IS5 | Pseudomonas aeruginosa | 28 | 8.4 |
| IS1355 | IS5 | IS1031 | Methylobacterium dichloromethanicum | 28 | 8.4 |
>ISThsp9
Length = 6215
Score = 38.2 bits (19), Expect = 0.009
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 400 ctgggcgatctgatccagc 418
|||||||||||||||||||
Sbjct: 6071 ctgggcgatctgatccagc 6089
>ISSiac1
Length = 1358
Score = 34.2 bits (17), Expect = 0.14
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 391 gtcggtggtctgggcga 407
|||||||||||||||||
Sbjct: 277 gtcggtggtctgggcga 261
>ISMdi12
Length = 1371
Score = 32.2 bits (16), Expect = 0.54
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 337 ctcggcaatggcctcg 352
||||||||||||||||
Sbjct: 375 ctcggcaatggcctcg 360
>ISCARN108
Length = 2423
Score = 32.2 bits (16), Expect = 0.54
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 24 ttcgacatcacgaaac 39
||||||||||||||||
Sbjct: 905 ttcgacatcacgaaac 890
>ISHne3
Length = 1172
Score = 32.2 bits (16), Expect = 0.54
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 12 cggcggcaggtcttcgacat 31
|||||||||||| |||||||
Sbjct: 588 cggcggcaggtcatcgacat 607
>TnXo19
Length = 18767
Score = 30.2 bits (15), Expect = 2.1
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 38 acacgctgcccgcgc 52
|||||||||||||||
Sbjct: 1725 acacgctgcccgcgc 1739
>TnAs3
Length = 18735
Score = 30.2 bits (15), Expect = 2.1
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 208 agcgcctgccggccc 222
|||||||||||||||
Sbjct: 9536 agcgcctgccggccc 9522
Score = 28.2 bits (14), Expect = 8.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 205 gccagcgcctgccg 218
||||||||||||||
Sbjct: 6204 gccagcgcctgccg 6191
>ISAcas3
Length = 1484
Score = 30.2 bits (15), Expect = 2.1
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 272 agcgcctccatctgc 286
|||||||||||||||
Sbjct: 908 agcgcctccatctgc 894
>ISSar1
Length = 914
Score = 30.2 bits (15), Expect = 2.1
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 207 cagcgcctgccggcc 221
|||||||||||||||
Sbjct: 252 cagcgcctgccggcc 238
>ISMav6
Length = 1472
Score = 30.2 bits (15), Expect = 2.1
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 395 gtggtctgggcgatc 409
|||||||||||||||
Sbjct: 389 gtggtctgggcgatc 403
>ISThsp11
Length = 1814
Score = 30.2 bits (15), Expect = 2.1
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 277 ctccatctgctcggc 291
|||||||||||||||
Sbjct: 559 ctccatctgctcggc 545
>ISCARN18
Length = 1561
Score = 30.2 bits (15), Expect = 2.1
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 369 tctggctggcggtgc 383
|||||||||||||||
Sbjct: 514 tctggctggcggtgc 528
>ISThsp2
Length = 2644
Score = 30.2 bits (15), Expect = 2.1
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 86 cggcatggccggcgc 100
|||||||||||||||
Sbjct: 1670 cggcatggccggcgc 1684
>ISDds3
Length = 1176
Score = 30.2 bits (15), Expect = 2.1
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 376 ggcggtgcgctggtc 390
|||||||||||||||
Sbjct: 1073 ggcggtgcgctggtc 1087
>ISStau2
Length = 1585
Score = 30.2 bits (15), Expect = 2.1
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 152 ggtcgcgctccttca 166
|||||||||||||||
Sbjct: 1114 ggtcgcgctccttca 1100
>ISMrsp5
Length = 1738
Score = 30.2 bits (15), Expect = 2.1
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 93 gccggcgctgtcttc 107
|||||||||||||||
Sbjct: 859 gccggcgctgtcttc 873
>ISSpu5
Length = 2556
Score = 30.2 bits (15), Expect = 2.1
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 83 gaccggcatggccggcgct 101
|||||||||||| ||||||
Sbjct: 2277 gaccggcatggcaggcgct 2295
Score = 28.2 bits (14), Expect = 8.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 83 gaccggcatggccg 96
||||||||||||||
Sbjct: 1760 gaccggcatggccg 1773
>ISBcen18
Length = 1372
Score = 30.2 bits (15), Expect = 2.1
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 367 gctctggctggcggtgcgc 385
||||||||||||| |||||
Sbjct: 1210 gctctggctggcgctgcgc 1228
>ISMmg2
Length = 1380
Score = 30.2 bits (15), Expect = 2.1
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 181 cagtccccatgccaggcca 199
||||||| |||||||||||
Sbjct: 717 cagtcccgatgccaggcca 699
>IS1489v1
Length = 1898
Score = 30.2 bits (15), Expect = 2.1
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 361 ggtcacgctctggct 375
|||||||||||||||
Sbjct: 436 ggtcacgctctggct 450
>ISTha3
Length = 2424
Score = 28.2 bits (14), Expect = 8.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 146 gtcggtggtcgcgc 159
||||||||||||||
Sbjct: 2234 gtcggtggtcgcgc 2221
>ISShdy2
Length = 2496
Score = 28.2 bits (14), Expect = 8.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 208 agcgcctgccggcc 221
||||||||||||||
Sbjct: 1063 agcgcctgccggcc 1076
>ISMno29
Length = 1192
Score = 28.2 bits (14), Expect = 8.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 6 ctggcccggcggca 19
||||||||||||||
Sbjct: 773 ctggcccggcggca 786
>TnAs2
Length = 8650
Score = 28.2 bits (14), Expect = 8.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 6 ctggcccggcggca 19
||||||||||||||
Sbjct: 4142 ctggcccggcggca 4129
>ISAs22
Length = 1198
Score = 28.2 bits (14), Expect = 8.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 55 aagtggcgctccaa 68
||||||||||||||
Sbjct: 189 aagtggcgctccaa 202
>ISAfe13
Length = 2868
Score = 28.2 bits (14), Expect = 8.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 44 tgcccgcgccaaag 57
||||||||||||||
Sbjct: 217 tgcccgcgccaaag 204
>ISPa43
Length = 19903
Score = 28.2 bits (14), Expect = 8.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 396 tggtctgggcgatc 409
||||||||||||||
Sbjct: 789 tggtctgggcgatc 802
>ISAzs17
Length = 7252
Score = 28.2 bits (14), Expect = 8.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 385 ctggtcgtcggtgg 398
||||||||||||||
Sbjct: 252 ctggtcgtcggtgg 239
>ISAzs5
Length = 1333
Score = 28.2 bits (14), Expect = 8.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 376 ggcggtgcgctggt 389
||||||||||||||
Sbjct: 771 ggcggtgcgctggt 758
>ISAra1
Length = 1116
Score = 28.2 bits (14), Expect = 8.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 405 cgatctgatccagc 418
||||||||||||||
Sbjct: 665 cgatctgatccagc 652
>ISHph1
Length = 1130
Score = 28.2 bits (14), Expect = 8.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 405 cgatctgatccagc 418
||||||||||||||
Sbjct: 672 cgatctgatccagc 659
>ISMlo5
Length = 1664
Score = 28.2 bits (14), Expect = 8.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 264 cgccggcgagcgcc 277
||||||||||||||
Sbjct: 1502 cgccggcgagcgcc 1515
>ISDisp1
Length = 1321
Score = 28.2 bits (14), Expect = 8.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 390 cgtcggtggtctgg 403
||||||||||||||
Sbjct: 1039 cgtcggtggtctgg 1052
>ISMno33
Length = 1767
Score = 28.2 bits (14), Expect = 8.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 53 caaagtggcgctcc 66
||||||||||||||
Sbjct: 834 caaagtggcgctcc 821
>ISMno23
Length = 2271
Score = 28.2 bits (14), Expect = 8.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 210 cgcctgccggcccg 223
||||||||||||||
Sbjct: 1534 cgcctgccggcccg 1547
>ISMno17
Length = 1534
Score = 28.2 bits (14), Expect = 8.4
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 64 tccaacgcatcttccagc 81
|||| |||||||||||||
Sbjct: 1093 tccagcgcatcttccagc 1076
>ISMno31
Length = 1510
Score = 28.2 bits (14), Expect = 8.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 373 gctggcggtgcgct 386
||||||||||||||
Sbjct: 716 gctggcggtgcgct 729
>ISArsp6
Length = 26712
Score = 28.2 bits (14), Expect = 8.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 202 cgggccagcgcctg 215
||||||||||||||
Sbjct: 14249 cgggccagcgcctg 14262
>ISMch1
Length = 1294
Score = 28.2 bits (14), Expect = 8.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 51 gccaaagtggcgct 64
||||||||||||||
Sbjct: 103 gccaaagtggcgct 116
>ISAde2
Length = 1498
Score = 28.2 bits (14), Expect = 8.4
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 344 atggcctcgatgctgtcg 361
|||||||||||| |||||
Sbjct: 1039 atggcctcgatgttgtcg 1022
>ISMex12
Length = 1418
Score = 28.2 bits (14), Expect = 8.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 365 acgctctggctggc 378
||||||||||||||
Sbjct: 1104 acgctctggctggc 1117
>ISMex16
Length = 1511
Score = 28.2 bits (14), Expect = 8.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 373 gctggcggtgcgct 386
||||||||||||||
Sbjct: 717 gctggcggtgcgct 730
>ISMdi21
Length = 930
Score = 28.2 bits (14), Expect = 8.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 12 cggcggcaggtctt 25
||||||||||||||
Sbjct: 295 cggcggcaggtctt 282
>ISAnsp5
Length = 2192
Score = 28.2 bits (14), Expect = 8.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 263 tcgccggcgagcgc 276
||||||||||||||
Sbjct: 520 tcgccggcgagcgc 533
>ISAzo41
Length = 1158
Score = 28.2 bits (14), Expect = 8.4
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 277 ctccatctgctcggccga 294
||||||||||||| ||||
Sbjct: 330 ctccatctgctcgtccga 313
>ISThsp4
Length = 1289
Score = 28.2 bits (14), Expect = 8.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 253 cccctgcaactcgc 266
||||||||||||||
Sbjct: 578 cccctgcaactcgc 565
>ISThsp1
Length = 1539
Score = 28.2 bits (14), Expect = 8.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 7 tggcccggcggcag 20
||||||||||||||
Sbjct: 145 tggcccggcggcag 132
>ISAli12B
Length = 844
Score = 28.2 bits (14), Expect = 8.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 153 gtcgcgctccttca 166
||||||||||||||
Sbjct: 633 gtcgcgctccttca 620
>ISAli12A
Length = 845
Score = 28.2 bits (14), Expect = 8.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 153 gtcgcgctccttca 166
||||||||||||||
Sbjct: 634 gtcgcgctccttca 621
>ISSpu2
Length = 1152
Score = 28.2 bits (14), Expect = 8.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 204 ggccagcgcctgcc 217
||||||||||||||
Sbjct: 351 ggccagcgcctgcc 338
>ISSgr1
Length = 1544
Score = 28.2 bits (14), Expect = 8.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 290 gccgaactcaccgt 303
||||||||||||||
Sbjct: 667 gccgaactcaccgt 680
>ISRme4
Length = 2469
Score = 28.2 bits (14), Expect = 8.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 263 tcgccggcgagcgc 276
||||||||||||||
Sbjct: 541 tcgccggcgagcgc 554
>ISMsm9
Length = 1093
Score = 28.2 bits (14), Expect = 8.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 305 tggctgaccgcagc 318
||||||||||||||
Sbjct: 272 tggctgaccgcagc 285
>ISRpa1
Length = 2091
Score = 28.2 bits (14), Expect = 8.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 333 ccatctcggcaatg 346
||||||||||||||
Sbjct: 1941 ccatctcggcaatg 1954
>ISPsy28
Length = 1291
Score = 28.2 bits (14), Expect = 8.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 277 ctccatctgctcgg 290
||||||||||||||
Sbjct: 268 ctccatctgctcgg 255
>ISMmg4
Length = 1507
Score = 28.2 bits (14), Expect = 8.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 85 ccggcatggccggc 98
||||||||||||||
Sbjct: 358 ccggcatggccggc 371
>ISXac1
Length = 1350
Score = 28.2 bits (14), Expect = 8.4
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 204 ggccagcgcctgccggcc 221
|||||||||||| |||||
Sbjct: 1238 ggccagcgcctggcggcc 1221
>ISPosp1
Length = 1529
Score = 28.2 bits (14), Expect = 8.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 205 gccagcgcctgccg 218
||||||||||||||
Sbjct: 451 gccagcgcctgccg 464
>ISRsp6
Length = 1277
Score = 28.2 bits (14), Expect = 8.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 223 gccccgtcagacgg 236
||||||||||||||
Sbjct: 51 gccccgtcagacgg 64
>ISRm16
Length = 1299
Score = 28.2 bits (14), Expect = 8.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 223 gccccgtcagacgg 236
||||||||||||||
Sbjct: 51 gccccgtcagacgg 64
>ISBmu3
Length = 2697
Score = 28.2 bits (14), Expect = 8.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 330 gcgccatctcggca 343
||||||||||||||
Sbjct: 393 gcgccatctcggca 406
>ISCc3
Length = 1514
Score = 28.2 bits (14), Expect = 8.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 373 gctggcggtgcgct 386
||||||||||||||
Sbjct: 720 gctggcggtgcgct 733
>ISMlo1
Length = 1405
Score = 28.2 bits (14), Expect = 8.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 148 cggtggtcgcgctc 161
||||||||||||||
Sbjct: 224 cggtggtcgcgctc 237
>ISRsp4
Length = 1398
Score = 28.2 bits (14), Expect = 8.4
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 312 ccgcagcatcgttcttgc 329
|||| |||||||||||||
Sbjct: 356 ccgcggcatcgttcttgc 339
>ISXc4
Length = 6938
Score = 28.2 bits (14), Expect = 8.4
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 204 ggccagcgcctgccggcc 221
|||||||||||| |||||
Sbjct: 6213 ggccagcgcctggcggcc 6196
>ISXaca1
Length = 1350
Score = 28.2 bits (14), Expect = 8.4
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 204 ggccagcgcctgccggcc 221
|||||||||||| |||||
Sbjct: 1238 ggccagcgcctggcggcc 1221
>ISRm13
Length = 1550
Score = 28.2 bits (14), Expect = 8.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 406 gatctgatccagcc 419
||||||||||||||
Sbjct: 248 gatctgatccagcc 235
>IS931
Length = 1477
Score = 28.2 bits (14), Expect = 8.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 375 tggcggtgcgctgg 388
||||||||||||||
Sbjct: 1279 tggcggtgcgctgg 1292
>IS6100
Length = 880
Score = 28.2 bits (14), Expect = 8.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 376 ggcggtgcgctggt 389
||||||||||||||
Sbjct: 109 ggcggtgcgctggt 122
>IS2000
Length = 1186
Score = 28.2 bits (14), Expect = 8.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 127 atctgactcatggg 140
||||||||||||||
Sbjct: 97 atctgactcatggg 84
>IS1355
Length = 970
Score = 28.2 bits (14), Expect = 8.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 12 cggcggcaggtctt 25
||||||||||||||
Sbjct: 278 cggcggcaggtctt 265
Score = 28.2 bits (14), Expect = 8.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 363 tcacgctctggctg 376
||||||||||||||
Sbjct: 423 tcacgctctggctg 410
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_68_length_417_cov_0.855882_ID_5308
(417 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISDde3 | IS3 | IS3 | Desulfovibrio desulfuricans | 34 | 0.14 |
| ISAzs24 | IS3 | IS51 | Azospirillum sp. | 32 | 0.54 |
| ISMyma10 | IS3 | IS51 | Mycobacterium marinum | 30 | 2.1 |
| ISAzs17 | Tn3 | Azospirillum sp. | 30 | 2.1 | |
| ISSro1 | IS5 | ISL2 | Streptomyces roseosporus | 30 | 2.1 |
| ISMex28 | IS5 | IS5 | Methylobacterium extorquens | 30 | 2.1 |
| ISAZo16 | IS21 | Azoarcus sp. | 30 | 2.1 | |
| ISAli7 | IS256 | Azospirillum lipoferum | 30 | 2.1 | |
| ISLca4 | ISLre2 | Lactobacillus casei | 30 | 2.1 | |
| IS1163 | IS3 | IS3 | Lactobacillus sake | 30 | 2.1 |
| ISEc61 | IS5 | IS1031 | Escherichia coli | 28 | 8.4 |
| ISNamo10 | IS6 | Natronomonas moolapensis | 28 | 8.4 | |
| ISNamo9 | IS6 | Natronomonas moolapensis | 28 | 8.4 | |
| ISNamo8 | IS6 | Natronomonas moolapensis | 28 | 8.4 | |
| ISAzs18 | IS66 | Azospirillum sp. | 28 | 8.4 | |
| ISDisp1 | IS5 | Diaphorobacter sp. | 28 | 8.4 | |
| ISAcr5 | IS1380 | Acidiphilium cryptum | 28 | 8.4 | |
| ISDeac1 | IS1380 | Delftia acidovorans | 28 | 8.4 | |
| ISAde1 | IS66 | Anaeromyxobacter dehalogenans | 28 | 8.4 | |
| ISAnsp10 | IS630 | Anaeromyxobacter sp. | 28 | 8.4 | |
| ISCARN47 | IS256 | Metagenomic data from CARNOULES | 28 | 8.4 | |
| ISCARN20 | IS110 | Metagenomic data from CARNOULES | 28 | 8.4 | |
| ISAli20 | Tn3 | Azospirillum lipoferum | 28 | 8.4 | |
| ISAli2 | IS630 | Azospirillum lipoferum | 28 | 8.4 | |
| ISUnCu3 | IS21 | Uncultured bacterium | 28 | 8.4 | |
| ISAzo9 | IS630 | Azoarcus sp. | 28 | 8.4 | |
| ISRm21 | ISAs1 | Sinorhizobium meliloti | 28 | 8.4 | |
| ISSfr2 | IS110 | IS1111 | Ensifer fredii | 28 | 8.4 |
| ISGur5 | IS3 | IS3 | Geobacter uraniireducens | 28 | 8.4 |
| ISGme7 | IS3 | IS407 | Geobacter metallireducens | 28 | 8.4 |
| ISNisp3 | IS3 | IS407 | Nitrobacter sp. | 28 | 8.4 |
| ISLysp1 | IS1 | Lyngbya sp. | 28 | 8.4 | |
| ISLin2 | IS3 | IS3 | Leptospira interrogans | 28 | 8.4 |
| ISDpr3 | IS3 | IS3 | delta proteobacterium | 28 | 8.4 |
| ISCc3 | IS3 | IS150 | Caulobacter crescentus | 28 | 8.4 |
| ISRm5 | IS256 | - | Rhizobium meliloti | 28 | 8.4 |
| ISAav1 | IS21 | - | Acidovorax avenae | 28 | 8.4 |
| ISPsy6 | IS1182 | Pseudomonas syringae | 28 | 8.4 | |
| IS1500B | IS3 | IS3 | Leptospira interrogans | 28 | 8.4 |
| IS1500A | IS3 | IS3 | Leptospira interrogans | 28 | 8.4 |
| IS1490 | IS256 | - | Burkholderia cepacia | 28 | 8.4 |
| IS1356 | IS256 | - | Burkholderia cepacia | 28 | 8.4 |
| IS116 | IS110 | - | Streptomyces clavuligerus | 28 | 8.4 |
>ISDde3
Length = 1278
Score = 34.2 bits (17), Expect = 0.14
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 34 ccttggccatcttcagc 50
|||||||||||||||||
Sbjct: 339 ccttggccatcttcagc 355
>ISAzs24
Length = 1325
Score = 32.2 bits (16), Expect = 0.54
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 366 cattccagacccgtcg 381
||||||||||||||||
Sbjct: 561 cattccagacccgtcg 546
>ISMyma10
Length = 1352
Score = 30.2 bits (15), Expect = 2.1
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 78 ccgagccgcggccgg 92
|||||||||||||||
Sbjct: 619 ccgagccgcggccgg 633
>ISAzs17
Length = 7252
Score = 30.2 bits (15), Expect = 2.1
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 86 cggccggttgatcag 100
|||||||||||||||
Sbjct: 2847 cggccggttgatcag 2861
>ISSro1
Length = 897
Score = 30.2 bits (15), Expect = 2.1
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 157 cgccaccgcgaacaa 171
|||||||||||||||
Sbjct: 697 cgccaccgcgaacaa 711
>ISMex28
Length = 1310
Score = 30.2 bits (15), Expect = 2.1
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 14 ccgcttgcccgggttgagc 32
||||||| |||||||||||
Sbjct: 486 ccgcttgaccgggttgagc 468
>ISAZo16
Length = 2485
Score = 30.2 bits (15), Expect = 2.1
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 157 cgccaccgcgaacaa 171
|||||||||||||||
Sbjct: 1615 cgccaccgcgaacaa 1601
>ISAli7
Length = 1416
Score = 30.2 bits (15), Expect = 2.1
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 120 aagccgacgtcgaag 134
|||||||||||||||
Sbjct: 254 aagccgacgtcgaag 268
>ISLca4
Length = 1595
Score = 30.2 bits (15), Expect = 2.1
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 307 tgagcttgcgattca 321
|||||||||||||||
Sbjct: 957 tgagcttgcgattca 943
>IS1163
Length = 1180
Score = 30.2 bits (15), Expect = 2.1
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 138 gcgttgtgaatgatc 152
|||||||||||||||
Sbjct: 686 gcgttgtgaatgatc 672
>ISEc61
Length = 954
Score = 28.2 bits (14), Expect = 8.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 54 tcgatcaccccggc 67
||||||||||||||
Sbjct: 452 tcgatcaccccggc 439
>ISNamo10
Length = 697
Score = 28.2 bits (14), Expect = 8.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 68 gcagataccgccga 81
||||||||||||||
Sbjct: 630 gcagataccgccga 643
>ISNamo9
Length = 696
Score = 28.2 bits (14), Expect = 8.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 68 gcagataccgccga 81
||||||||||||||
Sbjct: 629 gcagataccgccga 642
>ISNamo8
Length = 696
Score = 28.2 bits (14), Expect = 8.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 68 gcagataccgccga 81
||||||||||||||
Sbjct: 629 gcagataccgccga 642
>ISAzs18
Length = 2633
Score = 28.2 bits (14), Expect = 8.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 73 taccgccgagccgc 86
||||||||||||||
Sbjct: 975 taccgccgagccgc 988
Score = 28.2 bits (14), Expect = 8.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 75 ccgccgagccgcgg 88
||||||||||||||
Sbjct: 1274 ccgccgagccgcgg 1287
>ISDisp1
Length = 1321
Score = 28.2 bits (14), Expect = 8.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 174 tcttcgaactcagc 187
||||||||||||||
Sbjct: 1269 tcttcgaactcagc 1282
>ISAcr5
Length = 1618
Score = 28.2 bits (14), Expect = 8.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 388 tatccagcacaatc 401
||||||||||||||
Sbjct: 566 tatccagcacaatc 553
>ISDeac1
Length = 1736
Score = 28.2 bits (14), Expect = 8.4
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 9 gtggcccgcttgcccggg 26
|||| |||||||||||||
Sbjct: 715 gtgggccgcttgcccggg 698
>ISAde1
Length = 2957
Score = 28.2 bits (14), Expect = 8.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 99 agcgtcagctcgtt 112
||||||||||||||
Sbjct: 2059 agcgtcagctcgtt 2046
>ISAnsp10
Length = 1185
Score = 28.2 bits (14), Expect = 8.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 79 cgagccgcggccgg 92
||||||||||||||
Sbjct: 299 cgagccgcggccgg 312
>ISCARN47
Length = 1368
Score = 28.2 bits (14), Expect = 8.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 76 cgccgagccgcggc 89
||||||||||||||
Sbjct: 1328 cgccgagccgcggc 1341
>ISCARN20
Length = 1628
Score = 28.2 bits (14), Expect = 8.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 38 ggccatcttcagcg 51
||||||||||||||
Sbjct: 1331 ggccatcttcagcg 1318
>ISAli20
Length = 3828
Score = 28.2 bits (14), Expect = 8.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 25 ggttgagctccttg 38
||||||||||||||
Sbjct: 2074 ggttgagctccttg 2061
>ISAli2
Length = 1171
Score = 28.2 bits (14), Expect = 8.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 257 cggatcgctatcgc 270
||||||||||||||
Sbjct: 119 cggatcgctatcgc 106
>ISUnCu3
Length = 2596
Score = 28.2 bits (14), Expect = 8.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 212 gtcggcgagaaact 225
||||||||||||||
Sbjct: 594 gtcggcgagaaact 607
>ISAzo9
Length = 1483
Score = 28.2 bits (14), Expect = 8.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 303 ccggtgagcttgcg 316
||||||||||||||
Sbjct: 613 ccggtgagcttgcg 600
>ISRm21
Length = 1167
Score = 28.2 bits (14), Expect = 8.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 327 tcgacgcagccgat 340
||||||||||||||
Sbjct: 834 tcgacgcagccgat 821
>ISSfr2
Length = 1534
Score = 28.2 bits (14), Expect = 8.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 305 ggtgagcttgcgat 318
||||||||||||||
Sbjct: 1112 ggtgagcttgcgat 1099
>ISGur5
Length = 1760
Score = 28.2 bits (14), Expect = 8.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 308 gagcttgcgattca 321
||||||||||||||
Sbjct: 80 gagcttgcgattca 93
>ISGme7
Length = 1305
Score = 28.2 bits (14), Expect = 8.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 307 tgagcttgcgattc 320
||||||||||||||
Sbjct: 315 tgagcttgcgattc 302
>ISNisp3
Length = 1234
Score = 28.2 bits (14), Expect = 8.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 149 gatcagctcgccac 162
||||||||||||||
Sbjct: 723 gatcagctcgccac 736
>ISLysp1
Length = 981
Score = 28.2 bits (14), Expect = 8.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 217 cgagaaactcgttg 230
||||||||||||||
Sbjct: 851 cgagaaactcgttg 838
>ISLin2
Length = 1236
Score = 28.2 bits (14), Expect = 8.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 162 ccgcgaacaaaatc 175
||||||||||||||
Sbjct: 336 ccgcgaacaaaatc 349
>ISDpr3
Length = 1224
Score = 28.2 bits (14), Expect = 8.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 34 ccttggccatcttc 47
||||||||||||||
Sbjct: 322 ccttggccatcttc 335
>ISCc3
Length = 1514
Score = 28.2 bits (14), Expect = 8.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 298 gacgcccggtgagc 311
||||||||||||||
Sbjct: 115 gacgcccggtgagc 128
>ISRm5
Length = 1340
Score = 28.2 bits (14), Expect = 8.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 320 caccagttcgacgc 333
||||||||||||||
Sbjct: 777 caccagttcgacgc 764
>ISAav1
Length = 2532
Score = 28.2 bits (14), Expect = 8.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 345 atcacccggtcgcc 358
||||||||||||||
Sbjct: 1396 atcacccggtcgcc 1383
>ISPsy6
Length = 1603
Score = 28.2 bits (14), Expect = 8.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 88 gccggttgatcagc 101
||||||||||||||
Sbjct: 375 gccggttgatcagc 362
>IS1500B
Length = 1235
Score = 28.2 bits (14), Expect = 8.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 162 ccgcgaacaaaatc 175
||||||||||||||
Sbjct: 336 ccgcgaacaaaatc 349
>IS1500A
Length = 1235
Score = 28.2 bits (14), Expect = 8.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 162 ccgcgaacaaaatc 175
||||||||||||||
Sbjct: 336 ccgcgaacaaaatc 349
>IS1490
Length = 1433
Score = 28.2 bits (14), Expect = 8.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 206 aggcttgtcggcga 219
||||||||||||||
Sbjct: 534 aggcttgtcggcga 547
>IS1356
Length = 1354
Score = 28.2 bits (14), Expect = 8.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 31 gctccttggccatc 44
||||||||||||||
Sbjct: 50 gctccttggccatc 37
>IS116
Length = 1421
Score = 28.2 bits (14), Expect = 8.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 88 gccggttgatcagc 101
||||||||||||||
Sbjct: 666 gccggttgatcagc 653
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_69_length_410_cov_0.777778_ID_5310
(410 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISTni2 | IS481 | Thioalkalivibrio nitratireducens | 32 | 0.53 | |
| ISThsp9 | Tn3 | Thiomonas sp. | 32 | 0.53 | |
| ISPath1 | IS110 | IS1111 | Pandoraea thiooxydans | 30 | 2.1 |
| ISTdr1 | IS256 | Thiorhodococcus drewsii | 30 | 2.1 | |
| ISAzs3 | IS1380 | Azospirillum sp. | 30 | 2.1 | |
| ISRjo1 | IS1380 | Rhodococcus jostii | 30 | 2.1 | |
| ISMdi27 | IS21 | Methylobacterium dichloromethanicum | 30 | 2.1 | |
| ISCARN55 | IS256 | Metagenomic data from CARNOULES | 30 | 2.1 | |
| ISHlsp1 | IS200/IS605 | IS605 | Halopiger sp. | 28 | 8.2 |
| ISPebe1 | IS256 | Pelagibaca bermudensis | 28 | 8.2 | |
| ISUnCu14 | IS66 | Uncultured bacterium | 28 | 8.2 | |
| ISRhru4 | IS256 | Rhodospirillum rubrum | 28 | 8.2 | |
| ISMtsp13 | IS256 | Methylobacterium sp. | 28 | 8.2 | |
| ISAcma50 | IS21 | Acaryochloris marina | 28 | 8.2 | |
| ISAcma38 | IS21 | Acaryochloris marina | 28 | 8.2 | |
| ISNml2 | IS1380 | Nakamurella multipartita | 28 | 8.2 | |
| ISMdi14 | IS110 | IS1111 | Methylobacterium dichloromethanicum | 28 | 8.2 |
| ISMdi9 | IS110 | IS1111 | Methylobacterium dichloromethanicum | 28 | 8.2 |
| ISCARN21 | IS630 | Metagenomic data from CARNOULES | 28 | 8.2 | |
| ISRfsp1 | IS66 | ISBst12 | Roseiflexus sp. | 28 | 8.2 |
| ISFsp10 | IS66 | ISBst12 | Frankia sp. | 28 | 8.2 |
| ISRta3 | IS110 | Ralstonia taiwanensis | 28 | 8.2 | |
| ISRhba1 | IS1595 | ISNwi1 | Rhodobacterales bacterium | 28 | 8.2 |
| ISGvi4 | IS4 | IS4Sa | Gloeobacter violaceus | 28 | 8.2 |
| ISCef3 | IS982 | Corynebacterium efficiens | 28 | 8.2 | |
| ISSsp126 | IS5 | IS5 | Sphingomonas sp. | 28 | 8.2 |
| IS493 | IS5 | ISL2 | Streptomyces lividans | 28 | 8.2 |
| IS1311 | IS256 | - | Mycobacterium avium | 28 | 8.2 |
| IS1245 | IS256 | - | Mycobacterium avium | 28 | 8.2 |
>ISTni2
Length = 3451
Score = 32.2 bits (16), Expect = 0.53
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 245 cgatcaggagcacggc 260
||||||||||||||||
Sbjct: 2639 cgatcaggagcacggc 2624
>ISThsp9
Length = 6215
Score = 32.2 bits (16), Expect = 0.53
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 64 atgcggccgatttcgg 79
||||||||||||||||
Sbjct: 4412 atgcggccgatttcgg 4397
>ISPath1
Length = 1357
Score = 30.2 bits (15), Expect = 2.1
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 86 tgcgggcgcgagcgc 100
|||||||||||||||
Sbjct: 1068 tgcgggcgcgagcgc 1082
>ISTdr1
Length = 1384
Score = 30.2 bits (15), Expect = 2.1
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 337 cgatcatctcggcgc 351
|||||||||||||||
Sbjct: 658 cgatcatctcggcgc 644
>ISAzs3
Length = 1613
Score = 30.2 bits (15), Expect = 2.1
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 59 ggggcatgcggccga 73
|||||||||||||||
Sbjct: 1432 ggggcatgcggccga 1418
>ISRjo1
Length = 1967
Score = 30.2 bits (15), Expect = 2.1
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 235 atcgcggcaccgatc 249
|||||||||||||||
Sbjct: 1003 atcgcggcaccgatc 989
>ISMdi27
Length = 2476
Score = 30.2 bits (15), Expect = 2.1
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 88 cgggcgcgagcgcgc 102
|||||||||||||||
Sbjct: 727 cgggcgcgagcgcgc 741
>ISCARN55
Length = 1364
Score = 30.2 bits (15), Expect = 2.1
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 335 gccgatcatctcggcgccg 353
||||| |||||||||||||
Sbjct: 221 gccgagcatctcggcgccg 239
>ISHlsp1
Length = 1853
Score = 28.2 bits (14), Expect = 8.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 157 cgggtgtcgggctt 170
||||||||||||||
Sbjct: 59 cgggtgtcgggctt 46
>ISPebe1
Length = 1363
Score = 28.2 bits (14), Expect = 8.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 334 agccgatcatctcg 347
||||||||||||||
Sbjct: 175 agccgatcatctcg 162
>ISUnCu14
Length = 2442
Score = 28.2 bits (14), Expect = 8.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 320 gtaagcggtgttcc 333
||||||||||||||
Sbjct: 2442 gtaagcggtgttcc 2429
>ISRhru4
Length = 1411
Score = 28.2 bits (14), Expect = 8.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 334 agccgatcatctcg 347
||||||||||||||
Sbjct: 229 agccgatcatctcg 216
>ISMtsp13
Length = 1428
Score = 28.2 bits (14), Expect = 8.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 334 agccgatcatctcg 347
||||||||||||||
Sbjct: 240 agccgatcatctcg 227
>ISAcma50
Length = 2718
Score = 28.2 bits (14), Expect = 8.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 377 ctctctgcagatgt 390
||||||||||||||
Sbjct: 96 ctctctgcagatgt 83
>ISAcma38
Length = 2708
Score = 28.2 bits (14), Expect = 8.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 377 ctctctgcagatgt 390
||||||||||||||
Sbjct: 101 ctctctgcagatgt 88
>ISNml2
Length = 1689
Score = 28.2 bits (14), Expect = 8.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 358 caccacggcggacc 371
||||||||||||||
Sbjct: 786 caccacggcggacc 799
>ISMdi14
Length = 1316
Score = 28.2 bits (14), Expect = 8.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 215 cgctgcaggcggcc 228
||||||||||||||
Sbjct: 938 cgctgcaggcggcc 951
>ISMdi9
Length = 1399
Score = 28.2 bits (14), Expect = 8.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 206 gcggcacttcgctg 219
||||||||||||||
Sbjct: 1314 gcggcacttcgctg 1327
>ISCARN21
Length = 1249
Score = 28.2 bits (14), Expect = 8.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 59 ggggcatgcggccg 72
||||||||||||||
Sbjct: 347 ggggcatgcggccg 334
>ISRfsp1
Length = 1503
Score = 28.2 bits (14), Expect = 8.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 338 gatcatctcggcgc 351
||||||||||||||
Sbjct: 409 gatcatctcggcgc 422
>ISFsp10
Length = 1713
Score = 28.2 bits (14), Expect = 8.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 88 cgggcgcgagcgcg 101
||||||||||||||
Sbjct: 1208 cgggcgcgagcgcg 1195
>ISRta3
Length = 1574
Score = 28.2 bits (14), Expect = 8.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 91 gcgcgagcgcgcat 104
||||||||||||||
Sbjct: 410 gcgcgagcgcgcat 423
>ISRhba1
Length = 2457
Score = 28.2 bits (14), Expect = 8.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 306 tgctcaccagcgcc 319
||||||||||||||
Sbjct: 349 tgctcaccagcgcc 362
>ISGvi4
Length = 1160
Score = 28.2 bits (14), Expect = 8.2
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 373 cccgctctctgcagatgt 390
|||| |||||||||||||
Sbjct: 300 cccgttctctgcagatgt 317
>ISCef3
Length = 989
Score = 28.2 bits (14), Expect = 8.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 222 ggcggccagggcca 235
||||||||||||||
Sbjct: 907 ggcggccagggcca 894
>ISSsp126
Length = 1293
Score = 28.2 bits (14), Expect = 8.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 357 ccaccacggcggac 370
||||||||||||||
Sbjct: 169 ccaccacggcggac 156
>IS493
Length = 1643
Score = 28.2 bits (14), Expect = 8.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 167 gcttgcccgagtag 180
||||||||||||||
Sbjct: 1230 gcttgcccgagtag 1217
>IS1311
Length = 1416
Score = 28.2 bits (14), Expect = 8.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 227 ccagggccatcgcg 240
||||||||||||||
Sbjct: 126 ccagggccatcgcg 113
>IS1245
Length = 1414
Score = 28.2 bits (14), Expect = 8.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 227 ccagggccatcgcg 240
||||||||||||||
Sbjct: 128 ccagggccatcgcg 115
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_70_length_397_cov_1.36563_ID_5312
(397 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISMdi25 | IS30 | Methylobacterium dichloromethanicum | 34 | 0.13 | |
| ISSaci1 | ISAzo13 | Streptomyces acidiscabies | 32 | 0.51 | |
| ISAzba9 | ISL3 | Azospirillum brasilense | 32 | 0.51 | |
| ISAzs8 | ISL3 | Azospirillum sp. | 32 | 0.51 | |
| ISRer1 | IS1380 | Rhodococcus erythropolis | 32 | 0.51 | |
| ISAde4 | IS3 | IS407 | Anaeromyxobacter dehalogenans | 32 | 0.51 |
| ISAeca3 | IS110 | IS1111 | Aeromonas caviae | 30 | 2.0 |
| ISDisp1 | IS5 | Diaphorobacter sp. | 30 | 2.0 | |
| ISThsp14 | ISL3 | Thiomonas sp. | 30 | 2.0 | |
| ISCARN74 | IS5 | IS5 | Metagenomic data from CARNOULES | 30 | 2.0 |
| ISGdi1 | IS5 | IS1031 | Gluconacetobacter diazotrophicus | 30 | 2.0 |
| ISFsp11 | IS66 | ISBst12 | Frankia sp. | 30 | 2.0 |
| ISVva1 | IS1380 | Victivallis vadensis | 30 | 2.0 | |
| ISMsm6 | IS1634 | Mycobacterium smegmatis | 30 | 2.0 | |
| ISRta1 | ISL3 | Ralstonia taiwanensis | 30 | 2.0 | |
| ISPst3 | IS21 | Pseudomonas stutzeri | 30 | 2.0 | |
| ISMysp5 | IS481 | Mycobacterium sp. | 30 | 2.0 | |
| ISGme2 | IS4 | IS4Sa | Geobacter metallireducens | 30 | 2.0 |
| ISBma1 | ISL3 | - | Burkholderia mallei | 30 | 2.0 |
| IS861 | IS3 | IS150 | Streptococcus agalactiae | 30 | 2.0 |
| IS1408 | IS256 | - | Mycobacterium branderi | 30 | 2.0 |
| IS1001 | ISL3 | - | Bordetella parapertussis | 30 | 2.0 |
| ISMyma11 | ISNCY | ISDol1 | Mycobacterium marinum | 28 | 7.9 |
| ISHwa19 | IS200/IS605 | IS1341 | Haloquadratum walsbyi | 28 | 7.9 |
| ISHarch9 | IS200/IS605 | IS1341 | Halophilic archaeon | 28 | 7.9 |
| ISAba30 | IS200/IS605 | Acinetobacter baumannii | 28 | 7.9 | |
| ISNpe20 | IS200/IS605 | IS1341 | Natrinema pellirubrum | 28 | 7.9 |
| ISBco6 | ISLre2 | Bacillus coagulans | 28 | 7.9 | |
| ISRjo4 | IS256 | Rhodococcus jostii | 28 | 7.9 | |
| ISWpi15 | IS256 | Wolbachia pipientis | 28 | 7.9 | |
| ISSpn10 | IS110 | Streptococcus pneumoniae | 28 | 7.9 | |
| ISNph15 | IS200/IS605 | IS1341 | Natronomonas pharaonis | 28 | 7.9 |
| ISRel16 | IS21 | Rhizobium etli | 28 | 7.9 | |
| ISPaes2 | IS5 | IS427 | Paracoccus aestuarii | 28 | 7.9 |
| ISXca5 | IS5 | IS5 | Xanthomonas campestris | 28 | 7.9 |
| ISRsp5 | IS5 | Rhizobium sp. | 28 | 7.9 | |
| ISBaps1 | IS66 | Bacillus pseudomycoides | 28 | 7.9 | |
| ISPfr21 | IS481 | Propionibacterium freudenreichii | 28 | 7.9 | |
| ISPfr18 | ISL3 | Propionibacterium freudenreichii | 28 | 7.9 | |
| ISThsp10 | IS21 | Thiomonas sp. | 28 | 7.9 | |
| ISAzo14 | IS1634 | Azoarcus sp. | 28 | 7.9 | |
| ISCARN4 | IS21 | Metagenomic data from CARNOULES | 28 | 7.9 | |
| ISAli10 | IS66 | Azospirillum lipoferum | 28 | 7.9 | |
| ISCku6 | IS66 | ISBst12 | Candidatus Kuenenia stuttgartiensis | 28 | 7.9 |
| ISRssp2 | IS1595 | ISNha5 | Roseovarius sp. | 28 | 7.9 |
| ISPre4 | IS21 | Pseudomonas resinovorans | 28 | 7.9 | |
| ISDge1 | IS701 | Deinococcus geothermalis | 28 | 7.9 | |
| ISLxx4 | IS481 | Leifsonia xyli | 28 | 7.9 | |
| ISBlo4 | IS30 | Bifidobacterium longum | 28 | 7.9 | |
| ISPsy14 | IS21 | Pseudomonas syringae | 28 | 7.9 | |
| ISFlsp1 | IS21 | Flavobacterium sp | 28 | 7.9 | |
| ISEhe5 | IS1 | - | Pantoea agglomerans | 28 | 7.9 |
| ISPa45 | IS4 | IS4 | Pseudomonas aeruginosa | 28 | 7.9 |
>ISMdi25
Length = 1601
Score = 34.2 bits (17), Expect = 0.13
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 209 acggccccggcgagccgatcc 229
||||| |||||||||||||||
Sbjct: 447 acggcgccggcgagccgatcc 427
>ISSaci1
Length = 1747
Score = 32.2 bits (16), Expect = 0.51
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 225 gatccgcgtggtggcc 240
||||||||||||||||
Sbjct: 179 gatccgcgtggtggcc 194
>ISAzba9
Length = 1847
Score = 32.2 bits (16), Expect = 0.51
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 94 ctcaaggtcatcaagc 109
||||||||||||||||
Sbjct: 1713 ctcaaggtcatcaagc 1728
>ISAzs8
Length = 1373
Score = 32.2 bits (16), Expect = 0.51
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 94 ctcaaggtcatcaagc 109
||||||||||||||||
Sbjct: 1222 ctcaaggtcatcaagc 1237
>ISRer1
Length = 1687
Score = 32.2 bits (16), Expect = 0.51
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 150 ggccaacacgctgatc 165
||||||||||||||||
Sbjct: 439 ggccaacacgctgatc 424
>ISAde4
Length = 1183
Score = 32.2 bits (16), Expect = 0.51
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 124 cgctccagcgcgcgca 139
||||||||||||||||
Sbjct: 826 cgctccagcgcgcgca 811
>ISAeca3
Length = 1340
Score = 30.2 bits (15), Expect = 2.0
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 148 gcggccaacacgctg 162
|||||||||||||||
Sbjct: 753 gcggccaacacgctg 739
>ISDisp1
Length = 1321
Score = 30.2 bits (15), Expect = 2.0
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 292 caccgcttcgaattc 306
|||||||||||||||
Sbjct: 226 caccgcttcgaattc 212
>ISThsp14
Length = 1302
Score = 30.2 bits (15), Expect = 2.0
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 95 tcaaggtcatcaagc 109
|||||||||||||||
Sbjct: 1208 tcaaggtcatcaagc 1222
>ISCARN74
Length = 1203
Score = 30.2 bits (15), Expect = 2.0
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 135 gcgcatcctcggcgc 149
|||||||||||||||
Sbjct: 308 gcgcatcctcggcgc 294
>ISGdi1
Length = 930
Score = 30.2 bits (15), Expect = 2.0
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 34 tacgcctggcgcggtgccg 52
||||||||||| |||||||
Sbjct: 323 tacgcctggcgtggtgccg 341
>ISFsp11
Length = 1836
Score = 30.2 bits (15), Expect = 2.0
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 12 gggcgacgacgaccaggcc 30
||||| |||||||||||||
Sbjct: 1354 gggcggcgacgaccaggcc 1336
>ISVva1
Length = 1741
Score = 30.2 bits (15), Expect = 2.0
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 339 tcgcggcaaccacca 353
|||||||||||||||
Sbjct: 1043 tcgcggcaaccacca 1029
>ISMsm6
Length = 1765
Score = 30.2 bits (15), Expect = 2.0
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 96 caaggtcatcaagct 110
|||||||||||||||
Sbjct: 1610 caaggtcatcaagct 1624
>ISRta1
Length = 1303
Score = 30.2 bits (15), Expect = 2.0
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 95 tcaaggtcatcaagc 109
|||||||||||||||
Sbjct: 1209 tcaaggtcatcaagc 1223
>ISPst3
Length = 2606
Score = 30.2 bits (15), Expect = 2.0
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 363 gttcgaaaagcagctgcgc 381
|||| ||||||||||||||
Sbjct: 2490 gttcaaaaagcagctgcgc 2508
>ISMysp5
Length = 1117
Score = 30.2 bits (15), Expect = 2.0
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 33 ctacgcctggcgcggtgcc 51
|||||||||||||| ||||
Sbjct: 855 ctacgcctggcgcgatgcc 873
>ISGme2
Length = 1314
Score = 30.2 bits (15), Expect = 2.0
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 182 tgttcgagaaaaagc 196
|||||||||||||||
Sbjct: 1204 tgttcgagaaaaagc 1218
>ISBma1
Length = 1305
Score = 30.2 bits (15), Expect = 2.0
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 95 tcaaggtcatcaagc 109
|||||||||||||||
Sbjct: 1211 tcaaggtcatcaagc 1225
>IS861
Length = 1442
Score = 30.2 bits (15), Expect = 2.0
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 94 ctcaaggtcatcaag 108
|||||||||||||||
Sbjct: 1308 ctcaaggtcatcaag 1294
>IS1408
Length = 1325
Score = 30.2 bits (15), Expect = 2.0
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 155 acacgctgatcgcca 169
|||||||||||||||
Sbjct: 601 acacgctgatcgcca 615
>IS1001
Length = 1306
Score = 30.2 bits (15), Expect = 2.0
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 95 tcaaggtcatcaagc 109
|||||||||||||||
Sbjct: 1212 tcaaggtcatcaagc 1226
>ISMyma11
Length = 1584
Score = 28.2 bits (14), Expect = 7.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 35 acgcctggcgcggt 48
||||||||||||||
Sbjct: 1175 acgcctggcgcggt 1188
>ISHwa19
Length = 1482
Score = 28.2 bits (14), Expect = 7.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 331 attctctatcgcgg 344
||||||||||||||
Sbjct: 1325 attctctatcgcgg 1338
>ISHarch9
Length = 1429
Score = 28.2 bits (14), Expect = 7.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 55 gtcgaaaacctgaa 68
||||||||||||||
Sbjct: 995 gtcgaaaacctgaa 1008
>ISAba30
Length = 1770
Score = 28.2 bits (14), Expect = 7.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 103 atcaagctggagca 116
||||||||||||||
Sbjct: 864 atcaagctggagca 877
>ISNpe20
Length = 1529
Score = 28.2 bits (14), Expect = 7.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 87 cccgcgcctcaagg 100
||||||||||||||
Sbjct: 37 cccgcgcctcaagg 24
>ISBco6
Length = 1823
Score = 28.2 bits (14), Expect = 7.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 326 acgccattctctat 339
||||||||||||||
Sbjct: 706 acgccattctctat 719
>ISRjo4
Length = 1458
Score = 28.2 bits (14), Expect = 7.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 372 gcagctgcgcaaca 385
||||||||||||||
Sbjct: 807 gcagctgcgcaaca 794
>ISWpi15
Length = 1345
Score = 28.2 bits (14), Expect = 7.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 321 cgactacgccattc 334
||||||||||||||
Sbjct: 560 cgactacgccattc 547
>ISSpn10
Length = 1536
Score = 28.2 bits (14), Expect = 7.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 345 caaccaccaggcgc 358
||||||||||||||
Sbjct: 1334 caaccaccaggcgc 1321
>ISNph15
Length = 1476
Score = 28.2 bits (14), Expect = 7.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 331 attctctatcgcgg 344
||||||||||||||
Sbjct: 1317 attctctatcgcgg 1330
>ISRel16
Length = 2597
Score = 28.2 bits (14), Expect = 7.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 174 cgaaaagctgttcg 187
||||||||||||||
Sbjct: 599 cgaaaagctgttcg 612
>ISPaes2
Length = 841
Score = 28.2 bits (14), Expect = 7.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 121 tatcgctccagcgc 134
||||||||||||||
Sbjct: 271 tatcgctccagcgc 258
>ISXca5
Length = 1514
Score = 28.2 bits (14), Expect = 7.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 150 ggccaacacgctga 163
||||||||||||||
Sbjct: 1214 ggccaacacgctga 1227
>ISRsp5
Length = 1320
Score = 28.2 bits (14), Expect = 7.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 128 ccagcgcgcgcatc 141
||||||||||||||
Sbjct: 176 ccagcgcgcgcatc 163
>ISBaps1
Length = 2424
Score = 28.2 bits (14), Expect = 7.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 96 caaggtcatcaagc 109
||||||||||||||
Sbjct: 720 caaggtcatcaagc 733
>ISPfr21
Length = 2632
Score = 28.2 bits (14), Expect = 7.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 228 ccgcgtggtggcct 241
||||||||||||||
Sbjct: 1872 ccgcgtggtggcct 1859
>ISPfr18
Length = 1437
Score = 28.2 bits (14), Expect = 7.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 249 tccggaagccgagg 262
||||||||||||||
Sbjct: 1347 tccggaagccgagg 1334
>ISThsp10
Length = 2501
Score = 28.2 bits (14), Expect = 7.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 68 atctgctgcagacc 81
||||||||||||||
Sbjct: 620 atctgctgcagacc 633
>ISAzo14
Length = 1925
Score = 28.2 bits (14), Expect = 7.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 142 ctcggcgcggccaa 155
||||||||||||||
Sbjct: 277 ctcggcgcggccaa 264
>ISCARN4
Length = 2599
Score = 28.2 bits (14), Expect = 7.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 278 tgcgtatccaggcg 291
||||||||||||||
Sbjct: 1572 tgcgtatccaggcg 1585
>ISAli10
Length = 2584
Score = 28.2 bits (14), Expect = 7.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 210 cggccccggcgagc 223
||||||||||||||
Sbjct: 1308 cggccccggcgagc 1321
>ISCku6
Length = 2571
Score = 28.2 bits (14), Expect = 7.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 160 ctgatcgccaataa 173
||||||||||||||
Sbjct: 664 ctgatcgccaataa 677
>ISRssp2
Length = 4633
Score = 28.2 bits (14), Expect = 7.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 92 gcctcaaggtcatc 105
||||||||||||||
Sbjct: 642 gcctcaaggtcatc 655
>ISPre4
Length = 2575
Score = 28.2 bits (14), Expect = 7.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 174 cgaaaagctgttcg 187
||||||||||||||
Sbjct: 576 cgaaaagctgttcg 589
>ISDge1
Length = 1394
Score = 28.2 bits (14), Expect = 7.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 347 accaccaggcgcgc 360
||||||||||||||
Sbjct: 1321 accaccaggcgcgc 1334
>ISLxx4
Length = 1110
Score = 28.2 bits (14), Expect = 7.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 217 ggcgagccgatccg 230
||||||||||||||
Sbjct: 483 ggcgagccgatccg 496
>ISBlo4
Length = 1399
Score = 28.2 bits (14), Expect = 7.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 23 accaggccatctac 36
||||||||||||||
Sbjct: 686 accaggccatctac 699
>ISPsy14
Length = 2597
Score = 28.2 bits (14), Expect = 7.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 174 cgaaaagctgttcg 187
||||||||||||||
Sbjct: 598 cgaaaagctgttcg 611
>ISFlsp1
Length = 2669
Score = 28.2 bits (14), Expect = 7.9
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 78 gaccgactacccgcgcct 95
|||||| |||||||||||
Sbjct: 1581 gaccgaatacccgcgcct 1598
>ISEhe5
Length = 785
Score = 28.2 bits (14), Expect = 7.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 58 gaaaacctgaatct 71
||||||||||||||
Sbjct: 633 gaaaacctgaatct 646
>ISPa45
Length = 1637
Score = 28.2 bits (14), Expect = 7.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 353 aggcgcgcctgttc 366
||||||||||||||
Sbjct: 841 aggcgcgcctgttc 854
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_71_length_374_cov_0.858586_ID_5314
(374 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISSm4 | ISL3 | Serratia marcescens | 32 | 0.48 | |
| ISStma9 | IS3 | IS51 | Stenotrophomonas maltophilia | 32 | 0.48 |
| ISAisp2 | IS3 | IS51 | Acidovorax sp. | 32 | 0.48 |
| ISXci1 | IS21 | Xanthomonas citri | 30 | 1.9 | |
| TnAs2 | Tn3 | Aeromonas salmonicida | 30 | 1.9 | |
| ISGlo5 | IS5 | Geobacter lovleyi | 30 | 1.9 | |
| ISRsp9 | IS6 | Rhizhobium sp. | 30 | 1.9 | |
| ISCARN75 | IS701 | Metagenomic data from CARNOULES | 30 | 1.9 | |
| ISMbov3 | IS1634 | - | Mycoplasma bovis | 30 | 1.9 |
| IS1634 | IS1634 | - | Mycoplasma mycoides | 30 | 1.9 |
| ISHala3 | IS200/IS605 | IS1341 | Halobiforma lacisalsi | 28 | 7.5 |
| ISAcif1 | ISNCY | ISMae2 | Acidithiobacillus ferrivorans | 28 | 7.5 |
| ISAra2 | ISKra4 | ISAzba1 | Agrobacterium radiobacter | 28 | 7.5 |
| ISAzs18 | IS66 | Azospirillum sp. | 28 | 7.5 | |
| ISRel24 | IS66 | Rhizobium etli | 28 | 7.5 | |
| ISStsp4 | IS5 | ISL2 | Streptomyces sp. | 28 | 7.5 |
| ISDal2 | IS5 | IS5 | Desulfatibacillum alkenivorans | 28 | 7.5 |
| ISRop2 | ISAzo13 | Rhodococcus opacus | 28 | 7.5 | |
| ISAtu6 | IS66 | - | Agrobacterium tumefaciens | 28 | 7.5 |
| ISAfe4 | IS66 | Acidithiobacillus ferrooxidans | 28 | 7.5 | |
| ISDsh3 | IS1595 | ISNha5 | Dinoroseobacter shibae | 28 | 7.5 |
| ISArch14 | IS66 | ISBst12 | uncultured archaeon | 28 | 7.5 |
| ISMul1 | ISAs1 | Mycobacterium ulcerans | 28 | 7.5 | |
| ISMaq1 | IS3 | IS407 | Marinobacter aquaeolei | 28 | 7.5 |
| ISTasp1 | IS5 | IS903 | Thalassiobium sp. | 28 | 7.5 |
| ISXa1 | ISAs1 | - | Xanthobacter autotrophicus | 28 | 7.5 |
| ISRsp2 | IS21 | - | Rhizobium sp. | 28 | 7.5 |
| ISRj1 | IS630 | - | Bradyrhizobium japonicum | 28 | 7.5 |
| ISCgl1 | IS481 | Corynebacterium glutamicum | 28 | 7.5 | |
| IS5Sa2 | IS5 | IS1031 | Synechocystis sp. | 28 | 7.5 |
| IS5564 | IS481 | Corynebacterium striatum | 28 | 7.5 | |
| IS2404 | ISAs1 | - | Mycobacterium ulcerans | 28 | 7.5 |
| IS1131 | IS66 | - | Agrobacterium tumefaciens | 28 | 7.5 |
>ISSm4
Length = 9109
Score = 32.2 bits (16), Expect = 0.48
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 181 gctcgcgcaggaagtccggg 200
||||||||||||||| ||||
Sbjct: 7456 gctcgcgcaggaagtgcggg 7437
>ISStma9
Length = 1234
Score = 32.2 bits (16), Expect = 0.48
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 179 gtgctcgcgcaggaag 194
||||||||||||||||
Sbjct: 968 gtgctcgcgcaggaag 953
>ISAisp2
Length = 1241
Score = 32.2 bits (16), Expect = 0.48
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 179 gtgctcgcgcaggaag 194
||||||||||||||||
Sbjct: 972 gtgctcgcgcaggaag 957
>ISXci1
Length = 2013
Score = 30.2 bits (15), Expect = 1.9
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 107 gaccaccagcagctt 121
|||||||||||||||
Sbjct: 1603 gaccaccagcagctt 1589
>TnAs2
Length = 8650
Score = 30.2 bits (15), Expect = 1.9
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 25 tcacgctgctgccgc 39
|||||||||||||||
Sbjct: 1357 tcacgctgctgccgc 1371
>ISGlo5
Length = 1325
Score = 30.2 bits (15), Expect = 1.9
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 353 gaagaccatcggcag 367
|||||||||||||||
Sbjct: 1041 gaagaccatcggcag 1055
>ISRsp9
Length = 818
Score = 30.2 bits (15), Expect = 1.9
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 164 cgccttaaccggcgggtgc 182
||||||||||||| |||||
Sbjct: 9 cgccttaaccggctggtgc 27
>ISCARN75
Length = 1369
Score = 30.2 bits (15), Expect = 1.9
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 286 ccttgctgccgaacc 300
|||||||||||||||
Sbjct: 848 ccttgctgccgaacc 834
>ISMbov3
Length = 1873
Score = 30.2 bits (15), Expect = 1.9
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 210 ttagtcgcgaaaaca 224
|||||||||||||||
Sbjct: 15 ttagtcgcgaaaaca 29
>IS1634
Length = 1873
Score = 30.2 bits (15), Expect = 1.9
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 210 ttagtcgcgaaaaca 224
|||||||||||||||
Sbjct: 15 ttagtcgcgaaaaca 29
>ISHala3
Length = 1468
Score = 28.2 bits (14), Expect = 7.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 96 tcccgcccgaagac 109
||||||||||||||
Sbjct: 557 tcccgcccgaagac 570
>ISAcif1
Length = 2464
Score = 28.2 bits (14), Expect = 7.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 74 cgcctgcagcaggt 87
||||||||||||||
Sbjct: 2064 cgcctgcagcaggt 2077
>ISAra2
Length = 2535
Score = 28.2 bits (14), Expect = 7.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 346 cggaggcgaagacc 359
||||||||||||||
Sbjct: 1228 cggaggcgaagacc 1241
>ISAzs18
Length = 2633
Score = 28.2 bits (14), Expect = 7.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 4 gctgtttgacatcg 17
||||||||||||||
Sbjct: 2115 gctgtttgacatcg 2128
>ISRel24
Length = 2837
Score = 28.2 bits (14), Expect = 7.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 71 cgccgcctgcagca 84
||||||||||||||
Sbjct: 311 cgccgcctgcagca 324
>ISStsp4
Length = 902
Score = 28.2 bits (14), Expect = 7.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 134 atccgggtggtcga 147
||||||||||||||
Sbjct: 835 atccgggtggtcga 822
>ISDal2
Length = 1478
Score = 28.2 bits (14), Expect = 7.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 256 ggaccgggaactgc 269
||||||||||||||
Sbjct: 840 ggaccgggaactgc 853
>ISRop2
Length = 2171
Score = 28.2 bits (14), Expect = 7.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 137 cgggtggtcgatca 150
||||||||||||||
Sbjct: 697 cgggtggtcgatca 710
>ISAtu6
Length = 2798
Score = 28.2 bits (14), Expect = 7.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 142 ggtcgatcatttca 155
||||||||||||||
Sbjct: 2719 ggtcgatcatttca 2706
>ISAfe4
Length = 2477
Score = 28.2 bits (14), Expect = 7.5
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 21 accgtcacgctgctgccg 38
|||| |||||||||||||
Sbjct: 2047 accggcacgctgctgccg 2030
>ISDsh3
Length = 3472
Score = 28.2 bits (14), Expect = 7.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 153 tcaatcgtcggcgc 166
||||||||||||||
Sbjct: 705 tcaatcgtcggcgc 718
>ISArch14
Length = 1560
Score = 28.2 bits (14), Expect = 7.5
Identities = 20/22 (90%)
Strand = Plus / Plus
Query: 82 gcaggtctttgtcatcccgccc 103
||||||||||| ||| ||||||
Sbjct: 473 gcaggtctttgacattccgccc 494
>ISMul1
Length = 1366
Score = 28.2 bits (14), Expect = 7.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 25 tcacgctgctgccg 38
||||||||||||||
Sbjct: 700 tcacgctgctgccg 713
>ISMaq1
Length = 1194
Score = 28.2 bits (14), Expect = 7.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 129 ggattatccgggtg 142
||||||||||||||
Sbjct: 648 ggattatccgggtg 661
>ISTasp1
Length = 1053
Score = 28.2 bits (14), Expect = 7.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 359 catcggcagcgtca 372
||||||||||||||
Sbjct: 630 catcggcagcgtca 643
>ISXa1
Length = 3041
Score = 28.2 bits (14), Expect = 7.5
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 283 ccgccttgctgccgaacc 300
||||| ||||||||||||
Sbjct: 2180 ccgccatgctgccgaacc 2197
>ISRsp2
Length = 2623
Score = 28.2 bits (14), Expect = 7.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 312 atggccgccgcctg 325
||||||||||||||
Sbjct: 1792 atggccgccgcctg 1805
>ISRj1
Length = 1122
Score = 28.2 bits (14), Expect = 7.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 163 gcgccttaaccggc 176
||||||||||||||
Sbjct: 637 gcgccttaaccggc 650
>ISCgl1
Length = 2435
Score = 28.2 bits (14), Expect = 7.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 284 cgccttgctgccga 297
||||||||||||||
Sbjct: 1940 cgccttgctgccga 1927
>IS5Sa2
Length = 908
Score = 28.2 bits (14), Expect = 7.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 244 gttggttgaactgg 257
||||||||||||||
Sbjct: 770 gttggttgaactgg 783
>IS5564
Length = 2437
Score = 28.2 bits (14), Expect = 7.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 284 cgccttgctgccga 297
||||||||||||||
Sbjct: 1939 cgccttgctgccga 1926
>IS2404
Length = 1279
Score = 28.2 bits (14), Expect = 7.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 25 tcacgctgctgccg 38
||||||||||||||
Sbjct: 563 tcacgctgctgccg 576
>IS1131
Length = 2773
Score = 28.2 bits (14), Expect = 7.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 142 ggtcgatcatttca 155
||||||||||||||
Sbjct: 2696 ggtcgatcatttca 2683
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_72_length_372_cov_0.877966_ID_5316
(372 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISXau2 | IS3 | IS51 | Xanthobacter autotrophicus | 36 | 0.030 |
| ISXo2 | IS1595 | IS1595 | Xanthomomas oryzae | 34 | 0.12 |
| ISAzs33 | IS3 | IS150 | Azospirillum sp. | 30 | 1.9 |
| ISPfr8 | ISL3 | Propionibacterium freudenreichii | 30 | 1.9 | |
| ISBps2 | IS3 | IS3 | Burkholderia pseudomallei | 30 | 1.9 |
| ISAzo23 | IS5 | IS1031 | Azoarcus sp. | 30 | 1.9 |
| ISCARN22 | IS66 | Metagenomic data from CARNOULES | 30 | 1.9 | |
| ISAli5 | IS3 | IS150 | Azospirillum lipoferum | 30 | 1.9 |
| ISSusp1 | IS3 | IS51 | Sulfitobacter sp. | 30 | 1.9 |
| ISOgr1 | IS3 | IS51 | Oceanicola granulosus | 30 | 1.9 |
| IS1595 | IS1595 | IS1595 | Xanthomonas campestris | 30 | 1.9 |
| ISXac3 | IS3 | IS51 | Xanthomonas axonopodis | 30 | 1.9 |
| ISRtr1 | IS256 | - | Rhizobium tropici | 30 | 1.9 |
| IS4811 | IS5 | IS1031 | Streptomyces lividans | 30 | 1.9 |
| ISHwa33 | IS200/IS605 | IS1341 | Haloquadratum walsbyi | 28 | 7.4 |
| ISAs28 | IS21 | Aeromonas salmonicida | 28 | 7.4 | |
| ISAcif1 | ISNCY | ISMae2 | Acidithiobacillus ferrivorans | 28 | 7.4 |
| ISRso21 | ISL3 | Ralstonia solanacearum | 28 | 7.4 | |
| ISAzs22 | ISAs1 | Azospirillum sp. | 28 | 7.4 | |
| ISAzs18 | IS66 | Azospirillum sp. | 28 | 7.4 | |
| ISSysp5 | IS5 | Synechococcus sp. | 28 | 7.4 | |
| ISMch5 | IS3 | IS51 | Methylobacterium chloromethanicum | 28 | 7.4 |
| ISMav7 | IS1380 | Mycobacterium avium | 28 | 7.4 | |
| ISPlpa1 | IS1380 | Plesiocystis pacifica | 28 | 7.4 | |
| ISMdi12 | IS110 | IS1111 | Methylobacterium dichloromethanicum | 28 | 7.4 |
| ISMsi2 | IS3 | IS407 | Methylocella silvestris | 28 | 7.4 |
| ISStma14 | IS3 | IS3 | Stenotrophomonas maltophilia | 28 | 7.4 |
| ISCARN65 | IS21 | Metagenomic data from CARNOULES | 28 | 7.4 | |
| ISGdi3 | IS5 | IS1031 | Gluconacetobacter diazotrophicus | 28 | 7.4 |
| ISThsp1 | IS1182 | Thiomonas sp. | 28 | 7.4 | |
| ISPst3 | IS21 | Pseudomonas stutzeri | 28 | 7.4 | |
| ISDha7 | IS3 | IS3 | Desulfitobacterium hafniense | 28 | 7.4 |
| ISXc8 | IS3 | IS3 | Xanthomonas campestris | 28 | 7.4 |
| ISMlo4 | IS3 | IS51 | Mesorhizobium loti | 28 | 7.4 |
| ISAtu4 | IS3 | IS51 | Agrobacterium tumefaciens | 28 | 7.4 |
| ISBlo2 | IS21 | Bifidobacterium longum | 28 | 7.4 | |
| ISPpu10 | IS110 | Pseudomonas putida | 28 | 7.4 | |
| ISNg1 | IS3 | IS150 | Neisseria gonorrhoeae | 28 | 7.4 |
| IS469 | ISL3 | - | Streptomyces coelicolor | 28 | 7.4 |
| IS1602 | IS607 | Mycobacterium tuberculosis | 28 | 7.4 | |
| IS1537 | IS607 | Mycobacterium tuberculosis | 28 | 7.4 | |
| IS1535 | IS607 | Mycobacterium tuberculosis | 28 | 7.4 |
>ISXau2
Length = 1238
Score = 36.2 bits (18), Expect = 0.030
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 300 gcgctcgatgtagtcgaa 317
||||||||||||||||||
Sbjct: 1127 gcgctcgatgtagtcgaa 1110
>ISXo2
Length = 1070
Score = 34.2 bits (17), Expect = 0.12
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 158 ggcgcgcgatccagtcc 174
|||||||||||||||||
Sbjct: 699 ggcgcgcgatccagtcc 683
>ISAzs33
Length = 1265
Score = 30.2 bits (15), Expect = 1.9
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 46 tgatcggccagttgg 60
|||||||||||||||
Sbjct: 296 tgatcggccagttgg 310
>ISPfr8
Length = 1436
Score = 30.2 bits (15), Expect = 1.9
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 175 gggtcttgctggctg 189
|||||||||||||||
Sbjct: 781 gggtcttgctggctg 767
>ISBps2
Length = 1233
Score = 30.2 bits (15), Expect = 1.9
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 102 caccagccgggcctg 116
|||||||||||||||
Sbjct: 625 caccagccgggcctg 611
>ISAzo23
Length = 871
Score = 30.2 bits (15), Expect = 1.9
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 150 gtcgccatggcgcgc 164
|||||||||||||||
Sbjct: 214 gtcgccatggcgcgc 200
>ISCARN22
Length = 2674
Score = 30.2 bits (15), Expect = 1.9
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 76 ccctcgccgcgcgcc 90
|||||||||||||||
Sbjct: 2400 ccctcgccgcgcgcc 2414
>ISAli5
Length = 1266
Score = 30.2 bits (15), Expect = 1.9
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 46 tgatcggccagttgg 60
|||||||||||||||
Sbjct: 296 tgatcggccagttgg 310
>ISSusp1
Length = 1228
Score = 30.2 bits (15), Expect = 1.9
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 304 tcgatgtagtcgaag 318
|||||||||||||||
Sbjct: 1110 tcgatgtagtcgaag 1096
>ISOgr1
Length = 1255
Score = 30.2 bits (15), Expect = 1.9
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 303 ctcgatgtagtcgaa 317
|||||||||||||||
Sbjct: 1141 ctcgatgtagtcgaa 1127
>IS1595
Length = 1072
Score = 30.2 bits (15), Expect = 1.9
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 203 gcagcggcagtttgctgcc 221
|||||||||||||| ||||
Sbjct: 347 gcagcggcagtttggtgcc 329
>ISXac3
Length = 1234
Score = 30.2 bits (15), Expect = 1.9
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 303 ctcgatgtagtcgaa 317
|||||||||||||||
Sbjct: 1118 ctcgatgtagtcgaa 1104
>ISRtr1
Length = 1364
Score = 30.2 bits (15), Expect = 1.9
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 275 cgaacaccggcgcgg 289
|||||||||||||||
Sbjct: 212 cgaacaccggcgcgg 226
>IS4811
Length = 5396
Score = 30.2 bits (15), Expect = 1.9
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 112 gcctgcaccgcgatc 126
|||||||||||||||
Sbjct: 4985 gcctgcaccgcgatc 4999
>ISHwa33
Length = 1396
Score = 28.2 bits (14), Expect = 7.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 299 tgcgctcgatgtag 312
||||||||||||||
Sbjct: 163 tgcgctcgatgtag 176
>ISAs28
Length = 2626
Score = 28.2 bits (14), Expect = 7.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 326 gaaagcgcgcgcca 339
||||||||||||||
Sbjct: 411 gaaagcgcgcgcca 398
>ISAcif1
Length = 2464
Score = 28.2 bits (14), Expect = 7.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 210 cagtttgctgcccg 223
||||||||||||||
Sbjct: 2266 cagtttgctgcccg 2253
>ISRso21
Length = 2032
Score = 28.2 bits (14), Expect = 7.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 302 gctcgatgtagtcg 315
||||||||||||||
Sbjct: 1005 gctcgatgtagtcg 992
>ISAzs22
Length = 1267
Score = 28.2 bits (14), Expect = 7.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 46 tgatcggccagttg 59
||||||||||||||
Sbjct: 509 tgatcggccagttg 522
>ISAzs18
Length = 2633
Score = 28.2 bits (14), Expect = 7.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 42 cggctgatcggcca 55
||||||||||||||
Sbjct: 777 cggctgatcggcca 764
>ISSysp5
Length = 1398
Score = 28.2 bits (14), Expect = 7.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 45 ctgatcggccagtt 58
||||||||||||||
Sbjct: 164 ctgatcggccagtt 151
>ISMch5
Length = 1240
Score = 28.2 bits (14), Expect = 7.4
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 300 gcgctcgatgtagtcgaa 317
|||||||||||| |||||
Sbjct: 1129 gcgctcgatgtaatcgaa 1112
>ISMav7
Length = 1691
Score = 28.2 bits (14), Expect = 7.4
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 49 tcggccagttgggcgggg 66
||||||||||| ||||||
Sbjct: 354 tcggccagttgtgcgggg 371
>ISPlpa1
Length = 1849
Score = 28.2 bits (14), Expect = 7.4
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 39 agacggctgatcggccag 56
||||| ||||||||||||
Sbjct: 967 agacgcctgatcggccag 984
>ISMdi12
Length = 1371
Score = 28.2 bits (14), Expect = 7.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 237 catgtccatgccgc 250
||||||||||||||
Sbjct: 1282 catgtccatgccgc 1269
>ISMsi2
Length = 1332
Score = 28.2 bits (14), Expect = 7.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 81 gccgcgcgcccgcc 94
||||||||||||||
Sbjct: 1248 gccgcgcgcccgcc 1261
>ISStma14
Length = 1231
Score = 28.2 bits (14), Expect = 7.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 301 cgctcgatgtagtc 314
||||||||||||||
Sbjct: 1136 cgctcgatgtagtc 1123
>ISCARN65
Length = 2433
Score = 28.2 bits (14), Expect = 7.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 159 gcgcgcgatccagt 172
||||||||||||||
Sbjct: 1617 gcgcgcgatccagt 1604
>ISGdi3
Length = 912
Score = 28.2 bits (14), Expect = 7.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 282 cggcgcggtctccc 295
||||||||||||||
Sbjct: 208 cggcgcggtctccc 195
>ISThsp1
Length = 1539
Score = 28.2 bits (14), Expect = 7.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 183 ctggctgccgccgg 196
||||||||||||||
Sbjct: 128 ctggctgccgccgg 141
>ISPst3
Length = 2606
Score = 28.2 bits (14), Expect = 7.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 115 tgcaccgcgatctg 128
||||||||||||||
Sbjct: 1801 tgcaccgcgatctg 1814
>ISDha7
Length = 1499
Score = 28.2 bits (14), Expect = 7.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 357 ggcgagggcggggt 370
||||||||||||||
Sbjct: 1365 ggcgagggcggggt 1378
>ISXc8
Length = 1227
Score = 28.2 bits (14), Expect = 7.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 301 cgctcgatgtagtc 314
||||||||||||||
Sbjct: 1132 cgctcgatgtagtc 1119
>ISMlo4
Length = 1239
Score = 28.2 bits (14), Expect = 7.4
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 300 gcgctcgatgtagtcgaa 317
|||||||||||| |||||
Sbjct: 1128 gcgctcgatgtaatcgaa 1111
>ISAtu4
Length = 1241
Score = 28.2 bits (14), Expect = 7.4
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 300 gcgctcgatgtagtcgaa 317
|||||||||||| |||||
Sbjct: 1130 gcgctcgatgtaatcgaa 1113
>ISBlo2
Length = 2455
Score = 28.2 bits (14), Expect = 7.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 278 acaccggcgcggtc 291
||||||||||||||
Sbjct: 1496 acaccggcgcggtc 1483
>ISPpu10
Length = 1314
Score = 28.2 bits (14), Expect = 7.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 100 gccaccagccgggc 113
||||||||||||||
Sbjct: 563 gccaccagccgggc 576
>ISNg1
Length = 1447
Score = 28.2 bits (14), Expect = 7.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 35 catcagacggctga 48
||||||||||||||
Sbjct: 816 catcagacggctga 803
>IS469
Length = 1647
Score = 28.2 bits (14), Expect = 7.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 351 gggcagggcgaggg 364
||||||||||||||
Sbjct: 196 gggcagggcgaggg 183
>IS1602
Length = 2053
Score = 28.2 bits (14), Expect = 7.4
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 97 acggccaccagccgggcc 114
||||||||||||| ||||
Sbjct: 1960 acggccaccagcccggcc 1943
>IS1537
Length = 1921
Score = 28.2 bits (14), Expect = 7.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 100 gccaccagccgggc 113
||||||||||||||
Sbjct: 1823 gccaccagccgggc 1810
>IS1535
Length = 2300
Score = 28.2 bits (14), Expect = 7.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 21 cgcggcgaggccaa 34
||||||||||||||
Sbjct: 2233 cgcggcgaggccaa 2246
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_73_length_371_cov_0.989796_ID_5318
(371 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISNoc2 | IS5 | IS5 | Nitrosococcus oceani | 34 | 0.12 |
| ISStma2 | IS3 | IS150 | Stenotrophomonas maltophilia | 34 | 0.12 |
| ISStma10 | IS630 | Stenotrophomonas maltophilia | 32 | 0.47 | |
| ISDds2 | IS4 | IS10 | Deinococcus deserti | 32 | 0.47 |
| ISH26-1 | IS4 | ISH8 | Halobacterium salinarum | 32 | 0.47 |
| ISH26 | IS4 | ISH8 | Halobacterium salinarum | 32 | 0.47 |
| IS900 | IS110 | - | Mycobacterium paratuberculosis | 32 | 0.47 |
| IS1471 | IS630 | - | Burkholderia cepacia | 32 | 0.47 |
| ISPa62 | IS110 | IS1111 | Pseudomonas aeruginosa | 30 | 1.9 |
| ISMno25 | IS110 | IS1111 | Methylobacterium nodulans | 30 | 1.9 |
| TnShfr1 | Tn3 | Shewanella frigidimarina | 30 | 1.9 | |
| ISMgi5 | IS256 | Mycobacterium gilvum | 30 | 1.9 | |
| ISAzs34 | ISNCY | IS892 | Azospirillum sp. | 30 | 1.9 |
| ISAzs30 | IS21 | Azospirillum sp. | 30 | 1.9 | |
| ISXac4 | IS3 | IS407 | Xanthomonas axonopodis | 30 | 1.9 |
| ISMex38 | Tn3 | Methylobacterium extorquens | 30 | 1.9 | |
| ISThsp12 | IS1634 | Thiomonas sp. | 30 | 1.9 | |
| ISThsp6 | IS5 | IS427 | Thiomonas sp. | 30 | 1.9 |
| ISBj7_B | IS66 | Bradyrhizobium japonicum | 30 | 1.9 | |
| ISBfun4 | IS701 | Burkholderia xenovorans | 30 | 1.9 | |
| ISUnCu1 | IS110 | IS1111 | Uncultured bacterium | 30 | 1.9 |
| ISPpu9 | IS110 | Pseudomonas putida | 30 | 1.9 | |
| ISAeca3 | IS110 | IS1111 | Aeromonas caviae | 28 | 7.4 |
| ISHel2 | IS200/IS605 | IS605 | Haloferax elongans | 28 | 7.4 |
| ISNpe14 | IS5 | ISH1 | Natrinema pellirubrum | 28 | 7.4 |
| ISPa43 | Tn3 | Pseudomonas aeruginosa | 28 | 7.4 | |
| ISPa30 | IS66 | Pseudomonas aeruginosa | 28 | 7.4 | |
| ISVsp1 | IS1634 | Verrucomicrobium spinosum | 28 | 7.4 | |
| ISMpo10 | Tn3 | Methylobacterium populi | 28 | 7.4 | |
| ISBf11 | IS1380 | IS942 | Bacteroides fragilis | 28 | 7.4 |
| ISRer1 | IS1380 | Rhodococcus erythropolis | 28 | 7.4 | |
| ISMex17 | IS110 | Methylobacterium extorquens | 28 | 7.4 | |
| ISAnsp8 | IS3 | IS407 | Anaeromyxobacter sp. | 28 | 7.4 |
| ISAnsp5 | IS21 | Anaeromyxobacter sp. | 28 | 7.4 | |
| ISAzo19 | IS66 | Azoarcus sp. | 28 | 7.4 | |
| ISThsp2 | IS21 | Thiomonas sp. | 28 | 7.4 | |
| ISNisp6 | IS66 | Nitrobacter sp. | 28 | 7.4 | |
| ISXau4 | IS66 | Xanthobacter autotrophicus | 28 | 7.4 | |
| ISAli6 | IS256 | Azospirillum lipoferum | 28 | 7.4 | |
| ISAli1 | IS5 | IS1031 | Azospirillum lipoferum | 28 | 7.4 |
| ISAma4 | IS66 | ISBst12 | Alteromonas macleodii | 28 | 7.4 |
| ISAzca1 | IS1595 | ISNha5 | Azorhizobium caulinodans | 28 | 7.4 |
| ISSpu5 | IS21 | Shewanella putrefaciens | 28 | 7.4 | |
| ISMsm6 | IS1634 | Mycobacterium smegmatis | 28 | 7.4 | |
| ISRsp6 | IS4 | IS4Sa | Rhizobium sp. | 28 | 7.4 |
| ISRm16 | IS4 | IS4Sa | Sinorhizobium meliloti | 28 | 7.4 |
| ISSpo3 | IS1595 | ISNwi1 | Silicibacter pomeroyi | 28 | 7.4 |
| ISRm1 | IS3 | IS2 | Rhizobium meliloti | 28 | 7.4 |
| IS1SD | IS1 | - | Shigella dysenteriae | 28 | 7.4 |
| IS1S | IS1 | - | Shigella sonnei | 28 | 7.4 |
| IS1R | IS1 | - | Escherichia coli | 28 | 7.4 |
| IS1G | IS1 | - | Escherichia coli | 28 | 7.4 |
| IS1D | IS1 | - | Escherichia coli | 28 | 7.4 |
| IS1B | IS1 | - | Escherichia coli | 28 | 7.4 |
| IS1A | IS1 | - | Escherichia coli | 28 | 7.4 |
| IS1676 | IS1380 | - | Rhodococcus erythropolis | 28 | 7.4 |
| IS1408 | IS256 | - | Mycobacterium branderi | 28 | 7.4 |
| IS1404 | IS3 | IS407 | Xanthomonas campestris | 28 | 7.4 |
| IS1403 | IS3 | IS407 | Xanthomonas campestris | 28 | 7.4 |
| IS1295 | IS256 | - | Rhodococcus sp. | 28 | 7.4 |
| IS1021 | IS5 | IS5 | Ralstonia solanacearum | 28 | 7.4 |
>ISNoc2
Length = 1472
Score = 34.2 bits (17), Expect = 0.12
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 206 gaacaggtggtgcagcgctgg 226
|||||||||||||| ||||||
Sbjct: 349 gaacaggtggtgcaacgctgg 369
>ISStma2
Length = 1428
Score = 34.2 bits (17), Expect = 0.12
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 132 acatccagtactacaac 148
|||||||||||||||||
Sbjct: 1309 acatccagtactacaac 1325
>ISStma10
Length = 1106
Score = 32.2 bits (16), Expect = 0.47
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 292 caaggcctgcatgaac 307
||||||||||||||||
Sbjct: 775 caaggcctgcatgaac 760
>ISDds2
Length = 1069
Score = 32.2 bits (16), Expect = 0.47
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 189 aacaggtgcgcgaagc 204
||||||||||||||||
Sbjct: 494 aacaggtgcgcgaagc 479
>ISH26-1
Length = 1705
Score = 32.2 bits (16), Expect = 0.47
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 195 tgcgcgaagccgaaca 210
||||||||||||||||
Sbjct: 1141 tgcgcgaagccgaaca 1156
Score = 32.2 bits (16), Expect = 0.47
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 195 tgcgcgaagccgaaca 210
||||||||||||||||
Sbjct: 1460 tgcgcgaagccgaaca 1475
>ISH26
Length = 1384
Score = 32.2 bits (16), Expect = 0.47
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 195 tgcgcgaagccgaaca 210
||||||||||||||||
Sbjct: 244 tgcgcgaagccgaaca 229
>IS900
Length = 1451
Score = 32.2 bits (16), Expect = 0.47
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 74 accgacgcgatgatcg 89
||||||||||||||||
Sbjct: 998 accgacgcgatgatcg 1013
>IS1471
Length = 1113
Score = 32.2 bits (16), Expect = 0.47
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 308 ggctggggcgccatcc 323
||||||||||||||||
Sbjct: 220 ggctggggcgccatcc 235
>ISPa62
Length = 1382
Score = 30.2 bits (15), Expect = 1.9
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 209 caggtggtgcagcgc 223
|||||||||||||||
Sbjct: 139 caggtggtgcagcgc 153
>ISMno25
Length = 1518
Score = 30.2 bits (15), Expect = 1.9
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 152 gccctggtgaaccgc 166
|||||||||||||||
Sbjct: 575 gccctggtgaaccgc 589
>TnShfr1
Length = 5131
Score = 30.2 bits (15), Expect = 1.9
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 85 gatcgcctgggccgc 99
|||||||||||||||
Sbjct: 1432 gatcgcctgggccgc 1418
>ISMgi5
Length = 1470
Score = 30.2 bits (15), Expect = 1.9
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 234 agttgggcaagaaga 248
|||||||||||||||
Sbjct: 1028 agttgggcaagaaga 1042
Score = 28.2 bits (14), Expect = 7.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 76 cgacgcgatgatcg 89
||||||||||||||
Sbjct: 624 cgacgcgatgatcg 637
>ISAzs34
Length = 1650
Score = 30.2 bits (15), Expect = 1.9
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 89 gcctgggccgccgag 103
|||||||||||||||
Sbjct: 627 gcctgggccgccgag 613
>ISAzs30
Length = 2365
Score = 30.2 bits (15), Expect = 1.9
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 5 cgccgcatcaaggcg 19
|||||||||||||||
Sbjct: 1618 cgccgcatcaaggcg 1632
>ISXac4
Length = 1202
Score = 30.2 bits (15), Expect = 1.9
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 192 aggtgcgcgaagccg 206
|||||||||||||||
Sbjct: 1053 aggtgcgcgaagccg 1067
>ISMex38
Length = 3841
Score = 30.2 bits (15), Expect = 1.9
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 68 ggcatgaccgacgcg 82
|||||||||||||||
Sbjct: 1366 ggcatgaccgacgcg 1380
>ISThsp12
Length = 2004
Score = 30.2 bits (15), Expect = 1.9
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 210 aggtggtgcagcgct 224
|||||||||||||||
Sbjct: 1570 aggtggtgcagcgct 1584
>ISThsp6
Length = 843
Score = 30.2 bits (15), Expect = 1.9
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 221 cgctggcgcgacaag 235
|||||||||||||||
Sbjct: 283 cgctggcgcgacaag 297
>ISBj7_B
Length = 2865
Score = 30.2 bits (15), Expect = 1.9
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 167 gacgaactcatgccc 181
|||||||||||||||
Sbjct: 2468 gacgaactcatgccc 2482
>ISBfun4
Length = 1464
Score = 30.2 bits (15), Expect = 1.9
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 185 ctcgaacaggtgcgc 199
|||||||||||||||
Sbjct: 292 ctcgaacaggtgcgc 306
>ISUnCu1
Length = 1381
Score = 30.2 bits (15), Expect = 1.9
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 209 caggtggtgcagcgc 223
|||||||||||||||
Sbjct: 138 caggtggtgcagcgc 152
>ISPpu9
Length = 2043
Score = 30.2 bits (15), Expect = 1.9
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 4 ccgccgcatcaaggc 18
|||||||||||||||
Sbjct: 925 ccgccgcatcaaggc 939
>ISAeca3
Length = 1340
Score = 28.2 bits (14), Expect = 7.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 67 cggcatgaccgacg 80
||||||||||||||
Sbjct: 539 cggcatgaccgacg 526
>ISHel2
Length = 1975
Score = 28.2 bits (14), Expect = 7.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 322 ccacctgaccatcg 335
||||||||||||||
Sbjct: 1918 ccacctgaccatcg 1905
>ISNpe14
Length = 1131
Score = 28.2 bits (14), Expect = 7.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 220 gcgctggcgcgaca 233
||||||||||||||
Sbjct: 679 gcgctggcgcgaca 692
>ISPa43
Length = 19903
Score = 28.2 bits (14), Expect = 7.4
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 339 ccgacggcgtggccatgc 356
|||| |||||||||||||
Sbjct: 11931 ccgaaggcgtggccatgc 11948
>ISPa30
Length = 2436
Score = 28.2 bits (14), Expect = 7.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 324 acctgaccatcgcc 337
||||||||||||||
Sbjct: 1060 acctgaccatcgcc 1047
>ISVsp1
Length = 2082
Score = 28.2 bits (14), Expect = 7.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 219 agcgctggcgcgac 232
||||||||||||||
Sbjct: 755 agcgctggcgcgac 768
>ISMpo10
Length = 4911
Score = 28.2 bits (14), Expect = 7.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 97 cgccgagttgggca 110
||||||||||||||
Sbjct: 2902 cgccgagttgggca 2889
>ISBf11
Length = 1594
Score = 28.2 bits (14), Expect = 7.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 6 gccgcatcaaggcg 19
||||||||||||||
Sbjct: 1290 gccgcatcaaggcg 1303
>ISRer1
Length = 1687
Score = 28.2 bits (14), Expect = 7.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 88 cgcctgggccgccg 101
||||||||||||||
Sbjct: 499 cgcctgggccgccg 512
>ISMex17
Length = 1132
Score = 28.2 bits (14), Expect = 7.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 187 cgaacaggtgcgcg 200
||||||||||||||
Sbjct: 931 cgaacaggtgcgcg 918
>ISAnsp8
Length = 1225
Score = 28.2 bits (14), Expect = 7.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 120 tcgagttcgccaac 133
||||||||||||||
Sbjct: 1136 tcgagttcgccaac 1149
>ISAnsp5
Length = 2192
Score = 28.2 bits (14), Expect = 7.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 158 gtgaaccgcgacga 171
||||||||||||||
Sbjct: 1190 gtgaaccgcgacga 1177
>ISAzo19
Length = 2423
Score = 28.2 bits (14), Expect = 7.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 6 gccgcatcaaggcg 19
||||||||||||||
Sbjct: 1542 gccgcatcaaggcg 1555
>ISThsp2
Length = 2644
Score = 28.2 bits (14), Expect = 7.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 7 ccgcatcaaggcgc 20
||||||||||||||
Sbjct: 2369 ccgcatcaaggcgc 2382
>ISNisp6
Length = 2489
Score = 28.2 bits (14), Expect = 7.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 78 acgcgatgatcgcc 91
||||||||||||||
Sbjct: 1729 acgcgatgatcgcc 1742
>ISXau4
Length = 2458
Score = 28.2 bits (14), Expect = 7.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 299 tgcatgaacggctg 312
||||||||||||||
Sbjct: 1577 tgcatgaacggctg 1590
>ISAli6
Length = 1437
Score = 28.2 bits (14), Expect = 7.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 59 cagaacatcggcat 72
||||||||||||||
Sbjct: 229 cagaacatcggcat 216
>ISAli1
Length = 933
Score = 28.2 bits (14), Expect = 7.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 309 gctggggcgccatc 322
||||||||||||||
Sbjct: 593 gctggggcgccatc 580
>ISAma4
Length = 1529
Score = 28.2 bits (14), Expect = 7.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 150 gggccctggtgaac 163
||||||||||||||
Sbjct: 20 gggccctggtgaac 7
>ISAzca1
Length = 4520
Score = 28.2 bits (14), Expect = 7.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 314 ggcgccatccacct 327
||||||||||||||
Sbjct: 1766 ggcgccatccacct 1753
>ISSpu5
Length = 2556
Score = 28.2 bits (14), Expect = 7.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 43 catgccggtcttcc 56
||||||||||||||
Sbjct: 2286 catgccggtcttcc 2273
>ISMsm6
Length = 1765
Score = 28.2 bits (14), Expect = 7.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 322 ccacctgaccatcg 335
||||||||||||||
Sbjct: 1538 ccacctgaccatcg 1551
>ISRsp6
Length = 1277
Score = 28.2 bits (14), Expect = 7.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 79 cgcgatgatcgcct 92
||||||||||||||
Sbjct: 1057 cgcgatgatcgcct 1070
>ISRm16
Length = 1299
Score = 28.2 bits (14), Expect = 7.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 79 cgcgatgatcgcct 92
||||||||||||||
Sbjct: 1078 cgcgatgatcgcct 1091
>ISSpo3
Length = 1947
Score = 28.2 bits (14), Expect = 7.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 196 gcgcgaagccgaac 209
||||||||||||||
Sbjct: 1749 gcgcgaagccgaac 1736
>ISRm1
Length = 1319
Score = 28.2 bits (14), Expect = 7.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 235 gttgggcaagaaga 248
||||||||||||||
Sbjct: 349 gttgggcaagaaga 362
>IS1SD
Length = 768
Score = 28.2 bits (14), Expect = 7.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 218 cagcgctggcgcga 231
||||||||||||||
Sbjct: 422 cagcgctggcgcga 409
>IS1S
Length = 768
Score = 28.2 bits (14), Expect = 7.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 218 cagcgctggcgcga 231
||||||||||||||
Sbjct: 422 cagcgctggcgcga 409
>IS1R
Length = 768
Score = 28.2 bits (14), Expect = 7.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 218 cagcgctggcgcga 231
||||||||||||||
Sbjct: 422 cagcgctggcgcga 409
>IS1G
Length = 768
Score = 28.2 bits (14), Expect = 7.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 218 cagcgctggcgcga 231
||||||||||||||
Sbjct: 422 cagcgctggcgcga 409
>IS1D
Length = 768
Score = 28.2 bits (14), Expect = 7.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 218 cagcgctggcgcga 231
||||||||||||||
Sbjct: 422 cagcgctggcgcga 409
>IS1B
Length = 768
Score = 28.2 bits (14), Expect = 7.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 218 cagcgctggcgcga 231
||||||||||||||
Sbjct: 422 cagcgctggcgcga 409
>IS1A
Length = 768
Score = 28.2 bits (14), Expect = 7.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 218 cagcgctggcgcga 231
||||||||||||||
Sbjct: 422 cagcgctggcgcga 409
>IS1676
Length = 1693
Score = 28.2 bits (14), Expect = 7.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 72 tgaccgacgcgatg 85
||||||||||||||
Sbjct: 907 tgaccgacgcgatg 920
>IS1408
Length = 1325
Score = 28.2 bits (14), Expect = 7.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 94 ggccgccgagttgg 107
||||||||||||||
Sbjct: 473 ggccgccgagttgg 486
>IS1404
Length = 1203
Score = 28.2 bits (14), Expect = 7.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 195 tgcgcgaagccgaa 208
||||||||||||||
Sbjct: 109 tgcgcgaagccgaa 122
>IS1403
Length = 1203
Score = 28.2 bits (14), Expect = 7.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 195 tgcgcgaagccgaa 208
||||||||||||||
Sbjct: 109 tgcgcgaagccgaa 122
>IS1295
Length = 1456
Score = 28.2 bits (14), Expect = 7.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 219 agcgctggcgcgac 232
||||||||||||||
Sbjct: 1228 agcgctggcgcgac 1241
>IS1021
Length = 1209
Score = 28.2 bits (14), Expect = 7.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 358 ctgccaggaagcgc 371
||||||||||||||
Sbjct: 166 ctgccaggaagcgc 153
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_74_length_370_cov_0.740614_ID_5320
(370 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISArsp6 | Tn3 | Arthrobacter sp. | 36 | 0.030 | |
| ISSis7 | IS607 | Sulfolobus islandicus | 34 | 0.12 | |
| IS1921 | IS607 | - | Acidianus ambivalens | 34 | 0.12 |
| ISHut3 | IS200/IS605 | IS1341 | Halorhabdus utahensis | 30 | 1.9 |
| ISAs20 | IS3 | IS3 | Aeromonas salmonicida | 30 | 1.9 |
| ISCARN58 | IS21 | Metagenomic data from CARNOULES | 30 | 1.9 | |
| ISAzvi10 | IS701 | Azotobacter vinelandii | 30 | 1.9 | |
| IS1602 | IS607 | Mycobacterium tuberculosis | 30 | 1.9 | |
| ISAs32 | IS3 | IS51 | Aeromonas salmonicida | 28 | 7.4 |
| ISNma12 | IS200/IS605 | IS605 | Natrialba magadii | 28 | 7.4 |
| ISAs7 | IS3 | IS51 | Aeromonas salmonicida | 28 | 7.4 |
| ISHvo13 | IS4 | ISH8 | Haloferax volcanii | 28 | 7.4 |
| ISHvo12 | IS4 | ISH8 | Haloferax volcanii | 28 | 7.4 |
| ISPve1 | IS21 | Paracoccus versutus | 28 | 7.4 | |
| ISNph6 | IS200/IS605 | Natronomonas pharaonis | 28 | 7.4 | |
| ISBspe1 | IS1182 | Bacillus pseudofirmus | 28 | 7.4 | |
| ISGpr5 | IS5 | IS5 | Gamma proteobacterium | 28 | 7.4 |
| ISMaq4 | IS1380 | Marinobacter aquaeolei | 28 | 7.4 | |
| ISVsa11 | IS3 | IS3 | Aliivibrio salmonicida | 28 | 7.4 |
| ISCARN40 | IS256 | Metagenomic data from CARNOULES | 28 | 7.4 | |
| ISBeg1 | IS1 | ISMhu11 | Beggiatoa sp. | 28 | 7.4 |
| ISVei1 | IS3 | IS3 | Verminephrobacter eiseniae | 28 | 7.4 |
| ISAs5 | IS3 | IS51 | Aeromonas salmonicida | 28 | 7.4 |
| ISPlu10 | IS630 | Photorhabdus luminescens | 28 | 7.4 | |
| ISBcen1 | IS110 | IS1111 | Burkholderia cenocepacia | 28 | 7.4 |
| ISRle1 | IS110 | IS1111 | Rhizobium leguminosarum | 28 | 7.4 |
| ISH8E | IS4 | ISH8 | Halobacterium sp. | 28 | 7.4 |
| IS4351 | IS30 | - | Bacteroides fragilis | 28 | 7.4 |
| IS2 | IS3 | IS2 | Escherichia coli | 28 | 7.4 |
| IS1533 | IS110 | - | Leptospira borgpetersenii | 28 | 7.4 |
>ISArsp6
Length = 26712
Score = 36.2 bits (18), Expect = 0.030
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 184 atggccgtttcgatggcg 201
||||||||||||||||||
Sbjct: 24776 atggccgtttcgatggcg 24759
>ISSis7
Length = 1929
Score = 34.2 bits (17), Expect = 0.12
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 74 ccgtgatattccgcggg 90
|||||||||||||||||
Sbjct: 1787 ccgtgatattccgcggg 1803
>IS1921
Length = 1923
Score = 34.2 bits (17), Expect = 0.12
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 74 ccgtgatattccgcggg 90
|||||||||||||||||
Sbjct: 134 ccgtgatattccgcggg 118
>ISHut3
Length = 1448
Score = 30.2 bits (15), Expect = 1.9
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 25 acggctttgccgtct 39
|||||||||||||||
Sbjct: 1352 acggctttgccgtct 1338
>ISAs20
Length = 1674
Score = 30.2 bits (15), Expect = 1.9
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 262 gaacgaaccgcatcc 276
|||||||||||||||
Sbjct: 746 gaacgaaccgcatcc 732
>ISCARN58
Length = 2436
Score = 30.2 bits (15), Expect = 1.9
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 43 gatccgccgatcgcc 57
|||||||||||||||
Sbjct: 326 gatccgccgatcgcc 340
>ISAzvi10
Length = 1431
Score = 30.2 bits (15), Expect = 1.9
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 185 tggccgtttcgatggcgct 203
|||||||||||| ||||||
Sbjct: 1101 tggccgtttcgaaggcgct 1083
>IS1602
Length = 2053
Score = 30.2 bits (15), Expect = 1.9
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 25 acggctttgccgtct 39
|||||||||||||||
Sbjct: 839 acggctttgccgtct 825
>ISAs32
Length = 1232
Score = 28.2 bits (14), Expect = 7.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 52 atcgcccccagttc 65
||||||||||||||
Sbjct: 4 atcgcccccagttc 17
>ISNma12
Length = 1923
Score = 28.2 bits (14), Expect = 7.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 25 acggctttgccgtc 38
||||||||||||||
Sbjct: 1226 acggctttgccgtc 1213
>ISAs7
Length = 1232
Score = 28.2 bits (14), Expect = 7.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 52 atcgcccccagttc 65
||||||||||||||
Sbjct: 4 atcgcccccagttc 17
>ISHvo13
Length = 1395
Score = 28.2 bits (14), Expect = 7.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 85 cgcgggcgcgccat 98
||||||||||||||
Sbjct: 768 cgcgggcgcgccat 781
>ISHvo12
Length = 1395
Score = 28.2 bits (14), Expect = 7.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 85 cgcgggcgcgccat 98
||||||||||||||
Sbjct: 768 cgcgggcgcgccat 781
>ISPve1
Length = 2503
Score = 28.2 bits (14), Expect = 7.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 48 gccgatcgccccca 61
||||||||||||||
Sbjct: 1458 gccgatcgccccca 1445
>ISNph6
Length = 1854
Score = 28.2 bits (14), Expect = 7.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 264 acgaaccgcatcca 277
||||||||||||||
Sbjct: 878 acgaaccgcatcca 891
>ISBspe1
Length = 1560
Score = 28.2 bits (14), Expect = 7.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 114 ggtattgccgatat 127
||||||||||||||
Sbjct: 1135 ggtattgccgatat 1122
>ISGpr5
Length = 1558
Score = 28.2 bits (14), Expect = 7.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 285 ccggtagccaagat 298
||||||||||||||
Sbjct: 1172 ccggtagccaagat 1159
>ISMaq4
Length = 1559
Score = 28.2 bits (14), Expect = 7.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 105 cacgatgcgggtat 118
||||||||||||||
Sbjct: 759 cacgatgcgggtat 746
>ISVsa11
Length = 1258
Score = 28.2 bits (14), Expect = 7.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 117 attgccgatattct 130
||||||||||||||
Sbjct: 564 attgccgatattct 577
>ISCARN40
Length = 1264
Score = 28.2 bits (14), Expect = 7.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 110 tgcgggtattgccg 123
||||||||||||||
Sbjct: 278 tgcgggtattgccg 265
>ISBeg1
Length = 1417
Score = 28.2 bits (14), Expect = 7.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 132 ttccaaatccagat 145
||||||||||||||
Sbjct: 1372 ttccaaatccagat 1385
>ISVei1
Length = 1214
Score = 28.2 bits (14), Expect = 7.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 48 gccgatcgccccca 61
||||||||||||||
Sbjct: 620 gccgatcgccccca 633
>ISAs5
Length = 1233
Score = 28.2 bits (14), Expect = 7.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 52 atcgcccccagttc 65
||||||||||||||
Sbjct: 4 atcgcccccagttc 17
>ISPlu10
Length = 1149
Score = 28.2 bits (14), Expect = 7.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 241 acgttttcactttc 254
||||||||||||||
Sbjct: 1076 acgttttcactttc 1063
>ISBcen1
Length = 1357
Score = 28.2 bits (14), Expect = 7.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 24 cacggctttgccgt 37
||||||||||||||
Sbjct: 155 cacggctttgccgt 142
>ISRle1
Length = 1409
Score = 28.2 bits (14), Expect = 7.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 262 gaacgaaccgcatc 275
||||||||||||||
Sbjct: 406 gaacgaaccgcatc 393
>ISH8E
Length = 1403
Score = 28.2 bits (14), Expect = 7.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 85 cgcgggcgcgccat 98
||||||||||||||
Sbjct: 770 cgcgggcgcgccat 783
>IS4351
Length = 1155
Score = 28.2 bits (14), Expect = 7.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 244 ttttcactttccgc 257
||||||||||||||
Sbjct: 322 ttttcactttccgc 335
>IS2
Length = 1331
Score = 28.2 bits (14), Expect = 7.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 188 ccgtttcgatggcg 201
||||||||||||||
Sbjct: 756 ccgtttcgatggcg 743
>IS1533
Length = 1460
Score = 28.2 bits (14), Expect = 7.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 246 ttcactttccgcta 259
||||||||||||||
Sbjct: 732 ttcactttccgcta 719
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_75_length_370_cov_0.996587_ID_5322
(370 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISBj7_B | IS66 | Bradyrhizobium japonicum | 34 | 0.12 | |
| TnXo19 | Tn3 | Xanthomonas oryzae | 32 | 0.47 | |
| ISTni1 | ISKra4 | ISKra4 | Thioalkalivibrio nitratireducens | 32 | 0.47 |
| ISAde4 | IS3 | IS407 | Anaeromyxobacter dehalogenans | 32 | 0.47 |
| ISMsm6 | IS1634 | Mycobacterium smegmatis | 32 | 0.47 | |
| ISStac1 | IS110 | IS1111 | Streptomyces aculeolatus | 32 | 0.47 |
| ISSgr1 | IS110 | IS1111 | Streptomyces griseus | 32 | 0.47 |
| ISXfu2 | IS5 | IS5 | Xanthomonas fuscans | 32 | 0.47 |
| IS110 | IS110 | - | Streptomyces coelicolor | 32 | 0.47 |
| IS1051 | IS5 | IS5 | Xanthomonas campestris | 32 | 0.47 |
| ISH32 | IS4 | ISH8 | Halobacterium salinarum | 30 | 1.9 |
| ISMysp7 | IS256 | Mycobacterium sp. | 30 | 1.9 | |
| ISNph18 | IS200/IS605 | IS1341 | Natronomonas pharaonis | 30 | 1.9 |
| ISShes11 | Tn3 | Shewanella sp. | 30 | 1.9 | |
| ISVsp4 | IS66 | Verrucomicrobium spinosum | 30 | 1.9 | |
| ISMpo9 | IS701 | Methylobacterium populi | 30 | 1.9 | |
| ISAar7 | IS21 | Arthrobacter arilaitensis | 30 | 1.9 | |
| ISAzo17 | IS21 | Azoarcus sp. | 30 | 1.9 | |
| ISCARN15 | IS66 | Metagenomic data from CARNOULES | 30 | 1.9 | |
| ISHch2 | IS4 | IS4 | Hahella chejuensis | 30 | 1.9 |
| ISAzo3 | ISAs1 | Azoarcus sp. | 30 | 1.9 | |
| ISBcen1 | IS110 | IS1111 | Burkholderia cenocepacia | 30 | 1.9 |
| ISPsp3 | IS5 | IS5 | Pseudomonas sp. | 30 | 1.9 |
| ISSna1 | ISNCY | ISDol1 | Streptomyces natalensis | 28 | 7.4 |
| TnAs3 | Tn3 | Aeromonas salmonicida | 28 | 7.4 | |
| ISAeme13 | IS4 | IS4 | Aeromonas media | 28 | 7.4 |
| ISMno24 | IS91 | Methylobacterium nodulans | 28 | 7.4 | |
| ISHsi2 | IS200/IS605 | IS605 | Haloarcula sinaiiensis | 28 | 7.4 |
| ISHru1 | IS200/IS605 | IS1341 | Halovivax ruber | 28 | 7.4 |
| ISAs30 | IS4 | IS4 | Aeromonas salmonicida | 28 | 7.4 |
| ISBte1 | ISKra4 | ISAzba1 | Burkholderia terrae | 28 | 7.4 |
| ISSusp4 | ISKra4 | ISAzba1 | Sulfitobacter sp. | 28 | 7.4 |
| ISHsa1 | ISH6 | Halococcus salifodinae | 28 | 7.4 | |
| ISEc37 | IS91 | Escherichia coli | 28 | 7.4 | |
| ISAzs8 | ISL3 | Azospirillum sp. | 28 | 7.4 | |
| ISRme6 | IS5 | IS427 | Ralstonia metallidurans | 28 | 7.4 |
| ISGau7 | IS21 | Gemmatimonas aurantiaca | 28 | 7.4 | |
| ISGau2 | IS3 | IS407 | Gemmatimonas aurantiaca | 28 | 7.4 |
| ISAcp2 | IS481 | Acidobacterium capsulatum | 28 | 7.4 | |
| ISPna3 | IS5 | IS5 | Polaromonas naphthalenivorans | 28 | 7.4 |
| ISUnCu2 | IS5 | IS5 | Uncultured bacterium | 28 | 7.4 |
| ISFsp12 | ISAzo13 | Frankia sp. | 28 | 7.4 | |
| ISRop2 | ISAzo13 | Rhodococcus opacus | 28 | 7.4 | |
| ISMpo10 | Tn3 | Methylobacterium populi | 28 | 7.4 | |
| ISMno23 | IS91 | Methylobacterium nodulans | 28 | 7.4 | |
| ISAar24 | IS3 | IS3 | Arthrobacter arilaitensis | 28 | 7.4 |
| ISRop1 | IS1380 | Rhodococcus opacus | 28 | 7.4 | |
| ISMsm12 | IS1380 | Mycobacterium smegmatis | 28 | 7.4 | |
| ISMyma7 | IS1380 | - | Mycobacterium marinum | 28 | 7.4 |
| ISMex38 | Tn3 | Methylobacterium extorquens | 28 | 7.4 | |
| ISAnsp4 | IS21 | Anaeromyxobacter sp. | 28 | 7.4 | |
| ISRce1 | ISAs1 | Rhodospirillum centenum | 28 | 7.4 | |
| ISCARN104 | IS66 | Metagenomic data from CARNOULES | 28 | 7.4 | |
| ISCARN76 | IS5 | IS5 | Metagenomic data from CARNOULES | 28 | 7.4 |
| ISBj5_B | IS5 | IS5 | Bradyrhizobium japonicum | 28 | 7.4 |
| ISStpr1 | IS481 | Streptomyces pristinaespiralis | 28 | 7.4 | |
| ISCARN23 | IS1634 | Metagenomic data from CARNOULES | 28 | 7.4 | |
| ISCARN1 | IS607 | Metagenomic data from CARNOULES | 28 | 7.4 | |
| ISMlu1 | IS256 | Micrococcus luteus | 28 | 7.4 | |
| ISGdi7 | IS110 | IS1111 | Gluconacetobacter diazotrophicus | 28 | 7.4 |
| ISAli17 | IS5 | IS903 | Azospirillum lipoferum | 28 | 7.4 |
| ISAli4 | IS3 | IS51 | Azospirillum lipoferum | 28 | 7.4 |
| ISMpo2 | IS1595 | ISNwi1 | Methylobacterium populi | 28 | 7.4 |
| ISDge5 | IS701 | Deinococcus geothermalis | 28 | 7.4 | |
| ISHne5 | IS110 | Hyphomonas neptunium | 28 | 7.4 | |
| ISTesp2 | ISL3 | Terrabacter sp. | 28 | 7.4 | |
| ISAzo9 | IS630 | Azoarcus sp. | 28 | 7.4 | |
| ISOgr3 | IS5 | IS903 | Oceanicola granulosus | 28 | 7.4 |
| ISPst8 | IS5 | IS427 | Pseudomonas stutzeri | 28 | 7.4 |
| ISPsy20 | IS21 | Pseudomonas syringae | 28 | 7.4 | |
| ISNmu3 | IS3 | IS2 | Nitrosospira multiformis | 28 | 7.4 |
| ISRpa1 | IS1595 | ISNwi1 | Rhodopseudomonas palustris | 28 | 7.4 |
| ISRso20 | IS3 | IS3 | Ralstonia solanacearum | 28 | 7.4 |
| ISFal3B | IS5 | IS1031 | Frankia alni | 28 | 7.4 |
| ISXo5 | IS1595 | IS1595 | Xanthomonas oryzae | 28 | 7.4 |
| IS1661 | IS3 | IS150 | Yersinia pestis | 28 | 7.4 |
| ISBlo7 | IS30 | Bifidobacterium longum | 28 | 7.4 | |
| ISBlo3 | IS3 | Bifidobacterium longum | 28 | 7.4 | |
| ISXc4 | Tn3 | - | Xanthomonas campestris | 28 | 7.4 |
| Tn3 | Tn3 | Salmonella wien | 28 | 7.4 | |
| ISRso14 | IS3 | IS407 | Ralstonia solanacearum | 28 | 7.4 |
| IS220 | IS1380 | - | Mycobacterium fortuitum | 28 | 7.4 |
>ISBj7_B
Length = 2865
Score = 34.2 bits (17), Expect = 0.12
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 148 ggcgtcggcggcggtgg 164
|||||||||||||||||
Sbjct: 148 ggcgtcggcggcggtgg 164
>TnXo19
Length = 18767
Score = 32.2 bits (16), Expect = 0.47
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 344 cgaaggccacctcggc 359
||||||||||||||||
Sbjct: 15818 cgaaggccacctcggc 15803
>ISTni1
Length = 2377
Score = 32.2 bits (16), Expect = 0.47
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 224 gccaactggccagcgg 239
||||||||||||||||
Sbjct: 1775 gccaactggccagcgg 1760
>ISAde4
Length = 1183
Score = 32.2 bits (16), Expect = 0.47
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 149 gcgtcggcggcggtgg 164
||||||||||||||||
Sbjct: 666 gcgtcggcggcggtgg 651
>ISMsm6
Length = 1765
Score = 32.2 bits (16), Expect = 0.47
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 171 cgttcatcgtgggctc 186
||||||||||||||||
Sbjct: 997 cgttcatcgtgggctc 1012
>ISStac1
Length = 1484
Score = 32.2 bits (16), Expect = 0.47
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 154 ggcggcggtggggaag 169
||||||||||||||||
Sbjct: 1179 ggcggcggtggggaag 1164
>ISSgr1
Length = 1544
Score = 32.2 bits (16), Expect = 0.47
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 154 ggcggcggtggggaag 169
||||||||||||||||
Sbjct: 1179 ggcggcggtggggaag 1164
>ISXfu2
Length = 1157
Score = 32.2 bits (16), Expect = 0.47
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 52 gcgcacatcggggtgg 67
||||||||||||||||
Sbjct: 594 gcgcacatcggggtgg 609
>IS110
Length = 1558
Score = 32.2 bits (16), Expect = 0.47
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 154 ggcggcggtggggaag 169
||||||||||||||||
Sbjct: 1179 ggcggcggtggggaag 1164
>IS1051
Length = 1158
Score = 32.2 bits (16), Expect = 0.47
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 52 gcgcacatcggggtgg 67
||||||||||||||||
Sbjct: 564 gcgcacatcggggtgg 549
>ISH32
Length = 1625
Score = 30.2 bits (15), Expect = 1.9
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 335 gcgccgcctcgaagg 349
|||||||||||||||
Sbjct: 1488 gcgccgcctcgaagg 1502
>ISMysp7
Length = 1397
Score = 30.2 bits (15), Expect = 1.9
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 316 tcgggcaggccggcc 330
|||||||||||||||
Sbjct: 849 tcgggcaggccggcc 835
>ISNph18
Length = 1458
Score = 30.2 bits (15), Expect = 1.9
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 199 actttctgcacgccc 213
|||||||||||||||
Sbjct: 931 actttctgcacgccc 945
>ISShes11
Length = 7669
Score = 30.2 bits (15), Expect = 1.9
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 351 cacctcggcctctgt 365
|||||||||||||||
Sbjct: 4044 cacctcggcctctgt 4030
>ISVsp4
Length = 2518
Score = 30.2 bits (15), Expect = 1.9
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 348 ggccacctcggcctc 362
|||||||||||||||
Sbjct: 1102 ggccacctcggcctc 1088
>ISMpo9
Length = 1413
Score = 30.2 bits (15), Expect = 1.9
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 275 gcaagaaggccagct 289
|||||||||||||||
Sbjct: 425 gcaagaaggccagct 439
>ISAar7
Length = 2983
Score = 30.2 bits (15), Expect = 1.9
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 203 tctgcacgcccatca 217
|||||||||||||||
Sbjct: 2576 tctgcacgcccatca 2562
>ISAzo17
Length = 2095
Score = 30.2 bits (15), Expect = 1.9
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 151 gtcggcggcggtggggaag 169
|||||||||||||| ||||
Sbjct: 1587 gtcggcggcggtggtgaag 1569
Score = 30.2 bits (15), Expect = 1.9
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 36 gaaacaccagcgcaa 50
|||||||||||||||
Sbjct: 1899 gaaacaccagcgcaa 1913
>ISCARN15
Length = 2427
Score = 30.2 bits (15), Expect = 1.9
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 123 tgccttcgagcagca 137
|||||||||||||||
Sbjct: 713 tgccttcgagcagca 699
>ISHch2
Length = 1633
Score = 30.2 bits (15), Expect = 1.9
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 301 ggcaggacgcggtgg 315
|||||||||||||||
Sbjct: 196 ggcaggacgcggtgg 182
>ISAzo3
Length = 1282
Score = 30.2 bits (15), Expect = 1.9
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 337 gccgcctcgaaggcc 351
|||||||||||||||
Sbjct: 395 gccgcctcgaaggcc 381
>ISBcen1
Length = 1357
Score = 30.2 bits (15), Expect = 1.9
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 258 tgcggcaaagtcgcg 272
|||||||||||||||
Sbjct: 803 tgcggcaaagtcgcg 789
>ISPsp3
Length = 1190
Score = 30.2 bits (15), Expect = 1.9
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 49 aaagcgcacatcggggtgg 67
|||||||||||||| ||||
Sbjct: 587 aaagcgcacatcggcgtgg 605
>ISSna1
Length = 1560
Score = 28.2 bits (14), Expect = 7.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 305 ggacgcggtggtcg 318
||||||||||||||
Sbjct: 1093 ggacgcggtggtcg 1080
>TnAs3
Length = 18735
Score = 28.2 bits (14), Expect = 7.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 338 ccgcctcgaaggcc 351
||||||||||||||
Sbjct: 3578 ccgcctcgaaggcc 3565
Score = 28.2 bits (14), Expect = 7.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 330 cgcgcgcgccgcct 343
||||||||||||||
Sbjct: 12221 cgcgcgcgccgcct 12234
>ISAeme13
Length = 1425
Score = 28.2 bits (14), Expect = 7.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 287 gctctgccagatgg 300
||||||||||||||
Sbjct: 575 gctctgccagatgg 588
>ISMno24
Length = 2157
Score = 28.2 bits (14), Expect = 7.4
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 151 gtcggcggcggtggggaa 168
||||||||||||| ||||
Sbjct: 861 gtcggcggcggtgcggaa 878
>ISHsi2
Length = 1833
Score = 28.2 bits (14), Expect = 7.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 147 cggcgtcggcggcg 160
||||||||||||||
Sbjct: 1458 cggcgtcggcggcg 1471
>ISHru1
Length = 1527
Score = 28.2 bits (14), Expect = 7.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 339 cgcctcgaaggcca 352
||||||||||||||
Sbjct: 883 cgcctcgaaggcca 896
>ISAs30
Length = 1426
Score = 28.2 bits (14), Expect = 7.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 287 gctctgccagatgg 300
||||||||||||||
Sbjct: 576 gctctgccagatgg 589
>ISBte1
Length = 2143
Score = 28.2 bits (14), Expect = 7.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 226 caactggccagcgg 239
||||||||||||||
Sbjct: 1071 caactggccagcgg 1058
>ISSusp4
Length = 1443
Score = 28.2 bits (14), Expect = 7.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 68 gccagcaggatctg 81
||||||||||||||
Sbjct: 255 gccagcaggatctg 268
>ISHsa1
Length = 1467
Score = 28.2 bits (14), Expect = 7.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 267 gtcgcgtcgcaaga 280
||||||||||||||
Sbjct: 1466 gtcgcgtcgcaaga 1453
>ISEc37
Length = 1828
Score = 28.2 bits (14), Expect = 7.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 284 ccagctctgccaga 297
||||||||||||||
Sbjct: 1597 ccagctctgccaga 1584
>ISAzs8
Length = 1373
Score = 28.2 bits (14), Expect = 7.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 151 gtcggcggcggtgg 164
||||||||||||||
Sbjct: 1035 gtcggcggcggtgg 1022
>ISRme6
Length = 913
Score = 28.2 bits (14), Expect = 7.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 326 cggccgcgcgcgcc 339
||||||||||||||
Sbjct: 609 cggccgcgcgcgcc 596
>ISGau7
Length = 2510
Score = 28.2 bits (14), Expect = 7.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 152 tcggcggcggtggg 165
||||||||||||||
Sbjct: 2212 tcggcggcggtggg 2199
>ISGau2
Length = 1197
Score = 28.2 bits (14), Expect = 7.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 134 agcaacgccacatc 147
||||||||||||||
Sbjct: 926 agcaacgccacatc 939
>ISAcp2
Length = 1025
Score = 28.2 bits (14), Expect = 7.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 328 gccgcgcgcgccgc 341
||||||||||||||
Sbjct: 417 gccgcgcgcgccgc 404
>ISPna3
Length = 1425
Score = 28.2 bits (14), Expect = 7.4
Identities = 23/26 (88%)
Strand = Plus / Minus
Query: 321 caggccggccgcgcgcgccgcctcga 346
|||||||||||| || ||||| ||||
Sbjct: 533 caggccggccgcacgggccgcttcga 508
>ISUnCu2
Length = 1491
Score = 28.2 bits (14), Expect = 7.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 222 gcgccaactggcca 235
||||||||||||||
Sbjct: 808 gcgccaactggcca 821
>ISFsp12
Length = 1730
Score = 28.2 bits (14), Expect = 7.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 302 gcaggacgcggtgg 315
||||||||||||||
Sbjct: 1468 gcaggacgcggtgg 1455
>ISRop2
Length = 2171
Score = 28.2 bits (14), Expect = 7.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 327 ggccgcgcgcgccg 340
||||||||||||||
Sbjct: 1410 ggccgcgcgcgccg 1423
>ISMpo10
Length = 4911
Score = 28.2 bits (14), Expect = 7.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 323 ggccggccgcgcgc 336
||||||||||||||
Sbjct: 3403 ggccggccgcgcgc 3390
>ISMno23
Length = 2271
Score = 28.2 bits (14), Expect = 7.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 169 ggcgttcatcgtgg 182
||||||||||||||
Sbjct: 324 ggcgttcatcgtgg 311
>ISAar24
Length = 1270
Score = 28.2 bits (14), Expect = 7.4
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 84 gcatccacgaggacaccc 101
|||||||||||| |||||
Sbjct: 160 gcatccacgaggtcaccc 177
>ISRop1
Length = 4160
Score = 28.2 bits (14), Expect = 7.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 270 gcgtcgcaagaagg 283
||||||||||||||
Sbjct: 904 gcgtcgcaagaagg 917
>ISMsm12
Length = 3256
Score = 28.2 bits (14), Expect = 7.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 329 ccgcgcgcgccgcc 342
||||||||||||||
Sbjct: 2372 ccgcgcgcgccgcc 2385
>ISMyma7
Length = 1694
Score = 28.2 bits (14), Expect = 7.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 302 gcaggacgcggtgg 315
||||||||||||||
Sbjct: 917 gcaggacgcggtgg 930
>ISMex38
Length = 3841
Score = 28.2 bits (14), Expect = 7.4
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 331 gcgcgcgccgcctcgaag 348
||||||||||||| ||||
Sbjct: 2036 gcgcgcgccgccttgaag 2019
>ISAnsp4
Length = 2195
Score = 28.2 bits (14), Expect = 7.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 333 gcgcgccgcctcga 346
||||||||||||||
Sbjct: 279 gcgcgccgcctcga 292
>ISRce1
Length = 1267
Score = 28.2 bits (14), Expect = 7.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 147 cggcgtcggcggcg 160
||||||||||||||
Sbjct: 1013 cggcgtcggcggcg 1000
>ISCARN104
Length = 2483
Score = 28.2 bits (14), Expect = 7.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 277 aagaaggccagctc 290
||||||||||||||
Sbjct: 2178 aagaaggccagctc 2191
>ISCARN76
Length = 1208
Score = 28.2 bits (14), Expect = 7.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 17 tcttcgcggcggct 30
||||||||||||||
Sbjct: 135 tcttcgcggcggct 122
>ISBj5_B
Length = 1524
Score = 28.2 bits (14), Expect = 7.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 345 gaaggccacctcgg 358
||||||||||||||
Sbjct: 1334 gaaggccacctcgg 1347
>ISStpr1
Length = 1052
Score = 28.2 bits (14), Expect = 7.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 321 caggccggccgcgc 334
||||||||||||||
Sbjct: 575 caggccggccgcgc 588
>ISCARN23
Length = 1907
Score = 28.2 bits (14), Expect = 7.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 327 ggccgcgcgcgccg 340
||||||||||||||
Sbjct: 618 ggccgcgcgcgccg 631
>ISCARN1
Length = 2232
Score = 28.2 bits (14), Expect = 7.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 31 gccgagaaacacca 44
||||||||||||||
Sbjct: 2173 gccgagaaacacca 2186
>ISMlu1
Length = 1413
Score = 28.2 bits (14), Expect = 7.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 306 gacgcggtggtcgg 319
||||||||||||||
Sbjct: 240 gacgcggtggtcgg 253
>ISGdi7
Length = 1518
Score = 28.2 bits (14), Expect = 7.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 223 cgccaactggccag 236
||||||||||||||
Sbjct: 901 cgccaactggccag 914
>ISAli17
Length = 1109
Score = 28.2 bits (14), Expect = 7.4
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 317 cgggcaggccggccgcgc 334
|||| |||||||||||||
Sbjct: 267 cgggaaggccggccgcgc 250
>ISAli4
Length = 1324
Score = 28.2 bits (14), Expect = 7.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 242 cgagcaggcgccgg 255
||||||||||||||
Sbjct: 1205 cgagcaggcgccgg 1192
>ISMpo2
Length = 3089
Score = 28.2 bits (14), Expect = 7.4
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 208 acgcccatcatgccgcgc 225
|||||| |||||||||||
Sbjct: 824 acgcccttcatgccgcgc 807
>ISDge5
Length = 1150
Score = 28.2 bits (14), Expect = 7.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 33 cgagaaacaccagc 46
||||||||||||||
Sbjct: 968 cgagaaacaccagc 955
>ISHne5
Length = 1182
Score = 28.2 bits (14), Expect = 7.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 328 gccgcgcgcgccgc 341
||||||||||||||
Sbjct: 553 gccgcgcgcgccgc 566
>ISTesp2
Length = 1397
Score = 28.2 bits (14), Expect = 7.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 151 gtcggcggcggtgg 164
||||||||||||||
Sbjct: 287 gtcggcggcggtgg 300
>ISAzo9
Length = 1483
Score = 28.2 bits (14), Expect = 7.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 68 gccagcaggatctg 81
||||||||||||||
Sbjct: 460 gccagcaggatctg 447
>ISOgr3
Length = 1052
Score = 28.2 bits (14), Expect = 7.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 141 ccacatcggcgtcg 154
||||||||||||||
Sbjct: 512 ccacatcggcgtcg 525
>ISPst8
Length = 910
Score = 28.2 bits (14), Expect = 7.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 234 cagcggtgcgagca 247
||||||||||||||
Sbjct: 364 cagcggtgcgagca 377
>ISPsy20
Length = 2572
Score = 28.2 bits (14), Expect = 7.4
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 27 ggctgccgagaaacacca 44
||||| ||||||||||||
Sbjct: 192 ggctgtcgagaaacacca 209
>ISNmu3
Length = 1323
Score = 28.2 bits (14), Expect = 7.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 38 aacaccagcgcaaa 51
||||||||||||||
Sbjct: 806 aacaccagcgcaaa 793
>ISRpa1
Length = 2091
Score = 28.2 bits (14), Expect = 7.4
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 208 acgcccatcatgccgcgc 225
|||||| |||||||||||
Sbjct: 850 acgcccttcatgccgcgc 833
>ISRso20
Length = 1287
Score = 28.2 bits (14), Expect = 7.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 228 actggccagcggtg 241
||||||||||||||
Sbjct: 400 actggccagcggtg 387
>ISFal3B
Length = 1130
Score = 28.2 bits (14), Expect = 7.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 159 cggtggggaaggcg 172
||||||||||||||
Sbjct: 1067 cggtggggaaggcg 1080
>ISXo5
Length = 1058
Score = 28.2 bits (14), Expect = 7.4
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 234 cagcggtgcgagcaggcg 251
|||| |||||||||||||
Sbjct: 160 cagcagtgcgagcaggcg 177
>IS1661
Length = 1441
Score = 28.2 bits (14), Expect = 7.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 139 cgccacatcggcgt 152
||||||||||||||
Sbjct: 1160 cgccacatcggcgt 1147
>ISBlo7
Length = 1272
Score = 28.2 bits (14), Expect = 7.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 324 gccggccgcgcgcg 337
||||||||||||||
Sbjct: 843 gccggccgcgcgcg 856
>ISBlo3
Length = 1480
Score = 28.2 bits (14), Expect = 7.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 241 gcgagcaggcgccg 254
||||||||||||||
Sbjct: 1100 gcgagcaggcgccg 1087
>ISXc4
Length = 6938
Score = 28.2 bits (14), Expect = 7.4
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 321 caggccggccgcgcgcgc 338
|||| |||||||||||||
Sbjct: 3665 caggtcggccgcgcgcgc 3648
>Tn3
Length = 4948
Score = 28.2 bits (14), Expect = 7.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 294 cagatggggcagga 307
||||||||||||||
Sbjct: 3106 cagatggggcagga 3093
>ISRso14
Length = 1234
Score = 28.2 bits (14), Expect = 7.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 147 cggcgtcggcggcg 160
||||||||||||||
Sbjct: 624 cggcgtcggcggcg 611
>IS220
Length = 3257
Score = 28.2 bits (14), Expect = 7.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 329 ccgcgcgcgccgcc 342
||||||||||||||
Sbjct: 2373 ccgcgcgcgccgcc 2386
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_76_length_369_cov_0.681507_ID_5324
(369 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISThsp7 | IS1634 | Thiomonas sp. | 30 | 1.9 | |
| ISGme4 | IS21 | Geobacter metallireducens | 30 | 1.9 | |
| ISAzo25 | IS1182 | Azoarcus sp. | 30 | 1.9 | |
| ISAeme20 | IS3 | IS3 | Aeromonas media | 28 | 7.4 |
| ISHwa34 | IS200/IS605 | IS1341 | Haloquadratum walsbyi | 28 | 7.4 |
| ISNaoc2 | IS200/IS605 | IS1341 | Natronococcus occultus | 28 | 7.4 |
| ISNma20 | IS607 | Natrialba magadii | 28 | 7.4 | |
| ISHbo6 | IS200/IS605 | IS1341 | Halogeometricum borinquense | 28 | 7.4 |
| ISHxa1 | IS200/IS605 | IS1341 | Halopiger xanaduensis | 28 | 7.4 |
| ISHmu7 | IS200/IS605 | IS1341 | Halomicrobium mukohataei | 28 | 7.4 |
| ISMem1 | IS5 | Methanohalophilus mahii | 28 | 7.4 | |
| ISBvi5 | IS5 | IS427 | Burkholderia vietnamiensis | 28 | 7.4 |
| ISMex38 | Tn3 | Methylobacterium extorquens | 28 | 7.4 | |
| ISCARN68 | IS256 | Metagenomic data from CARNOULES | 28 | 7.4 | |
| ISGur14 | IS701 | Geobacter uraniumreducens | 28 | 7.4 | |
| ISLpl3 | IS5 | IS427 | Lactobacillus plantarum | 28 | 7.4 |
| ISRm9 | IS21 | - | Rhizobium meliloti | 28 | 7.4 |
| ISDpr7 | ISAzo13 | Delta proteobacterium | 28 | 7.4 | |
| ISMav1 | IS21 | - | Mycobacterium avium | 28 | 7.4 |
| IS1612 | IS21 | - | Mycobacterium avium | 28 | 7.4 |
>ISThsp7
Length = 1920
Score = 30.2 bits (15), Expect = 1.9
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 342 ctcgcacggggctgt 356
|||||||||||||||
Sbjct: 1189 ctcgcacggggctgt 1175
>ISGme4
Length = 1976
Score = 30.2 bits (15), Expect = 1.9
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 169 tttcggcggcaacac 183
|||||||||||||||
Sbjct: 1748 tttcggcggcaacac 1762
>ISAzo25
Length = 1388
Score = 30.2 bits (15), Expect = 1.9
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 170 ttcggcggcaacacc 184
|||||||||||||||
Sbjct: 1226 ttcggcggcaacacc 1240
>ISAeme20
Length = 1264
Score = 28.2 bits (14), Expect = 7.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 68 tggttggctatcca 81
||||||||||||||
Sbjct: 381 tggttggctatcca 368
>ISHwa34
Length = 1466
Score = 28.2 bits (14), Expect = 7.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 190 ttcgagaactcgct 203
||||||||||||||
Sbjct: 385 ttcgagaactcgct 372
>ISNaoc2
Length = 1458
Score = 28.2 bits (14), Expect = 7.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 190 ttcgagaactcgct 203
||||||||||||||
Sbjct: 389 ttcgagaactcgct 376
>ISNma20
Length = 2469
Score = 28.2 bits (14), Expect = 7.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 87 tccgcagaaaacgg 100
||||||||||||||
Sbjct: 1198 tccgcagaaaacgg 1185
>ISHbo6
Length = 1456
Score = 28.2 bits (14), Expect = 7.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 190 ttcgagaactcgct 203
||||||||||||||
Sbjct: 387 ttcgagaactcgct 374
>ISHxa1
Length = 1457
Score = 28.2 bits (14), Expect = 7.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 190 ttcgagaactcgct 203
||||||||||||||
Sbjct: 388 ttcgagaactcgct 375
>ISHmu7
Length = 1455
Score = 28.2 bits (14), Expect = 7.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 190 ttcgagaactcgct 203
||||||||||||||
Sbjct: 386 ttcgagaactcgct 373
>ISMem1
Length = 1004
Score = 28.2 bits (14), Expect = 7.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 160 tgagtatattttcg 173
||||||||||||||
Sbjct: 215 tgagtatattttcg 202
>ISBvi5
Length = 915
Score = 28.2 bits (14), Expect = 7.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 239 gtgatcgcgaagcg 252
||||||||||||||
Sbjct: 703 gtgatcgcgaagcg 716
>ISMex38
Length = 3841
Score = 28.2 bits (14), Expect = 7.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 258 cgatctgaaccgct 271
||||||||||||||
Sbjct: 2073 cgatctgaaccgct 2086
>ISCARN68
Length = 1419
Score = 28.2 bits (14), Expect = 7.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 245 gcgaagcgagccac 258
||||||||||||||
Sbjct: 42 gcgaagcgagccac 55
>ISGur14
Length = 1529
Score = 28.2 bits (14), Expect = 7.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 200 cgctccatgagcgc 213
||||||||||||||
Sbjct: 1201 cgctccatgagcgc 1188
>ISLpl3
Length = 852
Score = 28.2 bits (14), Expect = 7.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 149 caacgagtgcgtga 162
||||||||||||||
Sbjct: 472 caacgagtgcgtga 459
>ISRm9
Length = 2798
Score = 28.2 bits (14), Expect = 7.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 204 ccatgagcgcaatg 217
||||||||||||||
Sbjct: 1504 ccatgagcgcaatg 1517
>ISDpr7
Length = 1289
Score = 28.2 bits (14), Expect = 7.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 61 cctcgggtggttgg 74
||||||||||||||
Sbjct: 371 cctcgggtggttgg 358
>ISMav1
Length = 2536
Score = 28.2 bits (14), Expect = 7.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 64 cgggtggttggcta 77
||||||||||||||
Sbjct: 2479 cgggtggttggcta 2466
>IS1612
Length = 2532
Score = 28.2 bits (14), Expect = 7.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 64 cgggtggttggcta 77
||||||||||||||
Sbjct: 2475 cgggtggttggcta 2462
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_77_length_366_cov_0.636678_ID_5326
(366 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISAcp1 | IS5 | IS5 | Acidobacterium capsulatum | 32 | 0.47 |
| ISArsp6 | Tn3 | Arthrobacter sp. | 32 | 0.47 | |
| IS4811 | IS5 | IS1031 | Streptomyces lividans | 32 | 0.47 |
| ISNmo4 | IS5 | IS5 | Nitrococcus mobilis | 30 | 1.8 |
| ISMch6 | IS110 | Methylobacterium chloromethanicum | 30 | 1.8 | |
| ISPfr15 | IS481 | Propionibacterium freudenreichii | 30 | 1.8 | |
| ISNml2 | IS1380 | Nakamurella multipartita | 30 | 1.8 | |
| ISBma2 | IS1182 | Burkholderia mallei | 30 | 1.8 | |
| ISBusp1 | Tn3 | Burkholderia sp. | 30 | 1.8 | |
| ISAzo34 | IS256 | Azoarcus sp. | 30 | 1.8 | |
| ISTth2 | IS4 | IS10 | Thermus thermophilus | 30 | 1.8 |
| ISTha3 | IS91 | Thauera sp. | 28 | 7.3 | |
| ISMex45 | IS200/IS605 | IS1341 | Methylobacterium extorquens | 28 | 7.3 |
| ISBdi2 | IS1380 | Bradyrhizobium diazoefficiens | 28 | 7.3 | |
| ISPa53 | IS110 | IS1111 | Pseudomonas aeruginosa | 28 | 7.3 |
| ISSiac4 | ISKra4 | ISKra4 | Singulisphaera acidiphila | 28 | 7.3 |
| ISKpn19 | ISKra4 | ISAzba1 | Klebsiella pneumoniae | 28 | 7.3 |
| ISLke1 | ISLre2 | Lactobacillus kefiranofaciens | 28 | 7.3 | |
| ISLhe13 | ISLre2 | Lactobacillus helveticus | 28 | 7.3 | |
| ISLcr2 | ISLre2 | Lactobacillus crispatus | 28 | 7.3 | |
| ISLcr1 | ISLre2 | Lactobacillus crispatus | 28 | 7.3 | |
| ISTni2 | IS481 | Thioalkalivibrio nitratireducens | 28 | 7.3 | |
| ISSuac1 | IS256 | Sulfobacillus acidophilus | 28 | 7.3 | |
| ISKra3 | ISAzo13 | Ktedonobacter racemifer | 28 | 7.3 | |
| ISPa40 | Tn3 | Pseudomonas aeruginosa | 28 | 7.3 | |
| ISAzs37 | IS630 | Azospirillum sp. | 28 | 7.3 | |
| ISNph5 | IS200/IS605 | Natronomonas pharaonis | 28 | 7.3 | |
| ISRel24 | IS66 | Rhizobium etli | 28 | 7.3 | |
| ISMgi2 | IS1182 | Mycobacterium gilvum | 28 | 7.3 | |
| ISRhsp7 | IS5 | Rhodobacter sphaeroides | 28 | 7.3 | |
| ISMtsp15 | IS481 | Methylobacterium sp. | 28 | 7.3 | |
| ISAar43 | IS3 | IS407 | Arthrobacter arilaitensis | 28 | 7.3 |
| ISAar29 | IS110 | Arthrobacter arilaitensis | 28 | 7.3 | |
| IS693 | IS66 | Rhizobium sp. | 28 | 7.3 | |
| ISMesp2 | IS1380 | Mesorhizobium sp. | 28 | 7.3 | |
| ISArch2 | IS1182 | Uncultured archaeon | 28 | 7.3 | |
| ISMex38 | Tn3 | Methylobacterium extorquens | 28 | 7.3 | |
| ISMdi1 | IS630 | Methylobacterium dichloromethanicum | 28 | 7.3 | |
| ISAnsp4 | IS21 | Anaeromyxobacter sp. | 28 | 7.3 | |
| ISRce1 | ISAs1 | Rhodospirillum centenum | 28 | 7.3 | |
| ISCARN42 | IS701 | Metagenomic data from CARNOULES | 28 | 7.3 | |
| ISBad1 | IS21 | Bifidobacterium adolescentis | 28 | 7.3 | |
| ISRhba1 | IS1595 | ISNwi1 | Rhodobacterales bacterium | 28 | 7.3 |
| ISTth3 | IS1634 | Thermus thermophilus | 28 | 7.3 | |
| ISLhe10 | ISLre2 | Lactobacillus helveticus | 28 | 7.3 | |
| ISHsp1 | IS5 | IS5 | Halomonas sp. | 28 | 7.3 |
| ISMav2 | IS481 | - | Mycobacterium avium | 28 | 7.3 |
| ISBj1 | IS1380 | - | Bradyrhizobium japonicum | 28 | 7.3 |
| IS4 | IS4 | IS4 | Escherichia coli | 28 | 7.3 |
>ISAcp1
Length = 1483
Score = 32.2 bits (16), Expect = 0.47
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 231 gccgcgagcagggcgt 246
||||||||||||||||
Sbjct: 1329 gccgcgagcagggcgt 1314
>ISArsp6
Length = 26712
Score = 32.2 bits (16), Expect = 0.47
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 249 tgccgggcggcgtagt 264
||||||||||||||||
Sbjct: 26670 tgccgggcggcgtagt 26655
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 332 gaccatcaccccgg 345
||||||||||||||
Sbjct: 25344 gaccatcaccccgg 25331
>IS4811
Length = 5396
Score = 32.2 bits (16), Expect = 0.47
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 351 cgccggtgcgggccgg 366
||||||||||||||||
Sbjct: 4025 cgccggtgcgggccgg 4010
>ISNmo4
Length = 1176
Score = 30.2 bits (15), Expect = 1.8
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 199 gcgcggcgcgcgggg 213
|||||||||||||||
Sbjct: 760 gcgcggcgcgcgggg 774
>ISMch6
Length = 1379
Score = 30.2 bits (15), Expect = 1.8
Identities = 21/23 (91%)
Strand = Plus / Minus
Query: 122 atcgagcgcgtagacgatggtgt 144
|||| ||||| ||||||||||||
Sbjct: 772 atcgggcgcgcagacgatggtgt 750
>ISPfr15
Length = 1097
Score = 30.2 bits (15), Expect = 1.8
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 296 ccactcggcggccag 310
|||||||||||||||
Sbjct: 952 ccactcggcggccag 938
>ISNml2
Length = 1689
Score = 30.2 bits (15), Expect = 1.8
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 216 agccgatggcggtgc 230
|||||||||||||||
Sbjct: 272 agccgatggcggtgc 286
>ISBma2
Length = 1573
Score = 30.2 bits (15), Expect = 1.8
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 334 ccatcaccccggcaa 348
|||||||||||||||
Sbjct: 949 ccatcaccccggcaa 935
>ISBusp1
Length = 3169
Score = 30.2 bits (15), Expect = 1.8
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 209 cgggggcagccgatggcgg 227
|||||||||||||| ||||
Sbjct: 2802 cgggggcagccgatcgcgg 2820
>ISAzo34
Length = 1439
Score = 30.2 bits (15), Expect = 1.8
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 198 ggcgcggcgcgcggg 212
|||||||||||||||
Sbjct: 190 ggcgcggcgcgcggg 204
>ISTth2
Length = 1184
Score = 30.2 bits (15), Expect = 1.8
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 214 gcagccgatggcggt 228
|||||||||||||||
Sbjct: 925 gcagccgatggcggt 911
>ISTha3
Length = 2424
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 350 gcgccggtgcgggc 363
||||||||||||||
Sbjct: 292 gcgccggtgcgggc 305
>ISMex45
Length = 1270
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 199 gcgcggcgcgcggg 212
||||||||||||||
Sbjct: 285 gcgcggcgcgcggg 298
>ISBdi2
Length = 1622
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 323 gaacatatcgacca 336
||||||||||||||
Sbjct: 334 gaacatatcgacca 321
>ISPa53
Length = 1381
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 188 ggcgaccactggcg 201
||||||||||||||
Sbjct: 787 ggcgaccactggcg 774
>ISSiac4
Length = 1519
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 42 ccaaagccggcgtc 55
||||||||||||||
Sbjct: 514 ccaaagccggcgtc 501
>ISKpn19
Length = 2851
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 207 cgcgggggcagccg 220
||||||||||||||
Sbjct: 1993 cgcgggggcagccg 1980
>ISLke1
Length = 1599
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 217 gccgatggcggtgc 230
||||||||||||||
Sbjct: 879 gccgatggcggtgc 892
>ISLhe13
Length = 1599
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 217 gccgatggcggtgc 230
||||||||||||||
Sbjct: 879 gccgatggcggtgc 892
>ISLcr2
Length = 1599
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 217 gccgatggcggtgc 230
||||||||||||||
Sbjct: 879 gccgatggcggtgc 892
>ISLcr1
Length = 1597
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 217 gccgatggcggtgc 230
||||||||||||||
Sbjct: 877 gccgatggcggtgc 890
>ISTni2
Length = 3451
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 254 ggcggcgtagtcgg 267
||||||||||||||
Sbjct: 2189 ggcggcgtagtcgg 2176
>ISSuac1
Length = 1414
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 212 gggcagccgatggc 225
||||||||||||||
Sbjct: 369 gggcagccgatggc 382
>ISKra3
Length = 1287
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 50 ggcgtcgcgcgtcc 63
||||||||||||||
Sbjct: 729 ggcgtcgcgcgtcc 716
>ISPa40
Length = 6592
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 235 cgagcagggcgtac 248
||||||||||||||
Sbjct: 1050 cgagcagggcgtac 1063
>ISAzs37
Length = 1058
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 199 gcgcggcgcgcggg 212
||||||||||||||
Sbjct: 841 gcgcggcgcgcggg 854
>ISNph5
Length = 1847
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 278 accgggatgccaga 291
||||||||||||||
Sbjct: 1482 accgggatgccaga 1469
>ISRel24
Length = 2837
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 299 ctcggcggccagaa 312
||||||||||||||
Sbjct: 1635 ctcggcggccagaa 1622
>ISMgi2
Length = 1770
Score = 28.2 bits (14), Expect = 7.3
Identities = 23/26 (88%)
Strand = Plus / Minus
Query: 184 tgcgggcgaccactggcgcggcgcgc 209
||||||||||| || | |||||||||
Sbjct: 1407 tgcgggcgaccgctcgggcggcgcgc 1382
>ISRhsp7
Length = 1397
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 31 ctgcaacctcgcca 44
||||||||||||||
Sbjct: 1257 ctgcaacctcgcca 1270
>ISMtsp15
Length = 1122
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 284 atgccagatcggcc 297
||||||||||||||
Sbjct: 59 atgccagatcggcc 46
>ISAar43
Length = 1247
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 79 cgccgcggacggcg 92
||||||||||||||
Sbjct: 896 cgccgcggacggcg 883
>ISAar29
Length = 1385
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 5 ggcctggacgcccg 18
||||||||||||||
Sbjct: 803 ggcctggacgcccg 816
>IS693
Length = 3078
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 350 gcgccggtgcgggc 363
||||||||||||||
Sbjct: 1411 gcgccggtgcgggc 1398
>ISMesp2
Length = 1618
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 34 caacctcgccaaag 47
||||||||||||||
Sbjct: 1091 caacctcgccaaag 1104
>ISArch2
Length = 1924
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 304 cggccagaaaatga 317
||||||||||||||
Sbjct: 856 cggccagaaaatga 869
>ISMex38
Length = 3841
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 50 ggcgtcgcgcgtcc 63
||||||||||||||
Sbjct: 2736 ggcgtcgcgcgtcc 2723
>ISMdi1
Length = 1058
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 168 cagtcgtgctcgac 181
||||||||||||||
Sbjct: 768 cagtcgtgctcgac 781
>ISAnsp4
Length = 2195
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 229 gcgccgcgagcagg 242
||||||||||||||
Sbjct: 378 gcgccgcgagcagg 365
>ISRce1
Length = 1267
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 81 ccgcggacggcgtc 94
||||||||||||||
Sbjct: 1020 ccgcggacggcgtc 1007
>ISCARN42
Length = 1473
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 223 ggcggtgcgccgcg 236
||||||||||||||
Sbjct: 830 ggcggtgcgccgcg 817
>ISBad1
Length = 2525
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 81 ccgcggacggcgtc 94
||||||||||||||
Sbjct: 960 ccgcggacggcgtc 947
>ISRhba1
Length = 2457
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 96 gggcgtttgagacg 109
||||||||||||||
Sbjct: 1843 gggcgtttgagacg 1856
>ISTth3
Length = 1682
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 10 ggacgcccggcggg 23
||||||||||||||
Sbjct: 1031 ggacgcccggcggg 1044
>ISLhe10
Length = 1598
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 217 gccgatggcggtgc 230
||||||||||||||
Sbjct: 878 gccgatggcggtgc 891
>ISHsp1
Length = 1518
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 7 cctggacgcccggc 20
||||||||||||||
Sbjct: 282 cctggacgcccggc 269
>ISMav2
Length = 1361
Score = 28.2 bits (14), Expect = 7.3
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 349 agcgccggtgcgggccgg 366
||||| ||||||||||||
Sbjct: 438 agcgctggtgcgggccgg 455
>ISBj1
Length = 2071
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 323 gaacatatcgacca 336
||||||||||||||
Sbjct: 676 gaacatatcgacca 663
>IS4
Length = 1426
Score = 28.2 bits (14), Expect = 7.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 271 gcgcttcaccggga 284
||||||||||||||
Sbjct: 1253 gcgcttcaccggga 1266
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_78_length_362_cov_2.64912_ID_5328
(362 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| IS4811 | IS5 | IS1031 | Streptomyces lividans | 34 | 0.12 |
| ISAcma5 | IS5 | IS1031 | Acaryochloris marina | 32 | 0.46 |
| ISAau4 | Tn3 | Arthrobacter aurescens | 32 | 0.46 | |
| ISHaha8 | IS200/IS605 | IS1341 | Halobacillus halophilus | 30 | 1.8 |
| ISAzs20 | IS66 | Azospirillum sp. | 30 | 1.8 | |
| ISArsp6 | Tn3 | Arthrobacter sp. | 30 | 1.8 | |
| ISKol1 | IS21 | Kosmotoga olearia | 30 | 1.8 | |
| ISCARN23 | IS1634 | Metagenomic data from CARNOULES | 30 | 1.8 | |
| ISPpu4 | IS3 | IS3 | Pseudomonas putida | 30 | 1.8 |
| TnAs3 | Tn3 | Aeromonas salmonicida | 28 | 7.2 | |
| ISHmu9 | IS6 | Halomicrobium mukohataei | 28 | 7.2 | |
| ISPa52 | IS5 | IS5 | Pseudomonas aeruginosa | 28 | 7.2 |
| ISGlsp1 | ISKra4 | ISMich2 | Gloeocapsa sp. | 28 | 7.2 |
| ISHth1 | ISH6 | Halococcus thailandensis | 28 | 7.2 | |
| ISCsa4 | IS110 | Caldicellulosiruptor saccharolyticus | 28 | 7.2 | |
| ISPa36 | IS21 | Pseudomonas aeruginosa | 28 | 7.2 | |
| ISAs12 | ISAs1 | Aeromonas salmonicida | 28 | 7.2 | |
| ISBmu30 | IS66 | Burkholderia multivorans | 28 | 7.2 | |
| ISPfr20 | ISL3 | Propionibacterium freudenreichii | 28 | 7.2 | |
| ISBli4 | IS1380 | Brevibacterium linens | 28 | 7.2 | |
| ISRgn2 | IS66 | Ruminococcus gnavus | 28 | 7.2 | |
| ISAar1 | IS1595 | ISSod11 | Arthrobacter arilaitensis | 28 | 7.2 |
| ISSav5 | IS481 | Streptomyces avermitilis | 28 | 7.2 | |
| ISSpu15 | IS21 | Shewanella putrefaciens | 28 | 7.2 | |
| ISSba14 | Tn3 | Shewanella baltica | 28 | 7.2 | |
| ISAli2 | IS630 | Azospirillum lipoferum | 28 | 7.2 | |
| ISMsm6 | IS1634 | Mycobacterium smegmatis | 28 | 7.2 | |
| ISRhsp4 | IS5 | IS427 | Rhodobacter sphaeroides | 28 | 7.2 |
| ISMlo4 | IS3 | IS51 | Mesorhizobium loti | 28 | 7.2 |
| ISMca6 | ISAs1 | Methylococcus capsulatus | 28 | 7.2 | |
| ISLrh4 | ISLre2 | Lactobacillus rhamnosus | 28 | 7.2 | |
| ISBcen16 | IS3 | IS150 | Burkholderia cenocepacia | 28 | 7.2 |
| ISBmu3 | IS21 | Burkholderia multivorans | 28 | 7.2 | |
| ISPpa2 | IS5 | IS427 | Paracoccus pantotrophus | 28 | 7.2 |
| ISWz1 | IS91 | - | Weeksella zoohelcum | 28 | 7.2 |
| ISSco1 | IS481 | - | Streptomyces coelicolor | 28 | 7.2 |
| ISPpu3 | IS630 | - | Pseudomonas putida | 28 | 7.2 |
| ISPa42 | Tn3 | Pseudomonas aeruginosa | 28 | 7.2 | |
| ISNGR9 | IS5 | IS427 | Rhizobium sp | 28 | 7.2 |
| ISMav1 | IS21 | - | Mycobacterium avium | 28 | 7.2 |
| ISAav2 | IS5 | IS903 | Acidovorax avenae | 28 | 7.2 |
| IS1652 | IS481 | - | Streptomyces coelicolor | 28 | 7.2 |
| IS1649 | IS481 | - | Streptomyces coelicolor | 28 | 7.2 |
| IS1612 | IS21 | - | Mycobacterium avium | 28 | 7.2 |
| IS1248B | IS5 | IS427 | Paracoccus denitrificans | 28 | 7.2 |
| IS1248A | IS5 | IS427 | Paracoccus denitrificans | 28 | 7.2 |
>IS4811
Length = 5396
Score = 34.2 bits (17), Expect = 0.12
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 71 ggtgaccatcaccatca 87
|||||||||||||||||
Sbjct: 2490 ggtgaccatcaccatca 2474
>ISAcma5
Length = 898
Score = 32.2 bits (16), Expect = 0.46
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 72 gtgaccatcaccatca 87
||||||||||||||||
Sbjct: 522 gtgaccatcaccatca 507
>ISAau4
Length = 3898
Score = 32.2 bits (16), Expect = 0.46
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 225 gaaaccgtcacggccc 240
||||||||||||||||
Sbjct: 3728 gaaaccgtcacggccc 3713
>ISHaha8
Length = 1367
Score = 30.2 bits (15), Expect = 1.8
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 61 aaaacggtgaggtga 75
|||||||||||||||
Sbjct: 1136 aaaacggtgaggtga 1150
Score = 30.2 bits (15), Expect = 1.8
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 346 aaaacggtgaggtga 360
|||||||||||||||
Sbjct: 1136 aaaacggtgaggtga 1150
>ISAzs20
Length = 2811
Score = 30.2 bits (15), Expect = 1.8
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 156 ggcgtggacgtcagc 170
|||||||||||||||
Sbjct: 221 ggcgtggacgtcagc 235
>ISArsp6
Length = 26712
Score = 30.2 bits (15), Expect = 1.8
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 26 cctggacatcagcgg 40
|||||||||||||||
Sbjct: 12830 cctggacatcagcgg 12844
Score = 30.2 bits (15), Expect = 1.8
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 311 cctggacatcagcgg 325
|||||||||||||||
Sbjct: 12830 cctggacatcagcgg 12844
>ISKol1
Length = 2383
Score = 30.2 bits (15), Expect = 1.8
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 122 caccgtggatgaaaa 136
|||||||||||||||
Sbjct: 1581 caccgtggatgaaaa 1595
>ISCARN23
Length = 1907
Score = 30.2 bits (15), Expect = 1.8
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 167 cagcggcctgaccga 181
|||||||||||||||
Sbjct: 1746 cagcggcctgaccga 1760
>ISPpu4
Length = 1663
Score = 30.2 bits (15), Expect = 1.8
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 44 cagcaccgacgtggc 58
|||||||||||||||
Sbjct: 917 cagcaccgacgtggc 931
Score = 30.2 bits (15), Expect = 1.8
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 329 cagcaccgacgtggc 343
|||||||||||||||
Sbjct: 917 cagcaccgacgtggc 931
>TnAs3
Length = 18735
Score = 28.2 bits (14), Expect = 7.2
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 222 ggcgaaaccgtcacggcc 239
|||||| |||||||||||
Sbjct: 2622 ggcgaagccgtcacggcc 2639
>ISHmu9
Length = 697
Score = 28.2 bits (14), Expect = 7.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 335 cgacgtggctgaaa 348
||||||||||||||
Sbjct: 627 cgacgtggctgaaa 614
Score = 28.2 bits (14), Expect = 7.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 50 cgacgtggctgaaa 63
||||||||||||||
Sbjct: 627 cgacgtggctgaaa 614
>ISPa52
Length = 1190
Score = 28.2 bits (14), Expect = 7.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 106 ccgtgaccaccacg 119
||||||||||||||
Sbjct: 647 ccgtgaccaccacg 634
>ISGlsp1
Length = 1200
Score = 28.2 bits (14), Expect = 7.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 71 ggtgaccatcacca 84
||||||||||||||
Sbjct: 751 ggtgaccatcacca 738
>ISHth1
Length = 1445
Score = 28.2 bits (14), Expect = 7.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 85 tcaccgaccagaac 98
||||||||||||||
Sbjct: 171 tcaccgaccagaac 184
>ISCsa4
Length = 1990
Score = 28.2 bits (14), Expect = 7.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 156 ggcgtggacgtcag 169
||||||||||||||
Sbjct: 1728 ggcgtggacgtcag 1715
>ISPa36
Length = 2468
Score = 28.2 bits (14), Expect = 7.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 110 gaccaccacggcca 123
||||||||||||||
Sbjct: 1184 gaccaccacggcca 1171
>ISAs12
Length = 1438
Score = 28.2 bits (14), Expect = 7.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 191 gaccatcgatgcgg 204
||||||||||||||
Sbjct: 983 gaccatcgatgcgg 970
>ISBmu30
Length = 2344
Score = 28.2 bits (14), Expect = 7.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 137 cggcgactacagcg 150
||||||||||||||
Sbjct: 1463 cggcgactacagcg 1476
>ISPfr20
Length = 1505
Score = 28.2 bits (14), Expect = 7.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 69 gaggtgaccatcac 82
||||||||||||||
Sbjct: 1134 gaggtgaccatcac 1147
>ISBli4
Length = 1713
Score = 28.2 bits (14), Expect = 7.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 105 accgtgaccaccac 118
||||||||||||||
Sbjct: 259 accgtgaccaccac 272
>ISRgn2
Length = 2745
Score = 28.2 bits (14), Expect = 7.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 187 agctgaccatcgat 200
||||||||||||||
Sbjct: 1271 agctgaccatcgat 1258
>ISAar1
Length = 1217
Score = 28.2 bits (14), Expect = 7.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 321 agcggtaccagcac 334
||||||||||||||
Sbjct: 338 agcggtaccagcac 325
Score = 28.2 bits (14), Expect = 7.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 36 agcggtaccagcac 49
||||||||||||||
Sbjct: 338 agcggtaccagcac 325
>ISSav5
Length = 1953
Score = 28.2 bits (14), Expect = 7.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 250 ccgagctggatgcg 263
||||||||||||||
Sbjct: 1739 ccgagctggatgcg 1726
>ISSpu15
Length = 2420
Score = 28.2 bits (14), Expect = 7.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 324 ggtaccagcaccga 337
||||||||||||||
Sbjct: 310 ggtaccagcaccga 297
Score = 28.2 bits (14), Expect = 7.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 39 ggtaccagcaccga 52
||||||||||||||
Sbjct: 310 ggtaccagcaccga 297
>ISSba14
Length = 3815
Score = 28.2 bits (14), Expect = 7.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 172 gcctgaccgacggt 185
||||||||||||||
Sbjct: 1801 gcctgaccgacggt 1788
>ISAli2
Length = 1171
Score = 28.2 bits (14), Expect = 7.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 268 cggccaacctgacc 281
||||||||||||||
Sbjct: 937 cggccaacctgacc 950
>ISMsm6
Length = 1765
Score = 28.2 bits (14), Expect = 7.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 74 gaccatcaccatca 87
||||||||||||||
Sbjct: 1646 gaccatcaccatca 1659
>ISRhsp4
Length = 840
Score = 28.2 bits (14), Expect = 7.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 258 gatgcggttgcggc 271
||||||||||||||
Sbjct: 703 gatgcggttgcggc 690
Score = 28.2 bits (14), Expect = 7.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 196 tcgatgcggttgcg 209
||||||||||||||
Sbjct: 705 tcgatgcggttgcg 692
>ISMlo4
Length = 1239
Score = 28.2 bits (14), Expect = 7.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 153 gccggcgtggacgt 166
||||||||||||||
Sbjct: 643 gccggcgtggacgt 630
>ISMca6
Length = 1180
Score = 28.2 bits (14), Expect = 7.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 196 tcgatgcggttgcg 209
||||||||||||||
Sbjct: 747 tcgatgcggttgcg 734
>ISLrh4
Length = 1577
Score = 28.2 bits (14), Expect = 7.2
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 80 caccatcaccgaccagaa 97
||||||||||| ||||||
Sbjct: 903 caccatcaccggccagaa 886
>ISBcen16
Length = 1445
Score = 28.2 bits (14), Expect = 7.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 169 gcggcctgaccgac 182
||||||||||||||
Sbjct: 889 gcggcctgaccgac 876
>ISBmu3
Length = 2697
Score = 28.2 bits (14), Expect = 7.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 78 atcaccatcaccga 91
||||||||||||||
Sbjct: 2676 atcaccatcaccga 2689
>ISPpa2
Length = 832
Score = 28.2 bits (14), Expect = 7.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 196 tcgatgcggttgcg 209
||||||||||||||
Sbjct: 707 tcgatgcggttgcg 694
>ISWz1
Length = 2270
Score = 28.2 bits (14), Expect = 7.2
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 224 cgaaaccgtcacggccca 241
|||||||||||| |||||
Sbjct: 1109 cgaaaccgtcactgccca 1126
>ISSco1
Length = 1057
Score = 28.2 bits (14), Expect = 7.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 25 acctggacatcagc 38
||||||||||||||
Sbjct: 821 acctggacatcagc 834
Score = 28.2 bits (14), Expect = 7.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 310 acctggacatcagc 323
||||||||||||||
Sbjct: 821 acctggacatcagc 834
>ISPpu3
Length = 1135
Score = 28.2 bits (14), Expect = 7.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 247 ctgccgagctggat 260
||||||||||||||
Sbjct: 782 ctgccgagctggat 795
>ISPa42
Length = 16941
Score = 28.2 bits (14), Expect = 7.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 248 tgccgagctggatg 261
||||||||||||||
Sbjct: 9464 tgccgagctggatg 9477
Score = 28.2 bits (14), Expect = 7.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 196 tcgatgcggttgcg 209
||||||||||||||
Sbjct: 10651 tcgatgcggttgcg 10638
Score = 28.2 bits (14), Expect = 7.2
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 308 caacctggacatcagcgg 325
|||| |||||||||||||
Sbjct: 11717 caacatggacatcagcgg 11700
Score = 28.2 bits (14), Expect = 7.2
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 23 caacctggacatcagcgg 40
|||| |||||||||||||
Sbjct: 11717 caacatggacatcagcgg 11700
>ISNGR9
Length = 857
Score = 28.2 bits (14), Expect = 7.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 196 tcgatgcggttgcg 209
||||||||||||||
Sbjct: 724 tcgatgcggttgcg 711
>ISMav1
Length = 2536
Score = 28.2 bits (14), Expect = 7.2
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 154 ccggcgtggacgtcagcg 171
|||||||||||| |||||
Sbjct: 2092 ccggcgtggacggcagcg 2075
>ISAav2
Length = 1031
Score = 28.2 bits (14), Expect = 7.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 183 ggtgagctgaccat 196
||||||||||||||
Sbjct: 124 ggtgagctgaccat 137
>IS1652
Length = 1060
Score = 28.2 bits (14), Expect = 7.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 25 acctggacatcagc 38
||||||||||||||
Sbjct: 824 acctggacatcagc 837
Score = 28.2 bits (14), Expect = 7.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 310 acctggacatcagc 323
||||||||||||||
Sbjct: 824 acctggacatcagc 837
>IS1649
Length = 1060
Score = 28.2 bits (14), Expect = 7.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 25 acctggacatcagc 38
||||||||||||||
Sbjct: 824 acctggacatcagc 837
Score = 28.2 bits (14), Expect = 7.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 310 acctggacatcagc 323
||||||||||||||
Sbjct: 824 acctggacatcagc 837
>IS1612
Length = 2532
Score = 28.2 bits (14), Expect = 7.2
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 154 ccggcgtggacgtcagcg 171
|||||||||||| |||||
Sbjct: 2088 ccggcgtggacggcagcg 2071
>IS1248B
Length = 830
Score = 28.2 bits (14), Expect = 7.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 196 tcgatgcggttgcg 209
||||||||||||||
Sbjct: 706 tcgatgcggttgcg 693
>IS1248A
Length = 832
Score = 28.2 bits (14), Expect = 7.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 196 tcgatgcggttgcg 209
||||||||||||||
Sbjct: 707 tcgatgcggttgcg 694
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_79_length_354_cov_1.02166_ID_5330
(354 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISPsy34 | IS66 | Pseudomonas syringae | 34 | 0.11 | |
| ISMtsp13 | IS256 | Methylobacterium sp. | 32 | 0.45 | |
| ISCARN21 | IS630 | Metagenomic data from CARNOULES | 32 | 0.45 | |
| ISSpu18 | IS481 | Shewanella putrefaciens | 32 | 0.45 | |
| ISBj11 | IS21 | Bradyrhizobium japonicum | 30 | 1.8 | |
| ISNamo2 | IS5 | ISH1 | Natronomonas moolapensis | 30 | 1.8 |
| ISPa36 | IS21 | Pseudomonas aeruginosa | 30 | 1.8 | |
| ISPst12 | IS5 | Pseudomonas stutzeri | 30 | 1.8 | |
| ISMaq5 | ISNCY | ISDol1 | Marinobacter aquaeolei | 30 | 1.8 |
| ISButh4 | IS5 | IS5 | Burkholderia thailandensis | 30 | 1.8 |
| ISPfr17 | IS481 | Propionibacterium freudenreichii | 30 | 1.8 | |
| ISBf3 | IS1182 | Bacteroides fragilis YCH46 plasmid pBFY46 | 30 | 1.8 | |
| ISMex2 | IS481 | Methylobacterium extorquens | 30 | 1.8 | |
| ISCARN43 | IS1595 | ISPna2 | Metagenomic data from CARNOULES | 30 | 1.8 |
| ISAli17 | IS5 | IS903 | Azospirillum lipoferum | 30 | 1.8 |
| ISAli16 | IS110 | Azospirillum lipoferum | 30 | 1.8 | |
| ISEc27 | IS3 | IS2 | Escherichia coli | 30 | 1.8 |
| ISGme1 | IS5 | IS5 | Geobacter metallireducens | 30 | 1.8 |
| ISNfa1 | IS481 | Nocardia farcinica | 30 | 1.8 | |
| ISRm12 | IS5 | IS5 | Sinorhizobium meliloti | 30 | 1.8 |
| IS2 | IS3 | IS2 | Escherichia coli | 30 | 1.8 |
| IS1121 | IS481 | - | Clavibacter michiganensis | 30 | 1.8 |
| ISAri1 | IS21 | Aeromonas rivuli | 28 | 7.0 | |
| ISAeme17 | IS21 | Aeromonas media | 28 | 7.0 | |
| ISXci1 | IS21 | Xanthomonas citri | 28 | 7.0 | |
| ISAeme3 | IS4 | ISH8 | Aeromonas media | 28 | 7.0 |
| ISRel12 | IS481 | Rhizobium etli | 28 | 7.0 | |
| ISNma17 | IS200/IS605 | IS1341 | Natrialba magadii | 28 | 7.0 |
| ISGsp5 | ISLre2 | Geobacillus sp. | 28 | 7.0 | |
| ISNamo14 | IS630 | Natronomonas moolapensis | 28 | 7.0 | |
| ISAzs36 | IS481 | Azospirillum sp. | 28 | 7.0 | |
| ISRel24 | IS66 | Rhizobium etli | 28 | 7.0 | |
| ISStsp5 | IS5 | ISL2 | Streptomyces sp. | 28 | 7.0 |
| ISBxe5 | IS5 | Burkholderia xenovorans | 28 | 7.0 | |
| ISBph2 | IS5 | Burkholderia phymatum | 28 | 7.0 | |
| ISApr13 | IS5 | Alpha proteobacterium | 28 | 7.0 | |
| ISSpal2 | IS5 | Sphingopyxis alaskensis | 28 | 7.0 | |
| ISRxy1 | IS1182 | Rubrobacter xylanophilus | 28 | 7.0 | |
| ISAcp1 | IS5 | IS5 | Acidobacterium capsulatum | 28 | 7.0 |
| ISXca5 | IS5 | IS5 | Xanthomonas campestris | 28 | 7.0 |
| ISRhru3 | IS110 | IS1111 | Rhodospirillum rubrum | 28 | 7.0 |
| ISMtsp15 | IS481 | Methylobacterium sp. | 28 | 7.0 | |
| ISAzba1 | ISKra4 | ISAzba1 | Azospirillum brasilense | 28 | 7.0 |
| ISMtsp8 | IS21 | Methylobacterium sp. | 28 | 7.0 | |
| ISCsc1 | IS66 | Clostridium scindens | 28 | 7.0 | |
| ISAar35 | IS481 | Arthrobacter arilaitensis | 28 | 7.0 | |
| ISMav7 | IS1380 | Mycobacterium avium | 28 | 7.0 | |
| ISRgn2 | IS66 | Ruminococcus gnavus | 28 | 7.0 | |
| ISAcr3 | ISAs1 | Acidiphilium cryptum | 28 | 7.0 | |
| ISAzo35 | IS701 | Azoarcus sp. | 28 | 7.0 | |
| ISBj5_B | IS5 | IS5 | Bradyrhizobium japonicum | 28 | 7.0 |
| ISKrh3 | IS481 | Kocuria rhizophila | 28 | 7.0 | |
| ISSmu5 | IS982 | Streptococcus mutans | 28 | 7.0 | |
| ISXoo4 | IS5 | IS5 | Xanthomonas oryzae | 28 | 7.0 |
| ISRel3 | IS21 | Rhizobium etli | 28 | 7.0 | |
| ISKpn7 | IS21 | Klebsiella pneumoniae | 28 | 7.0 | |
| ISBad2 | IS3 | IS150 | Bifidobacterium adolescentis | 28 | 7.0 |
| ISRel1 | IS4 | IS4Sa | Rhizobium etli | 28 | 7.0 |
| ISGsp3 | ISLre2 | Geobacillus sp. | 28 | 7.0 | |
| ISPen1 | IS4 | IS4 | Pseudomonas entomophila | 28 | 7.0 |
| ISSod13 | IS481 | Shewanella oneidensis | 28 | 7.0 | |
| ISBcen13 | IS21 | Burkholderia cenocepacia | 28 | 7.0 | |
| ISXax1 | IS256 | Xanthomonas axonopodis | 28 | 7.0 | |
| ISLxx3 | IS21 | Leifsonia xyli | 28 | 7.0 | |
| ISPpa5 | IS66 | Paracoccus pantotrophus | 28 | 7.0 | |
| ISBlo10 | IS3 | Bifidobacterium longum | 28 | 7.0 | |
| ISRso19 | IS21 | - | Ralstonia solanacearum | 28 | 7.0 |
| IS408 | IS21 | - | Burkholderia cepacia | 28 | 7.0 |
| IS406 | IS256 | - | Burkholderia cepacia | 28 | 7.0 |
>ISPsy34
Length = 2041
Score = 34.2 bits (17), Expect = 0.11
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 221 cctcttcttcggcgtcg 237
|||||||||||||||||
Sbjct: 713 cctcttcttcggcgtcg 697
>ISMtsp13
Length = 1428
Score = 32.2 bits (16), Expect = 0.45
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 128 gcagctcgaccgtgcc 143
||||||||||||||||
Sbjct: 381 gcagctcgaccgtgcc 366
>ISCARN21
Length = 1249
Score = 32.2 bits (16), Expect = 0.45
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 206 acagcgcctgctcggc 221
||||||||||||||||
Sbjct: 237 acagcgcctgctcggc 252
>ISSpu18
Length = 1199
Score = 32.2 bits (16), Expect = 0.45
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 317 tgttgctgaaggtggc 332
||||||||||||||||
Sbjct: 238 tgttgctgaaggtggc 253
>ISBj11
Length = 2649
Score = 30.2 bits (15), Expect = 1.8
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 88 tcgatccgcttggcg 102
|||||||||||||||
Sbjct: 1086 tcgatccgcttggcg 1072
>ISNamo2
Length = 937
Score = 30.2 bits (15), Expect = 1.8
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 78 gagaccgtcttcgatccgc 96
|||| ||||||||||||||
Sbjct: 755 gagatcgtcttcgatccgc 737
>ISPa36
Length = 2468
Score = 30.2 bits (15), Expect = 1.8
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 94 cgcttggcgatctcg 108
|||||||||||||||
Sbjct: 187 cgcttggcgatctcg 173
>ISPst12
Length = 1331
Score = 30.2 bits (15), Expect = 1.8
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 85 tcttcgatccgcttg 99
|||||||||||||||
Sbjct: 1013 tcttcgatccgcttg 999
>ISMaq5
Length = 1677
Score = 30.2 bits (15), Expect = 1.8
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 264 ggacatcagcaggtc 278
|||||||||||||||
Sbjct: 810 ggacatcagcaggtc 824
>ISButh4
Length = 1483
Score = 30.2 bits (15), Expect = 1.8
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 49 caagcggagattgcc 63
|||||||||||||||
Sbjct: 1113 caagcggagattgcc 1127
>ISPfr17
Length = 1092
Score = 30.2 bits (15), Expect = 1.8
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 1 cgctcgaccttgccg 15
|||||||||||||||
Sbjct: 919 cgctcgaccttgccg 905
>ISBf3
Length = 1845
Score = 30.2 bits (15), Expect = 1.8
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 160 atgcgcaccgggtcggtcg 178
||||| |||||||||||||
Sbjct: 215 atgcggaccgggtcggtcg 197
>ISMex2
Length = 1031
Score = 30.2 bits (15), Expect = 1.8
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 1 cgctcgaccttgccg 15
|||||||||||||||
Sbjct: 846 cgctcgaccttgccg 832
>ISCARN43
Length = 1086
Score = 30.2 bits (15), Expect = 1.8
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 292 gcctcgtcaaagacgcgga 310
||||||||||||| |||||
Sbjct: 960 gcctcgtcaaagaagcgga 942
>ISAli17
Length = 1109
Score = 30.2 bits (15), Expect = 1.8
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 209 gcgcctgctcggcct 223
|||||||||||||||
Sbjct: 361 gcgcctgctcggcct 375
>ISAli16
Length = 1153
Score = 30.2 bits (15), Expect = 1.8
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 90 gatccgcttggcgatctcg 108
|||| ||||||||||||||
Sbjct: 739 gatctgcttggcgatctcg 721
>ISEc27
Length = 1321
Score = 30.2 bits (15), Expect = 1.8
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 207 cagcgcctgctcggc 221
|||||||||||||||
Sbjct: 336 cagcgcctgctcggc 350
>ISGme1
Length = 1341
Score = 30.2 bits (15), Expect = 1.8
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 85 tcttcgatccgcttg 99
|||||||||||||||
Sbjct: 1030 tcttcgatccgcttg 1016
>ISNfa1
Length = 1112
Score = 30.2 bits (15), Expect = 1.8
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 1 cgctcgaccttgccg 15
|||||||||||||||
Sbjct: 927 cgctcgaccttgccg 913
>ISRm12
Length = 1481
Score = 30.2 bits (15), Expect = 1.8
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 4 tcgaccttgccggccatct 22
|||||||||||||| ||||
Sbjct: 823 tcgaccttgccggcgatct 805
>IS2
Length = 1331
Score = 30.2 bits (15), Expect = 1.8
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 207 cagcgcctgctcggc 221
|||||||||||||||
Sbjct: 341 cagcgcctgctcggc 355
>IS1121
Length = 1068
Score = 30.2 bits (15), Expect = 1.8
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 1 cgctcgaccttgccg 15
|||||||||||||||
Sbjct: 896 cgctcgaccttgccg 882
>ISAri1
Length = 1942
Score = 28.2 bits (14), Expect = 7.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 1 cgctcgaccttgcc 14
||||||||||||||
Sbjct: 784 cgctcgaccttgcc 771
>ISAeme17
Length = 1941
Score = 28.2 bits (14), Expect = 7.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 1 cgctcgaccttgcc 14
||||||||||||||
Sbjct: 784 cgctcgaccttgcc 771
>ISXci1
Length = 2013
Score = 28.2 bits (14), Expect = 7.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 1 cgctcgaccttgcc 14
||||||||||||||
Sbjct: 790 cgctcgaccttgcc 777
>ISAeme3
Length = 1384
Score = 28.2 bits (14), Expect = 7.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 3 ctcgaccttgccgg 16
||||||||||||||
Sbjct: 897 ctcgaccttgccgg 884
>ISRel12
Length = 1002
Score = 28.2 bits (14), Expect = 7.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 218 cggcctcttcttcg 231
||||||||||||||
Sbjct: 267 cggcctcttcttcg 254
>ISNma17
Length = 1585
Score = 28.2 bits (14), Expect = 7.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 227 cttcggcgtcgtcg 240
||||||||||||||
Sbjct: 722 cttcggcgtcgtcg 709
>ISGsp5
Length = 1706
Score = 28.2 bits (14), Expect = 7.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 87 ttcgatccgcttgg 100
||||||||||||||
Sbjct: 1426 ttcgatccgcttgg 1413
>ISNamo14
Length = 1067
Score = 28.2 bits (14), Expect = 7.0
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 82 ccgtcttcgatccgcttg 99
||||||||||| ||||||
Sbjct: 1003 ccgtcttcgatgcgcttg 1020
>ISAzs36
Length = 2622
Score = 28.2 bits (14), Expect = 7.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 1 cgctcgaccttgcc 14
||||||||||||||
Sbjct: 871 cgctcgaccttgcc 858
>ISRel24
Length = 2837
Score = 28.2 bits (14), Expect = 7.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 96 cttggcgatctcga 109
||||||||||||||
Sbjct: 1032 cttggcgatctcga 1019
>ISStsp5
Length = 885
Score = 28.2 bits (14), Expect = 7.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 112 tcaccctcgcgggt 125
||||||||||||||
Sbjct: 210 tcaccctcgcgggt 197
>ISBxe5
Length = 1335
Score = 28.2 bits (14), Expect = 7.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 271 agcaggtcttcggc 284
||||||||||||||
Sbjct: 1051 agcaggtcttcggc 1064
>ISBph2
Length = 1335
Score = 28.2 bits (14), Expect = 7.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 146 tttcgcgcatgtac 159
||||||||||||||
Sbjct: 223 tttcgcgcatgtac 236
>ISApr13
Length = 1556
Score = 28.2 bits (14), Expect = 7.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 86 cttcgatccgcttg 99
||||||||||||||
Sbjct: 1035 cttcgatccgcttg 1022
>ISSpal2
Length = 1314
Score = 28.2 bits (14), Expect = 7.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 85 tcttcgatccgctt 98
||||||||||||||
Sbjct: 1037 tcttcgatccgctt 1024
>ISRxy1
Length = 1790
Score = 28.2 bits (14), Expect = 7.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 319 ttgctgaaggtggc 332
||||||||||||||
Sbjct: 749 ttgctgaaggtggc 762
>ISAcp1
Length = 1483
Score = 28.2 bits (14), Expect = 7.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 218 cggcctcttcttcg 231
||||||||||||||
Sbjct: 1188 cggcctcttcttcg 1175
>ISXca5
Length = 1514
Score = 28.2 bits (14), Expect = 7.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 205 gacagcgcctgctc 218
||||||||||||||
Sbjct: 259 gacagcgcctgctc 246
>ISRhru3
Length = 1382
Score = 28.2 bits (14), Expect = 7.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 293 cctcgtcaaagacg 306
||||||||||||||
Sbjct: 836 cctcgtcaaagacg 849
>ISMtsp15
Length = 1122
Score = 28.2 bits (14), Expect = 7.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 1 cgctcgaccttgcc 14
||||||||||||||
Sbjct: 837 cgctcgaccttgcc 824
>ISAzba1
Length = 1465
Score = 28.2 bits (14), Expect = 7.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 40 gtcgtcgggcaagc 53
||||||||||||||
Sbjct: 1183 gtcgtcgggcaagc 1196
>ISMtsp8
Length = 2371
Score = 28.2 bits (14), Expect = 7.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 1 cgctcgaccttgcc 14
||||||||||||||
Sbjct: 860 cgctcgaccttgcc 847
>ISCsc1
Length = 2744
Score = 28.2 bits (14), Expect = 7.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 16 gccatctcaaccat 29
||||||||||||||
Sbjct: 2531 gccatctcaaccat 2518
>ISAar35
Length = 1072
Score = 28.2 bits (14), Expect = 7.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 1 cgctcgaccttgcc 14
||||||||||||||
Sbjct: 899 cgctcgaccttgcc 886
>ISMav7
Length = 1691
Score = 28.2 bits (14), Expect = 7.0
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 88 tcgatccgcttggcgatc 105
|||||||||||| |||||
Sbjct: 441 tcgatccgcttgtcgatc 424
>ISRgn2
Length = 2745
Score = 28.2 bits (14), Expect = 7.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 16 gccatctcaaccat 29
||||||||||||||
Sbjct: 2531 gccatctcaaccat 2518
>ISAcr3
Length = 1232
Score = 28.2 bits (14), Expect = 7.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 2 gctcgaccttgccg 15
||||||||||||||
Sbjct: 159 gctcgaccttgccg 146
>ISAzo35
Length = 1451
Score = 28.2 bits (14), Expect = 7.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 234 gtcgtcgtcgccag 247
||||||||||||||
Sbjct: 1387 gtcgtcgtcgccag 1374
>ISBj5_B
Length = 1524
Score = 28.2 bits (14), Expect = 7.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 4 tcgaccttgccggc 17
||||||||||||||
Sbjct: 279 tcgaccttgccggc 266
>ISKrh3
Length = 1113
Score = 28.2 bits (14), Expect = 7.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 201 ggaagacagcgcct 214
||||||||||||||
Sbjct: 144 ggaagacagcgcct 157
>ISSmu5
Length = 951
Score = 28.2 bits (14), Expect = 7.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 271 agcaggtcttcggc 284
||||||||||||||
Sbjct: 647 agcaggtcttcggc 634
>ISXoo4
Length = 1530
Score = 28.2 bits (14), Expect = 7.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 205 gacagcgcctgctc 218
||||||||||||||
Sbjct: 267 gacagcgcctgctc 254
>ISRel3
Length = 2308
Score = 28.2 bits (14), Expect = 7.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 1 cgctcgaccttgcc 14
||||||||||||||
Sbjct: 833 cgctcgaccttgcc 820
>ISKpn7
Length = 1956
Score = 28.2 bits (14), Expect = 7.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 1 cgctcgaccttgcc 14
||||||||||||||
Sbjct: 790 cgctcgaccttgcc 777
>ISBad2
Length = 1470
Score = 28.2 bits (14), Expect = 7.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 271 agcaggtcttcggc 284
||||||||||||||
Sbjct: 1250 agcaggtcttcggc 1263
>ISRel1
Length = 1273
Score = 28.2 bits (14), Expect = 7.0
Identities = 20/22 (90%)
Strand = Plus / Minus
Query: 87 ttcgatccgcttggcgatctcg 108
||||||||||| | ||||||||
Sbjct: 892 ttcgatccgctcgccgatctcg 871
>ISGsp3
Length = 1709
Score = 28.2 bits (14), Expect = 7.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 87 ttcgatccgcttgg 100
||||||||||||||
Sbjct: 1429 ttcgatccgcttgg 1416
>ISPen1
Length = 1514
Score = 28.2 bits (14), Expect = 7.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 307 cggatgcccatgtt 320
||||||||||||||
Sbjct: 1490 cggatgcccatgtt 1477
>ISSod13
Length = 1202
Score = 28.2 bits (14), Expect = 7.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 2 gctcgaccttgccg 15
||||||||||||||
Sbjct: 838 gctcgaccttgccg 825
>ISBcen13
Length = 1957
Score = 28.2 bits (14), Expect = 7.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 1 cgctcgaccttgcc 14
||||||||||||||
Sbjct: 793 cgctcgaccttgcc 780
>ISXax1
Length = 1329
Score = 28.2 bits (14), Expect = 7.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 211 gcctgctcggcctc 224
||||||||||||||
Sbjct: 962 gcctgctcggcctc 949
>ISLxx3
Length = 2637
Score = 28.2 bits (14), Expect = 7.0
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 224 cttcttcggcgtcgtcgt 241
||||||||||| ||||||
Sbjct: 358 cttcttcggcgacgtcgt 341
>ISPpa5
Length = 2829
Score = 28.2 bits (14), Expect = 7.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 271 agcaggtcttcggc 284
||||||||||||||
Sbjct: 1044 agcaggtcttcggc 1057
>ISBlo10
Length = 1339
Score = 28.2 bits (14), Expect = 7.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 239 cgtcgccagacgag 252
||||||||||||||
Sbjct: 1151 cgtcgccagacgag 1138
>ISRso19
Length = 1956
Score = 28.2 bits (14), Expect = 7.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 1 cgctcgaccttgcc 14
||||||||||||||
Sbjct: 778 cgctcgaccttgcc 765
>IS408
Length = 2798
Score = 28.2 bits (14), Expect = 7.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 232 gcgtcgtcgtcgcc 245
||||||||||||||
Sbjct: 505 gcgtcgtcgtcgcc 492
>IS406
Length = 1367
Score = 28.2 bits (14), Expect = 7.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 207 cagcgcctgctcgg 220
||||||||||||||
Sbjct: 516 cagcgcctgctcgg 529
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_80_length_352_cov_0.796364_ID_5332
(352 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISThsp1 | IS1182 | Thiomonas sp. | 36 | 0.029 | |
| ISUnCu19 | ISKra4 | ISAzba1 | Uncultured bacterium | 32 | 0.45 |
| ISUnCu14 | IS66 | Uncultured bacterium | 32 | 0.45 | |
| ISMex22 | Tn3 | Methylobacterium extorquens | 32 | 0.45 | |
| ISCARN39 | IS630 | Metagenomic data from CARNOULES | 32 | 0.45 | |
| ISMsm3 | IS1380 | Mycobacterium smegmatis | 32 | 0.45 | |
| ISPpu22 | IS3 | IS51 | Pseudomonas putida | 32 | 0.45 |
| ISBmu3 | IS21 | Burkholderia multivorans | 32 | 0.45 | |
| IS1648 | IS5 | IS427 | Streptomyces coelicolor | 32 | 0.45 |
| ISTha3 | IS91 | Thauera sp. | 30 | 1.8 | |
| ISHarch8 | IS200/IS605 | IS1341 | Halophilic archaeon | 30 | 1.8 |
| ISHli13 | IS200/IS605 | IS1341 | Halohasta litchfieldiae | 30 | 1.8 |
| ISSiac4 | ISKra4 | ISKra4 | Singulisphaera acidiphila | 30 | 1.8 |
| ISTdr1 | IS256 | Thiorhodococcus drewsii | 30 | 1.8 | |
| ISPa43 | Tn3 | Pseudomonas aeruginosa | 30 | 1.8 | |
| ISMra6 | IS5 | IS427 | Methylobacterium radiotolerans | 30 | 1.8 |
| ISGeob1 | IS5 | ISL2 | Geodermatophilus obscurus | 30 | 1.8 |
| ISRce2 | IS1182 | Rhodospirillum centenum | 30 | 1.8 | |
| ISVsp3 | IS66 | Verrucomicrobium spinosum | 30 | 1.8 | |
| ISFsp13 | ISAzo13 | Frankia sp. | 30 | 1.8 | |
| ISPfr21 | IS481 | Propionibacterium freudenreichii | 30 | 1.8 | |
| ISArsp6 | Tn3 | Arthrobacter sp. | 30 | 1.8 | |
| ISAnsp3 | IS66 | Anaeromyxobacter sp. | 30 | 1.8 | |
| IS1553 | IS256 | Mycobacterium tuberculosis | 30 | 1.8 | |
| ISGNB1-1 | IS5 | IS903 | Uncultured bacterium | 30 | 1.8 |
| ISOgr3 | IS5 | IS903 | Oceanicola granulosus | 30 | 1.8 |
| ISPst3 | IS21 | Pseudomonas stutzeri | 30 | 1.8 | |
| ISAzvi11 | IS481 | Azotobacter vinelandii | 30 | 1.8 | |
| ISGbe2 | IS3 | IS2 | Granulibacter bethesdensis | 30 | 1.8 |
| ISPsy14 | IS21 | Pseudomonas syringae | 30 | 1.8 | |
| ISRso1 | IS5 | - | Ralstonia solanacearum | 30 | 1.8 |
| ISPal1 | IS5 | IS427 | Pseudomonas alcaligenes | 30 | 1.8 |
| ISBli2 | IS256 | - | Brevibacterium linens | 30 | 1.8 |
| IS1512 | IS256 | - | Mycobacterium gordonae | 30 | 1.8 |
| ISRel26 | ISNCY | IS1202 | Rhizobium etli | 28 | 7.0 |
| ISNin1 | IS200/IS605 | IS605 | Natronolimnobius innermongolicus | 28 | 7.0 |
| ISNhu1 | IS200/IS605 | IS605 | Natrialba hulunbeirensis | 28 | 7.0 |
| ISHti1 | IS200/IS605 | IS605 | Halorhabdus tiamatea | 28 | 7.0 |
| ISHvo24 | IS200/IS605 | IS1341 | Haloferax volcanii | 28 | 7.0 |
| ISFK1 | IS21 | Bradyrhizobium japonicum | 28 | 7.0 | |
| ISIde1 | ISL3 | Ideonella dechloratans | 28 | 7.0 | |
| ISFsp17 | ISKra4 | ISKra4 | Frankia sp. | 28 | 7.0 |
| ISHme1 | IS6 | Haloferax mediterranei | 28 | 7.0 | |
| ISNamo6 | ISH3 | Natronomonas moolapensis | 28 | 7.0 | |
| ISHla8 | ISH3 | Halorubrum lacusprofundi | 28 | 7.0 | |
| ISHala2 | ISH6 | Halobiforma lacisalsi | 28 | 7.0 | |
| ISMlu11 | IS256 | Micrococcus luteus | 28 | 7.0 | |
| ISMfu1 | ISAzo13 | Myxococcus fulvus | 28 | 7.0 | |
| ISAzs36 | IS481 | Azospirillum sp. | 28 | 7.0 | |
| ISRel24 | IS66 | Rhizobium etli | 28 | 7.0 | |
| ISRel8 | IS66 | Rhizobium etli | 28 | 7.0 | |
| ISPpa8 | IS5 | IS903 | Paracoccus pantotrophus | 28 | 7.0 |
| ISHwa13 | ISH3 | Haloquadratum walsbyi | 28 | 7.0 | |
| ISRpa8 | IS5 | IS5 | Rhodopseudomonas palustris | 28 | 7.0 |
| ISMra3 | IS256 | Methylobacterium radiotolerans | 28 | 7.0 | |
| ISMno14 | IS110 | IS1111 | Methylobacterium nodulans | 28 | 7.0 |
| ISAar30 | ISL3 | Arthrobacter arilaitensis | 28 | 7.0 | |
| ISMav8 | IS1380 | Mycobacterium avium | 28 | 7.0 | |
| ISMsm11 | IS1380 | Mycobacterium smegmatis | 28 | 7.0 | |
| ISBfun3 | IS1182 | Burkholderia fungorum | 28 | 7.0 | |
| ISMdi14 | IS110 | IS1111 | Methylobacterium dichloromethanicum | 28 | 7.0 |
| ISMdi24 | IS5 | IS427 | Methylobacterium dichloromethanicum | 28 | 7.0 |
| ISMdi2 | ISL3 | Methylobacterium dichloromethanicum | 28 | 7.0 | |
| ISStag2 | IS481 | Stappia aggregata | 28 | 7.0 | |
| ISStpr1 | IS481 | Streptomyces pristinaespiralis | 28 | 7.0 | |
| ISGdi16 | IS1182 | Gluconacetobacter diazotrophicus | 28 | 7.0 | |
| ISMno2 | IS66 | ISBst12 | Methylobacterium nodulans | 28 | 7.0 |
| ISHne4 | IS110 | Hyphomonas neptunium | 28 | 7.0 | |
| ISSpo9 | IS5 | IS903 | Silicibacter pomeroyi | 28 | 7.0 |
| ISRel2 | IS481 | Rhizobium etli | 28 | 7.0 | |
| ISVch5 | IS5 | IS5 | Vibrio cholerae | 28 | 7.0 |
| ISRpa2 | IS3 | IS407 | Rhodopseudomonas palustris | 28 | 7.0 |
| ISRso20 | IS3 | IS3 | Ralstonia solanacearum | 28 | 7.0 |
| IS1663 | IS110 | Bordetella pertussis | 28 | 7.0 | |
| ISPa10 | IS5 | IS5 | Pseudomonas aeruginosa | 28 | 7.0 |
| ISAzvi2 | IS110 | IS1111 | Azotobacter vinelandii | 28 | 7.0 |
| ISGsu7 | IS3 | Geobacter sulfurreducens | 28 | 7.0 | |
| ISHla10 | ISH6 | Halorubrum lacusprofundi | 28 | 7.0 | |
| ISRm12 | IS5 | IS5 | Sinorhizobium meliloti | 28 | 7.0 |
| IS666 | IS256 | - | Mycobacterium avium | 28 | 7.0 |
| IS493 | IS5 | ISL2 | Streptomyces lividans | 28 | 7.0 |
| IS219 | IS1380 | - | Mycobacterium fortuitum | 28 | 7.0 |
| IS1357 | IS701 | - | Methylobacterium dichloromethanicum | 28 | 7.0 |
>ISThsp1
Length = 1539
Score = 36.2 bits (18), Expect = 0.029
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 103 tgcgcctgccgcgcgagatggg 124
|||||||| |||||||||||||
Sbjct: 436 tgcgcctggcgcgcgagatggg 457
Score = 30.2 bits (15), Expect = 1.8
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 278 cgccgccggcgcgct 292
|||||||||||||||
Sbjct: 894 cgccgccggcgcgct 880
>ISUnCu19
Length = 1461
Score = 32.2 bits (16), Expect = 0.45
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 87 cccatcctcaaggcgc 102
||||||||||||||||
Sbjct: 206 cccatcctcaaggcgc 191
>ISUnCu14
Length = 2442
Score = 32.2 bits (16), Expect = 0.45
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 241 gcgagcgcctcgccca 256
||||||||||||||||
Sbjct: 2122 gcgagcgcctcgccca 2107
>ISMex22
Length = 3864
Score = 32.2 bits (16), Expect = 0.45
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 92 cctcaaggcgctgcgc 107
||||||||||||||||
Sbjct: 539 cctcaaggcgctgcgc 524
>ISCARN39
Length = 1106
Score = 32.2 bits (16), Expect = 0.45
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 91 tcctcaaggcgctgcg 106
||||||||||||||||
Sbjct: 761 tcctcaaggcgctgcg 776
>ISMsm3
Length = 1695
Score = 32.2 bits (16), Expect = 0.45
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 278 cgccgccggcgcgctggcgc 297
||||||| ||||||||||||
Sbjct: 492 cgccgcccgcgcgctggcgc 473
>ISPpu22
Length = 1232
Score = 32.2 bits (16), Expect = 0.45
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 108 ctgccgcgcgagatgg 123
||||||||||||||||
Sbjct: 698 ctgccgcgcgagatgg 683
>ISBmu3
Length = 2697
Score = 32.2 bits (16), Expect = 0.45
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 233 ccgcccgcgcgagcgc 248
||||||||||||||||
Sbjct: 411 ccgcccgcgcgagcgc 426
Score = 28.2 bits (14), Expect = 7.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 47 cgagcgcttcagcg 60
||||||||||||||
Sbjct: 688 cgagcgcttcagcg 675
>IS1648
Length = 969
Score = 32.2 bits (16), Expect = 0.45
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 308 cgacgccgacctcgcc 323
||||||||||||||||
Sbjct: 312 cgacgccgacctcgcc 327
>ISTha3
Length = 2424
Score = 30.2 bits (15), Expect = 1.8
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 128 caccgacgccgccca 142
|||||||||||||||
Sbjct: 1730 caccgacgccgccca 1716
>ISHarch8
Length = 1435
Score = 30.2 bits (15), Expect = 1.8
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 85 gccccatcctcaagg 99
|||||||||||||||
Sbjct: 19 gccccatcctcaagg 33
>ISHli13
Length = 1586
Score = 30.2 bits (15), Expect = 1.8
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 85 gccccatcctcaagg 99
|||||||||||||||
Sbjct: 1528 gccccatcctcaagg 1542
>ISSiac4
Length = 1519
Score = 30.2 bits (15), Expect = 1.8
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 125 catcaccgacgccgcccac 143
||||||||||| |||||||
Sbjct: 205 catcaccgacgacgcccac 223
>ISTdr1
Length = 1384
Score = 30.2 bits (15), Expect = 1.8
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 87 cccatcctcaaggcg 101
|||||||||||||||
Sbjct: 263 cccatcctcaaggcg 249
>ISPa43
Length = 19903
Score = 30.2 bits (15), Expect = 1.8
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 171 ctcgaccgcgccctg 185
|||||||||||||||
Sbjct: 9398 ctcgaccgcgccctg 9412
Score = 28.2 bits (14), Expect = 7.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 88 ccatcctcaaggcg 101
||||||||||||||
Sbjct: 9701 ccatcctcaaggcg 9714
>ISMra6
Length = 851
Score = 30.2 bits (15), Expect = 1.8
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 111 ccgcgcgagatgggc 125
|||||||||||||||
Sbjct: 202 ccgcgcgagatgggc 216
>ISGeob1
Length = 1020
Score = 30.2 bits (15), Expect = 1.8
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 94 tcaaggcgctgcgcc 108
|||||||||||||||
Sbjct: 884 tcaaggcgctgcgcc 898
>ISRce2
Length = 1528
Score = 30.2 bits (15), Expect = 1.8
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 327 cgcaccgacgcccac 341
|||||||||||||||
Sbjct: 1197 cgcaccgacgcccac 1211
>ISVsp3
Length = 2446
Score = 30.2 bits (15), Expect = 1.8
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 200 gctggtgcagatccg 214
|||||||||||||||
Sbjct: 1907 gctggtgcagatccg 1921
>ISFsp13
Length = 1724
Score = 30.2 bits (15), Expect = 1.8
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 311 cgccgacctcgcccg 325
|||||||||||||||
Sbjct: 948 cgccgacctcgcccg 962
>ISPfr21
Length = 2632
Score = 30.2 bits (15), Expect = 1.8
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 251 cgcccacagcatcgt 265
|||||||||||||||
Sbjct: 1467 cgcccacagcatcgt 1453
>ISArsp6
Length = 26712
Score = 30.2 bits (15), Expect = 1.8
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 181 ccctggcccgtggcc 195
|||||||||||||||
Sbjct: 22271 ccctggcccgtggcc 22285
>ISAnsp3
Length = 2518
Score = 30.2 bits (15), Expect = 1.8
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 266 ccagcgctgccacgc 280
|||||||||||||||
Sbjct: 2204 ccagcgctgccacgc 2190
>IS1553
Length = 1406
Score = 30.2 bits (15), Expect = 1.8
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 207 cagatccgcgacacc 221
|||||||||||||||
Sbjct: 543 cagatccgcgacacc 529
>ISGNB1-1
Length = 1047
Score = 30.2 bits (15), Expect = 1.8
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 62 cgcgcccatgctgcc 76
|||||||||||||||
Sbjct: 568 cgcgcccatgctgcc 582
>ISOgr3
Length = 1052
Score = 30.2 bits (15), Expect = 1.8
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 62 cgcgcccatgctgcc 76
|||||||||||||||
Sbjct: 581 cgcgcccatgctgcc 595
>ISPst3
Length = 2606
Score = 30.2 bits (15), Expect = 1.8
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 93 ctcaaggcgctgcgcctgc 111
||||||| |||||||||||
Sbjct: 1629 ctcaaggagctgcgcctgc 1647
>ISAzvi11
Length = 1221
Score = 30.2 bits (15), Expect = 1.8
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 197 caagctggtgcagat 211
|||||||||||||||
Sbjct: 1150 caagctggtgcagat 1164
>ISGbe2
Length = 1352
Score = 30.2 bits (15), Expect = 1.8
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 291 ctggcgctggtcaac 305
|||||||||||||||
Sbjct: 694 ctggcgctggtcaac 708
Score = 28.2 bits (14), Expect = 7.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 143 catgggcgtcgatg 156
||||||||||||||
Sbjct: 901 catgggcgtcgatg 888
>ISPsy14
Length = 2597
Score = 30.2 bits (15), Expect = 1.8
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 102 ctgcgcctgccgcgc 116
|||||||||||||||
Sbjct: 2134 ctgcgcctgccgcgc 2148
>ISRso1
Length = 884
Score = 30.2 bits (15), Expect = 1.8
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 308 cgacgccgacctcgc 322
|||||||||||||||
Sbjct: 180 cgacgccgacctcgc 166
>ISPal1
Length = 924
Score = 30.2 bits (15), Expect = 1.8
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 49 agcgcttcagcgtcg 63
|||||||||||||||
Sbjct: 663 agcgcttcagcgtcg 649
>ISBli2
Length = 1467
Score = 30.2 bits (15), Expect = 1.8
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 207 cagatccgcgacacc 221
|||||||||||||||
Sbjct: 546 cagatccgcgacacc 532
>IS1512
Length = 1314
Score = 30.2 bits (15), Expect = 1.8
Identities = 21/23 (91%)
Strand = Plus / Plus
Query: 292 tggcgctggtcaacggcgacgcc 314
|||||||||||| | ||||||||
Sbjct: 733 tggcgctggtcaccagcgacgcc 755
>ISRel26
Length = 1634
Score = 28.2 bits (14), Expect = 7.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 199 agctggtgcagatc 212
||||||||||||||
Sbjct: 506 agctggtgcagatc 519
>ISNin1
Length = 1902
Score = 28.2 bits (14), Expect = 7.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 312 gccgacctcgcccg 325
||||||||||||||
Sbjct: 290 gccgacctcgcccg 277
>ISNhu1
Length = 1902
Score = 28.2 bits (14), Expect = 7.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 312 gccgacctcgcccg 325
||||||||||||||
Sbjct: 290 gccgacctcgcccg 277
>ISHti1
Length = 2131
Score = 28.2 bits (14), Expect = 7.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 308 cgacgccgacctcg 321
||||||||||||||
Sbjct: 879 cgacgccgacctcg 892
>ISHvo24
Length = 1462
Score = 28.2 bits (14), Expect = 7.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 307 gcgacgccgacctc 320
||||||||||||||
Sbjct: 207 gcgacgccgacctc 220
>ISFK1
Length = 2592
Score = 28.2 bits (14), Expect = 7.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 239 gcgcgagcgcctcg 252
||||||||||||||
Sbjct: 2163 gcgcgagcgcctcg 2150
>ISIde1
Length = 1448
Score = 28.2 bits (14), Expect = 7.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 309 gacgccgacctcgc 322
||||||||||||||
Sbjct: 74 gacgccgacctcgc 87
>ISFsp17
Length = 1693
Score = 28.2 bits (14), Expect = 7.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 175 accgcgccctggcc 188
||||||||||||||
Sbjct: 206 accgcgccctggcc 193
>ISHme1
Length = 740
Score = 28.2 bits (14), Expect = 7.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 67 ccatgctgccggcc 80
||||||||||||||
Sbjct: 159 ccatgctgccggcc 172
>ISNamo6
Length = 1440
Score = 28.2 bits (14), Expect = 7.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 167 cgcgctcgaccgcg 180
||||||||||||||
Sbjct: 598 cgcgctcgaccgcg 585
>ISHla8
Length = 1460
Score = 28.2 bits (14), Expect = 7.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 167 cgcgctcgaccgcg 180
||||||||||||||
Sbjct: 597 cgcgctcgaccgcg 584
>ISHala2
Length = 1442
Score = 28.2 bits (14), Expect = 7.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 190 gtggcctcaagctg 203
||||||||||||||
Sbjct: 189 gtggcctcaagctg 176
>ISMlu11
Length = 1434
Score = 28.2 bits (14), Expect = 7.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 125 catcaccgacgccg 138
||||||||||||||
Sbjct: 537 catcaccgacgccg 550
>ISMfu1
Length = 1293
Score = 28.2 bits (14), Expect = 7.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 239 gcgcgagcgcctcg 252
||||||||||||||
Sbjct: 166 gcgcgagcgcctcg 153
>ISAzs36
Length = 2622
Score = 28.2 bits (14), Expect = 7.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 278 cgccgccggcgcgc 291
||||||||||||||
Sbjct: 455 cgccgccggcgcgc 442
>ISRel24
Length = 2837
Score = 28.2 bits (14), Expect = 7.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 237 ccgcgcgagcgcct 250
||||||||||||||
Sbjct: 1228 ccgcgcgagcgcct 1241
>ISRel8
Length = 3226
Score = 28.2 bits (14), Expect = 7.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 241 gcgagcgcctcgcc 254
||||||||||||||
Sbjct: 2123 gcgagcgcctcgcc 2110
>ISPpa8
Length = 1050
Score = 28.2 bits (14), Expect = 7.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 63 gcgcccatgctgcc 76
||||||||||||||
Sbjct: 580 gcgcccatgctgcc 593
>ISHwa13
Length = 1459
Score = 28.2 bits (14), Expect = 7.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 167 cgcgctcgaccgcg 180
||||||||||||||
Sbjct: 597 cgcgctcgaccgcg 584
>ISRpa8
Length = 1540
Score = 28.2 bits (14), Expect = 7.0
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 163 tcgccgcgctcgaccgcg 180
||||||||||| ||||||
Sbjct: 1465 tcgccgcgctctaccgcg 1482
>ISMra3
Length = 1398
Score = 28.2 bits (14), Expect = 7.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 224 gctcgacacccgcc 237
||||||||||||||
Sbjct: 1334 gctcgacacccgcc 1347
>ISMno14
Length = 1428
Score = 28.2 bits (14), Expect = 7.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 314 cgacctcgcccgac 327
||||||||||||||
Sbjct: 924 cgacctcgcccgac 911
>ISAar30
Length = 1435
Score = 28.2 bits (14), Expect = 7.0
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 233 ccgcccgcgcgagcgcct 250
||||| ||||||||||||
Sbjct: 1030 ccgccagcgcgagcgcct 1047
>ISMav8
Length = 2064
Score = 28.2 bits (14), Expect = 7.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 116 cgagatgggcatca 129
||||||||||||||
Sbjct: 244 cgagatgggcatca 231
>ISMsm11
Length = 1658
Score = 28.2 bits (14), Expect = 7.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 116 cgagatgggcatca 129
||||||||||||||
Sbjct: 177 cgagatgggcatca 164
>ISBfun3
Length = 1627
Score = 28.2 bits (14), Expect = 7.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 337 cccacggcctgcac 350
||||||||||||||
Sbjct: 936 cccacggcctgcac 923
>ISMdi14
Length = 1316
Score = 28.2 bits (14), Expect = 7.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 45 cccgagcgcttcag 58
||||||||||||||
Sbjct: 779 cccgagcgcttcag 792
>ISMdi24
Length = 849
Score = 28.2 bits (14), Expect = 7.0
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 165 gccgcgctcgaccgcgcc 182
|||||||||||| |||||
Sbjct: 338 gccgcgctcgacagcgcc 355
>ISMdi2
Length = 1689
Score = 28.2 bits (14), Expect = 7.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 169 cgctcgaccgcgcc 182
||||||||||||||
Sbjct: 811 cgctcgaccgcgcc 798
>ISStag2
Length = 1035
Score = 28.2 bits (14), Expect = 7.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 23 cgccgcgctcgcct 36
||||||||||||||
Sbjct: 683 cgccgcgctcgcct 696
>ISStpr1
Length = 1052
Score = 28.2 bits (14), Expect = 7.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 326 acgcaccgacgccc 339
||||||||||||||
Sbjct: 940 acgcaccgacgccc 953
>ISGdi16
Length = 1524
Score = 28.2 bits (14), Expect = 7.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 257 cagcatcgtccagc 270
||||||||||||||
Sbjct: 628 cagcatcgtccagc 615
>ISMno2
Length = 1419
Score = 28.2 bits (14), Expect = 7.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 21 cacgccgcgctcgc 34
||||||||||||||
Sbjct: 35 cacgccgcgctcgc 22
>ISHne4
Length = 1166
Score = 28.2 bits (14), Expect = 7.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 127 tcaccgacgccgcc 140
||||||||||||||
Sbjct: 509 tcaccgacgccgcc 522
>ISSpo9
Length = 1049
Score = 28.2 bits (14), Expect = 7.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 63 gcgcccatgctgcc 76
||||||||||||||
Sbjct: 579 gcgcccatgctgcc 592
>ISRel2
Length = 1047
Score = 28.2 bits (14), Expect = 7.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 167 cgcgctcgaccgcg 180
||||||||||||||
Sbjct: 741 cgcgctcgaccgcg 728
>ISVch5
Length = 1197
Score = 28.2 bits (14), Expect = 7.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 21 cacgccgcgctcgc 34
||||||||||||||
Sbjct: 471 cacgccgcgctcgc 458
>ISRpa2
Length = 1265
Score = 28.2 bits (14), Expect = 7.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 136 ccgcccacatgggc 149
||||||||||||||
Sbjct: 1198 ccgcccacatgggc 1211
>ISRso20
Length = 1287
Score = 28.2 bits (14), Expect = 7.0
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 124 gcatcaccgacgccgccc 141
|||||||||||| |||||
Sbjct: 490 gcatcaccgacgacgccc 507
>IS1663
Length = 1225
Score = 28.2 bits (14), Expect = 7.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 37 gggaccaccccgag 50
||||||||||||||
Sbjct: 934 gggaccaccccgag 921
>ISPa10
Length = 1193
Score = 28.2 bits (14), Expect = 7.0
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 141 cacatgggcgtcgatgcc 158
||||| ||||||||||||
Sbjct: 600 cacatcggcgtcgatgcc 617
>ISAzvi2
Length = 1396
Score = 28.2 bits (14), Expect = 7.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 293 ggcgctggtcaacg 306
||||||||||||||
Sbjct: 484 ggcgctggtcaacg 497
>ISGsu7
Length = 1351
Score = 28.2 bits (14), Expect = 7.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 151 tcgatgcccaactc 164
||||||||||||||
Sbjct: 229 tcgatgcccaactc 216
>ISHla10
Length = 1444
Score = 28.2 bits (14), Expect = 7.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 258 agcatcgtccagcg 271
||||||||||||||
Sbjct: 1013 agcatcgtccagcg 1026
>ISRm12
Length = 1481
Score = 28.2 bits (14), Expect = 7.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 125 catcaccgacgccg 138
||||||||||||||
Sbjct: 1169 catcaccgacgccg 1156
>IS666
Length = 1472
Score = 28.2 bits (14), Expect = 7.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 143 catgggcgtcgatg 156
||||||||||||||
Sbjct: 282 catgggcgtcgatg 269
>IS493
Length = 1643
Score = 28.2 bits (14), Expect = 7.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 226 tcgacacccgcccg 239
||||||||||||||
Sbjct: 311 tcgacacccgcccg 298
>IS219
Length = 1654
Score = 28.2 bits (14), Expect = 7.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 116 cgagatgggcatca 129
||||||||||||||
Sbjct: 177 cgagatgggcatca 164
>IS1357
Length = 1435
Score = 28.2 bits (14), Expect = 7.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 131 cgacgccgcccaca 144
||||||||||||||
Sbjct: 111 cgacgccgcccaca 98
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_81_length_349_cov_0.797794_ID_5334
(349 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISRpa6 | ISAs1 | Rhodopseudomonas palustris | 34 | 0.11 | |
| ISAmi1 | IS5 | ISL2 | Actinosynnema mirum | 32 | 0.44 |
| ISAzo27 | IS5 | IS5 | Azoarcus sp. | 32 | 0.44 |
| ISGdi7 | IS110 | IS1111 | Gluconacetobacter diazotrophicus | 32 | 0.44 |
| ISBcen7 | IS3 | IS3 | Burkholderia cenocepacia | 32 | 0.44 |
| ISXc4 | Tn3 | - | Xanthomonas campestris | 32 | 0.44 |
| ISBvi7 | IS3 | IS407 | Burkholderia vietnamiensis | 30 | 1.8 |
| ISStma17 | IS3 | IS51 | Stenotrophomonas maltophilia | 30 | 1.8 |
| ISMsm10 | IS1380 | Mycobacterium smegmatis | 30 | 1.8 | |
| ISAcma5 | IS5 | IS1031 | Acaryochloris marina | 30 | 1.8 |
| ISSen1 | IS3 | IS3 | Salmonella enterica | 30 | 1.8 |
| ISHar6 | IS110 | IS1111 | Herminiimonas arsenicoxydans | 30 | 1.8 |
| ISBlma5 | IS3 | IS407 | Blastopirellula marina | 30 | 1.8 |
| ISCc4 | IS110 | IS1111 | Caulobacter crescentus | 30 | 1.8 |
| ISPsy11 | IS3 | IS3 | Pseudomonas syringae | 30 | 1.8 |
| ISPpu9 | IS110 | Pseudomonas putida | 30 | 1.8 | |
| IS2404 | ISAs1 | - | Mycobacterium ulcerans | 30 | 1.8 |
| ISMdi15 | IS200/IS605 | IS1341 | Methylobacterium dichloromethanicum | 28 | 6.9 |
| ISHla4 | IS5 | ISH1 | Halorubrum lacusprofundi | 28 | 6.9 |
| ISCaa12 | IS481 | Candidatus Amoebophilus asiaticus | 28 | 6.9 | |
| ISShes11 | Tn3 | Shewanella sp. | 28 | 6.9 | |
| ISRssp12 | IS1182 | Roseovarius sp. | 28 | 6.9 | |
| ISBf5 | IS1182 | Bacteroides fragilis | 28 | 6.9 | |
| ISMdi24 | IS5 | IS427 | Methylobacterium dichloromethanicum | 28 | 6.9 |
| ISCARN24 | IS21 | Metagenomic data from CARNOULES | 28 | 6.9 | |
| ISAfe8 | IS200/IS605 | IS1341 | Acidithiobacillus ferrooxidans | 28 | 6.9 |
| ISSod25 | IS91 | Shewanella oneidensis | 28 | 6.9 | |
| ISSac1 | IS630 | Syntrophus aciditrophicus | 28 | 6.9 | |
| ISMma4 | IS1634 | Methanosarcina mazei | 28 | 6.9 | |
| ISMma3 | IS1634 | Methanosarcina mazei | 28 | 6.9 | |
| ISBmu2 | IS5 | IS5 | Burkholderia multivorans | 28 | 6.9 |
| ISRso18 | IS5 | IS5 | Ralstonia solanacearum | 28 | 6.9 |
| ISMt2 | IS21 | - | Mycobacterium tuberculosis | 28 | 6.9 |
>ISRpa6
Length = 1193
Score = 34.2 bits (17), Expect = 0.11
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 219 agcagcgcaagcagcttcaag 239
|||||||||||||||| ||||
Sbjct: 575 agcagcgcaagcagctgcaag 555
>ISAmi1
Length = 883
Score = 32.2 bits (16), Expect = 0.44
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 145 atcggtcgccatggcc 160
||||||||||||||||
Sbjct: 23 atcggtcgccatggcc 38
>ISAzo27
Length = 1164
Score = 32.2 bits (16), Expect = 0.44
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 89 gccgccaccgctgaaa 104
||||||||||||||||
Sbjct: 1085 gccgccaccgctgaaa 1070
>ISGdi7
Length = 1518
Score = 32.2 bits (16), Expect = 0.44
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 150 tcgccatggccacgat 165
||||||||||||||||
Sbjct: 1132 tcgccatggccacgat 1117
>ISBcen7
Length = 1312
Score = 32.2 bits (16), Expect = 0.44
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 212 acacccgagcagcgca 227
||||||||||||||||
Sbjct: 291 acacccgagcagcgca 306
>ISXc4
Length = 6938
Score = 32.2 bits (16), Expect = 0.44
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 210 tgacacccgagcagcg 225
||||||||||||||||
Sbjct: 2407 tgacacccgagcagcg 2422
>ISBvi7
Length = 1177
Score = 30.2 bits (15), Expect = 1.8
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 226 caagcagcttcaaga 240
|||||||||||||||
Sbjct: 198 caagcagcttcaaga 212
>ISStma17
Length = 1321
Score = 30.2 bits (15), Expect = 1.8
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 280 gcgcggcatgatgcgcggc 298
||||||| |||||||||||
Sbjct: 658 gcgcggcgtgatgcgcggc 676
>ISMsm10
Length = 1661
Score = 30.2 bits (15), Expect = 1.8
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 265 gcgcgagggcatggg 279
|||||||||||||||
Sbjct: 1357 gcgcgagggcatggg 1343
>ISAcma5
Length = 898
Score = 30.2 bits (15), Expect = 1.8
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 199 ttatgaggtgctgac 213
|||||||||||||||
Sbjct: 793 ttatgaggtgctgac 807
>ISSen1
Length = 1312
Score = 30.2 bits (15), Expect = 1.8
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 208 gctgacacccgagca 222
|||||||||||||||
Sbjct: 287 gctgacacccgagca 301
>ISHar6
Length = 1359
Score = 30.2 bits (15), Expect = 1.8
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 248 gcatggcggggcgacaagc 266
||||||||||||| |||||
Sbjct: 391 gcatggcggggcggcaagc 373
>ISBlma5
Length = 1296
Score = 30.2 bits (15), Expect = 1.8
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 226 caagcagcttcaagagaag 244
|||||||||||| ||||||
Sbjct: 380 caagcagcttcaggagaag 398
>ISCc4
Length = 1174
Score = 30.2 bits (15), Expect = 1.8
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 147 cggtcgccatggcca 161
|||||||||||||||
Sbjct: 1026 cggtcgccatggcca 1040
>ISPsy11
Length = 1313
Score = 30.2 bits (15), Expect = 1.8
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 211 gacacccgagcagcg 225
|||||||||||||||
Sbjct: 290 gacacccgagcagcg 304
>ISPpu9
Length = 2043
Score = 30.2 bits (15), Expect = 1.8
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 217 cgagcagcgcaagca 231
|||||||||||||||
Sbjct: 1379 cgagcagcgcaagca 1393
>IS2404
Length = 1279
Score = 30.2 bits (15), Expect = 1.8
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 131 ttgaccgagcagcaatcgg 149
||||||||||| |||||||
Sbjct: 513 ttgaccgagcaccaatcgg 495
>ISMdi15
Length = 1344
Score = 28.2 bits (14), Expect = 6.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 82 gggtgaagccgcca 95
||||||||||||||
Sbjct: 33 gggtgaagccgcca 46
>ISHla4
Length = 1804
Score = 28.2 bits (14), Expect = 6.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 311 gacgcttgatgtaa 324
||||||||||||||
Sbjct: 1370 gacgcttgatgtaa 1383
>ISCaa12
Length = 1209
Score = 28.2 bits (14), Expect = 6.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 227 aagcagcttcaaga 240
||||||||||||||
Sbjct: 524 aagcagcttcaaga 537
>ISShes11
Length = 7669
Score = 28.2 bits (14), Expect = 6.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 173 tcgcgcattgctgg 186
||||||||||||||
Sbjct: 292 tcgcgcattgctgg 279
>ISRssp12
Length = 1554
Score = 28.2 bits (14), Expect = 6.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 109 cgatgcagcgcgcg 122
||||||||||||||
Sbjct: 485 cgatgcagcgcgcg 472
>ISBf5
Length = 1830
Score = 28.2 bits (14), Expect = 6.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 240 agaagcgtgcatgg 253
||||||||||||||
Sbjct: 1176 agaagcgtgcatgg 1189
>ISMdi24
Length = 849
Score = 28.2 bits (14), Expect = 6.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 280 gcgcggcatgatgc 293
||||||||||||||
Sbjct: 651 gcgcggcatgatgc 638
>ISCARN24
Length = 2778
Score = 28.2 bits (14), Expect = 6.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 150 tcgccatggccacg 163
||||||||||||||
Sbjct: 740 tcgccatggccacg 753
>ISAfe8
Length = 1472
Score = 28.2 bits (14), Expect = 6.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 165 tgatgcagtcgcgc 178
||||||||||||||
Sbjct: 898 tgatgcagtcgcgc 885
>ISSod25
Length = 2314
Score = 28.2 bits (14), Expect = 6.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 132 tgaccgagcagcaa 145
||||||||||||||
Sbjct: 993 tgaccgagcagcaa 1006
>ISSac1
Length = 1217
Score = 28.2 bits (14), Expect = 6.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 123 tcaaggcattgacc 136
||||||||||||||
Sbjct: 1061 tcaaggcattgacc 1048
>ISMma4
Length = 1719
Score = 28.2 bits (14), Expect = 6.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 29 atggagaaaatggg 42
||||||||||||||
Sbjct: 1246 atggagaaaatggg 1259
>ISMma3
Length = 1719
Score = 28.2 bits (14), Expect = 6.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 29 atggagaaaatggg 42
||||||||||||||
Sbjct: 1246 atggagaaaatggg 1259
>ISBmu2
Length = 1210
Score = 28.2 bits (14), Expect = 6.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 259 cgacaagcgcgagg 272
||||||||||||||
Sbjct: 767 cgacaagcgcgagg 780
>ISRso18
Length = 1188
Score = 28.2 bits (14), Expect = 6.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 259 cgacaagcgcgagg 272
||||||||||||||
Sbjct: 457 cgacaagcgcgagg 444
>ISMt2
Length = 2645
Score = 28.2 bits (14), Expect = 6.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 243 agcgtgcatggcgg 256
||||||||||||||
Sbjct: 2337 agcgtgcatggcgg 2324
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_82_length_345_cov_0.813433_ID_5336
(345 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISThsp20 | IS5 | IS427 | Thiomonas sp. | 32 | 0.44 |
| ISCARN100 | IS1595 | ISSod11 | Metagenomic data from CARNOULES | 32 | 0.44 |
| ISRxy1 | IS1182 | Rubrobacter xylanophilus | 30 | 1.7 | |
| ISMpo9 | IS701 | Methylobacterium populi | 30 | 1.7 | |
| ISThsp6 | IS5 | IS427 | Thiomonas sp. | 30 | 1.7 |
| ISPsp2 | ISL3 | - | Pseudomonas sp. | 30 | 1.7 |
| IS1411 | ISL3 | - | Pseudomonas sp | 30 | 1.7 |
| ISShdy2 | IS66 | Shigella dysenteriae | 28 | 6.9 | |
| ISHmu8 | IS200/IS605 | IS1341 | Halomicrobium mukohataei | 28 | 6.9 |
| ISMyma10 | IS3 | IS51 | Mycobacterium marinum | 28 | 6.9 |
| ISVal1 | IS5 | IS903 | Vibrio alginolyticus | 28 | 6.9 |
| ISRel9 | IS110 | IS1111 | Rhizobium etli | 28 | 6.9 |
| ISMno32 | IS1182 | Methylobacterium nodulans | 28 | 6.9 | |
| ISMno11 | IS630 | Methylobacterium nodulans | 28 | 6.9 | |
| ISCARN22 | IS66 | Metagenomic data from CARNOULES | 28 | 6.9 | |
| ISGdi8 | IS256 | Gluconacetobacter diazotrophicus | 28 | 6.9 | |
| ISArch16 | ISAzo13 | Uncultured archaeon | 28 | 6.9 | |
| ISGur9 | IS21 | Geobacter uraniumreducens | 28 | 6.9 | |
| ISNwi1 | IS1595 | ISNwi1 | Nitrobacter winogradskyi | 28 | 6.9 |
| ISBmu11 | IS3 | IS150 | Burkholderia multivorans | 28 | 6.9 |
| ISCef4 | IS4 | IS4 | Corynebacterium efficiens | 28 | 6.9 |
| ISBlma2 | IS4 | IS4 | Blastopirellula marina | 28 | 6.9 |
| ISNmo1 | IS1595 | ISSod11 | Nitrococcus mobilis | 28 | 6.9 |
| ISMba5 | IS5 | IS427 | Methanosarcina barkeri | 28 | 6.9 |
| ISPa42 | Tn3 | Pseudomonas aeruginosa | 28 | 6.9 | |
| ISHaha7 | IS200/IS605 | IS1341 | Halobacillus halophilus | 28 | 6.9 |
| IS1326 | IS21 | - | Pseudomonas aeruginosa | 28 | 6.9 |
>ISThsp20
Length = 833
Score = 32.2 bits (16), Expect = 0.44
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 22 attgccaccccgcgct 37
||||||||||||||||
Sbjct: 404 attgccaccccgcgct 389
>ISCARN100
Length = 1111
Score = 32.2 bits (16), Expect = 0.44
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 163 gagtaaagctcggcgt 178
||||||||||||||||
Sbjct: 1055 gagtaaagctcggcgt 1040
>ISRxy1
Length = 1790
Score = 30.2 bits (15), Expect = 1.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 87 gcttcgctgcgggcg 101
|||||||||||||||
Sbjct: 802 gcttcgctgcgggcg 816
>ISMpo9
Length = 1413
Score = 30.2 bits (15), Expect = 1.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 96 cgggcgagcgcaaat 110
|||||||||||||||
Sbjct: 1004 cgggcgagcgcaaat 1018
>ISThsp6
Length = 843
Score = 30.2 bits (15), Expect = 1.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 22 attgccaccccgcgc 36
|||||||||||||||
Sbjct: 414 attgccaccccgcgc 400
>ISPsp2
Length = 1416
Score = 30.2 bits (15), Expect = 1.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 250 tggtcgttgtccgta 264
|||||||||||||||
Sbjct: 323 tggtcgttgtccgta 309
>IS1411
Length = 1419
Score = 30.2 bits (15), Expect = 1.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 250 tggtcgttgtccgta 264
|||||||||||||||
Sbjct: 324 tggtcgttgtccgta 310
>ISShdy2
Length = 2496
Score = 28.2 bits (14), Expect = 6.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 65 gaccgtgagaccgc 78
||||||||||||||
Sbjct: 1340 gaccgtgagaccgc 1353
>ISHmu8
Length = 1508
Score = 28.2 bits (14), Expect = 6.9
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 75 ccgcgtttgacggcttcg 92
|||| |||||||||||||
Sbjct: 480 ccgcttttgacggcttcg 463
>ISMyma10
Length = 1352
Score = 28.2 bits (14), Expect = 6.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 174 ggcgtggcgatcgc 187
||||||||||||||
Sbjct: 918 ggcgtggcgatcgc 905
>ISVal1
Length = 1054
Score = 28.2 bits (14), Expect = 6.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 193 gaattgccatgatg 206
||||||||||||||
Sbjct: 676 gaattgccatgatg 689
>ISRel9
Length = 1553
Score = 28.2 bits (14), Expect = 6.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 90 tcgctgcgggcgag 103
||||||||||||||
Sbjct: 853 tcgctgcgggcgag 840
>ISMno32
Length = 1538
Score = 28.2 bits (14), Expect = 6.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 92 gctgcgggcgagcg 105
||||||||||||||
Sbjct: 201 gctgcgggcgagcg 214
>ISMno11
Length = 1058
Score = 28.2 bits (14), Expect = 6.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 179 ggcgatcgcggcaa 192
||||||||||||||
Sbjct: 811 ggcgatcgcggcaa 824
>ISCARN22
Length = 2674
Score = 28.2 bits (14), Expect = 6.9
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 168 aagctcggcgtggcgatc 185
|||||||||||| |||||
Sbjct: 726 aagctcggcgtgtcgatc 743
>ISGdi8
Length = 1356
Score = 28.2 bits (14), Expect = 6.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 170 gctcggcgtggcga 183
||||||||||||||
Sbjct: 680 gctcggcgtggcga 693
>ISArch16
Length = 1312
Score = 28.2 bits (14), Expect = 6.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 20 gaattgccaccccg 33
||||||||||||||
Sbjct: 734 gaattgccaccccg 721
>ISGur9
Length = 2553
Score = 28.2 bits (14), Expect = 6.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 64 tgaccgtgagaccg 77
||||||||||||||
Sbjct: 627 tgaccgtgagaccg 640
>ISNwi1
Length = 2348
Score = 28.2 bits (14), Expect = 6.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 58 tcaccgtgaccgtg 71
||||||||||||||
Sbjct: 260 tcaccgtgaccgtg 273
>ISBmu11
Length = 1626
Score = 28.2 bits (14), Expect = 6.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 119 gagttcattcgcct 132
||||||||||||||
Sbjct: 677 gagttcattcgcct 664
>ISCef4
Length = 1451
Score = 28.2 bits (14), Expect = 6.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 176 cgtggcgatcgcgg 189
||||||||||||||
Sbjct: 560 cgtggcgatcgcgg 573
>ISBlma2
Length = 1439
Score = 28.2 bits (14), Expect = 6.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 186 gcggcaagaattgc 199
||||||||||||||
Sbjct: 186 gcggcaagaattgc 173
>ISNmo1
Length = 1114
Score = 28.2 bits (14), Expect = 6.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 165 gtaaagctcggcgt 178
||||||||||||||
Sbjct: 1056 gtaaagctcggcgt 1043
>ISMba5
Length = 872
Score = 28.2 bits (14), Expect = 6.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 182 gatcgcggcaagaa 195
||||||||||||||
Sbjct: 428 gatcgcggcaagaa 441
>ISPa42
Length = 16941
Score = 28.2 bits (14), Expect = 6.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 203 gatggccagggtga 216
||||||||||||||
Sbjct: 9474 gatggccagggtga 9487
>ISHaha7
Length = 1367
Score = 28.2 bits (14), Expect = 6.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 147 ttgtcttcaatcat 160
||||||||||||||
Sbjct: 246 ttgtcttcaatcat 259
>IS1326
Length = 2470
Score = 28.2 bits (14), Expect = 6.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 18 ctgaattgccaccc 31
||||||||||||||
Sbjct: 1324 ctgaattgccaccc 1337
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_83_length_342_cov_0.754717_ID_5338
(342 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISPfr20 | ISL3 | Propionibacterium freudenreichii | 34 | 0.11 | |
| IS1136 | IS200/IS605 | IS1341 | Saccharopolyspora erythraea | 30 | 1.7 |
| ISPna6 | IS701 | ISAba11 | Polaromonas naphthalenivorans | 28 | 6.8 |
| ISMfu1 | ISAzo13 | Myxococcus fulvus | 28 | 6.8 | |
| ISAzs25 | IS1380 | Azospirillum sp. | 28 | 6.8 | |
| ISArsp6 | Tn3 | Arthrobacter sp. | 28 | 6.8 | |
| ISAar46 | IS3 | IS3 | Arthrobacter arilaitensis | 28 | 6.8 |
| ISMsm10 | IS1380 | Mycobacterium smegmatis | 28 | 6.8 | |
| ISCur1 | IS1380 | Corynebacterium urealyticum | 28 | 6.8 | |
| IS679 | IS66 | Escherichia coli | 28 | 6.8 | |
| ISCro4 | IS110 | Citrobacter rodentium | 28 | 6.8 | |
| ISCro1 | IS66 | Citrobacter rodentium | 28 | 6.8 | |
| ISRm13 | IS5 | IS5 | Sinorhizobium meliloti | 28 | 6.8 |
| IS4 | IS4 | IS4 | Escherichia coli | 28 | 6.8 |
>ISPfr20
Length = 1505
Score = 34.2 bits (17), Expect = 0.11
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 260 ggccatcaacaacgtca 276
|||||||||||||||||
Sbjct: 1337 ggccatcaacaacgtca 1353
>IS1136
Length = 1402
Score = 30.2 bits (15), Expect = 1.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 175 gcgctttccgcctgc 189
|||||||||||||||
Sbjct: 463 gcgctttccgcctgc 477
>ISPna6
Length = 1124
Score = 28.2 bits (14), Expect = 6.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 103 ggctgcgcccttgc 116
||||||||||||||
Sbjct: 435 ggctgcgcccttgc 422
>ISMfu1
Length = 1293
Score = 28.2 bits (14), Expect = 6.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 107 gcgcccttgcgccg 120
||||||||||||||
Sbjct: 296 gcgcccttgcgccg 283
>ISAzs25
Length = 1614
Score = 28.2 bits (14), Expect = 6.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 180 ttccgcctgctggc 193
||||||||||||||
Sbjct: 322 ttccgcctgctggc 335
>ISArsp6
Length = 26712
Score = 28.2 bits (14), Expect = 6.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 253 tcccgctggccatc 266
||||||||||||||
Sbjct: 2237 tcccgctggccatc 2224
Score = 28.2 bits (14), Expect = 6.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 250 tgatcccgctggcc 263
||||||||||||||
Sbjct: 3940 tgatcccgctggcc 3927
>ISAar46
Length = 1526
Score = 28.2 bits (14), Expect = 6.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 225 gaatccccctggtt 238
||||||||||||||
Sbjct: 1043 gaatccccctggtt 1056
>ISMsm10
Length = 1661
Score = 28.2 bits (14), Expect = 6.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 103 ggctgcgcccttgc 116
||||||||||||||
Sbjct: 750 ggctgcgcccttgc 737
>ISCur1
Length = 1627
Score = 28.2 bits (14), Expect = 6.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 156 cagctggtgcagac 169
||||||||||||||
Sbjct: 1603 cagctggtgcagac 1590
>IS679
Length = 2704
Score = 28.2 bits (14), Expect = 6.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 163 tgcagaccatctgc 176
||||||||||||||
Sbjct: 1708 tgcagaccatctgc 1721
>ISCro4
Length = 1295
Score = 28.2 bits (14), Expect = 6.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 45 catctgctgtggct 58
||||||||||||||
Sbjct: 701 catctgctgtggct 714
>ISCro1
Length = 2699
Score = 28.2 bits (14), Expect = 6.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 163 tgcagaccatctgc 176
||||||||||||||
Sbjct: 1703 tgcagaccatctgc 1716
>ISRm13
Length = 1550
Score = 28.2 bits (14), Expect = 6.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 171 atctgcgctttccg 184
||||||||||||||
Sbjct: 43 atctgcgctttccg 56
>IS4
Length = 1426
Score = 28.2 bits (14), Expect = 6.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 37 tggcggaacatctg 50
||||||||||||||
Sbjct: 1163 tggcggaacatctg 1176
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_84_length_338_cov_0.83908_ID_5340
(338 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| TnXo19 | Tn3 | Xanthomonas oryzae | 36 | 0.028 | |
| ISStma11 | ISL3 | Stenotrophomonas maltophilia | 36 | 0.028 | |
| ISCARN101 | IS3 | IS3 | Metagenomic data from CARNOULES | 34 | 0.11 |
| ISRhsp8 | IS5 | IS903 | Rhodobacter sphaeroides | 30 | 1.7 |
| ISVsp13 | IS3 | IS150 | Verrucomicrobium spinosum | 30 | 1.7 |
| ISHha2 | IS5 | Halorhodospira halophila | 30 | 1.7 | |
| ISAcma27 | IS630 | Acaryochloris marina | 30 | 1.7 | |
| ISCARN27 | IS256 | Metagenomic data from CARNOULES | 30 | 1.7 | |
| ISDds6 | IS701 | Deinococcus deserti | 30 | 1.7 | |
| ISRhosp8 | IS110 | Rhodococcus sp. | 30 | 1.7 | |
| ISBlo1 | IS21 | Bifidobacterium longum | 30 | 1.7 | |
| IS30H | IS30 | - | Escherichia hermannii | 30 | 1.7 |
| TnAs3 | Tn3 | Aeromonas salmonicida | 28 | 6.7 | |
| ISNch1 | IS200/IS605 | IS1341 | Natrialba chahannaoensis | 28 | 6.7 |
| TnAs1 | Tn3 | Aeromonas salmonicida | 28 | 6.7 | |
| ISAs25 | IS1634 | Aeromonas salmonicida | 28 | 6.7 | |
| ISPsp10 | IS5 | IS427 | Pseudomonas sp. | 28 | 6.7 |
| ISPa43 | Tn3 | Pseudomonas aeruginosa | 28 | 6.7 | |
| ISEc36 | IS3 | IS2 | Escherichia coli | 28 | 6.7 |
| ISXo9 | IS5 | IS5 | Xanthomonas oryzae | 28 | 6.7 |
| ISAzo29 | ISAs1 | Azoarcus sp. | 28 | 6.7 | |
| ISCARN45 | IS256 | Metagenomic data from CARNOULES | 28 | 6.7 | |
| ISMysp6 | IS481 | Mycobacterium sp. | 28 | 6.7 | |
| ISAfe2 | IS256 | Acidithiobacillus ferrooxidans | 28 | 6.7 | |
| ISShes12 | IS1634 | Shewanella sp. | 28 | 6.7 | |
| ISXoo4 | IS5 | IS5 | Xanthomonas oryzae | 28 | 6.7 |
| ISEca11 | IS3 | IS407 | Erwinia carotovora | 28 | 6.7 |
| ISEc27 | IS3 | IS2 | Escherichia coli | 28 | 6.7 |
| ISSpu3 | ISAs1 | Shewanella putrefaciens | 28 | 6.7 | |
| ISBcen28 | IS21 | Burkholderia cenocepacia | 28 | 6.7 | |
| ISXo17 | IS3 | IS407 | Xanthomonas oryzae | 28 | 6.7 |
| ISOba1 | IS3 | IS407 | Oceanicola batsensis | 28 | 6.7 |
| ISAtu3 | IS3 | IS150 | Agrobacterium tumefaciens | 28 | 6.7 |
| ISMca2 | IS3 | IS3 | Methylococcus capsulatus | 28 | 6.7 |
| ISRso1 | IS5 | - | Ralstonia solanacearum | 28 | 6.7 |
| IS1396 | ISL3 | - | Serratia marcescens | 28 | 6.7 |
>TnXo19
Length = 18767
Score = 36.2 bits (18), Expect = 0.028
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 63 tggttctcgggctcctcgatca 84
|||||||| |||||||||||||
Sbjct: 12939 tggttctccggctcctcgatca 12918
>ISStma11
Length = 4621
Score = 36.2 bits (18), Expect = 0.028
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 5 gtcgctggccagcgcttc 22
||||||||||||||||||
Sbjct: 2452 gtcgctggccagcgcttc 2469
Score = 30.2 bits (15), Expect = 1.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 270 agcttgccgatgcgc 284
|||||||||||||||
Sbjct: 3053 agcttgccgatgcgc 3039
>ISCARN101
Length = 1672
Score = 34.2 bits (17), Expect = 0.11
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 13 ccagcgcttccatcctg 29
|||||||||||||||||
Sbjct: 1247 ccagcgcttccatcctg 1231
>ISRhsp8
Length = 1054
Score = 30.2 bits (15), Expect = 1.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 210 gacgtgcgcgcggtc 224
|||||||||||||||
Sbjct: 541 gacgtgcgcgcggtc 555
>ISVsp13
Length = 1503
Score = 30.2 bits (15), Expect = 1.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 21 tccatcctgtgcagg 35
|||||||||||||||
Sbjct: 196 tccatcctgtgcagg 210
>ISHha2
Length = 1339
Score = 30.2 bits (15), Expect = 1.7
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 245 cggctgctcatgcagcagc 263
|||||||||||| ||||||
Sbjct: 303 cggctgctcatggagcagc 321
>ISAcma27
Length = 1185
Score = 30.2 bits (15), Expect = 1.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 105 gcatgcttgttcatc 119
|||||||||||||||
Sbjct: 820 gcatgcttgttcatc 806
>ISCARN27
Length = 1356
Score = 30.2 bits (15), Expect = 1.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 270 agcttgccgatgcgc 284
|||||||||||||||
Sbjct: 324 agcttgccgatgcgc 310
>ISDds6
Length = 2207
Score = 30.2 bits (15), Expect = 1.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 54 tggctcaggtggttc 68
|||||||||||||||
Sbjct: 1041 tggctcaggtggttc 1055
>ISRhosp8
Length = 1439
Score = 30.2 bits (15), Expect = 1.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 69 tcgggctcctcgatc 83
|||||||||||||||
Sbjct: 1167 tcgggctcctcgatc 1181
>ISBlo1
Length = 2590
Score = 30.2 bits (15), Expect = 1.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 69 tcgggctcctcgatc 83
|||||||||||||||
Sbjct: 1638 tcgggctcctcgatc 1624
>IS30H
Length = 1221
Score = 30.2 bits (15), Expect = 1.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 165 gtgaacggaacgcca 179
|||||||||||||||
Sbjct: 699 gtgaacggaacgcca 713
>TnAs3
Length = 18735
Score = 28.2 bits (14), Expect = 6.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 154 gcccggccatcgtg 167
||||||||||||||
Sbjct: 1465 gcccggccatcgtg 1478
>ISNch1
Length = 1636
Score = 28.2 bits (14), Expect = 6.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 57 ctcaggtggttctc 70
||||||||||||||
Sbjct: 282 ctcaggtggttctc 269
>TnAs1
Length = 6694
Score = 28.2 bits (14), Expect = 6.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 10 tggccagcgcttcc 23
||||||||||||||
Sbjct: 5734 tggccagcgcttcc 5747
>ISAs25
Length = 1722
Score = 28.2 bits (14), Expect = 6.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 175 cgccatcgacgtgg 188
||||||||||||||
Sbjct: 504 cgccatcgacgtgg 491
>ISPsp10
Length = 945
Score = 28.2 bits (14), Expect = 6.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 170 cggaacgccatcga 183
||||||||||||||
Sbjct: 796 cggaacgccatcga 809
>ISPa43
Length = 19903
Score = 28.2 bits (14), Expect = 6.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 174 acgccatcgacgtg 187
||||||||||||||
Sbjct: 9486 acgccatcgacgtg 9473
>ISEc36
Length = 1321
Score = 28.2 bits (14), Expect = 6.7
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 250 gctcatgcagcagcgcat 267
||||| ||||||||||||
Sbjct: 722 gctcaagcagcagcgcat 705
>ISXo9
Length = 1513
Score = 28.2 bits (14), Expect = 6.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 14 cagcgcttccatcc 27
||||||||||||||
Sbjct: 506 cagcgcttccatcc 493
>ISAzo29
Length = 1304
Score = 28.2 bits (14), Expect = 6.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 117 atcgccagtgcgat 130
||||||||||||||
Sbjct: 1014 atcgccagtgcgat 1001
>ISCARN45
Length = 1430
Score = 28.2 bits (14), Expect = 6.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 172 gaacgccatcgacg 185
||||||||||||||
Sbjct: 194 gaacgccatcgacg 181
>ISMysp6
Length = 1077
Score = 28.2 bits (14), Expect = 6.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 117 atcgccagtgcgat 130
||||||||||||||
Sbjct: 187 atcgccagtgcgat 200
>ISAfe2
Length = 1124
Score = 28.2 bits (14), Expect = 6.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 321 gccttggattcgcg 334
||||||||||||||
Sbjct: 705 gccttggattcgcg 692
>ISShes12
Length = 1721
Score = 28.2 bits (14), Expect = 6.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 175 cgccatcgacgtgg 188
||||||||||||||
Sbjct: 503 cgccatcgacgtgg 490
>ISXoo4
Length = 1530
Score = 28.2 bits (14), Expect = 6.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 14 cagcgcttccatcc 27
||||||||||||||
Sbjct: 514 cagcgcttccatcc 501
>ISEca11
Length = 1200
Score = 28.2 bits (14), Expect = 6.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 10 tggccagcgcttcc 23
||||||||||||||
Sbjct: 785 tggccagcgcttcc 772
>ISEc27
Length = 1321
Score = 28.2 bits (14), Expect = 6.7
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 250 gctcatgcagcagcgcat 267
||||| ||||||||||||
Sbjct: 722 gctcaagcagcagcgcat 705
>ISSpu3
Length = 1202
Score = 28.2 bits (14), Expect = 6.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 314 caatgccgccttgg 327
||||||||||||||
Sbjct: 288 caatgccgccttgg 275
>ISBcen28
Length = 2311
Score = 28.2 bits (14), Expect = 6.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 152 ttgcccggccatcg 165
||||||||||||||
Sbjct: 1238 ttgcccggccatcg 1251
>ISXo17
Length = 1192
Score = 28.2 bits (14), Expect = 6.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 175 cgccatcgacgtgg 188
||||||||||||||
Sbjct: 763 cgccatcgacgtgg 776
>ISOba1
Length = 1271
Score = 28.2 bits (14), Expect = 6.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 10 tggccagcgcttcc 23
||||||||||||||
Sbjct: 716 tggccagcgcttcc 729
>ISAtu3
Length = 1597
Score = 28.2 bits (14), Expect = 6.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 71 gggctcctcgatca 84
||||||||||||||
Sbjct: 1293 gggctcctcgatca 1280
>ISMca2
Length = 1308
Score = 28.2 bits (14), Expect = 6.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 250 gctcatgcagcagc 263
||||||||||||||
Sbjct: 645 gctcatgcagcagc 658
>ISRso1
Length = 884
Score = 28.2 bits (14), Expect = 6.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 9 ctggccagcgcttc 22
||||||||||||||
Sbjct: 593 ctggccagcgcttc 580
>IS1396
Length = 1771
Score = 28.2 bits (14), Expect = 6.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 6 tcgctggccagcgc 19
||||||||||||||
Sbjct: 1674 tcgctggccagcgc 1687
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_85_length_338_cov_0.766284_ID_5342
(338 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISNmo4 | IS5 | IS5 | Nitrococcus mobilis | 34 | 0.11 |
| ISCARN17 | IS21 | Metagenomic data from CARNOULES | 34 | 0.11 | |
| ISAeme14 | IS4 | IS4 | Aeromonas media | 32 | 0.43 |
| ISMch7 | IS701 | Methylobacterium chloromethanicum | 32 | 0.43 | |
| ISAzo27 | IS5 | IS5 | Azoarcus sp. | 32 | 0.43 |
| ISRtr5 | IS66 | Rhizobium tropici | 30 | 1.7 | |
| ISFK1 | IS21 | Bradyrhizobium japonicum | 30 | 1.7 | |
| ISGvi7 | ISKra4 | ISMich2 | Gloeobacter violaceus | 30 | 1.7 |
| ISAcfe1 | IS1182 | Acidimicrobium ferrooxidans | 30 | 1.7 | |
| ISAzo11 | IS5 | IS5 | Azoarcus sp. | 30 | 1.7 |
| ISFpe1 | IS66 | Fulvimarina pelagi | 30 | 1.7 | |
| IS1554 | IS256 | Mycobacterium tuberculosis | 30 | 1.7 | |
| ISPpr11 | ISAs1 | Photobacterium profundum | 30 | 1.7 | |
| ISStac1 | IS110 | IS1111 | Streptomyces aculeolatus | 30 | 1.7 |
| ISSam1 | IS110 | Streptomyces ambofaciens | 30 | 1.7 | |
| ISGur1 | IS4 | ISPepr1 | Geobacter uraniumreducens | 30 | 1.7 |
| ISAs25 | IS1634 | Aeromonas salmonicida | 28 | 6.7 | |
| ISAzs21 | IS66 | Azospirillum sp. | 28 | 6.7 | |
| ISGeob5 | IS5 | IS427 | Geodermatophilus obscurus | 28 | 6.7 |
| ISGeob3 | IS5 | ISL2 | Geodermatophilus obscurus | 28 | 6.7 |
| ISPso3 | IS5 | IS5 | Paracoccus solventivorans | 28 | 6.7 |
| ISPmar3 | IS5 | IS5 | Paracoccus marcusii | 28 | 6.7 |
| ISNha6 | IS5 | IS5 | Nitrobacter hamburgensis | 28 | 6.7 |
| ISMpo9 | IS701 | Methylobacterium populi | 28 | 6.7 | |
| ISMch4 | IS110 | IS1111 | Methylobacterium chloromethanicum | 28 | 6.7 |
| ISMch1 | IS3 | IS150 | Methylobacterium chloromethanicum | 28 | 6.7 |
| ISTko2 | IS607 | Thermococcus kodakarensis | 28 | 6.7 | |
| ISDpr6 | IS1380 | Delta proteobacterium | 28 | 6.7 | |
| ISThsp13 | IS1380 | Thiomonas sp. | 28 | 6.7 | |
| ISCARN108 | IS66 | Metagenomic data from CARNOULES | 28 | 6.7 | |
| ISCARN52 | IS110 | Metagenomic data from CARNOULES | 28 | 6.7 | |
| ISCARN15 | IS66 | Metagenomic data from CARNOULES | 28 | 6.7 | |
| ISAli20 | Tn3 | Azospirillum lipoferum | 28 | 6.7 | |
| ISMno3 | IS66 | ISBst12 | Methylobacterium nodulans | 28 | 6.7 |
| ISRme9 | IS21 | Ralstonia metallidurans | 28 | 6.7 | |
| ISDge9 | IS4 | IS10 | Deinococcus geothermalis | 28 | 6.7 |
| ISMsm6 | IS1634 | Mycobacterium smegmatis | 28 | 6.7 | |
| ISRta3 | IS110 | Ralstonia taiwanensis | 28 | 6.7 | |
| ISRme15 | IS3 | IS51 | Ralstonia metallidurans | 28 | 6.7 |
| ISSgr1 | IS110 | IS1111 | Streptomyces griseus | 28 | 6.7 |
| ISAzvi12 | IS110 | IS1111 | Azotobacter vinelandii | 28 | 6.7 |
| ISVch6 | IS630 | Vibrio cholerae | 28 | 6.7 | |
| ISBxe1 | IS3 | IS3 | Burkholderia xenovorans | 28 | 6.7 |
| ISTasp1 | IS5 | IS903 | Thalassiobium sp. | 28 | 6.7 |
| ISGvi4 | IS4 | IS4Sa | Gloeobacter violaceus | 28 | 6.7 |
| ISSpo3 | IS1595 | ISNwi1 | Silicibacter pomeroyi | 28 | 6.7 |
| ISMyma5 | IS481 | - | Mycobacterium marinum | 28 | 6.7 |
| ISvNY2A_2 | IS607 | Virus NY2A | 28 | 6.7 | |
| ISEcl1 | IS3 | IS2 | Enterobacter cloacae | 28 | 6.7 |
| ISBmu3 | IS21 | Burkholderia multivorans | 28 | 6.7 | |
| ISSco1 | IS481 | - | Streptomyces coelicolor | 28 | 6.7 |
| ISPfl2 | IS30 | - | Pseudomonas fluorescens | 28 | 6.7 |
| ISMt3 | IS21 | - | Mycobacterium tuberculosis | 28 | 6.7 |
| ISMbo1 | IS21 | - | Mycobacterium bovis | 28 | 6.7 |
| IS1652 | IS481 | - | Streptomyces coelicolor | 28 | 6.7 |
| IS1649 | IS481 | - | Streptomyces coelicolor | 28 | 6.7 |
| IS110 | IS110 | - | Streptomyces coelicolor | 28 | 6.7 |
>ISNmo4
Length = 1176
Score = 34.2 bits (17), Expect = 0.11
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 257 gccgcccttgagcagcg 273
|||||||||||||||||
Sbjct: 488 gccgcccttgagcagcg 472
>ISCARN17
Length = 2539
Score = 34.2 bits (17), Expect = 0.11
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 257 gccgcccttgagcagcg 273
|||||||||||||||||
Sbjct: 193 gccgcccttgagcagcg 177
>ISAeme14
Length = 1425
Score = 32.2 bits (16), Expect = 0.43
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 171 atcactgcctgggtgagcag 190
||||| ||||||||||||||
Sbjct: 623 atcacggcctgggtgagcag 604
>ISMch7
Length = 1412
Score = 32.2 bits (16), Expect = 0.43
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 35 gtcgcgcaccacgtcg 50
||||||||||||||||
Sbjct: 324 gtcgcgcaccacgtcg 309
>ISAzo27
Length = 1164
Score = 32.2 bits (16), Expect = 0.43
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 257 gccgcccttgagcagc 272
||||||||||||||||
Sbjct: 479 gccgcccttgagcagc 464
>ISRtr5
Length = 2577
Score = 30.2 bits (15), Expect = 1.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 259 cgcccttgagcagcg 273
|||||||||||||||
Sbjct: 991 cgcccttgagcagcg 1005
Score = 28.2 bits (14), Expect = 6.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 203 cgcctggccctggc 216
||||||||||||||
Sbjct: 215 cgcctggccctggc 228
>ISFK1
Length = 2592
Score = 30.2 bits (15), Expect = 1.7
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 164 ggcgtcgatcactgcctgg 182
|||||||||||| ||||||
Sbjct: 1478 ggcgtcgatcacggcctgg 1460
>ISGvi7
Length = 1220
Score = 30.2 bits (15), Expect = 1.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 318 gcgatgccgtgcagc 332
|||||||||||||||
Sbjct: 672 gcgatgccgtgcagc 658
>ISAcfe1
Length = 1772
Score = 30.2 bits (15), Expect = 1.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 229 cctcgaccatcacga 243
|||||||||||||||
Sbjct: 1007 cctcgaccatcacga 1021
>ISAzo11
Length = 1280
Score = 30.2 bits (15), Expect = 1.7
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 25 gcgcgcgcgggtcgcgcac 43
|||||||||||||| ||||
Sbjct: 949 gcgcgcgcgggtcgagcac 967
>ISFpe1
Length = 2489
Score = 30.2 bits (15), Expect = 1.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 165 gcgtcgatcactgcc 179
|||||||||||||||
Sbjct: 511 gcgtcgatcactgcc 497
>IS1554
Length = 1462
Score = 30.2 bits (15), Expect = 1.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 248 cgcatgccagccgcc 262
|||||||||||||||
Sbjct: 1384 cgcatgccagccgcc 1398
>ISPpr11
Length = 1238
Score = 30.2 bits (15), Expect = 1.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 231 tcgaccatcacgatg 245
|||||||||||||||
Sbjct: 875 tcgaccatcacgatg 861
>ISStac1
Length = 1484
Score = 30.2 bits (15), Expect = 1.7
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 179 ctgggtgagcagcccgcgg 197
|||||||||||| ||||||
Sbjct: 756 ctgggtgagcaggccgcgg 738
>ISSam1
Length = 1489
Score = 30.2 bits (15), Expect = 1.7
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 179 ctgggtgagcagcccgcgg 197
|||||||||||| ||||||
Sbjct: 752 ctgggtgagcaggccgcgg 734
>ISGur1
Length = 1556
Score = 30.2 bits (15), Expect = 1.7
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 2 cacccgtgccagcatttcg 20
|||||||||||||| ||||
Sbjct: 529 cacccgtgccagcagttcg 511
>ISAs25
Length = 1722
Score = 28.2 bits (14), Expect = 6.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 195 cggttgagcgcctg 208
||||||||||||||
Sbjct: 310 cggttgagcgcctg 323
>ISAzs21
Length = 2598
Score = 28.2 bits (14), Expect = 6.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 68 gcccgcttcgtcca 81
||||||||||||||
Sbjct: 47 gcccgcttcgtcca 34
>ISGeob5
Length = 903
Score = 28.2 bits (14), Expect = 6.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 177 gcctgggtgagcag 190
||||||||||||||
Sbjct: 354 gcctgggtgagcag 367
>ISGeob3
Length = 970
Score = 28.2 bits (14), Expect = 6.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 194 gcggttgagcgcct 207
||||||||||||||
Sbjct: 880 gcggttgagcgcct 867
>ISPso3
Length = 1283
Score = 28.2 bits (14), Expect = 6.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 25 gcgcgcgcgggtcg 38
||||||||||||||
Sbjct: 950 gcgcgcgcgggtcg 963
>ISPmar3
Length = 1282
Score = 28.2 bits (14), Expect = 6.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 25 gcgcgcgcgggtcg 38
||||||||||||||
Sbjct: 950 gcgcgcgcgggtcg 963
>ISNha6
Length = 1547
Score = 28.2 bits (14), Expect = 6.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 305 cgccagatcgactg 318
||||||||||||||
Sbjct: 269 cgccagatcgactg 282
>ISMpo9
Length = 1413
Score = 28.2 bits (14), Expect = 6.7
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 95 gcgctggcagtgcgggca 112
|||| |||||||||||||
Sbjct: 1372 gcgccggcagtgcgggca 1355
>ISMch4
Length = 1631
Score = 28.2 bits (14), Expect = 6.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 134 gttgccgctcacgg 147
||||||||||||||
Sbjct: 1347 gttgccgctcacgg 1334
>ISMch1
Length = 1294
Score = 28.2 bits (14), Expect = 6.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 162 gcggcgtcgatcac 175
||||||||||||||
Sbjct: 505 gcggcgtcgatcac 492
>ISTko2
Length = 1855
Score = 28.2 bits (14), Expect = 6.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 74 ttcgtccagatact 87
||||||||||||||
Sbjct: 1250 ttcgtccagatact 1263
>ISDpr6
Length = 1655
Score = 28.2 bits (14), Expect = 6.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 51 tggtaggtgtaggc 64
||||||||||||||
Sbjct: 583 tggtaggtgtaggc 570
>ISThsp13
Length = 1583
Score = 28.2 bits (14), Expect = 6.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 152 gcgcgcggcagcgg 165
||||||||||||||
Sbjct: 241 gcgcgcggcagcgg 254
>ISCARN108
Length = 2423
Score = 28.2 bits (14), Expect = 6.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 244 tgggcgcatgccag 257
||||||||||||||
Sbjct: 1845 tgggcgcatgccag 1858
>ISCARN52
Length = 1640
Score = 28.2 bits (14), Expect = 6.7
Identities = 24/26 (92%), Gaps = 1/26 (3%)
Strand = Plus / Minus
Query: 20 gtacagcgcgcgcgggtcgcgcacca 45
||||| ||||||||||| ||||||||
Sbjct: 596 gtacaccgcgcgcgggt-gcgcacca 572
>ISCARN15
Length = 2427
Score = 28.2 bits (14), Expect = 6.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 244 tgggcgcatgccag 257
||||||||||||||
Sbjct: 1803 tgggcgcatgccag 1816
>ISAli20
Length = 3828
Score = 28.2 bits (14), Expect = 6.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 38 gcgcaccacgtcgt 51
||||||||||||||
Sbjct: 3246 gcgcaccacgtcgt 3233
>ISMno3
Length = 1364
Score = 28.2 bits (14), Expect = 6.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 145 cggccgtgcgcgcg 158
||||||||||||||
Sbjct: 1099 cggccgtgcgcgcg 1112
>ISRme9
Length = 2688
Score = 28.2 bits (14), Expect = 6.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 23 cagcgcgcgcgggt 36
||||||||||||||
Sbjct: 941 cagcgcgcgcgggt 928
>ISDge9
Length = 1127
Score = 28.2 bits (14), Expect = 6.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 67 tgcccgcttcgtcc 80
||||||||||||||
Sbjct: 301 tgcccgcttcgtcc 314
>ISMsm6
Length = 1765
Score = 28.2 bits (14), Expect = 6.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 217 tcaccaccttgccc 230
||||||||||||||
Sbjct: 189 tcaccaccttgccc 176
Score = 28.2 bits (14), Expect = 6.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 293 ccagtcgcgcaccg 306
||||||||||||||
Sbjct: 1583 ccagtcgcgcaccg 1596
>ISRta3
Length = 1574
Score = 28.2 bits (14), Expect = 6.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 170 gatcactgcctggg 183
||||||||||||||
Sbjct: 849 gatcactgcctggg 862
>ISRme15
Length = 1325
Score = 28.2 bits (14), Expect = 6.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 95 gcgctggcagtgcg 108
||||||||||||||
Sbjct: 338 gcgctggcagtgcg 325
>ISSgr1
Length = 1544
Score = 28.2 bits (14), Expect = 6.7
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 179 ctgggtgagcagcccgcg 196
|||||||||||| |||||
Sbjct: 756 ctgggtgagcaggccgcg 739
>ISAzvi12
Length = 1248
Score = 28.2 bits (14), Expect = 6.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 197 gttgagcgcctggc 210
||||||||||||||
Sbjct: 796 gttgagcgcctggc 809
>ISVch6
Length = 1088
Score = 28.2 bits (14), Expect = 6.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 230 ctcgaccatcacga 243
||||||||||||||
Sbjct: 131 ctcgaccatcacga 118
>ISBxe1
Length = 1282
Score = 28.2 bits (14), Expect = 6.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 320 gatgccgtgcagct 333
||||||||||||||
Sbjct: 638 gatgccgtgcagct 625
>ISTasp1
Length = 1053
Score = 28.2 bits (14), Expect = 6.7
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 96 cgctggcagtgcgggcag 113
|||||| |||||||||||
Sbjct: 536 cgctggaagtgcgggcag 553
>ISGvi4
Length = 1160
Score = 28.2 bits (14), Expect = 6.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 121 tgccgaagatgtgg 134
||||||||||||||
Sbjct: 993 tgccgaagatgtgg 1006
>ISSpo3
Length = 1947
Score = 28.2 bits (14), Expect = 6.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 74 ttcgtccagatact 87
||||||||||||||
Sbjct: 873 ttcgtccagatact 860
>ISMyma5
Length = 1838
Score = 28.2 bits (14), Expect = 6.7
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 217 tcaccaccttgccctcga 234
||||||||||| ||||||
Sbjct: 662 tcaccaccttgacctcga 645
>ISvNY2A_2
Length = 1443
Score = 28.2 bits (14), Expect = 6.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 274 gttgccaccattcg 287
||||||||||||||
Sbjct: 995 gttgccaccattcg 1008
>ISEcl1
Length = 1336
Score = 28.2 bits (14), Expect = 6.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 182 ggtgagcagcccgc 195
||||||||||||||
Sbjct: 1089 ggtgagcagcccgc 1102
>ISBmu3
Length = 2697
Score = 28.2 bits (14), Expect = 6.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 300 cgcaccgccagatc 313
||||||||||||||
Sbjct: 354 cgcaccgccagatc 367
>ISSco1
Length = 1057
Score = 28.2 bits (14), Expect = 6.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 56 ggtgtaggcgatgc 69
||||||||||||||
Sbjct: 669 ggtgtaggcgatgc 656
>ISPfl2
Length = 1081
Score = 28.2 bits (14), Expect = 6.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 227 gccctcgaccatca 240
||||||||||||||
Sbjct: 125 gccctcgaccatca 138
>ISMt3
Length = 2213
Score = 28.2 bits (14), Expect = 6.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 35 gtcgcgcaccacgt 48
||||||||||||||
Sbjct: 422 gtcgcgcaccacgt 435
>ISMbo1
Length = 2212
Score = 28.2 bits (14), Expect = 6.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 35 gtcgcgcaccacgt 48
||||||||||||||
Sbjct: 422 gtcgcgcaccacgt 435
>IS1652
Length = 1060
Score = 28.2 bits (14), Expect = 6.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 56 ggtgtaggcgatgc 69
||||||||||||||
Sbjct: 672 ggtgtaggcgatgc 659
>IS1649
Length = 1060
Score = 28.2 bits (14), Expect = 6.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 56 ggtgtaggcgatgc 69
||||||||||||||
Sbjct: 672 ggtgtaggcgatgc 659
>IS110
Length = 1558
Score = 28.2 bits (14), Expect = 6.7
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 179 ctgggtgagcagcccgcg 196
|||||||||||| |||||
Sbjct: 756 ctgggtgagcaggccgcg 739
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_86_length_338_cov_0.754789_ID_5344
(338 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISRssp1 | IS3 | IS407 | Roseovarius sp. | 32 | 0.43 |
| IS1601 | IS256 | - | Mycobacterium avium | 32 | 0.43 |
| ISBlma9 | IS66 | Blastopirellula marina | 30 | 1.7 | |
| TnXo19 | Tn3 | Xanthomonas oryzae | 28 | 6.7 | |
| ISAsp11 | IS200/IS605 | IS1341 | Anabaena sp. | 28 | 6.7 |
| ISCsa4 | IS110 | Caldicellulosiruptor saccharolyticus | 28 | 6.7 | |
| ISAzba9 | ISL3 | Azospirillum brasilense | 28 | 6.7 | |
| ISErh4 | IS30 | Erysipelothrix rhusiopathiae | 28 | 6.7 | |
| ISHmo2 | IS1182 | Heliobacterium modesticaldum | 28 | 6.7 | |
| ISCpo1 | ISNCY | ISDol1 | Candidatus Poribacteria sp. | 28 | 6.7 |
| ISMpo8 | IS5 | IS427 | Methylobacterium populi | 28 | 6.7 |
| ISSav5 | IS481 | Streptomyces avermitilis | 28 | 6.7 | |
| ISCth9 | IS21 | Clostridium thermocellum | 28 | 6.7 | |
| ISAzo28 | IS110 | Azoarcus sp. | 28 | 6.7 | |
| ISCARN42 | IS701 | Metagenomic data from CARNOULES | 28 | 6.7 | |
| ISGme9 | IS481 | Geobacter metallireducens | 28 | 6.7 | |
| ISMamg1 | IS3 | IS407 | Magnetospirillum magneticum | 28 | 6.7 |
| ISEnfa3 | IS3 | IS150 | Enterococcus faecium | 28 | 6.7 |
| ISDra5 | IS5 | IS1031 | Deinococcus radiodurans | 28 | 6.7 |
| IS1629 | ISAs1 | - | Streptomyces sp. | 28 | 6.7 |
>ISRssp1
Length = 1253
Score = 32.2 bits (16), Expect = 0.43
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 93 atacccgaaccgacgc 108
||||||||||||||||
Sbjct: 516 atacccgaaccgacgc 501
>IS1601
Length = 1417
Score = 32.2 bits (16), Expect = 0.43
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 42 ccgccgcgtggagacg 57
||||||||||||||||
Sbjct: 482 ccgccgcgtggagacg 467
>ISBlma9
Length = 2606
Score = 30.2 bits (15), Expect = 1.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 253 gaagcgggcggtgcg 267
|||||||||||||||
Sbjct: 255 gaagcgggcggtgcg 269
>TnXo19
Length = 18767
Score = 28.2 bits (14), Expect = 6.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 278 ccagtgacctgctc 291
||||||||||||||
Sbjct: 5708 ccagtgacctgctc 5695
>ISAsp11
Length = 1512
Score = 28.2 bits (14), Expect = 6.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 176 atgagttcaaagtc 189
||||||||||||||
Sbjct: 282 atgagttcaaagtc 295
>ISCsa4
Length = 1990
Score = 28.2 bits (14), Expect = 6.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 244 cttgaagaagaagc 257
||||||||||||||
Sbjct: 1279 cttgaagaagaagc 1292
>ISAzba9
Length = 1847
Score = 28.2 bits (14), Expect = 6.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 256 gcgggcggtgcgcc 269
||||||||||||||
Sbjct: 1418 gcgggcggtgcgcc 1431
>ISErh4
Length = 1032
Score = 28.2 bits (14), Expect = 6.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 235 cagatcattcttga 248
||||||||||||||
Sbjct: 644 cagatcattcttga 631
>ISHmo2
Length = 1914
Score = 28.2 bits (14), Expect = 6.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 263 gtgcgccgatgttt 276
||||||||||||||
Sbjct: 1462 gtgcgccgatgttt 1449
>ISCpo1
Length = 1918
Score = 28.2 bits (14), Expect = 6.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 79 cgattgatcaaaaa 92
||||||||||||||
Sbjct: 1076 cgattgatcaaaaa 1089
>ISMpo8
Length = 849
Score = 28.2 bits (14), Expect = 6.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 203 ccggagatgacctg 216
||||||||||||||
Sbjct: 188 ccggagatgacctg 175
>ISSav5
Length = 1953
Score = 28.2 bits (14), Expect = 6.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 252 agaagcgggcggtg 265
||||||||||||||
Sbjct: 751 agaagcgggcggtg 738
>ISCth9
Length = 2419
Score = 28.2 bits (14), Expect = 6.7
Identities = 23/26 (88%)
Strand = Plus / Minus
Query: 274 tttaccagtgacctgctctcccacat 299
|||| ||||||| | |||||||||||
Sbjct: 1116 tttaacagtgactttctctcccacat 1091
>ISAzo28
Length = 1486
Score = 28.2 bits (14), Expect = 6.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 162 ggtactggccaacg 175
||||||||||||||
Sbjct: 485 ggtactggccaacg 498
>ISCARN42
Length = 1473
Score = 28.2 bits (14), Expect = 6.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 257 cgggcggtgcgccg 270
||||||||||||||
Sbjct: 832 cgggcggtgcgccg 819
>ISGme9
Length = 1353
Score = 28.2 bits (14), Expect = 6.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 261 cggtgcgccgatgt 274
||||||||||||||
Sbjct: 493 cggtgcgccgatgt 480
>ISMamg1
Length = 1256
Score = 28.2 bits (14), Expect = 6.7
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 252 agaagcgggcggtgcgcc 269
|||||| |||||||||||
Sbjct: 593 agaagctggcggtgcgcc 610
>ISEnfa3
Length = 1416
Score = 28.2 bits (14), Expect = 6.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 243 tcttgaagaagaag 256
||||||||||||||
Sbjct: 452 tcttgaagaagaag 465
>ISDra5
Length = 911
Score = 28.2 bits (14), Expect = 6.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 277 accagtgacctgct 290
||||||||||||||
Sbjct: 608 accagtgacctgct 595
>IS1629
Length = 1462
Score = 28.2 bits (14), Expect = 6.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 324 gcaggggatgatgg 337
||||||||||||||
Sbjct: 156 gcaggggatgatgg 143
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_87_length_335_cov_0.794574_ID_5346
(335 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISPa36 | IS21 | Pseudomonas aeruginosa | 32 | 0.43 | |
| ISRhsp7 | IS5 | Rhodobacter sphaeroides | 32 | 0.43 | |
| ISNml2 | IS1380 | Nakamurella multipartita | 32 | 0.43 | |
| ISCARN52 | IS110 | Metagenomic data from CARNOULES | 32 | 0.43 | |
| ISNma17 | IS200/IS605 | IS1341 | Natrialba magadii | 30 | 1.7 |
| ISMet1 | ISKra4 | ISAzba1 | Methylocystis sp. | 30 | 1.7 |
| ISAcma48 | IS4 | IS10 | Acaryochloris marina | 30 | 1.7 |
| ISAzo19 | IS66 | Azoarcus sp. | 30 | 1.7 | |
| ISSba20 | IS21 | Shewanella baltica | 30 | 1.7 | |
| ISCARN24 | IS21 | Metagenomic data from CARNOULES | 30 | 1.7 | |
| ISBcen19 | IS66 | Burkholderia cenocepacia | 30 | 1.7 | |
| ISEhe1 | IS630 | - | Erwinia herbicola | 30 | 1.7 |
| IS117 | IS110 | - | Streptomyces coelicolor | 30 | 1.7 |
| ISNagr11 | IS200/IS605 | IS1341 | Natronobacterium gregoryi | 28 | 6.6 |
| ISLho1 | ISLre2 | Lactobacillus hokkaidonensis | 28 | 6.6 | |
| ISHli12 | IS200/IS605 | IS1341 | Halohasta litchfieldiae | 28 | 6.6 |
| ISAzs11 | ISAs1 | Azospirillum sp. | 28 | 6.6 | |
| ISAzs5 | ISAs1 | Azospirillum sp. | 28 | 6.6 | |
| ISMno13 | IS66 | Methylobacterium nodulans | 28 | 6.6 | |
| ISRce1 | ISAs1 | Rhodospirillum centenum | 28 | 6.6 | |
| ISCARN78 | IS21 | Metagenomic data from CARNOULES | 28 | 6.6 | |
| ISAli14 | ISAs1 | Azospirillum lipoferum | 28 | 6.6 | |
| ISSpu10 | IS5 | IS427 | Shewanella putrefaciens | 28 | 6.6 |
| ISBrsp5 | IS66 | ISBst12 | Bradyrhizobium sp. | 28 | 6.6 |
| ISOgr3 | IS5 | IS903 | Oceanicola granulosus | 28 | 6.6 |
| ISRusp1 | IS5 | IS903 | Ruegeria sp. | 28 | 6.6 |
| ISSpo6 | IS630 | Silicibacter pomeroyi | 28 | 6.6 | |
| ISAzo8 | ISAs1 | Azoarcus sp. | 28 | 6.6 | |
| ISGur7 | ISL3 | Geobacter uraniumreducens | 28 | 6.6 | |
| ISOba2 | IS3 | IS407 | Oceanicola batsensis | 28 | 6.6 |
| ISChy1 | IS110 | Carboxydothermus hydrogenoformans | 28 | 6.6 | |
| ISPa21 | IS110 | IS1111 | Pseudomonas aeruginosa | 28 | 6.6 |
| ISMav1 | IS21 | - | Mycobacterium avium | 28 | 6.6 |
| IS466 | ISL3 | - | Streptomyces coelicolor | 28 | 6.6 |
| IS1612 | IS21 | - | Mycobacterium avium | 28 | 6.6 |
| IS1547 | IS110 | - | Mycobacterium tuberculosis | 28 | 6.6 |
>ISPa36
Length = 2468
Score = 32.2 bits (16), Expect = 0.43
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 237 cccgagaacgtcgtcc 252
||||||||||||||||
Sbjct: 1894 cccgagaacgtcgtcc 1909
>ISRhsp7
Length = 1397
Score = 32.2 bits (16), Expect = 0.43
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 248 cgtcccgcgcatcaag 263
||||||||||||||||
Sbjct: 90 cgtcccgcgcatcaag 75
>ISNml2
Length = 1689
Score = 32.2 bits (16), Expect = 0.43
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 113 ctggttctggttcgat 128
||||||||||||||||
Sbjct: 107 ctggttctggttcgat 92
>ISCARN52
Length = 1640
Score = 32.2 bits (16), Expect = 0.43
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 151 cggtgctgctgcatcg 166
||||||||||||||||
Sbjct: 1142 cggtgctgctgcatcg 1157
>ISNma17
Length = 1585
Score = 30.2 bits (15), Expect = 1.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 133 ccttccaccgcaacc 147
|||||||||||||||
Sbjct: 690 ccttccaccgcaacc 704
>ISMet1
Length = 1557
Score = 30.2 bits (15), Expect = 1.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 119 ctggttcgatccgcc 133
|||||||||||||||
Sbjct: 627 ctggttcgatccgcc 641
>ISAcma48
Length = 1142
Score = 30.2 bits (15), Expect = 1.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 133 ccttccaccgcaacc 147
|||||||||||||||
Sbjct: 757 ccttccaccgcaacc 743
>ISAzo19
Length = 2423
Score = 30.2 bits (15), Expect = 1.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 255 cgcatcaaggcgatg 269
|||||||||||||||
Sbjct: 1544 cgcatcaaggcgatg 1558
>ISSba20
Length = 2394
Score = 30.2 bits (15), Expect = 1.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 229 agaaaaagcccgaga 243
|||||||||||||||
Sbjct: 1663 agaaaaagcccgaga 1677
>ISCARN24
Length = 2778
Score = 30.2 bits (15), Expect = 1.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 5 ccgctcgagcatccg 19
|||||||||||||||
Sbjct: 1503 ccgctcgagcatccg 1489
>ISBcen19
Length = 2450
Score = 30.2 bits (15), Expect = 1.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 89 gaaggccgacttccc 103
|||||||||||||||
Sbjct: 254 gaaggccgacttccc 268
>ISEhe1
Length = 1157
Score = 30.2 bits (15), Expect = 1.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 57 atggatcgctttctg 71
|||||||||||||||
Sbjct: 163 atggatcgctttctg 149
>IS117
Length = 2527
Score = 30.2 bits (15), Expect = 1.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 69 ctgatcgccgacgtg 83
|||||||||||||||
Sbjct: 356 ctgatcgccgacgtg 342
>ISNagr11
Length = 1732
Score = 28.2 bits (14), Expect = 6.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 8 ctcgagcatccgca 21
||||||||||||||
Sbjct: 1268 ctcgagcatccgca 1255
>ISLho1
Length = 1547
Score = 28.2 bits (14), Expect = 6.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 234 aagcccgagaacgt 247
||||||||||||||
Sbjct: 658 aagcccgagaacgt 671
>ISHli12
Length = 1393
Score = 28.2 bits (14), Expect = 6.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 134 cttccaccgcaacc 147
||||||||||||||
Sbjct: 346 cttccaccgcaacc 359
>ISAzs11
Length = 1224
Score = 28.2 bits (14), Expect = 6.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 38 catcgacggcaaga 51
||||||||||||||
Sbjct: 403 catcgacggcaaga 416
>ISAzs5
Length = 1333
Score = 28.2 bits (14), Expect = 6.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 38 catcgacggcaaga 51
||||||||||||||
Sbjct: 436 catcgacggcaaga 449
>ISMno13
Length = 2459
Score = 28.2 bits (14), Expect = 6.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 257 catcaaggcgatgc 270
||||||||||||||
Sbjct: 1024 catcaaggcgatgc 1037
>ISRce1
Length = 1267
Score = 28.2 bits (14), Expect = 6.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 38 catcgacggcaaga 51
||||||||||||||
Sbjct: 436 catcgacggcaaga 449
>ISCARN78
Length = 2644
Score = 28.2 bits (14), Expect = 6.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 14 catccgcaccatgc 27
||||||||||||||
Sbjct: 1873 catccgcaccatgc 1886
>ISAli14
Length = 1267
Score = 28.2 bits (14), Expect = 6.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 38 catcgacggcaaga 51
||||||||||||||
Sbjct: 448 catcgacggcaaga 461
>ISSpu10
Length = 879
Score = 28.2 bits (14), Expect = 6.6
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 174 gataacgtgttccgcatc 191
|||||||||||| |||||
Sbjct: 581 gataacgtgttcggcatc 564
>ISBrsp5
Length = 1541
Score = 28.2 bits (14), Expect = 6.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 34 tggacatcgacggc 47
||||||||||||||
Sbjct: 1003 tggacatcgacggc 1016
>ISOgr3
Length = 1052
Score = 28.2 bits (14), Expect = 6.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 118 tctggttcgatccg 131
||||||||||||||
Sbjct: 151 tctggttcgatccg 164
>ISRusp1
Length = 1051
Score = 28.2 bits (14), Expect = 6.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 118 tctggttcgatccg 131
||||||||||||||
Sbjct: 151 tctggttcgatccg 164
>ISSpo6
Length = 1052
Score = 28.2 bits (14), Expect = 6.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 213 gccgatccggcgga 226
||||||||||||||
Sbjct: 370 gccgatccggcgga 383
>ISAzo8
Length = 1261
Score = 28.2 bits (14), Expect = 6.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 38 catcgacggcaaga 51
||||||||||||||
Sbjct: 453 catcgacggcaaga 466
>ISGur7
Length = 1342
Score = 28.2 bits (14), Expect = 6.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 188 catcgacttccagc 201
||||||||||||||
Sbjct: 188 catcgacttccagc 201
>ISOba2
Length = 1253
Score = 28.2 bits (14), Expect = 6.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 211 atgccgatccggcg 224
||||||||||||||
Sbjct: 530 atgccgatccggcg 517
>ISChy1
Length = 1728
Score = 28.2 bits (14), Expect = 6.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 107 cgagcgctggttct 120
||||||||||||||
Sbjct: 1499 cgagcgctggttct 1512
>ISPa21
Length = 1364
Score = 28.2 bits (14), Expect = 6.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 152 ggtgctgctgcatc 165
||||||||||||||
Sbjct: 276 ggtgctgctgcatc 289
>ISMav1
Length = 2536
Score = 28.2 bits (14), Expect = 6.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 149 gtcggtgctgctgc 162
||||||||||||||
Sbjct: 1396 gtcggtgctgctgc 1409
>IS466
Length = 1628
Score = 28.2 bits (14), Expect = 6.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 236 gcccgagaacgtcg 249
||||||||||||||
Sbjct: 1351 gcccgagaacgtcg 1364
>IS1612
Length = 2532
Score = 28.2 bits (14), Expect = 6.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 149 gtcggtgctgctgc 162
||||||||||||||
Sbjct: 1392 gtcggtgctgctgc 1405
>IS1547
Length = 1351
Score = 28.2 bits (14), Expect = 6.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 70 tgatcgccgacgtg 83
||||||||||||||
Sbjct: 708 tgatcgccgacgtg 695
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_88_length_333_cov_1.44531_ID_5348
(333 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISIde1 | ISL3 | Ideonella dechloratans | 36 | 0.027 | |
| ISBj12 | ISNCY | ISLbi1 | Bradyrhizobium japonicum | 30 | 1.7 |
| ISAde1 | IS66 | Anaeromyxobacter dehalogenans | 30 | 1.7 | |
| ISCARN75 | IS701 | Metagenomic data from CARNOULES | 30 | 1.7 | |
| ISGme8 | IS110 | Geobacter metallireducens | 30 | 1.7 | |
| ISXo1 | IS5 | IS5 | Xanthomonas oryzae | 30 | 1.7 |
| ISHall1 | IS200/IS605 | IS605 | Halostagnicola larsenii | 28 | 6.6 |
| ISHgi1 | IS200/IS605 | IS605 | Haloferax gibbonsii | 28 | 6.6 |
| ISCep1 | ISKra4 | ISAzba1 | Crinalium epipsammum | 28 | 6.6 |
| ISAtsp9 | ISNCY | ISMae2 | Arthrospira sp. | 28 | 6.6 |
| ISAzs2 | IS21 | Azospirillum sp. | 28 | 6.6 | |
| ISPna4 | IS5 | IS903 | Polaromonas naphthalenivorans | 28 | 6.6 |
| ISEc33 | IS630 | Escherichia coli | 28 | 6.6 | |
| ISPso3 | IS5 | IS5 | Paracoccus solventivorans | 28 | 6.6 |
| ISPmar3 | IS5 | IS5 | Paracoccus marcusii | 28 | 6.6 |
| ISBmu23 | IS5 | IS5 | Burkholderia multivorans | 28 | 6.6 |
| ISPaen2 | IS5 | IS5 | Paenibacillus sp. | 28 | 6.6 |
| ISAde2 | IS1182 | Anaeromyxobacter dehalogenans | 28 | 6.6 | |
| ISAfe12 | IS21 | Acidithiobacillus ferrooxidans | 28 | 6.6 | |
| ISMysp4 | IS481 | Mycobacterium sp. | 28 | 6.6 | |
| ISXfu2 | IS5 | IS5 | Xanthomonas fuscans | 28 | 6.6 |
| IS630 | IS630 | - | Shigella sonnei | 28 | 6.6 |
| IS1355 | IS5 | IS1031 | Methylobacterium dichloromethanicum | 28 | 6.6 |
>ISIde1
Length = 1448
Score = 36.2 bits (18), Expect = 0.027
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 194 gcgccggtgtcctcgacctcga 215
|||||||||| |||||||||||
Sbjct: 217 gcgccggtgtgctcgacctcga 196
>ISBj12
Length = 1743
Score = 30.2 bits (15), Expect = 1.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 186 gaatcccggcgccgg 200
|||||||||||||||
Sbjct: 590 gaatcccggcgccgg 576
>ISAde1
Length = 2957
Score = 30.2 bits (15), Expect = 1.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 96 gcacgatcggcaagc 110
|||||||||||||||
Sbjct: 1693 gcacgatcggcaagc 1707
>ISCARN75
Length = 1369
Score = 30.2 bits (15), Expect = 1.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 181 ctcgggaatcccggc 195
|||||||||||||||
Sbjct: 568 ctcgggaatcccggc 554
>ISGme8
Length = 1185
Score = 30.2 bits (15), Expect = 1.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 219 tggcaaattccgtgg 233
|||||||||||||||
Sbjct: 901 tggcaaattccgtgg 915
>ISXo1
Length = 1156
Score = 30.2 bits (15), Expect = 1.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 93 cgcgcacgatcggca 107
|||||||||||||||
Sbjct: 538 cgcgcacgatcggca 524
>ISHall1
Length = 1866
Score = 28.2 bits (14), Expect = 6.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 271 gtacttgatggcgt 284
||||||||||||||
Sbjct: 1409 gtacttgatggcgt 1396
>ISHgi1
Length = 1870
Score = 28.2 bits (14), Expect = 6.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 237 gagtgcgtgcggtc 250
||||||||||||||
Sbjct: 541 gagtgcgtgcggtc 528
Score = 28.2 bits (14), Expect = 6.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 271 gtacttgatggcgt 284
||||||||||||||
Sbjct: 1413 gtacttgatggcgt 1400
>ISCep1
Length = 2958
Score = 28.2 bits (14), Expect = 6.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 109 gcccagaccggagc 122
||||||||||||||
Sbjct: 1310 gcccagaccggagc 1323
>ISAtsp9
Length = 1421
Score = 28.2 bits (14), Expect = 6.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 161 aacacacgctcacg 174
||||||||||||||
Sbjct: 225 aacacacgctcacg 212
>ISAzs2
Length = 2609
Score = 28.2 bits (14), Expect = 6.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 59 agcgtcacggtggc 72
||||||||||||||
Sbjct: 1345 agcgtcacggtggc 1332
>ISPna4
Length = 1093
Score = 28.2 bits (14), Expect = 6.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 52 cgacttgagcgtca 65
||||||||||||||
Sbjct: 292 cgacttgagcgtca 279
>ISEc33
Length = 1153
Score = 28.2 bits (14), Expect = 6.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 1 atagctgcgcggaa 14
||||||||||||||
Sbjct: 2 atagctgcgcggaa 15
>ISPso3
Length = 1283
Score = 28.2 bits (14), Expect = 6.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 94 gcgcacgatcggca 107
||||||||||||||
Sbjct: 1010 gcgcacgatcggca 1023
>ISPmar3
Length = 1282
Score = 28.2 bits (14), Expect = 6.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 94 gcgcacgatcggca 107
||||||||||||||
Sbjct: 1010 gcgcacgatcggca 1023
>ISBmu23
Length = 1210
Score = 28.2 bits (14), Expect = 6.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 7 gcgcggaaagatca 20
||||||||||||||
Sbjct: 822 gcgcggaaagatca 835
>ISPaen2
Length = 1786
Score = 28.2 bits (14), Expect = 6.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 93 cgcgcacgatcggc 106
||||||||||||||
Sbjct: 1252 cgcgcacgatcggc 1239
>ISAde2
Length = 1498
Score = 28.2 bits (14), Expect = 6.6
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 183 cgggaatcccggcgccgg 200
||||| ||||||||||||
Sbjct: 1361 cgggactcccggcgccgg 1378
>ISAfe12
Length = 2660
Score = 28.2 bits (14), Expect = 6.6
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 105 gcaagcccagaccggagc 122
|||||||||||| |||||
Sbjct: 1596 gcaagcccagacaggagc 1579
>ISMysp4
Length = 1090
Score = 28.2 bits (14), Expect = 6.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 95 cgcacgatcggcaa 108
||||||||||||||
Sbjct: 580 cgcacgatcggcaa 593
>ISXfu2
Length = 1157
Score = 28.2 bits (14), Expect = 6.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 93 cgcgcacgatcggc 106
||||||||||||||
Sbjct: 538 cgcgcacgatcggc 525
>IS630
Length = 1153
Score = 28.2 bits (14), Expect = 6.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 1 atagctgcgcggaa 14
||||||||||||||
Sbjct: 2 atagctgcgcggaa 15
>IS1355
Length = 970
Score = 28.2 bits (14), Expect = 6.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 28 catcgtacccgtgc 41
||||||||||||||
Sbjct: 470 catcgtacccgtgc 457
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_89_length_332_cov_0.858824_ID_5350
(332 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISRel16 | IS21 | Rhizobium etli | 36 | 0.027 | |
| ISMme1 | ISAzo13 | Mesorhizobium metallidurans | 32 | 0.42 | |
| ISRer1 | IS1380 | Rhodococcus erythropolis | 32 | 0.42 | |
| TnXo19 | Tn3 | Xanthomonas oryzae | 30 | 1.7 | |
| ISMno16 | IS110 | IS1111 | Methylobacterium nodulans | 30 | 1.7 |
| ISNamo14 | IS630 | Natronomonas moolapensis | 30 | 1.7 | |
| ISNha7 | IS5 | Nitrobacter hamburgensis | 30 | 1.7 | |
| ISBrsp7 | IS5 | Bradyrhizobium sp. | 30 | 1.7 | |
| ISLsp4 | ISAzo13 | Leptospirillum sp. | 30 | 1.7 | |
| ISAar21 | IS4 | IS4 | Arthrobacter arilaitensis | 30 | 1.7 |
| ISMex37 | IS3 | IS150 | Methylobacterium extorquens | 30 | 1.7 |
| ISCARN24 | IS21 | Metagenomic data from CARNOULES | 30 | 1.7 | |
| ISGdi4 | IS630 | Gluconacetobacter diazotrophicus | 30 | 1.7 | |
| ISBmu6 | IS3 | IS150 | Burkholderia multivorans | 30 | 1.7 |
| ISPa21 | IS110 | IS1111 | Pseudomonas aeruginosa | 30 | 1.7 |
| ISSna1 | ISNCY | ISDol1 | Streptomyces natalensis | 28 | 6.6 |
| ISAs29 | IS21 | Aeromonas salmonicida | 28 | 6.6 | |
| ISBj3 | IS3 | IS150 | Bradyrhizobium japonicum | 28 | 6.6 |
| ISTni1 | ISKra4 | ISKra4 | Thioalkalivibrio nitratireducens | 28 | 6.6 |
| ISTco4 | ISLre2 | Thermobacillus composti | 28 | 6.6 | |
| ISBast1 | IS256 | IS1249 | Bifidobacterium asteroides | 28 | 6.6 |
| ISTni2 | IS481 | Thioalkalivibrio nitratireducens | 28 | 6.6 | |
| ISNml4 | IS256 | Nakamurella multipartita | 28 | 6.6 | |
| ISPa38 | Tn3 | Pseudomonas aeruginosa | 28 | 6.6 | |
| ISAzs31 | IS630 | Azospirillum sp. | 28 | 6.6 | |
| ISAzs20 | IS66 | Azospirillum sp. | 28 | 6.6 | |
| ISStsp6 | IS5 | ISL2 | Streptomyces sp | 28 | 6.6 |
| ISNml3 | IS1182 | Nakamurella multipartita | 28 | 6.6 | |
| ISMtsp9 | IS110 | Methylobacterium sp. | 28 | 6.6 | |
| ISVsp9 | IS1182 | Verrucomicrobium spinosum | 28 | 6.6 | |
| ISRsp18 | IS5 | IS5 | Rhizobium sp. | 28 | 6.6 |
| ISMtsp5 | IS3 | IS2 | Methylobacterium sp. | 28 | 6.6 |
| ISRhru4 | IS256 | Rhodospirillum rubrum | 28 | 6.6 | |
| ISMno23 | IS91 | Methylobacterium nodulans | 28 | 6.6 | |
| ISMno10 | IS1182 | Methylobacterium nodulans | 28 | 6.6 | |
| ISMno7 | IS110 | Methylobacterium nodulans | 28 | 6.6 | |
| ISPfr9 | IS30 | Propionibacterium freudenreichii | 28 | 6.6 | |
| ISArsp6 | Tn3 | Arthrobacter sp. | 28 | 6.6 | |
| ISCef6 | IS1380 | Corynebacterium efficiens | 28 | 6.6 | |
| ISUnCu12 | IS1380 | Uncultured marine microorganism | 28 | 6.6 | |
| ISAzba6 | IS630 | Azospirillum brasilense | 28 | 6.6 | |
| ISMdi27 | IS21 | Methylobacterium dichloromethanicum | 28 | 6.6 | |
| ISMdi8 | IS481 | Methylobacterium dichloromethanicum | 28 | 6.6 | |
| ISMdi2 | ISL3 | Methylobacterium dichloromethanicum | 28 | 6.6 | |
| ISMex36 | IS1182 | Methylobacterium extorquens | 28 | 6.6 | |
| ISMex22 | Tn3 | Methylobacterium extorquens | 28 | 6.6 | |
| ISThsp9 | Tn3 | Thiomonas sp. | 28 | 6.6 | |
| ISCARN26 | IS110 | Metagenomic data from CARNOULES | 28 | 6.6 | |
| ISCARN15 | IS66 | Metagenomic data from CARNOULES | 28 | 6.6 | |
| ISFsp10 | IS66 | ISBst12 | Frankia sp. | 28 | 6.6 |
| ISHne3 | IS110 | Hyphomonas neptunium | 28 | 6.6 | |
| ISSsp4 | IS21 | Sphingomonas sp. | 28 | 6.6 | |
| ISAzo8 | ISAs1 | Azoarcus sp. | 28 | 6.6 | |
| ISPsy20 | IS21 | Pseudomonas syringae | 28 | 6.6 | |
| ISRhosp6 | IS481 | Rhodococcus sp. | 28 | 6.6 | |
| ISBad2 | IS3 | IS150 | Bifidobacterium adolescentis | 28 | 6.6 |
| ISRhba1 | IS1595 | ISNwi1 | Rhodobacterales bacterium | 28 | 6.6 |
| ISSto5 | IS110 | Sulfolobus tokodaii | 28 | 6.6 |
>ISRel16
Length = 2597
Score = 36.2 bits (18), Expect = 0.027
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 214 cgagatcatcccggaatc 231
||||||||||||||||||
Sbjct: 2530 cgagatcatcccggaatc 2547
>ISMme1
Length = 1324
Score = 32.2 bits (16), Expect = 0.42
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 175 ggcgctggcggccggc 190
||||||||||||||||
Sbjct: 178 ggcgctggcggccggc 193
Score = 28.2 bits (14), Expect = 6.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 175 ggcgctggcggccg 188
||||||||||||||
Sbjct: 613 ggcgctggcggccg 626
>ISRer1
Length = 1687
Score = 32.2 bits (16), Expect = 0.42
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 301 cgacaccgcgctcgcc 316
||||||||||||||||
Sbjct: 448 cgacaccgcgctcgcc 463
>TnXo19
Length = 18767
Score = 30.2 bits (15), Expect = 1.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 113 gtggctgccgtgctc 127
|||||||||||||||
Sbjct: 7499 gtggctgccgtgctc 7513
>ISMno16
Length = 1404
Score = 30.2 bits (15), Expect = 1.7
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 178 gctggcggccggcgcgatg 196
||||| |||||||||||||
Sbjct: 908 gctggtggccggcgcgatg 926
>ISNamo14
Length = 1067
Score = 30.2 bits (15), Expect = 1.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 294 tgctgctcgacaccg 308
|||||||||||||||
Sbjct: 167 tgctgctcgacaccg 153
>ISNha7
Length = 1302
Score = 30.2 bits (15), Expect = 1.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 173 ctggcgctggcggcc 187
|||||||||||||||
Sbjct: 1127 ctggcgctggcggcc 1141
>ISBrsp7
Length = 1292
Score = 30.2 bits (15), Expect = 1.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 173 ctggcgctggcggcc 187
|||||||||||||||
Sbjct: 1127 ctggcgctggcggcc 1141
>ISLsp4
Length = 1295
Score = 30.2 bits (15), Expect = 1.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 101 ctggtcgagccggtg 115
|||||||||||||||
Sbjct: 344 ctggtcgagccggtg 358
>ISAar21
Length = 1396
Score = 30.2 bits (15), Expect = 1.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 33 tggccctggccttgc 47
|||||||||||||||
Sbjct: 221 tggccctggccttgc 235
>ISMex37
Length = 1510
Score = 30.2 bits (15), Expect = 1.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 172 tctggcgctggcggc 186
|||||||||||||||
Sbjct: 1017 tctggcgctggcggc 1031
>ISCARN24
Length = 2778
Score = 30.2 bits (15), Expect = 1.7
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 236 cgcagcggccacgagggcg 254
||||||| |||||||||||
Sbjct: 1351 cgcagcgcccacgagggcg 1369
>ISGdi4
Length = 1176
Score = 30.2 bits (15), Expect = 1.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 172 tctggcgctggcggc 186
|||||||||||||||
Sbjct: 198 tctggcgctggcggc 212
>ISBmu6
Length = 1445
Score = 30.2 bits (15), Expect = 1.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 241 cggccacgagggcgc 255
|||||||||||||||
Sbjct: 382 cggccacgagggcgc 396
>ISPa21
Length = 1364
Score = 30.2 bits (15), Expect = 1.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 41 gccttgcgcggcgcg 55
|||||||||||||||
Sbjct: 577 gccttgcgcggcgcg 591
>ISSna1
Length = 1560
Score = 28.2 bits (14), Expect = 6.6
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 313 cgcctgagcgccgctgcg 330
|||||| |||||||||||
Sbjct: 462 cgcctgggcgccgctgcg 445
>ISAs29
Length = 2613
Score = 28.2 bits (14), Expect = 6.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 119 gccgtgctcggtgc 132
||||||||||||||
Sbjct: 735 gccgtgctcggtgc 748
>ISBj3
Length = 1284
Score = 28.2 bits (14), Expect = 6.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 251 ggcgcagcatcaaa 264
||||||||||||||
Sbjct: 1045 ggcgcagcatcaaa 1058
>ISTni1
Length = 2377
Score = 28.2 bits (14), Expect = 6.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 291 tgatgctgctcgac 304
||||||||||||||
Sbjct: 498 tgatgctgctcgac 485
>ISTco4
Length = 1577
Score = 28.2 bits (14), Expect = 6.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 36 ccctggccttgcgc 49
||||||||||||||
Sbjct: 591 ccctggccttgcgc 578
>ISBast1
Length = 1357
Score = 28.2 bits (14), Expect = 6.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 45 tgcgcggcgcgggc 58
||||||||||||||
Sbjct: 288 tgcgcggcgcgggc 275
>ISTni2
Length = 3451
Score = 28.2 bits (14), Expect = 6.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 296 ctgctcgacaccgc 309
||||||||||||||
Sbjct: 2861 ctgctcgacaccgc 2874
>ISNml4
Length = 1462
Score = 28.2 bits (14), Expect = 6.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 60 accgggccgggacg 73
||||||||||||||
Sbjct: 390 accgggccgggacg 403
>ISPa38
Length = 6455
Score = 28.2 bits (14), Expect = 6.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 151 ggccgtcgccctgc 164
||||||||||||||
Sbjct: 5993 ggccgtcgccctgc 6006
>ISAzs31
Length = 1160
Score = 28.2 bits (14), Expect = 6.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 170 ggtctggcgctggc 183
||||||||||||||
Sbjct: 234 ggtctggcgctggc 247
>ISAzs20
Length = 2811
Score = 28.2 bits (14), Expect = 6.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 82 ggtgggggcggcct 95
||||||||||||||
Sbjct: 1594 ggtgggggcggcct 1607
>ISStsp6
Length = 1476
Score = 28.2 bits (14), Expect = 6.6
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 100 tctggtcgagccggtggc 117
||||||||||||| ||||
Sbjct: 83 tctggtcgagccgctggc 100
>ISNml3
Length = 1798
Score = 28.2 bits (14), Expect = 6.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 265 gggcctgctgatcg 278
||||||||||||||
Sbjct: 679 gggcctgctgatcg 666
>ISMtsp9
Length = 1456
Score = 28.2 bits (14), Expect = 6.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 177 cgctggcggccggc 190
||||||||||||||
Sbjct: 937 cgctggcggccggc 950
>ISVsp9
Length = 1730
Score = 28.2 bits (14), Expect = 6.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 109 gccggtggctgccg 122
||||||||||||||
Sbjct: 224 gccggtggctgccg 211
>ISRsp18
Length = 1560
Score = 28.2 bits (14), Expect = 6.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 100 tctggtcgagccgg 113
||||||||||||||
Sbjct: 246 tctggtcgagccgg 233
>ISMtsp5
Length = 1347
Score = 28.2 bits (14), Expect = 6.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 60 accgggccgggacg 73
||||||||||||||
Sbjct: 559 accgggccgggacg 546
>ISRhru4
Length = 1411
Score = 28.2 bits (14), Expect = 6.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 61 ccgggccgggacgg 74
||||||||||||||
Sbjct: 351 ccgggccgggacgg 364
>ISMno23
Length = 2271
Score = 28.2 bits (14), Expect = 6.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 183 cggccggcgcgatg 196
||||||||||||||
Sbjct: 1632 cggccggcgcgatg 1619
>ISMno10
Length = 1749
Score = 28.2 bits (14), Expect = 6.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 175 ggcgctggcggccg 188
||||||||||||||
Sbjct: 1465 ggcgctggcggccg 1478
>ISMno7
Length = 1147
Score = 28.2 bits (14), Expect = 6.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 241 cggccacgagggcg 254
||||||||||||||
Sbjct: 1050 cggccacgagggcg 1037
>ISPfr9
Length = 1484
Score = 28.2 bits (14), Expect = 6.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 303 acaccgcgctcgcc 316
||||||||||||||
Sbjct: 1122 acaccgcgctcgcc 1135
>ISArsp6
Length = 26712
Score = 28.2 bits (14), Expect = 6.6
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 24 ggctgttcgtggccctgg 41
||||| ||||||||||||
Sbjct: 17946 ggctgctcgtggccctgg 17929
Score = 28.2 bits (14), Expect = 6.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 315 cctgagcgccgctg 328
||||||||||||||
Sbjct: 21899 cctgagcgccgctg 21886
>ISCef6
Length = 1684
Score = 28.2 bits (14), Expect = 6.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 30 tcgtggccctggcc 43
||||||||||||||
Sbjct: 1372 tcgtggccctggcc 1359
>ISUnCu12
Length = 1597
Score = 28.2 bits (14), Expect = 6.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 56 ggctaccgggccgg 69
||||||||||||||
Sbjct: 995 ggctaccgggccgg 1008
>ISAzba6
Length = 1138
Score = 28.2 bits (14), Expect = 6.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 170 ggtctggcgctggc 183
||||||||||||||
Sbjct: 234 ggtctggcgctggc 247
>ISMdi27
Length = 2476
Score = 28.2 bits (14), Expect = 6.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 104 gtcgagccggtggc 117
||||||||||||||
Sbjct: 782 gtcgagccggtggc 795
>ISMdi8
Length = 1002
Score = 28.2 bits (14), Expect = 6.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 24 ggctgttcgtggcc 37
||||||||||||||
Sbjct: 505 ggctgttcgtggcc 518
>ISMdi2
Length = 1689
Score = 28.2 bits (14), Expect = 6.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 102 tggtcgagccggtg 115
||||||||||||||
Sbjct: 1229 tggtcgagccggtg 1216
>ISMex36
Length = 1467
Score = 28.2 bits (14), Expect = 6.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 102 tggtcgagccggtg 115
||||||||||||||
Sbjct: 1249 tggtcgagccggtg 1262
>ISMex22
Length = 3864
Score = 28.2 bits (14), Expect = 6.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 150 cggccgtcgccctg 163
||||||||||||||
Sbjct: 2543 cggccgtcgccctg 2556
>ISThsp9
Length = 6215
Score = 28.2 bits (14), Expect = 6.6
Identities = 20/22 (90%)
Strand = Plus / Plus
Query: 44 ttgcgcggcgcgggctaccggg 65
|||||| ||| |||||||||||
Sbjct: 4654 ttgcgcagcgagggctaccggg 4675
>ISCARN26
Length = 1214
Score = 28.2 bits (14), Expect = 6.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 291 tgatgctgctcgac 304
||||||||||||||
Sbjct: 800 tgatgctgctcgac 787
>ISCARN15
Length = 2427
Score = 28.2 bits (14), Expect = 6.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 42 ccttgcgcggcgcg 55
||||||||||||||
Sbjct: 276 ccttgcgcggcgcg 263
>ISFsp10
Length = 1713
Score = 28.2 bits (14), Expect = 6.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 46 gcgcggcgcgggct 59
||||||||||||||
Sbjct: 791 gcgcggcgcgggct 778
>ISHne3
Length = 1172
Score = 28.2 bits (14), Expect = 6.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 241 cggccacgagggcg 254
||||||||||||||
Sbjct: 1062 cggccacgagggcg 1049
>ISSsp4
Length = 2558
Score = 28.2 bits (14), Expect = 6.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 104 gtcgagccggtggc 117
||||||||||||||
Sbjct: 801 gtcgagccggtggc 814
>ISAzo8
Length = 1261
Score = 28.2 bits (14), Expect = 6.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 147 tctcggccgtcgcc 160
||||||||||||||
Sbjct: 571 tctcggccgtcgcc 558
>ISPsy20
Length = 2572
Score = 28.2 bits (14), Expect = 6.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 266 ggcctgctgatcgg 279
||||||||||||||
Sbjct: 521 ggcctgctgatcgg 534
>ISRhosp6
Length = 1091
Score = 28.2 bits (14), Expect = 6.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 118 tgccgtgctcggtg 131
||||||||||||||
Sbjct: 788 tgccgtgctcggtg 775
>ISBad2
Length = 1470
Score = 28.2 bits (14), Expect = 6.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 102 tggtcgagccggtg 115
||||||||||||||
Sbjct: 612 tggtcgagccggtg 599
>ISRhba1
Length = 2457
Score = 28.2 bits (14), Expect = 6.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 50 ggcgcgggctaccg 63
||||||||||||||
Sbjct: 735 ggcgcgggctaccg 748
>ISSto5
Length = 1191
Score = 28.2 bits (14), Expect = 6.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 255 cagcatcaaagggc 268
||||||||||||||
Sbjct: 1099 cagcatcaaagggc 1086
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_90_length_332_cov_0.839216_ID_5352
(332 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISPa43 | Tn3 | Pseudomonas aeruginosa | 32 | 0.42 | |
| IS1452 | IS701 | - | Acetobacter pasteurianus | 32 | 0.42 |
| ISCfu1 | ISAzo13 | Cystobacter fuscus | 30 | 1.7 | |
| ISMme1 | ISAzo13 | Mesorhizobium metallidurans | 30 | 1.7 | |
| ISPkr1 | IS21 | Paracoccus koreensis | 30 | 1.7 | |
| ISJsp2 | IS5 | IS903 | Janthinobacterium sp. | 30 | 1.7 |
| ISBm3 | IS481 | - | Brucella melitensis | 30 | 1.7 |
| ISHmu2 | IS6 | Halomicrobium mukohataei | 28 | 6.6 | |
| ISNamo13 | IS6 | Natronomonas moolapensis | 28 | 6.6 | |
| ISAzs18 | IS66 | Azospirillum sp. | 28 | 6.6 | |
| ISBuce2 | IS5 | Burkholderia cepacia | 28 | 6.6 | |
| ISDisp1 | IS5 | Diaphorobacter sp. | 28 | 6.6 | |
| ISMno13 | IS66 | Methylobacterium nodulans | 28 | 6.6 | |
| ISHoc1 | IS1380 | Haliangium ochraceum | 28 | 6.6 | |
| ISPph3 | IS1380 | Pelodictyon phaeoclathratiforme | 28 | 6.6 | |
| ISAnsp12 | IS66 | Anaeromyxobacter sp. | 28 | 6.6 | |
| ISThsp9 | Tn3 | Thiomonas sp. | 28 | 6.6 | |
| ISAfe12 | IS21 | Acidithiobacillus ferrooxidans | 28 | 6.6 | |
| ISBrsp6 | IS66 | Bradyrhizobium sp. | 28 | 6.6 | |
| ISPa16 | IS5 | IS5 | Pseudomonas aeruginosa | 28 | 6.6 |
| ISEc20 | IS110 | Escherichia coli | 28 | 6.6 | |
| ISRel1 | IS4 | IS4Sa | Rhizobium etli | 28 | 6.6 |
| ISApu2 | IS4 | ISH8 | Aeromonas punctata | 28 | 6.6 |
| ISAva1 | IS4 | ISH8 | Anabaena variabilis | 28 | 6.6 |
| ISPpu18 | IS5 | IS5 | Pseudomonas putida | 28 | 6.6 |
| ISSfl4 | IS110 | - | Shigella flexneri | 28 | 6.6 |
| ISRsp1 | IS66 | - | Rhizobium sp. | 28 | 6.6 |
| ISRso19 | IS21 | - | Ralstonia solanacearum | 28 | 6.6 |
| ISPpu3 | IS630 | - | Pseudomonas putida | 28 | 6.6 |
| ISAav3 | IS5 | - | Acidovorax avenae | 28 | 6.6 |
| ISPsy6 | IS1182 | Pseudomonas syringae | 28 | 6.6 | |
| IS1600 | IS21 | - | Ralstonia eutropha | 28 | 6.6 |
>ISPa43
Length = 19903
Score = 32.2 bits (16), Expect = 0.42
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 212 ggatcaccttgcgcag 227
||||||||||||||||
Sbjct: 19514 ggatcaccttgcgcag 19499
>IS1452
Length = 1411
Score = 32.2 bits (16), Expect = 0.42
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 258 gaacagcggcgccatc 273
||||||||||||||||
Sbjct: 147 gaacagcggcgccatc 132
>ISCfu1
Length = 1289
Score = 30.2 bits (15), Expect = 1.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 261 cagcggcgccatcgg 275
|||||||||||||||
Sbjct: 387 cagcggcgccatcgg 373
>ISMme1
Length = 1324
Score = 30.2 bits (15), Expect = 1.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 261 cagcggcgccatcgg 275
|||||||||||||||
Sbjct: 418 cagcggcgccatcgg 404
>ISPkr1
Length = 2469
Score = 30.2 bits (15), Expect = 1.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 212 ggatcaccttgcgca 226
|||||||||||||||
Sbjct: 230 ggatcaccttgcgca 216
>ISJsp2
Length = 1045
Score = 30.2 bits (15), Expect = 1.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 80 gggcgcagccagacg 94
|||||||||||||||
Sbjct: 194 gggcgcagccagacg 208
>ISBm3
Length = 1022
Score = 30.2 bits (15), Expect = 1.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 1 gccatggaaaccggc 15
|||||||||||||||
Sbjct: 360 gccatggaaaccggc 374
>ISHmu2
Length = 697
Score = 28.2 bits (14), Expect = 6.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 156 gatctgcagcagca 169
||||||||||||||
Sbjct: 360 gatctgcagcagca 347
>ISNamo13
Length = 745
Score = 28.2 bits (14), Expect = 6.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 103 gcgagcatcatccc 116
||||||||||||||
Sbjct: 67 gcgagcatcatccc 54
>ISAzs18
Length = 2633
Score = 28.2 bits (14), Expect = 6.6
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 261 cagcggcgccatcggcgc 278
||||||||||||| ||||
Sbjct: 1713 cagcggcgccatcagcgc 1696
>ISBuce2
Length = 1345
Score = 28.2 bits (14), Expect = 6.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 156 gatctgcagcagca 169
||||||||||||||
Sbjct: 313 gatctgcagcagca 300
>ISDisp1
Length = 1321
Score = 28.2 bits (14), Expect = 6.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 156 gatctgcagcagca 169
||||||||||||||
Sbjct: 292 gatctgcagcagca 279
>ISMno13
Length = 2459
Score = 28.2 bits (14), Expect = 6.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 305 ccgagatcagcacg 318
||||||||||||||
Sbjct: 344 ccgagatcagcacg 331
>ISHoc1
Length = 1711
Score = 28.2 bits (14), Expect = 6.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 162 cagcagcagcaaca 175
||||||||||||||
Sbjct: 331 cagcagcagcaaca 318
>ISPph3
Length = 1810
Score = 28.2 bits (14), Expect = 6.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 47 tgcgggctgatcaa 60
||||||||||||||
Sbjct: 554 tgcgggctgatcaa 541
>ISAnsp12
Length = 2926
Score = 28.2 bits (14), Expect = 6.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 300 cacggccgagatca 313
||||||||||||||
Sbjct: 1556 cacggccgagatca 1569
>ISThsp9
Length = 6215
Score = 28.2 bits (14), Expect = 6.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 267 cgccatcggcgcat 280
||||||||||||||
Sbjct: 5630 cgccatcggcgcat 5617
>ISAfe12
Length = 2660
Score = 28.2 bits (14), Expect = 6.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 88 ccagacgctcatcg 101
||||||||||||||
Sbjct: 1928 ccagacgctcatcg 1915
>ISBrsp6
Length = 3112
Score = 28.2 bits (14), Expect = 6.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 213 gatcaccttgcgca 226
||||||||||||||
Sbjct: 2104 gatcaccttgcgca 2117
>ISPa16
Length = 1192
Score = 28.2 bits (14), Expect = 6.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 232 cgcaggaaaggtgc 245
||||||||||||||
Sbjct: 1025 cgcaggaaaggtgc 1038
>ISEc20
Length = 1459
Score = 28.2 bits (14), Expect = 6.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 51 ggctgatcaacaac 64
||||||||||||||
Sbjct: 431 ggctgatcaacaac 418
>ISRel1
Length = 1273
Score = 28.2 bits (14), Expect = 6.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 157 atctgcagcagcag 170
||||||||||||||
Sbjct: 1098 atctgcagcagcag 1085
>ISApu2
Length = 1388
Score = 28.2 bits (14), Expect = 6.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 102 ggcgagcatcatcc 115
||||||||||||||
Sbjct: 1225 ggcgagcatcatcc 1238
>ISAva1
Length = 1617
Score = 28.2 bits (14), Expect = 6.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 53 ctgatcaacaacga 66
||||||||||||||
Sbjct: 1525 ctgatcaacaacga 1538
>ISPpu18
Length = 1192
Score = 28.2 bits (14), Expect = 6.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 232 cgcaggaaaggtgc 245
||||||||||||||
Sbjct: 1025 cgcaggaaaggtgc 1038
>ISSfl4
Length = 1451
Score = 28.2 bits (14), Expect = 6.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 51 ggctgatcaacaac 64
||||||||||||||
Sbjct: 431 ggctgatcaacaac 418
>ISRsp1
Length = 3481
Score = 28.2 bits (14), Expect = 6.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 232 cgcaggaaaggtgc 245
||||||||||||||
Sbjct: 2915 cgcaggaaaggtgc 2902
>ISRso19
Length = 1956
Score = 28.2 bits (14), Expect = 6.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 177 aatcagcggcgaga 190
||||||||||||||
Sbjct: 1798 aatcagcggcgaga 1811
>ISPpu3
Length = 1135
Score = 28.2 bits (14), Expect = 6.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 165 cagcagcaacagaa 178
||||||||||||||
Sbjct: 154 cagcagcaacagaa 141
>ISAav3
Length = 1321
Score = 28.2 bits (14), Expect = 6.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 157 atctgcagcagcag 170
||||||||||||||
Sbjct: 291 atctgcagcagcag 278
>ISPsy6
Length = 1603
Score = 28.2 bits (14), Expect = 6.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 204 gatcggcgggatca 217
||||||||||||||
Sbjct: 270 gatcggcgggatca 257
>IS1600
Length = 2520
Score = 28.2 bits (14), Expect = 6.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 261 cagcggcgccatcg 274
||||||||||||||
Sbjct: 1669 cagcggcgccatcg 1682
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_91_length_329_cov_1.15476_ID_5354
(329 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISStu2 | ISAzo13 | Streptomyces turgidiscabies | 30 | 1.7 | |
| ISAzs5 | ISAs1 | Azospirillum sp. | 30 | 1.7 | |
| ISCARN106 | IS630 | Metagenomic data from CARNOULES | 30 | 1.7 | |
| ISVei5 | IS5 | IS5 | Verminephrobacter eiseniae | 30 | 1.7 |
| ISMno1 | ISAs1 | Methylobacterium nodulans | 30 | 1.7 | |
| ISPepr2 | IS1595 | ISNwi1 | Pelobacter propionicus | 30 | 1.7 |
| IS66 | IS66 | Agrobacterium tumefaciens | 30 | 1.7 | |
| ISHalsp1 | IS200/IS605 | IS1341 | Halorubrum sp. | 28 | 6.5 |
| ISNaoc5 | IS200/IS605 | IS1341 | Natronococcus occultus | 28 | 6.5 |
| ISPa119 | IS110 | IS1111 | Pseudomonas aeruginosa | 28 | 6.5 |
| ISHalh1 | IS200/IS605 | IS1341 | Halorubrum halophilum | 28 | 6.5 |
| ISHalp1 | IS200/IS605 | IS1341 | Halosarcina pallida | 28 | 6.5 |
| ISNhu2 | IS200/IS605 | IS1341 | Natrialba hulunbeirensis | 28 | 6.5 |
| ISHna1 | IS200/IS605 | IS1341 | Haloplanus natans | 28 | 6.5 |
| ISHal2 | IS200/IS605 | IS1341 | Haloferax alexandrinus | 28 | 6.5 |
| ISHaar1 | IS200/IS605 | IS1341 | Halorubrum arcis | 28 | 6.5 |
| ISHsi2 | IS200/IS605 | IS605 | Haloarcula sinaiiensis | 28 | 6.5 |
| ISHarch10 | IS200/IS605 | IS1341 | Halophilic archaeon | 28 | 6.5 |
| ISHarch9 | IS200/IS605 | IS1341 | Halophilic archaeon | 28 | 6.5 |
| ISBj2 | IS5 | IS427 | Bradyrhizobium japonicum | 28 | 6.5 |
| ISMpr2 | ISKra4 | ISKra4 | Moorea producens | 28 | 6.5 |
| ISCasp3 | ISKra4 | ISKra4 | Calothrix sp. | 28 | 6.5 |
| ISHvo12 | IS4 | ISH8 | Haloferax volcanii | 28 | 6.5 |
| ISKra3 | ISAzo13 | Ktedonobacter racemifer | 28 | 6.5 | |
| ISPa40 | Tn3 | Pseudomonas aeruginosa | 28 | 6.5 | |
| ISNph13 | IS200/IS605 | IS1341 | Natronomonas pharaonis | 28 | 6.5 |
| ISRme6 | IS5 | IS427 | Ralstonia metallidurans | 28 | 6.5 |
| ISNph20 | IS200/IS605 | IS1341 | Natronomonas pharaonis | 28 | 6.5 |
| ISLar6 | ISNCY | ISDol1 | Lentisphaera araneosa | 28 | 6.5 |
| ISMno38 | IS1182 | Methylobacterium nodulans | 28 | 6.5 | |
| ISMno30 | ISL3 | Methylobacterium nodulans | 28 | 6.5 | |
| ISBaps1 | IS66 | Bacillus pseudomycoides | 28 | 6.5 | |
| ISMno13 | IS66 | Methylobacterium nodulans | 28 | 6.5 | |
| ISAtu7 | IS110 | Agrobacterium tumefaciens | 28 | 6.5 | |
| ISMdi2 | ISL3 | Methylobacterium dichloromethanicum | 28 | 6.5 | |
| ISAnsp5 | IS21 | Anaeromyxobacter sp. | 28 | 6.5 | |
| ISCARN103 | IS1182 | Metagenomic data from CARNOULES | 28 | 6.5 | |
| ISCARN91 | IS110 | IS1111 | Metagenomic data from CARNOULES | 28 | 6.5 |
| ISAzca2 | IS66 | Azorhizobium caulinodans | 28 | 6.5 | |
| ISAli18 | ISL3 | Azospirillum lipoferum | 28 | 6.5 | |
| ISGur15 | IS21 | Geobacter uraniumreducens | 28 | 6.5 | |
| ISMyma5 | IS481 | - | Mycobacterium marinum | 28 | 6.5 |
| ISAzvi2 | IS110 | IS1111 | Azotobacter vinelandii | 28 | 6.5 |
| IS5075 | IS110 | IS1111 | Escherichia coli | 28 | 6.5 |
| ISJp4 | IS5 | IS427 | Ralstonia eutropha | 28 | 6.5 |
| IS866 | IS66 | - | Agrobacterium tumefaciens | 28 | 6.5 |
>ISStu2
Length = 1760
Score = 30.2 bits (15), Expect = 1.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 60 gccggtgtcgagttc 74
|||||||||||||||
Sbjct: 1164 gccggtgtcgagttc 1150
>ISAzs5
Length = 1333
Score = 30.2 bits (15), Expect = 1.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 112 ttctggcggtgtgcg 126
|||||||||||||||
Sbjct: 210 ttctggcggtgtgcg 224
>ISCARN106
Length = 1148
Score = 30.2 bits (15), Expect = 1.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 246 cggggctgatcccgc 260
|||||||||||||||
Sbjct: 315 cggggctgatcccgc 301
>ISVei5
Length = 1620
Score = 30.2 bits (15), Expect = 1.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 57 gaggccggtgtcgag 71
|||||||||||||||
Sbjct: 537 gaggccggtgtcgag 551
>ISMno1
Length = 1218
Score = 30.2 bits (15), Expect = 1.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 283 atcatgccgctcgtc 297
|||||||||||||||
Sbjct: 90 atcatgccgctcgtc 76
>ISPepr2
Length = 1081
Score = 30.2 bits (15), Expect = 1.7
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 224 gttcaagaatggcat 238
|||||||||||||||
Sbjct: 825 gttcaagaatggcat 811
>IS66
Length = 2556
Score = 30.2 bits (15), Expect = 1.7
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 287 tgccgctcgtcgaca 301
|||||||||||||||
Sbjct: 2128 tgccgctcgtcgaca 2142
>ISHalsp1
Length = 1584
Score = 28.2 bits (14), Expect = 6.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 65 tgtcgagttcgaag 78
||||||||||||||
Sbjct: 689 tgtcgagttcgaag 676
>ISNaoc5
Length = 1483
Score = 28.2 bits (14), Expect = 6.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 65 tgtcgagttcgaag 78
||||||||||||||
Sbjct: 519 tgtcgagttcgaag 506
>ISPa119
Length = 1378
Score = 28.2 bits (14), Expect = 6.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 19 tcgagcttgcgcac 32
||||||||||||||
Sbjct: 705 tcgagcttgcgcac 692
>ISHalh1
Length = 1470
Score = 28.2 bits (14), Expect = 6.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 65 tgtcgagttcgaag 78
||||||||||||||
Sbjct: 575 tgtcgagttcgaag 562
>ISHalp1
Length = 1448
Score = 28.2 bits (14), Expect = 6.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 65 tgtcgagttcgaag 78
||||||||||||||
Sbjct: 513 tgtcgagttcgaag 500
>ISNhu2
Length = 1433
Score = 28.2 bits (14), Expect = 6.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 65 tgtcgagttcgaag 78
||||||||||||||
Sbjct: 522 tgtcgagttcgaag 509
>ISHna1
Length = 1456
Score = 28.2 bits (14), Expect = 6.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 65 tgtcgagttcgaag 78
||||||||||||||
Sbjct: 524 tgtcgagttcgaag 511
>ISHal2
Length = 1447
Score = 28.2 bits (14), Expect = 6.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 65 tgtcgagttcgaag 78
||||||||||||||
Sbjct: 515 tgtcgagttcgaag 502
>ISHaar1
Length = 1590
Score = 28.2 bits (14), Expect = 6.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 65 tgtcgagttcgaag 78
||||||||||||||
Sbjct: 674 tgtcgagttcgaag 661
>ISHsi2
Length = 1833
Score = 28.2 bits (14), Expect = 6.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 65 tgtcgagttcgaag 78
||||||||||||||
Sbjct: 941 tgtcgagttcgaag 928
>ISHarch10
Length = 1430
Score = 28.2 bits (14), Expect = 6.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 65 tgtcgagttcgaag 78
||||||||||||||
Sbjct: 519 tgtcgagttcgaag 506
>ISHarch9
Length = 1429
Score = 28.2 bits (14), Expect = 6.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 65 tgtcgagttcgaag 78
||||||||||||||
Sbjct: 518 tgtcgagttcgaag 505
>ISBj2
Length = 830
Score = 28.2 bits (14), Expect = 6.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 169 ggtgcgcaatcttc 182
||||||||||||||
Sbjct: 285 ggtgcgcaatcttc 298
>ISMpr2
Length = 1735
Score = 28.2 bits (14), Expect = 6.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 301 attcatgtgattga 314
||||||||||||||
Sbjct: 1161 attcatgtgattga 1174
>ISCasp3
Length = 1734
Score = 28.2 bits (14), Expect = 6.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 301 attcatgtgattga 314
||||||||||||||
Sbjct: 1163 attcatgtgattga 1176
>ISHvo12
Length = 1395
Score = 28.2 bits (14), Expect = 6.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 189 tccccacgcggtct 202
||||||||||||||
Sbjct: 77 tccccacgcggtct 64
>ISKra3
Length = 1287
Score = 28.2 bits (14), Expect = 6.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 22 agcttgcgcacgct 35
||||||||||||||
Sbjct: 405 agcttgcgcacgct 392
>ISPa40
Length = 6592
Score = 28.2 bits (14), Expect = 6.5
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 14 gcggctcgagcttgcgca 31
|||||| |||||||||||
Sbjct: 2399 gcggctggagcttgcgca 2416
>ISNph13
Length = 1429
Score = 28.2 bits (14), Expect = 6.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 65 tgtcgagttcgaag 78
||||||||||||||
Sbjct: 519 tgtcgagttcgaag 506
>ISRme6
Length = 913
Score = 28.2 bits (14), Expect = 6.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 287 tgccgctcgtcgac 300
||||||||||||||
Sbjct: 564 tgccgctcgtcgac 577
>ISNph20
Length = 1624
Score = 28.2 bits (14), Expect = 6.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 65 tgtcgagttcgaag 78
||||||||||||||
Sbjct: 732 tgtcgagttcgaag 719
>ISLar6
Length = 1591
Score = 28.2 bits (14), Expect = 6.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 173 cgcaatcttcagcg 186
||||||||||||||
Sbjct: 213 cgcaatcttcagcg 200
>ISMno38
Length = 1466
Score = 28.2 bits (14), Expect = 6.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 287 tgccgctcgtcgac 300
||||||||||||||
Sbjct: 988 tgccgctcgtcgac 1001
>ISMno30
Length = 1773
Score = 28.2 bits (14), Expect = 6.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 207 gcgccggtgcgcgc 220
||||||||||||||
Sbjct: 417 gcgccggtgcgcgc 430
>ISBaps1
Length = 2424
Score = 28.2 bits (14), Expect = 6.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 84 gaaacggaagatca 97
||||||||||||||
Sbjct: 226 gaaacggaagatca 239
>ISMno13
Length = 2459
Score = 28.2 bits (14), Expect = 6.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 63 ggtgtcgagttcga 76
||||||||||||||
Sbjct: 2191 ggtgtcgagttcga 2178
>ISAtu7
Length = 1472
Score = 28.2 bits (14), Expect = 6.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 150 gcgggcaggccgaa 163
||||||||||||||
Sbjct: 101 gcgggcaggccgaa 114
>ISMdi2
Length = 1689
Score = 28.2 bits (14), Expect = 6.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 148 gtgcgggcaggccg 161
||||||||||||||
Sbjct: 1020 gtgcgggcaggccg 1033
>ISAnsp5
Length = 2192
Score = 28.2 bits (14), Expect = 6.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 89 ggaagatcacggtc 102
||||||||||||||
Sbjct: 738 ggaagatcacggtc 725
>ISCARN103
Length = 1410
Score = 28.2 bits (14), Expect = 6.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 27 gcgcacgctgcctg 40
||||||||||||||
Sbjct: 1238 gcgcacgctgcctg 1225
>ISCARN91
Length = 1432
Score = 28.2 bits (14), Expect = 6.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 224 gttcaagaatggca 237
||||||||||||||
Sbjct: 800 gttcaagaatggca 813
>ISAzca2
Length = 2458
Score = 28.2 bits (14), Expect = 6.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 50 gctcgaagaggccg 63
||||||||||||||
Sbjct: 1080 gctcgaagaggccg 1093
>ISAli18
Length = 1752
Score = 28.2 bits (14), Expect = 6.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 285 catgccgctcgtcg 298
||||||||||||||
Sbjct: 1343 catgccgctcgtcg 1330
>ISGur15
Length = 2390
Score = 28.2 bits (14), Expect = 6.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 5 tgaacacctgcggc 18
||||||||||||||
Sbjct: 2236 tgaacacctgcggc 2223
>ISMyma5
Length = 1838
Score = 28.2 bits (14), Expect = 6.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 234 ggcatcacgcaacg 247
||||||||||||||
Sbjct: 421 ggcatcacgcaacg 408
>ISAzvi2
Length = 1396
Score = 28.2 bits (14), Expect = 6.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 24 cttgcgcacgctgc 37
||||||||||||||
Sbjct: 907 cttgcgcacgctgc 920
>IS5075
Length = 1327
Score = 28.2 bits (14), Expect = 6.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 275 ggagaaccatcatg 288
||||||||||||||
Sbjct: 57 ggagaaccatcatg 70
>ISJp4
Length = 915
Score = 28.2 bits (14), Expect = 6.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 287 tgccgctcgtcgac 300
||||||||||||||
Sbjct: 566 tgccgctcgtcgac 579
>IS866
Length = 2716
Score = 28.2 bits (14), Expect = 6.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 88 cggaagatcacggt 101
||||||||||||||
Sbjct: 691 cggaagatcacggt 678
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_92_length_325_cov_0.725806_ID_5356
(325 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISPko2 | IS256 | Paracoccus kondratievae | 38 | 0.007 | |
| TnXo19 | Tn3 | Xanthomonas oryzae | 32 | 0.41 | |
| ISSer1 | IS110 | Saccharopolyspora erythraea | 32 | 0.41 | |
| ISLefe1 | IS1380 | Leptospirillum ferrooxidans | 30 | 1.6 | |
| ISPa43 | Tn3 | Pseudomonas aeruginosa | 30 | 1.6 | |
| ISRhru3 | IS110 | IS1111 | Rhodospirillum rubrum | 30 | 1.6 |
| ISMdi24 | IS5 | IS427 | Methylobacterium dichloromethanicum | 30 | 1.6 |
| ISAzo29 | ISAs1 | Azoarcus sp. | 30 | 1.6 | |
| ISAzo12 | IS21 | Azoarcus sp. | 30 | 1.6 | |
| ISAfe10 | IS607 | Acidithiobacillus ferrooxidans | 30 | 1.6 | |
| ISRso18 | IS5 | IS5 | Ralstonia solanacearum | 30 | 1.6 |
| IS4811 | IS5 | IS1031 | Streptomyces lividans | 30 | 1.6 |
| ISPa36 | IS21 | Pseudomonas aeruginosa | 28 | 6.4 | |
| ISMesi1 | IS3 | IS150 | Meiothermus silvanus | 28 | 6.4 |
| ISAzs32 | IS110 | IS1111 | Azospirillum sp. | 28 | 6.4 |
| ISAzs25 | IS1380 | Azospirillum sp. | 28 | 6.4 | |
| ISAzs17 | Tn3 | Azospirillum sp. | 28 | 6.4 | |
| ISMch9 | IS5 | IS427 | Methylobacterium chloromethanicum | 28 | 6.4 |
| ISSisp2 | IS5 | IS903 | Silicibacter sp. | 28 | 6.4 |
| ISBj2_B | IS5 | IS5 | Bradyrhizobium japonicum | 28 | 6.4 |
| ISMno14 | IS110 | IS1111 | Methylobacterium nodulans | 28 | 6.4 |
| ISAau5 | ISNCY | Arthrobacter aurescens | 28 | 6.4 | |
| ISMav6 | IS110 | Mycobacterium avium | 28 | 6.4 | |
| ISMex33 | IS3 | IS51 | Methylobacterium extorquens | 28 | 6.4 |
| ISMex14 | IS256 | Methylobacterium extorquens | 28 | 6.4 | |
| ISSen2 | IS5 | IS427 | Salmonella enterica | 28 | 6.4 |
| ISAfe7 | IS3 | IS51 | Acidithiobacillus ferrooxidans | 28 | 6.4 |
| ISBlma9 | IS66 | Blastopirellula marina | 28 | 6.4 | |
| ISAli4 | IS3 | IS51 | Azospirillum lipoferum | 28 | 6.4 |
| ISJsp1 | IS3 | IS51 | Janthinobacterium sp. | 28 | 6.4 |
| ISRme15 | IS3 | IS51 | Ralstonia metallidurans | 28 | 6.4 |
| ISApr2 | IS1595 | ISSod11 | Alpha proteobacterium | 28 | 6.4 |
| ISAav4 | IS3 | IS3 | Acidovorax avenae | 28 | 6.4 |
| ISHne1 | IS3 | IS51 | Hyphomonas neptunium | 28 | 6.4 |
| ISMca3 | IS3 | IS51 | Methylococcus capsulatus | 28 | 6.4 |
| ISSav1 | IS4 | IS4 | Streptomyces avermitilis | 28 | 6.4 |
| ISRtr2 | IS3 | IS51 | Rhizobium tropici | 28 | 6.4 |
| ISAzsp1 | IS3 | IS51 | Azotobacter sp. | 28 | 6.4 |
| ISCc3 | IS3 | IS150 | Caulobacter crescentus | 28 | 6.4 |
| ISPpu4 | IS3 | IS3 | Pseudomonas putida | 28 | 6.4 |
| IS902 | IS110 | - | Mycobacterium avium | 28 | 6.4 |
| IS901 | IS110 | - | Mycobacterium avium | 28 | 6.4 |
| IS868 | IS3 | IS51 | Agrobacterium tumefaciens | 28 | 6.4 |
| IS1416 | IS3 | IS51 | Burkholderia glumae | 28 | 6.4 |
| IS1066 | IS630 | - | Pseudomonas sp. | 28 | 6.4 |
>ISPko2
Length = 1396
Score = 38.2 bits (19), Expect = 0.007
Identities = 28/31 (90%)
Strand = Plus / Minus
Query: 128 cgccaagagcgccgcgcgcagcatcggcacg 158
||||||||||||| | ||||||||||||||
Sbjct: 1243 cgccaagagcgcccagagcagcatcggcacg 1213
>TnXo19
Length = 18767
Score = 32.2 bits (16), Expect = 0.41
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 39 ggcggcttgttcggtg 54
||||||||||||||||
Sbjct: 2412 ggcggcttgttcggtg 2397
Score = 28.2 bits (14), Expect = 6.4
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 144 cgcagcatcggcacgcaa 161
||||||||||||| ||||
Sbjct: 2685 cgcagcatcggcaggcaa 2702
>ISSer1
Length = 1447
Score = 32.2 bits (16), Expect = 0.41
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 29 ggcagatgagggcggc 44
||||||||||||||||
Sbjct: 1341 ggcagatgagggcggc 1326
>ISLefe1
Length = 1710
Score = 30.2 bits (15), Expect = 1.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 167 ccgggcgatcatccg 181
|||||||||||||||
Sbjct: 373 ccgggcgatcatccg 359
>ISPa43
Length = 19903
Score = 30.2 bits (15), Expect = 1.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 112 gcgtcatcgagtccg 126
|||||||||||||||
Sbjct: 11231 gcgtcatcgagtccg 11245
>ISRhru3
Length = 1382
Score = 30.2 bits (15), Expect = 1.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 141 gcgcgcagcatcggc 155
|||||||||||||||
Sbjct: 677 gcgcgcagcatcggc 663
>ISMdi24
Length = 849
Score = 30.2 bits (15), Expect = 1.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 27 gcggcagatgagggc 41
|||||||||||||||
Sbjct: 819 gcggcagatgagggc 805
>ISAzo29
Length = 1304
Score = 30.2 bits (15), Expect = 1.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 90 ggcaagtcgagccga 104
|||||||||||||||
Sbjct: 464 ggcaagtcgagccga 478
>ISAzo12
Length = 3075
Score = 30.2 bits (15), Expect = 1.6
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 4 cgccggcggcgaccaaggc 22
||||||||||| |||||||
Sbjct: 2581 cgccggcggcggccaaggc 2599
>ISAfe10
Length = 2232
Score = 30.2 bits (15), Expect = 1.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 192 gggtcgattctcggc 206
|||||||||||||||
Sbjct: 275 gggtcgattctcggc 261
>ISRso18
Length = 1188
Score = 30.2 bits (15), Expect = 1.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 54 ggtctgggtggcatg 68
|||||||||||||||
Sbjct: 861 ggtctgggtggcatg 847
>IS4811
Length = 5396
Score = 30.2 bits (15), Expect = 1.6
Identities = 21/23 (91%)
Strand = Plus / Plus
Query: 2 cgcgccggcggcgaccaaggccc 24
||||||||||||| ||| |||||
Sbjct: 4088 cgcgccggcggcggccagggccc 4110
>ISPa36
Length = 2468
Score = 28.2 bits (14), Expect = 6.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 51 ggtggtctgggtgg 64
||||||||||||||
Sbjct: 2388 ggtggtctgggtgg 2375
>ISMesi1
Length = 1234
Score = 28.2 bits (14), Expect = 6.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 296 ggccgaccaagcgt 309
||||||||||||||
Sbjct: 284 ggccgaccaagcgt 271
>ISAzs32
Length = 1601
Score = 28.2 bits (14), Expect = 6.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 133 agagcgccgcgcgc 146
||||||||||||||
Sbjct: 1470 agagcgccgcgcgc 1457
>ISAzs25
Length = 1614
Score = 28.2 bits (14), Expect = 6.4
Identities = 20/22 (90%)
Strand = Plus / Plus
Query: 132 aagagcgccgcgcgcagcatcg 153
|||| ||||||||||| |||||
Sbjct: 1327 aagatcgccgcgcgcatcatcg 1348
>ISAzs17
Length = 7252
Score = 28.2 bits (14), Expect = 6.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 145 gcagcatcggcacg 158
||||||||||||||
Sbjct: 2471 gcagcatcggcacg 2484
>ISMch9
Length = 848
Score = 28.2 bits (14), Expect = 6.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 29 ggcagatgagggcg 42
||||||||||||||
Sbjct: 816 ggcagatgagggcg 803
>ISSisp2
Length = 1050
Score = 28.2 bits (14), Expect = 6.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 163 tcggccgggcgatc 176
||||||||||||||
Sbjct: 797 tcggccgggcgatc 810
>ISBj2_B
Length = 1509
Score = 28.2 bits (14), Expect = 6.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 38 gggcggcttgttcg 51
||||||||||||||
Sbjct: 1054 gggcggcttgttcg 1067
>ISMno14
Length = 1428
Score = 28.2 bits (14), Expect = 6.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 137 cgccgcgcgcagca 150
||||||||||||||
Sbjct: 521 cgccgcgcgcagca 534
>ISAau5
Length = 3989
Score = 28.2 bits (14), Expect = 6.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 201 ctcggcggcagcac 214
||||||||||||||
Sbjct: 2458 ctcggcggcagcac 2471
>ISMav6
Length = 1472
Score = 28.2 bits (14), Expect = 6.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 110 cagcgtcatcgagt 123
||||||||||||||
Sbjct: 166 cagcgtcatcgagt 153
>ISMex33
Length = 1318
Score = 28.2 bits (14), Expect = 6.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 95 gtcgagccgatctg 108
||||||||||||||
Sbjct: 413 gtcgagccgatctg 426
>ISMex14
Length = 1381
Score = 28.2 bits (14), Expect = 6.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 5 gccggcggcgacca 18
||||||||||||||
Sbjct: 928 gccggcggcgacca 915
>ISSen2
Length = 846
Score = 28.2 bits (14), Expect = 6.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 72 ggcgggatgttcgg 85
||||||||||||||
Sbjct: 655 ggcgggatgttcgg 642
>ISAfe7
Length = 1329
Score = 28.2 bits (14), Expect = 6.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 95 gtcgagccgatctg 108
||||||||||||||
Sbjct: 419 gtcgagccgatctg 432
>ISBlma9
Length = 2606
Score = 28.2 bits (14), Expect = 6.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 79 tgttcggcggcggc 92
||||||||||||||
Sbjct: 549 tgttcggcggcggc 562
>ISAli4
Length = 1324
Score = 28.2 bits (14), Expect = 6.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 95 gtcgagccgatctg 108
||||||||||||||
Sbjct: 419 gtcgagccgatctg 432
>ISJsp1
Length = 1312
Score = 28.2 bits (14), Expect = 6.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 95 gtcgagccgatctg 108
||||||||||||||
Sbjct: 410 gtcgagccgatctg 423
>ISRme15
Length = 1325
Score = 28.2 bits (14), Expect = 6.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 95 gtcgagccgatctg 108
||||||||||||||
Sbjct: 417 gtcgagccgatctg 430
>ISApr2
Length = 1029
Score = 28.2 bits (14), Expect = 6.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 11 ggcgaccaaggccc 24
||||||||||||||
Sbjct: 240 ggcgaccaaggccc 253
>ISAav4
Length = 1308
Score = 28.2 bits (14), Expect = 6.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 125 cgccgccaagagcg 138
||||||||||||||
Sbjct: 332 cgccgccaagagcg 345
>ISHne1
Length = 1324
Score = 28.2 bits (14), Expect = 6.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 95 gtcgagccgatctg 108
||||||||||||||
Sbjct: 419 gtcgagccgatctg 432
>ISMca3
Length = 1320
Score = 28.2 bits (14), Expect = 6.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 95 gtcgagccgatctg 108
||||||||||||||
Sbjct: 412 gtcgagccgatctg 425
>ISSav1
Length = 1776
Score = 28.2 bits (14), Expect = 6.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 1 acgcgccggcggcg 14
||||||||||||||
Sbjct: 263 acgcgccggcggcg 276
>ISRtr2
Length = 1321
Score = 28.2 bits (14), Expect = 6.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 95 gtcgagccgatctg 108
||||||||||||||
Sbjct: 416 gtcgagccgatctg 429
>ISAzsp1
Length = 1309
Score = 28.2 bits (14), Expect = 6.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 95 gtcgagccgatctg 108
||||||||||||||
Sbjct: 410 gtcgagccgatctg 423
>ISCc3
Length = 1514
Score = 28.2 bits (14), Expect = 6.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 194 gtcgattctcggcg 207
||||||||||||||
Sbjct: 375 gtcgattctcggcg 362
>ISPpu4
Length = 1663
Score = 28.2 bits (14), Expect = 6.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 109 acagcgtcatcgag 122
||||||||||||||
Sbjct: 1452 acagcgtcatcgag 1465
>IS902
Length = 1470
Score = 28.2 bits (14), Expect = 6.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 110 cagcgtcatcgagt 123
||||||||||||||
Sbjct: 165 cagcgtcatcgagt 152
>IS901
Length = 1472
Score = 28.2 bits (14), Expect = 6.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 110 cagcgtcatcgagt 123
||||||||||||||
Sbjct: 166 cagcgtcatcgagt 153
>IS868
Length = 1321
Score = 28.2 bits (14), Expect = 6.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 95 gtcgagccgatctg 108
||||||||||||||
Sbjct: 416 gtcgagccgatctg 429
>IS1416
Length = 1322
Score = 28.2 bits (14), Expect = 6.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 95 gtcgagccgatctg 108
||||||||||||||
Sbjct: 413 gtcgagccgatctg 426
>IS1066
Length = 1137
Score = 28.2 bits (14), Expect = 6.4
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 84 ggcggcggcaagtcgagc 101
||||||||||| ||||||
Sbjct: 379 ggcggcggcaactcgagc 362
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_93_length_324_cov_0.88664_ID_5358
(324 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISShes10 | IS30 | Shewanella sp. | 34 | 0.10 | |
| ISPsp9 | IS1380 | Pseudomonas sp. | 32 | 0.41 | |
| ISMpo10 | Tn3 | Methylobacterium populi | 32 | 0.41 | |
| ISRba5 | IS4 | IS4Sa | Rhodopirellula baltica | 32 | 0.41 |
| ISHalsp1 | IS200/IS605 | IS1341 | Halorubrum sp. | 30 | 1.6 |
| ISAzs19 | IS256 | Azospirillum sp. | 30 | 1.6 | |
| ISMav4 | IS481 | Mycobacterium avium | 30 | 1.6 | |
| ISBlma5 | IS3 | IS407 | Blastopirellula marina | 30 | 1.6 |
| IS51 | IS3 | IS51 | Pseudomonas syringae | 30 | 1.6 |
| ISPsy34 | IS66 | Pseudomonas syringae | 28 | 6.4 | |
| ISPsp8 | IS30 | Pseudomonas sp. | 28 | 6.4 | |
| ISPsp7 | IS30 | Pseudomonas sp. | 28 | 6.4 | |
| ISSm4 | ISL3 | Serratia marcescens | 28 | 6.4 | |
| ISBusp5 | ISKra4 | ISAzba1 | Burkholderia sp. | 28 | 6.4 |
| ISCep1 | ISKra4 | ISAzba1 | Crinalium epipsammum | 28 | 6.4 |
| ISGob7 | ISKra4 | ISKra4 | Gemmata obscuriglobus | 28 | 6.4 |
| ISMfu2 | ISKra4 | ISKra4 | Myxococcus fulvus | 28 | 6.4 |
| ISNha9 | IS256 | Nitrobacter hamburgensis | 28 | 6.4 | |
| ISSisp2 | IS5 | IS903 | Silicibacter sp. | 28 | 6.4 |
| ISRce2 | IS1182 | Rhodospirillum centenum | 28 | 6.4 | |
| ISGau1 | IS3 | IS3 | Gemmatimonas aurantiaca | 28 | 6.4 |
| ISBma2 | IS1182 | Burkholderia mallei | 28 | 6.4 | |
| IS684 | IS66 | Pseudomonas syringae | 28 | 6.4 | |
| ISVer2 | ISAs1 | Bacterium Ellin514 | 28 | 6.4 | |
| ISCARN40 | IS256 | Metagenomic data from CARNOULES | 28 | 6.4 | |
| ISAzo11 | IS5 | IS5 | Azoarcus sp. | 28 | 6.4 |
| ISBusp2 | IS5 | IS5 | Burkholderia sp. | 28 | 6.4 |
| ISMsm9 | IS481 | Mycobacterium smegmatis | 28 | 6.4 | |
| ISFsp5 | IS4 | IS4 | Frankia sp. | 28 | 6.4 |
| ISRsp1 | IS66 | - | Rhizobium sp. | 28 | 6.4 |
| ISPfl2 | IS30 | - | Pseudomonas fluorescens | 28 | 6.4 |
| ISMav1 | IS21 | - | Mycobacterium avium | 28 | 6.4 |
| IS1612 | IS21 | - | Mycobacterium avium | 28 | 6.4 |
>ISShes10
Length = 1113
Score = 34.2 bits (17), Expect = 0.10
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 145 gtcgatcggcgcggcccgatc 165
|||||||||||||||| ||||
Sbjct: 512 gtcgatcggcgcggccagatc 532
>ISPsp9
Length = 1718
Score = 32.2 bits (16), Expect = 0.41
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 101 gcagcgccgaggcgca 116
||||||||||||||||
Sbjct: 1145 gcagcgccgaggcgca 1160
>ISMpo10
Length = 4911
Score = 32.2 bits (16), Expect = 0.41
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 302 tcgatgtgcagatcgg 317
||||||||||||||||
Sbjct: 4139 tcgatgtgcagatcgg 4124
>ISRba5
Length = 1743
Score = 32.2 bits (16), Expect = 0.41
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 38 cgaagccggtgggctg 53
||||||||||||||||
Sbjct: 574 cgaagccggtgggctg 589
>ISHalsp1
Length = 1584
Score = 30.2 bits (15), Expect = 1.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 199 gtccagcgtctcgcg 213
|||||||||||||||
Sbjct: 376 gtccagcgtctcgcg 362
>ISAzs19
Length = 1322
Score = 30.2 bits (15), Expect = 1.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 9 ggcgcagcaggtgga 23
|||||||||||||||
Sbjct: 839 ggcgcagcaggtgga 825
>ISMav4
Length = 1089
Score = 30.2 bits (15), Expect = 1.6
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 225 ggccatcccggcctcgccc 243
|||||| ||||||||||||
Sbjct: 275 ggccattccggcctcgccc 257
>ISBlma5
Length = 1296
Score = 30.2 bits (15), Expect = 1.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 84 gatcagcctcgatcg 98
|||||||||||||||
Sbjct: 435 gatcagcctcgatcg 449
>IS51
Length = 1311
Score = 30.2 bits (15), Expect = 1.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 33 cttgtcgaagccggt 47
|||||||||||||||
Sbjct: 1007 cttgtcgaagccggt 1021
>ISPsy34
Length = 2041
Score = 28.2 bits (14), Expect = 6.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 149 atcggcgcggcccg 162
||||||||||||||
Sbjct: 1504 atcggcgcggcccg 1491
>ISPsp8
Length = 1113
Score = 28.2 bits (14), Expect = 6.4
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 148 gatcggcgcggcccgatc 165
||||||||||||| ||||
Sbjct: 515 gatcggcgcggccagatc 532
>ISPsp7
Length = 1113
Score = 28.2 bits (14), Expect = 6.4
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 148 gatcggcgcggcccgatc 165
||||||||||||| ||||
Sbjct: 515 gatcggcgcggccagatc 532
>ISSm4
Length = 9109
Score = 28.2 bits (14), Expect = 6.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 110 aggcgcatcactgg 123
||||||||||||||
Sbjct: 153 aggcgcatcactgg 166
>ISBusp5
Length = 1533
Score = 28.2 bits (14), Expect = 6.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 195 cggcgtccagcgtc 208
||||||||||||||
Sbjct: 298 cggcgtccagcgtc 311
>ISCep1
Length = 2958
Score = 28.2 bits (14), Expect = 6.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 50 gctggtttgccttt 63
||||||||||||||
Sbjct: 2724 gctggtttgccttt 2737
>ISGob7
Length = 1463
Score = 28.2 bits (14), Expect = 6.4
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 294 tgccagcgtcgatgtgca 311
|||| |||||||||||||
Sbjct: 725 tgcccgcgtcgatgtgca 708
>ISMfu2
Length = 1554
Score = 28.2 bits (14), Expect = 6.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 24 gctcgatggcttgt 37
||||||||||||||
Sbjct: 49 gctcgatggcttgt 36
>ISNha9
Length = 1322
Score = 28.2 bits (14), Expect = 6.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 10 gcgcagcaggtgga 23
||||||||||||||
Sbjct: 840 gcgcagcaggtgga 827
>ISSisp2
Length = 1050
Score = 28.2 bits (14), Expect = 6.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 13 cagcaggtggagct 26
||||||||||||||
Sbjct: 420 cagcaggtggagct 407
>ISRce2
Length = 1528
Score = 28.2 bits (14), Expect = 6.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 39 gaagccggtgggct 52
||||||||||||||
Sbjct: 725 gaagccggtgggct 712
>ISGau1
Length = 1276
Score = 28.2 bits (14), Expect = 6.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 147 cgatcggcgcggcc 160
||||||||||||||
Sbjct: 915 cgatcggcgcggcc 928
>ISBma2
Length = 1573
Score = 28.2 bits (14), Expect = 6.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 9 ggcgcagcaggtgg 22
||||||||||||||
Sbjct: 139 ggcgcagcaggtgg 126
>IS684
Length = 2040
Score = 28.2 bits (14), Expect = 6.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 149 atcggcgcggcccg 162
||||||||||||||
Sbjct: 1503 atcggcgcggcccg 1490
>ISVer2
Length = 1231
Score = 28.2 bits (14), Expect = 6.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 54 gtttgcctttgatg 67
||||||||||||||
Sbjct: 1165 gtttgcctttgatg 1152
>ISCARN40
Length = 1264
Score = 28.2 bits (14), Expect = 6.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 193 gacggcgtccagcg 206
||||||||||||||
Sbjct: 571 gacggcgtccagcg 558
>ISAzo11
Length = 1280
Score = 28.2 bits (14), Expect = 6.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 54 gtttgcctttgatg 67
||||||||||||||
Sbjct: 109 gtttgcctttgatg 122
>ISBusp2
Length = 1349
Score = 28.2 bits (14), Expect = 6.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 133 gccatgcagatggt 146
||||||||||||||
Sbjct: 783 gccatgcagatggt 796
>ISMsm9
Length = 1093
Score = 28.2 bits (14), Expect = 6.4
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 226 gccatcccggcctcgccc 243
||||| ||||||||||||
Sbjct: 275 gccattccggcctcgccc 258
>ISFsp5
Length = 1617
Score = 28.2 bits (14), Expect = 6.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 190 gtggacggcgtcca 203
||||||||||||||
Sbjct: 578 gtggacggcgtcca 591
>ISRsp1
Length = 3481
Score = 28.2 bits (14), Expect = 6.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 11 cgcagcaggtggag 24
||||||||||||||
Sbjct: 388 cgcagcaggtggag 375
>ISPfl2
Length = 1081
Score = 28.2 bits (14), Expect = 6.4
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 148 gatcggcgcggcccgatc 165
||||||||||||| ||||
Sbjct: 483 gatcggcgcggccagatc 500
>ISMav1
Length = 2536
Score = 28.2 bits (14), Expect = 6.4
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 93 cgatcgcagcagcgccga 110
||||||||||||| ||||
Sbjct: 1414 cgatcgcagcagcaccga 1397
>IS1612
Length = 2532
Score = 28.2 bits (14), Expect = 6.4
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 93 cgatcgcagcagcgccga 110
||||||||||||| ||||
Sbjct: 1410 cgatcgcagcagcaccga 1393
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_94_length_324_cov_0.882591_ID_5360
(324 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| IS1326 | IS21 | - | Pseudomonas aeruginosa | 34 | 0.10 |
| ISSod9 | Tn3 | Shewanella oneidensis | 30 | 1.6 | |
| ISCARN93 | IS4 | IS4Sa | Metagenomic data from CARNOULES | 30 | 1.6 |
| ISAe1 | ISL3 | - | Ralstonia eutropha | 30 | 1.6 |
| IS1452 | IS701 | - | Acetobacter pasteurianus | 30 | 1.6 |
| TnXo19 | Tn3 | Xanthomonas oryzae | 28 | 6.4 | |
| ISPa60 | ISAs1 | Pseudomonas aeruginosa | 28 | 6.4 | |
| ISNma15 | IS200/IS605 | IS1341 | Natrialba magadii | 28 | 6.4 |
| ISNma13 | IS200/IS605 | IS1341 | Natrialba magadii | 28 | 6.4 |
| ISMtu1 | IS256 | Mycobacterium tusciae | 28 | 6.4 | |
| ISRel15 | IS66 | Rhizobium etli | 28 | 6.4 | |
| ISBdo1 | IS1182 | Burkholderia dolosa | 28 | 6.4 | |
| ISHha2 | IS5 | Halorhodospira halophila | 28 | 6.4 | |
| ISNha6 | IS5 | IS5 | Nitrobacter hamburgensis | 28 | 6.4 |
| ISBma2 | IS1182 | Burkholderia mallei | 28 | 6.4 | |
| ISBfun3 | IS1182 | Burkholderia fungorum | 28 | 6.4 | |
| ISMex39 | IS21 | Methylobacterium extorquens | 28 | 6.4 | |
| ISTha2 | ISAs1 | Thauera sp. | 28 | 6.4 | |
| ISOih2 | IS200/IS605 | IS200 | Oceanobacillus iheyensis | 28 | 6.4 |
| ISCARN22 | IS66 | Metagenomic data from CARNOULES | 28 | 6.4 | |
| ISCARN15 | IS66 | Metagenomic data from CARNOULES | 28 | 6.4 | |
| ISXau4 | IS66 | Xanthobacter autotrophicus | 28 | 6.4 | |
| ISFpe1 | IS66 | Fulvimarina pelagi | 28 | 6.4 | |
| ISApr6 | IS66 | Alpha proteobacterium | 28 | 6.4 | |
| ISRta4 | IS110 | Ralstonia taiwanensis | 28 | 6.4 | |
| ISXca4 | IS1595 | IS1595 | Xanthomonas campestris | 28 | 6.4 |
| ISAzvi12 | IS110 | IS1111 | Azotobacter vinelandii | 28 | 6.4 |
| ISPosp5 | IS3 | IS3 | Polaromonas sp. | 28 | 6.4 |
| ISSod5 | IS256 | Shewanella oneidensis | 28 | 6.4 | |
| ISMva1 | IS1595 | ISSod11 | Mycobacterium vanbaalenii | 28 | 6.4 |
| IS1595 | IS1595 | IS1595 | Xanthomonas campestris | 28 | 6.4 |
| ISNph4 | IS5 | ISH1 | Natronomonas pharaonis | 28 | 6.4 |
| IS657 | IS200/IS605 | IS200 | Bacillus halodurans | 28 | 6.4 |
| IS204 | ISL3 | - | Nocardia asteroides | 28 | 6.4 |
| IS1354 | IS256 | - | Methylobacterium dichloromethanicum | 28 | 6.4 |
>IS1326
Length = 2470
Score = 34.2 bits (17), Expect = 0.10
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 296 caaagccattgggtagcgcca 316
||||| |||||||||||||||
Sbjct: 1044 caaaggcattgggtagcgcca 1024
>ISSod9
Length = 4412
Score = 30.2 bits (15), Expect = 1.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 160 atgtacccggcggcg 174
|||||||||||||||
Sbjct: 4040 atgtacccggcggcg 4026
>ISCARN93
Length = 1311
Score = 30.2 bits (15), Expect = 1.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 150 gtcgtccttgatgta 164
|||||||||||||||
Sbjct: 473 gtcgtccttgatgta 459
>ISAe1
Length = 1313
Score = 30.2 bits (15), Expect = 1.6
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 247 ttgcccatcgcgcgcatca 265
||||||| |||||||||||
Sbjct: 745 ttgcccaacgcgcgcatca 763
>IS1452
Length = 1411
Score = 30.2 bits (15), Expect = 1.6
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 121 agggcctcggcatcccagt 139
||||| |||||||||||||
Sbjct: 308 agggcatcggcatcccagt 290
>TnXo19
Length = 18767
Score = 28.2 bits (14), Expect = 6.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 207 ctcgccgatgacca 220
||||||||||||||
Sbjct: 17347 ctcgccgatgacca 17334
>ISPa60
Length = 1228
Score = 28.2 bits (14), Expect = 6.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 240 ggtctggttgccca 253
||||||||||||||
Sbjct: 909 ggtctggttgccca 896
>ISNma15
Length = 1475
Score = 28.2 bits (14), Expect = 6.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 65 cttgctggcgacgc 78
||||||||||||||
Sbjct: 650 cttgctggcgacgc 637
>ISNma13
Length = 1475
Score = 28.2 bits (14), Expect = 6.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 65 cttgctggcgacgc 78
||||||||||||||
Sbjct: 650 cttgctggcgacgc 637
>ISMtu1
Length = 1474
Score = 28.2 bits (14), Expect = 6.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 164 acccggcggcgtcg 177
||||||||||||||
Sbjct: 169 acccggcggcgtcg 156
>ISRel15
Length = 2497
Score = 28.2 bits (14), Expect = 6.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 275 cttcggccgccggg 288
||||||||||||||
Sbjct: 1392 cttcggccgccggg 1379
>ISBdo1
Length = 1572
Score = 28.2 bits (14), Expect = 6.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 87 gccggcctcggtgc 100
||||||||||||||
Sbjct: 794 gccggcctcggtgc 807
>ISHha2
Length = 1339
Score = 28.2 bits (14), Expect = 6.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 65 cttgctggcgacgc 78
||||||||||||||
Sbjct: 861 cttgctggcgacgc 874
>ISNha6
Length = 1547
Score = 28.2 bits (14), Expect = 6.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 161 tgtacccggcggcg 174
||||||||||||||
Sbjct: 1424 tgtacccggcggcg 1411
>ISBma2
Length = 1573
Score = 28.2 bits (14), Expect = 6.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 87 gccggcctcggtgc 100
||||||||||||||
Sbjct: 792 gccggcctcggtgc 805
>ISBfun3
Length = 1627
Score = 28.2 bits (14), Expect = 6.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 87 gccggcctcggtgc 100
||||||||||||||
Sbjct: 850 gccggcctcggtgc 863
>ISMex39
Length = 2456
Score = 28.2 bits (14), Expect = 6.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 119 gcagggcctcggca 132
||||||||||||||
Sbjct: 1429 gcagggcctcggca 1416
>ISTha2
Length = 1268
Score = 28.2 bits (14), Expect = 6.4
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 241 gtctggttgcccatcgcg 258
|||||| |||||||||||
Sbjct: 669 gtctgggtgcccatcgcg 652
>ISOih2
Length = 740
Score = 28.2 bits (14), Expect = 6.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 84 gttgccggcctcgg 97
||||||||||||||
Sbjct: 689 gttgccggcctcgg 676
>ISCARN22
Length = 2674
Score = 28.2 bits (14), Expect = 6.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 89 cggcctcggtgccg 102
||||||||||||||
Sbjct: 1051 cggcctcggtgccg 1064
>ISCARN15
Length = 2427
Score = 28.2 bits (14), Expect = 6.4
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 202 atctgctcgccgatgacc 219
|||| |||||||||||||
Sbjct: 1231 atcttctcgccgatgacc 1214
>ISXau4
Length = 2458
Score = 28.2 bits (14), Expect = 6.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 83 cgttgccggcctcg 96
||||||||||||||
Sbjct: 405 cgttgccggcctcg 392
>ISFpe1
Length = 2489
Score = 28.2 bits (14), Expect = 6.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 275 cttcggccgccggg 288
||||||||||||||
Sbjct: 1063 cttcggccgccggg 1076
>ISApr6
Length = 2479
Score = 28.2 bits (14), Expect = 6.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 80 tctcgttgccggcc 93
||||||||||||||
Sbjct: 2388 tctcgttgccggcc 2401
>ISRta4
Length = 1915
Score = 28.2 bits (14), Expect = 6.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 294 ggcaaagccattgg 307
||||||||||||||
Sbjct: 1447 ggcaaagccattgg 1460
>ISXca4
Length = 1072
Score = 28.2 bits (14), Expect = 6.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 90 ggcctcggtgccgt 103
||||||||||||||
Sbjct: 166 ggcctcggtgccgt 153
>ISAzvi12
Length = 1248
Score = 28.2 bits (14), Expect = 6.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 32 cgacccagccgtct 45
||||||||||||||
Sbjct: 174 cgacccagccgtct 161
>ISPosp5
Length = 1262
Score = 28.2 bits (14), Expect = 6.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 256 gcgcgcatcaggcg 269
||||||||||||||
Sbjct: 967 gcgcgcatcaggcg 980
>ISSod5
Length = 1293
Score = 28.2 bits (14), Expect = 6.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 266 ggcgggcaccttcg 279
||||||||||||||
Sbjct: 295 ggcgggcaccttcg 308
>ISMva1
Length = 1093
Score = 28.2 bits (14), Expect = 6.4
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 44 ctaccacgaattccggga 61
|||||| |||||||||||
Sbjct: 85 ctaccaggaattccggga 102
>IS1595
Length = 1072
Score = 28.2 bits (14), Expect = 6.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 90 ggcctcggtgccgt 103
||||||||||||||
Sbjct: 166 ggcctcggtgccgt 153
>ISNph4
Length = 929
Score = 28.2 bits (14), Expect = 6.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 152 cgtccttgatgtac 165
||||||||||||||
Sbjct: 522 cgtccttgatgtac 535
>IS657
Length = 734
Score = 28.2 bits (14), Expect = 6.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 84 gttgccggcctcgg 97
||||||||||||||
Sbjct: 685 gttgccggcctcgg 672
>IS204
Length = 1452
Score = 28.2 bits (14), Expect = 6.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 162 gtacccggcggcgt 175
||||||||||||||
Sbjct: 1378 gtacccggcggcgt 1365
>IS1354
Length = 1431
Score = 28.2 bits (14), Expect = 6.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 129 ggcatcccagtcgc 142
||||||||||||||
Sbjct: 616 ggcatcccagtcgc 603
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_95_length_323_cov_0.890244_ID_5284
(323 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISRme9 | IS21 | Ralstonia metallidurans | 36 | 0.026 | |
| ISUnCu18 | ISKra4 | ISAzba1 | Uncultured bacterium | 32 | 0.41 |
| ISSusp3 | ISKra4 | ISAzba1 | Sulfitobacter sp. | 32 | 0.41 |
| ISRssp7 | ISKra4 | ISAzba1 | Roseovarius sp. | 32 | 0.41 |
| ISAli2 | IS630 | Azospirillum lipoferum | 32 | 0.41 | |
| ISCausp2 | IS1595 | ISNha5 | Caulobacter sp. | 32 | 0.41 |
| ISPst9 | ISL3 | Pseudomonas stutzeri | 32 | 0.41 | |
| ISStvi1 | ISAzo13 | Streptomyces violaceusniger | 30 | 1.6 | |
| ISAeh1 | IS66 | Alkalilimnicola ehrlichei | 30 | 1.6 | |
| ISMasp3 | IS3 | IS3 | Magnetococcus sp. | 30 | 1.6 |
| ISLdl1 | ISL3 | - | Lactobacillus delbrueckii | 30 | 1.6 |
| ISAsp6 | IS200/IS605 | Anabaena sp. | 28 | 6.4 | |
| TnAs2 | Tn3 | Aeromonas salmonicida | 28 | 6.4 | |
| TnShfr1 | Tn3 | Shewanella frigidimarina | 28 | 6.4 | |
| ISCysp20 | IS701 | ISAba11 | Cyanothece sp. | 28 | 6.4 |
| ISNamo18 | IS200/IS605 | IS605 | Natronomonas moolapensis | 28 | 6.4 |
| ISHvo18 | IS200/IS605 | Haloferax volcanii | 28 | 6.4 | |
| ISPa40 | Tn3 | Pseudomonas aeruginosa | 28 | 6.4 | |
| ISPa38 | Tn3 | Pseudomonas aeruginosa | 28 | 6.4 | |
| ISStro1 | IS5 | IS427 | Streptosporangium roseum | 28 | 6.4 |
| ISClhy1 | IS1182 | Clostridium hylemonae | 28 | 6.4 | |
| ISGau8 | IS30 | Gemmatimonas aurantiaca | 28 | 6.4 | |
| ISPmar3 | IS5 | IS5 | Paracoccus marcusii | 28 | 6.4 |
| ISPbe1 | IS3 | IS407 | Paracoccus bengalensis | 28 | 6.4 |
| ISXoo14 | IS5 | Xanthomonas oryzae | 28 | 6.4 | |
| ISAzba3 | IS5 | IS903 | Azospirillum brasilense | 28 | 6.4 |
| ISDpr6 | IS1380 | Delta proteobacterium | 28 | 6.4 | |
| ISDpr5 | IS1380 | Delta proteobacterium | 28 | 6.4 | |
| ISShsp2 | IS1182 | Sphingomonas sp. | 28 | 6.4 | |
| ISAde1 | IS66 | Anaeromyxobacter dehalogenans | 28 | 6.4 | |
| ISGob5 | ISAs1 | Gemmata obscuriglobus | 28 | 6.4 | |
| ISAzo24 | IS5 | IS427 | Azoarcus sp. | 28 | 6.4 |
| ISCARN50 | IS1380 | Metagenomic data from CARNOULES | 28 | 6.4 | |
| ISAfe8 | IS200/IS605 | IS1341 | Acidithiobacillus ferrooxidans | 28 | 6.4 |
| ISAnsp3 | IS66 | Anaeromyxobacter sp. | 28 | 6.4 | |
| ISShes9 | IS66 | Shewanella sp. | 28 | 6.4 | |
| ISHne3 | IS110 | Hyphomonas neptunium | 28 | 6.4 | |
| ISSpo2 | IS1380 | Silicibacter pomeroyi | 28 | 6.4 | |
| ISMyca1 | IS1634 | Mycobacterium canettii | 28 | 6.4 | |
| ISBlo10 | IS3 | Bifidobacterium longum | 28 | 6.4 | |
| ISPsy8 | IS3 | IS150 | Pseudomonas syringae | 28 | 6.4 |
| IS1415 | IS21 | - | Rhodococcus erythropolis | 28 | 6.4 |
>ISRme9
Length = 2688
Score = 36.2 bits (18), Expect = 0.026
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 170 cttcccgaaacgagtgat 187
||||||||||||||||||
Sbjct: 126 cttcccgaaacgagtgat 143
>ISUnCu18
Length = 1434
Score = 32.2 bits (16), Expect = 0.41
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 170 cttcccgaaacgagtg 185
||||||||||||||||
Sbjct: 504 cttcccgaaacgagtg 489
>ISSusp3
Length = 1434
Score = 32.2 bits (16), Expect = 0.41
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 170 cttcccgaaacgagtg 185
||||||||||||||||
Sbjct: 504 cttcccgaaacgagtg 489
>ISRssp7
Length = 1434
Score = 32.2 bits (16), Expect = 0.41
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 170 cttcccgaaacgagtg 185
||||||||||||||||
Sbjct: 504 cttcccgaaacgagtg 489
>ISAli2
Length = 1171
Score = 32.2 bits (16), Expect = 0.41
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 283 gcggggccggccgcta 298
||||||||||||||||
Sbjct: 345 gcggggccggccgcta 330
>ISCausp2
Length = 7915
Score = 32.2 bits (16), Expect = 0.41
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 154 cgctgggcgcggcatt 169
||||||||||||||||
Sbjct: 3443 cgctgggcgcggcatt 3428
>ISPst9
Length = 2472
Score = 32.2 bits (16), Expect = 0.41
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 161 cgcggcattcttcccg 176
||||||||||||||||
Sbjct: 837 cgcggcattcttcccg 852
>ISStvi1
Length = 1738
Score = 30.2 bits (15), Expect = 1.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 54 gatcaggagccgggt 68
|||||||||||||||
Sbjct: 897 gatcaggagccgggt 883
>ISAeh1
Length = 2320
Score = 30.2 bits (15), Expect = 1.6
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 41 gctggagtttgacgatcag 59
||||||||||| |||||||
Sbjct: 1912 gctggagtttgtcgatcag 1894
>ISMasp3
Length = 1258
Score = 30.2 bits (15), Expect = 1.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 138 acggaagggatctcg 152
|||||||||||||||
Sbjct: 360 acggaagggatctcg 346
>ISLdl1
Length = 1508
Score = 30.2 bits (15), Expect = 1.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 193 gtctttccgacttta 207
|||||||||||||||
Sbjct: 177 gtctttccgacttta 191
>ISAsp6
Length = 1964
Score = 28.2 bits (14), Expect = 6.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 203 ctttaaatctaacg 216
||||||||||||||
Sbjct: 1505 ctttaaatctaacg 1518
>TnAs2
Length = 8650
Score = 28.2 bits (14), Expect = 6.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 271 tgctgggcttccgc 284
||||||||||||||
Sbjct: 7947 tgctgggcttccgc 7960
>TnShfr1
Length = 5131
Score = 28.2 bits (14), Expect = 6.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 271 tgctgggcttccgc 284
||||||||||||||
Sbjct: 4428 tgctgggcttccgc 4441
>ISCysp20
Length = 1136
Score = 28.2 bits (14), Expect = 6.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 246 tatgagccggaaga 259
||||||||||||||
Sbjct: 234 tatgagccggaaga 247
>ISNamo18
Length = 1885
Score = 28.2 bits (14), Expect = 6.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 82 tccgcgagctgatg 95
||||||||||||||
Sbjct: 394 tccgcgagctgatg 381
>ISHvo18
Length = 1892
Score = 28.2 bits (14), Expect = 6.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 231 gtcggcggcgaacg 244
||||||||||||||
Sbjct: 662 gtcggcggcgaacg 675
>ISPa40
Length = 6592
Score = 28.2 bits (14), Expect = 6.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 271 tgctgggcttccgc 284
||||||||||||||
Sbjct: 5892 tgctgggcttccgc 5905
>ISPa38
Length = 6455
Score = 28.2 bits (14), Expect = 6.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 271 tgctgggcttccgc 284
||||||||||||||
Sbjct: 5755 tgctgggcttccgc 5768
>ISStro1
Length = 973
Score = 28.2 bits (14), Expect = 6.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 10 accgtatgatcggc 23
||||||||||||||
Sbjct: 390 accgtatgatcggc 403
>ISClhy1
Length = 1698
Score = 28.2 bits (14), Expect = 6.4
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 252 ccggaagaggagaacccg 269
||||||||||||| ||||
Sbjct: 812 ccggaagaggagatcccg 829
>ISGau8
Length = 1364
Score = 28.2 bits (14), Expect = 6.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 282 cgcggggccggccg 295
||||||||||||||
Sbjct: 1217 cgcggggccggccg 1204
>ISPmar3
Length = 1282
Score = 28.2 bits (14), Expect = 6.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 43 tggagtttgacgat 56
||||||||||||||
Sbjct: 63 tggagtttgacgat 76
>ISPbe1
Length = 1200
Score = 28.2 bits (14), Expect = 6.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 254 ggaagaggagaacc 267
||||||||||||||
Sbjct: 249 ggaagaggagaacc 262
>ISXoo14
Length = 1310
Score = 28.2 bits (14), Expect = 6.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 152 gacgctgggcgcgg 165
||||||||||||||
Sbjct: 824 gacgctgggcgcgg 837
>ISAzba3
Length = 1112
Score = 28.2 bits (14), Expect = 6.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 283 gcggggccggccgc 296
||||||||||||||
Sbjct: 254 gcggggccggccgc 267
>ISDpr6
Length = 1655
Score = 28.2 bits (14), Expect = 6.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 251 gccggaagaggaga 264
||||||||||||||
Sbjct: 1073 gccggaagaggaga 1086
>ISDpr5
Length = 1653
Score = 28.2 bits (14), Expect = 6.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 251 gccggaagaggaga 264
||||||||||||||
Sbjct: 1071 gccggaagaggaga 1084
>ISShsp2
Length = 1526
Score = 28.2 bits (14), Expect = 6.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 228 ctggtcggcggcga 241
||||||||||||||
Sbjct: 486 ctggtcggcggcga 499
>ISAde1
Length = 2957
Score = 28.2 bits (14), Expect = 6.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 230 ggtcggcggcgaac 243
||||||||||||||
Sbjct: 2346 ggtcggcggcgaac 2359
>ISGob5
Length = 1308
Score = 28.2 bits (14), Expect = 6.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 82 tccgcgagctgatg 95
||||||||||||||
Sbjct: 1025 tccgcgagctgatg 1012
>ISAzo24
Length = 898
Score = 28.2 bits (14), Expect = 6.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 283 gcggggccggccgc 296
||||||||||||||
Sbjct: 613 gcggggccggccgc 600
>ISCARN50
Length = 1662
Score = 28.2 bits (14), Expect = 6.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 103 acgactcgccgaga 116
||||||||||||||
Sbjct: 1006 acgactcgccgaga 993
>ISAfe8
Length = 1472
Score = 28.2 bits (14), Expect = 6.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 303 tccgaaagcttccg 316
||||||||||||||
Sbjct: 344 tccgaaagcttccg 331
>ISAnsp3
Length = 2518
Score = 28.2 bits (14), Expect = 6.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 230 ggtcggcggcgaac 243
||||||||||||||
Sbjct: 2421 ggtcggcggcgaac 2434
>ISShes9
Length = 2370
Score = 28.2 bits (14), Expect = 6.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 214 acgaatacgccaat 227
||||||||||||||
Sbjct: 1302 acgaatacgccaat 1315
>ISHne3
Length = 1172
Score = 28.2 bits (14), Expect = 6.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 282 cgcggggccggccg 295
||||||||||||||
Sbjct: 538 cgcggggccggccg 525
>ISSpo2
Length = 1664
Score = 28.2 bits (14), Expect = 6.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 61 agccgggtttgcag 74
||||||||||||||
Sbjct: 1305 agccgggtttgcag 1292
>ISMyca1
Length = 1968
Score = 28.2 bits (14), Expect = 6.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 306 gaaagcttccgcga 319
||||||||||||||
Sbjct: 221 gaaagcttccgcga 234
>ISBlo10
Length = 1339
Score = 28.2 bits (14), Expect = 6.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 231 gtcggcggcgaacg 244
||||||||||||||
Sbjct: 864 gtcggcggcgaacg 851
>ISPsy8
Length = 1432
Score = 28.2 bits (14), Expect = 6.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 47 gtttgacgatcagg 60
||||||||||||||
Sbjct: 577 gtttgacgatcagg 564
>IS1415
Length = 2580
Score = 28.2 bits (14), Expect = 6.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 228 ctggtcggcggcga 241
||||||||||||||
Sbjct: 459 ctggtcggcggcga 472
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_96_length_321_cov_1.19262_ID_5362
(321 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISDra7 | IS4 | ISPepr1 | Deinococcus radiodurans | 34 | 0.10 |
| ISMva2 | IS481 | Mycobacterium vanbaalenii | 32 | 0.41 | |
| IS987 | IS3 | IS51 | Mycobacterium bovis | 32 | 0.41 |
| IS986 | IS3 | IS51 | Mycobacterium tuberculosis | 32 | 0.41 |
| IS6110 | IS3 | IS51 | Mycobacterium tuberculosis | 32 | 0.41 |
| TnAs3 | Tn3 | Aeromonas salmonicida | 30 | 1.6 | |
| ISCap2 | IS5 | IS903 | Candidatus Accumulibacter phosphatis | 30 | 1.6 |
| ISCARN104 | IS66 | Metagenomic data from CARNOULES | 30 | 1.6 | |
| ISAfe4 | IS66 | Acidithiobacillus ferrooxidans | 30 | 1.6 | |
| ISNme5 | IS110 | Neisseria meningitidis | 30 | 1.6 | |
| ISAs32 | IS3 | IS51 | Aeromonas salmonicida | 28 | 6.4 |
| ISMno21 | IS630 | Methylobacterium nodulans | 28 | 6.4 | |
| ISHalp1 | IS200/IS605 | IS1341 | Halosarcina pallida | 28 | 6.4 |
| ISHal2 | IS200/IS605 | IS1341 | Haloferax alexandrinus | 28 | 6.4 |
| ISAs7 | IS3 | IS51 | Aeromonas salmonicida | 28 | 6.4 |
| ISFK1 | IS21 | Bradyrhizobium japonicum | 28 | 6.4 | |
| ISSiac5 | ISLre2 | Singulisphaera acidiphila | 28 | 6.4 | |
| ISAfe17 | IS3 | IS150 | Acidithiobacillus ferrivorans | 28 | 6.4 |
| ISPa40 | Tn3 | Pseudomonas aeruginosa | 28 | 6.4 | |
| ISCef8 | IS5 | IS427 | Corynebacterium efficiens | 28 | 6.4 |
| ISRta5 | IS5 | IS903 | Cupriavidus taiwanensis | 28 | 6.4 |
| ISBps3 | IS5 | IS903 | Burkholderia pseudomallei | 28 | 6.4 |
| ISRel20 | IS5 | IS1031 | Rhizobium etli | 28 | 6.4 |
| ISVsp2 | IS1634 | Verrucomicrobium spinosum | 28 | 6.4 | |
| ISRsp5 | IS5 | Rhizobium sp. | 28 | 6.4 | |
| ISMma2 | IS1182 | Methanosarcina mazei | 28 | 6.4 | |
| ISSav5 | IS481 | Streptomyces avermitilis | 28 | 6.4 | |
| ISAzo37 | IS5 | IS1031 | Azoarcus sp. | 28 | 6.4 |
| ISCARN65 | IS21 | Metagenomic data from CARNOULES | 28 | 6.4 | |
| ISCARN23 | IS1634 | Metagenomic data from CARNOULES | 28 | 6.4 | |
| ISRme9 | IS21 | Ralstonia metallidurans | 28 | 6.4 | |
| ISTesp2 | ISL3 | Terrabacter sp. | 28 | 6.4 | |
| ISGme3 | IS5 | IS5 | Geobacter metallireducens | 28 | 6.4 |
| ISAs5 | IS3 | IS51 | Aeromonas salmonicida | 28 | 6.4 |
| ISPst9 | ISL3 | Pseudomonas stutzeri | 28 | 6.4 | |
| ISBmu3 | IS21 | Burkholderia multivorans | 28 | 6.4 | |
| ISMlo3 | IS110 | IS1111 | Mesorhizobium loti | 28 | 6.4 |
| ISAs3 | IS256 | Aeromonas salmonicida | 28 | 6.4 | |
| ISRsp2 | IS21 | - | Rhizobium sp. | 28 | 6.4 |
| ISRj2 | IS3 | IS150 | Bradyrhizobium japonicum | 28 | 6.4 |
| ISMt2 | IS21 | - | Mycobacterium tuberculosis | 28 | 6.4 |
| IS406 | IS256 | - | Burkholderia cepacia | 28 | 6.4 |
| IS1921 | IS607 | - | Acidianus ambivalens | 28 | 6.4 |
>ISDra7
Length = 1322
Score = 34.2 bits (17), Expect = 0.10
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 288 tcagtcggccttgcaga 304
|||||||||||||||||
Sbjct: 827 tcagtcggccttgcaga 811
>ISMva2
Length = 1966
Score = 32.2 bits (16), Expect = 0.41
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 108 cctgcgcgatctgctg 123
||||||||||||||||
Sbjct: 1335 cctgcgcgatctgctg 1350
>IS987
Length = 1355
Score = 32.2 bits (16), Expect = 0.41
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 43 ggcttgctcgatcgcg 58
||||||||||||||||
Sbjct: 947 ggcttgctcgatcgcg 932
>IS986
Length = 1354
Score = 32.2 bits (16), Expect = 0.41
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 43 ggcttgctcgatcgcg 58
||||||||||||||||
Sbjct: 946 ggcttgctcgatcgcg 931
>IS6110
Length = 1354
Score = 32.2 bits (16), Expect = 0.41
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 43 ggcttgctcgatcgcg 58
||||||||||||||||
Sbjct: 946 ggcttgctcgatcgcg 931
>TnAs3
Length = 18735
Score = 30.2 bits (15), Expect = 1.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 110 tgcgcgatctgctgg 124
|||||||||||||||
Sbjct: 1933 tgcgcgatctgctgg 1947
>ISCap2
Length = 1123
Score = 30.2 bits (15), Expect = 1.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 277 gagacggccattcag 291
|||||||||||||||
Sbjct: 259 gagacggccattcag 273
>ISCARN104
Length = 2483
Score = 30.2 bits (15), Expect = 1.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 165 catcgccaaagccct 179
|||||||||||||||
Sbjct: 2119 catcgccaaagccct 2133
>ISAfe4
Length = 2477
Score = 30.2 bits (15), Expect = 1.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 106 gccctgcgcgatctg 120
|||||||||||||||
Sbjct: 842 gccctgcgcgatctg 856
Score = 28.2 bits (14), Expect = 6.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 104 ttgccctgcgcgat 117
||||||||||||||
Sbjct: 933 ttgccctgcgcgat 946
>ISNme5
Length = 1143
Score = 30.2 bits (15), Expect = 1.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 160 atcgacatcgccaaa 174
|||||||||||||||
Sbjct: 155 atcgacatcgccaaa 169
>ISAs32
Length = 1232
Score = 28.2 bits (14), Expect = 6.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 25 caggactttctgaa 38
||||||||||||||
Sbjct: 948 caggactttctgaa 961
>ISMno21
Length = 1162
Score = 28.2 bits (14), Expect = 6.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 108 cctgcgcgatctgc 121
||||||||||||||
Sbjct: 615 cctgcgcgatctgc 602
>ISHalp1
Length = 1448
Score = 28.2 bits (14), Expect = 6.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 244 gacgcgctggcgga 257
||||||||||||||
Sbjct: 293 gacgcgctggcgga 280
>ISHal2
Length = 1447
Score = 28.2 bits (14), Expect = 6.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 244 gacgcgctggcgga 257
||||||||||||||
Sbjct: 295 gacgcgctggcgga 282
>ISAs7
Length = 1232
Score = 28.2 bits (14), Expect = 6.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 25 caggactttctgaa 38
||||||||||||||
Sbjct: 948 caggactttctgaa 961
>ISFK1
Length = 2592
Score = 28.2 bits (14), Expect = 6.4
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 112 cgcgatctgctggaaatc 129
||||||||||| ||||||
Sbjct: 2271 cgcgatctgctcgaaatc 2288
>ISSiac5
Length = 1429
Score = 28.2 bits (14), Expect = 6.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 290 agtcggccttgcag 303
||||||||||||||
Sbjct: 256 agtcggccttgcag 269
>ISAfe17
Length = 1334
Score = 28.2 bits (14), Expect = 6.4
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 52 gatcgcgccgaatccgtc 69
|||||| |||||||||||
Sbjct: 371 gatcgcaccgaatccgtc 388
>ISPa40
Length = 6592
Score = 28.2 bits (14), Expect = 6.4
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 34 ctgaaagccggcttgctc 51
||||| ||||||||||||
Sbjct: 900 ctgaaggccggcttgctc 883
>ISCef8
Length = 966
Score = 28.2 bits (14), Expect = 6.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 175 gccctgcccgatca 188
||||||||||||||
Sbjct: 630 gccctgcccgatca 643
>ISRta5
Length = 1130
Score = 28.2 bits (14), Expect = 6.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 81 gcgtggcacggctt 94
||||||||||||||
Sbjct: 754 gcgtggcacggctt 741
>ISBps3
Length = 1133
Score = 28.2 bits (14), Expect = 6.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 81 gcgtggcacggctt 94
||||||||||||||
Sbjct: 757 gcgtggcacggctt 744
>ISRel20
Length = 930
Score = 28.2 bits (14), Expect = 6.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 243 cgacgcgctggcgg 256
||||||||||||||
Sbjct: 192 cgacgcgctggcgg 179
>ISVsp2
Length = 2089
Score = 28.2 bits (14), Expect = 6.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 251 tggcggactcgcgg 264
||||||||||||||
Sbjct: 8 tggcggactcgcgg 21
>ISRsp5
Length = 1320
Score = 28.2 bits (14), Expect = 6.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 106 gccctgcgcgatct 119
||||||||||||||
Sbjct: 445 gccctgcgcgatct 432
>ISMma2
Length = 1669
Score = 28.2 bits (14), Expect = 6.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 132 tcaacaagaaaaag 145
||||||||||||||
Sbjct: 1604 tcaacaagaaaaag 1591
>ISSav5
Length = 1953
Score = 28.2 bits (14), Expect = 6.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 49 ctcgatcgcgccga 62
||||||||||||||
Sbjct: 1164 ctcgatcgcgccga 1151
>ISAzo37
Length = 843
Score = 28.2 bits (14), Expect = 6.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 65 ccgtcttcctgcgc 78
||||||||||||||
Sbjct: 127 ccgtcttcctgcgc 114
>ISCARN65
Length = 2433
Score = 28.2 bits (14), Expect = 6.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 54 tcgcgccgaatccg 67
||||||||||||||
Sbjct: 227 tcgcgccgaatccg 214
>ISCARN23
Length = 1907
Score = 28.2 bits (14), Expect = 6.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 243 cgacgcgctggcgg 256
||||||||||||||
Sbjct: 241 cgacgcgctggcgg 228
>ISRme9
Length = 2688
Score = 28.2 bits (14), Expect = 6.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 113 gcgatctgctggaa 126
||||||||||||||
Sbjct: 2381 gcgatctgctggaa 2394
>ISTesp2
Length = 1397
Score = 28.2 bits (14), Expect = 6.4
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 268 gacgatgccgagacggcc 285
||||| ||||||||||||
Sbjct: 1099 gacgaggccgagacggcc 1116
>ISGme3
Length = 1484
Score = 28.2 bits (14), Expect = 6.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 133 caacaagaaaaaga 146
||||||||||||||
Sbjct: 1167 caacaagaaaaaga 1180
>ISAs5
Length = 1233
Score = 28.2 bits (14), Expect = 6.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 25 caggactttctgaa 38
||||||||||||||
Sbjct: 949 caggactttctgaa 962
>ISPst9
Length = 2472
Score = 28.2 bits (14), Expect = 6.4
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 107 ccctgcgcgatctgctgg 124
|||||| |||||||||||
Sbjct: 1645 ccctgctcgatctgctgg 1662
>ISBmu3
Length = 2697
Score = 28.2 bits (14), Expect = 6.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 180 gcccgatcacgaga 193
||||||||||||||
Sbjct: 1792 gcccgatcacgaga 1805
>ISMlo3
Length = 1405
Score = 28.2 bits (14), Expect = 6.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 111 gcgcgatctgctgg 124
||||||||||||||
Sbjct: 466 gcgcgatctgctgg 479
>ISAs3
Length = 1326
Score = 28.2 bits (14), Expect = 6.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 17 agctcggtcaggac 30
||||||||||||||
Sbjct: 734 agctcggtcaggac 721
>ISRsp2
Length = 2623
Score = 28.2 bits (14), Expect = 6.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 270 cgatgccgagacgg 283
||||||||||||||
Sbjct: 177 cgatgccgagacgg 190
>ISRj2
Length = 1364
Score = 28.2 bits (14), Expect = 6.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 39 agccggcttgctcg 52
||||||||||||||
Sbjct: 675 agccggcttgctcg 662
>ISMt2
Length = 2645
Score = 28.2 bits (14), Expect = 6.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 252 ggcggactcgcggc 265
||||||||||||||
Sbjct: 1962 ggcggactcgcggc 1949
>IS406
Length = 1367
Score = 28.2 bits (14), Expect = 6.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 274 gccgagacggccat 287
||||||||||||||
Sbjct: 1080 gccgagacggccat 1093
>IS1921
Length = 1923
Score = 28.2 bits (14), Expect = 6.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 222 ttttcattgcgaga 235
||||||||||||||
Sbjct: 224 ttttcattgcgaga 211
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_97_length_321_cov_1.08197_ID_5364
(321 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISMno36 | IS6 | Methylobacterium nodulans | 34 | 0.10 | |
| ISRssp6 | ISKra4 | ISAzba1 | Roseovarius sp. | 32 | 0.41 |
| ISAzs14 | IS630 | Azospirillum sp. | 32 | 0.41 | |
| ISAcfe1 | IS1182 | Acidimicrobium ferrooxidans | 32 | 0.41 | |
| ISMno28 | IS6 | Methylobacterium nodulans | 32 | 0.41 | |
| ISMex25 | IS6 | Methylobacterium extorquens | 32 | 0.41 | |
| ISGdi12 | IS701 | Gluconacetobacter diazotrophicus | 32 | 0.41 | |
| IS1632 | IS256 | - | Bradyrhizobium japonicum | 32 | 0.41 |
| ISHhu13 | IS200/IS605 | IS1341 | Halobacterium hubeiense | 30 | 1.6 |
| ISHli10 | IS630 | Halohasta litchfieldiae | 30 | 1.6 | |
| ISNma5 | IS630 | Natrialba magadii | 30 | 1.6 | |
| ISRm20 | IS481 | Sinorhizobium meliloti | 30 | 1.6 | |
| ISApr13 | IS5 | Alpha proteobacterium | 30 | 1.6 | |
| ISApr12 | IS5 | Alpha proteobacterium | 30 | 1.6 | |
| ISMpo1 | IS6 | Methylobacterium populi | 30 | 1.6 | |
| ISMno16 | IS110 | IS1111 | Methylobacterium nodulans | 28 | 6.4 |
| ISHamu1 | IS200/IS605 | IS1341 | Haloferax mucosum | 28 | 6.4 |
| ISHaru1 | IS200/IS605 | IS1341 | Halobellus rufus | 28 | 6.4 |
| TnShfr1 | Tn3 | Shewanella frigidimarina | 28 | 6.4 | |
| IS3509 | IS256 | IS1249 | Corynebacterium jeikeium | 28 | 6.4 |
| IS3503 | IS256 | IS1249 | Corynebacterium jeikeium | 28 | 6.4 |
| ISSaci1 | ISAzo13 | Streptomyces acidiscabies | 28 | 6.4 | |
| ISArsp6 | Tn3 | Arthrobacter sp. | 28 | 6.4 | |
| ISRsp8 | ISL3 | Rhizhobium sp. | 28 | 6.4 | |
| ISAar29 | IS110 | Arthrobacter arilaitensis | 28 | 6.4 | |
| ISAnsp6 | IS1182 | Anaeromyxobacter sp. | 28 | 6.4 | |
| ISAau1 | IS3 | IS407 | Arthrobacter aurescens | 28 | 6.4 |
| ISAzo34 | IS256 | Azoarcus sp. | 28 | 6.4 | |
| ISThsp7 | IS1634 | Thiomonas sp. | 28 | 6.4 | |
| ISCARN11 | IS1595 | ISSod11 | Metagenomic data from CARNOULES | 28 | 6.4 |
| ISAfe9 | IS21 | Acidithiobacillus ferrooxidans | 28 | 6.4 | |
| ISApr2 | IS1595 | ISSod11 | Alpha proteobacterium | 28 | 6.4 |
| ISMva2 | IS481 | Mycobacterium vanbaalenii | 28 | 6.4 | |
| ISAma2 | IS3 | IS407 | Alteromonas macleodii | 28 | 6.4 |
| ISCte3 | IS3 | IS407 | Comamonas testosteroni | 28 | 6.4 |
| ISDsh1 | IS3 | IS51 | Dinoroseobacter shibae | 28 | 6.4 |
| ISCahy1 | ISNCY | Caldicellulosiruptor hydrothermalis | 28 | 6.4 | |
| ISXo5 | IS1595 | IS1595 | Xanthomonas oryzae | 28 | 6.4 |
| ISAzsp1 | IS3 | IS51 | Azotobacter sp. | 28 | 6.4 |
| ISAzo6 | IS1634 | Azoarcus sp. | 28 | 6.4 | |
| IS493 | IS5 | ISL2 | Streptomyces lividans | 28 | 6.4 |
| IS1600 | IS21 | - | Ralstonia eutropha | 28 | 6.4 |
| IS1373 | IS5 | ISL2 | Streptomyces lividans | 28 | 6.4 |
| IS1162 | IS21 | - | Pseudomonas fluorescens | 28 | 6.4 |
>ISMno36
Length = 888
Score = 34.2 bits (17), Expect = 0.10
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 159 ctcgccgtgcttgtcga 175
|||||||||||||||||
Sbjct: 417 ctcgccgtgcttgtcga 401
>ISRssp6
Length = 1454
Score = 32.2 bits (16), Expect = 0.41
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 50 catgaccccgacgctcgccc 69
||||| ||||||||||||||
Sbjct: 131 catgaacccgacgctcgccc 112
>ISAzs14
Length = 1176
Score = 32.2 bits (16), Expect = 0.41
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 153 ggcgatctcgccgtgc 168
||||||||||||||||
Sbjct: 926 ggcgatctcgccgtgc 941
>ISAcfe1
Length = 1772
Score = 32.2 bits (16), Expect = 0.41
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 53 gaccccgacgctcgcc 68
||||||||||||||||
Sbjct: 910 gaccccgacgctcgcc 925
>ISMno28
Length = 892
Score = 32.2 bits (16), Expect = 0.41
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 160 tcgccgtgcttgtcga 175
||||||||||||||||
Sbjct: 421 tcgccgtgcttgtcga 406
>ISMex25
Length = 887
Score = 32.2 bits (16), Expect = 0.41
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 162 gccgtgcttgtcgaca 177
||||||||||||||||
Sbjct: 413 gccgtgcttgtcgaca 398
>ISGdi12
Length = 1419
Score = 32.2 bits (16), Expect = 0.41
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 80 cgaacacgccaatctg 95
||||||||||||||||
Sbjct: 479 cgaacacgccaatctg 464
>IS1632
Length = 1394
Score = 32.2 bits (16), Expect = 0.41
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 87 gccaatctgacgctgc 102
||||||||||||||||
Sbjct: 237 gccaatctgacgctgc 252
>ISHhu13
Length = 1374
Score = 30.2 bits (15), Expect = 1.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 117 gacgaccacgcctcg 131
|||||||||||||||
Sbjct: 474 gacgaccacgcctcg 488
>ISHli10
Length = 1055
Score = 30.2 bits (15), Expect = 1.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 77 cgccgaacacgccaa 91
|||||||||||||||
Sbjct: 743 cgccgaacacgccaa 757
>ISNma5
Length = 1055
Score = 30.2 bits (15), Expect = 1.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 77 cgccgaacacgccaa 91
|||||||||||||||
Sbjct: 743 cgccgaacacgccaa 757
>ISRm20
Length = 1265
Score = 30.2 bits (15), Expect = 1.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 40 cggcgcaggccatga 54
|||||||||||||||
Sbjct: 618 cggcgcaggccatga 604
>ISApr13
Length = 1556
Score = 30.2 bits (15), Expect = 1.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 153 ggcgatctcgccgtg 167
|||||||||||||||
Sbjct: 1350 ggcgatctcgccgtg 1336
>ISApr12
Length = 1524
Score = 30.2 bits (15), Expect = 1.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 153 ggcgatctcgccgtg 167
|||||||||||||||
Sbjct: 1318 ggcgatctcgccgtg 1304
>ISMpo1
Length = 888
Score = 30.2 bits (15), Expect = 1.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 162 gccgtgcttgtcgac 176
|||||||||||||||
Sbjct: 413 gccgtgcttgtcgac 399
>ISMno16
Length = 1404
Score = 28.2 bits (14), Expect = 6.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 239 cgagcaactgcgca 252
||||||||||||||
Sbjct: 890 cgagcaactgcgca 903
>ISHamu1
Length = 1475
Score = 28.2 bits (14), Expect = 6.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 74 gcacgccgaacacg 87
||||||||||||||
Sbjct: 1184 gcacgccgaacacg 1171
>ISHaru1
Length = 1488
Score = 28.2 bits (14), Expect = 6.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 74 gcacgccgaacacg 87
||||||||||||||
Sbjct: 1185 gcacgccgaacacg 1172
>TnShfr1
Length = 5131
Score = 28.2 bits (14), Expect = 6.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 7 catcgacaccatgg 20
||||||||||||||
Sbjct: 4967 catcgacaccatgg 4954
>IS3509
Length = 1380
Score = 28.2 bits (14), Expect = 6.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 4 cgccatcgacacca 17
||||||||||||||
Sbjct: 1280 cgccatcgacacca 1293
>IS3503
Length = 1380
Score = 28.2 bits (14), Expect = 6.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 4 cgccatcgacacca 17
||||||||||||||
Sbjct: 1280 cgccatcgacacca 1293
>ISSaci1
Length = 1747
Score = 28.2 bits (14), Expect = 6.4
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 148 cctttggcgatctcgccg 165
|||| |||||||||||||
Sbjct: 1372 ccttcggcgatctcgccg 1389
>ISArsp6
Length = 26712
Score = 28.2 bits (14), Expect = 6.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 38 gccggcgcaggcca 51
||||||||||||||
Sbjct: 10330 gccggcgcaggcca 10343
>ISRsp8
Length = 1695
Score = 28.2 bits (14), Expect = 6.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 228 gatcgcatcgtcga 241
||||||||||||||
Sbjct: 1479 gatcgcatcgtcga 1466
>ISAar29
Length = 1385
Score = 28.2 bits (14), Expect = 6.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 156 gatctcgccgtgct 169
||||||||||||||
Sbjct: 476 gatctcgccgtgct 489
>ISAnsp6
Length = 1515
Score = 28.2 bits (14), Expect = 6.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 1 cctcgccatcgaca 14
||||||||||||||
Sbjct: 525 cctcgccatcgaca 538
>ISAau1
Length = 1257
Score = 28.2 bits (14), Expect = 6.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 7 catcgacaccatgg 20
||||||||||||||
Sbjct: 1081 catcgacaccatgg 1094
>ISAzo34
Length = 1439
Score = 28.2 bits (14), Expect = 6.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 135 acggcaacgccgcc 148
||||||||||||||
Sbjct: 459 acggcaacgccgcc 446
>ISThsp7
Length = 1920
Score = 28.2 bits (14), Expect = 6.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 135 acggcaacgccgcc 148
||||||||||||||
Sbjct: 872 acggcaacgccgcc 885
>ISCARN11
Length = 1133
Score = 28.2 bits (14), Expect = 6.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 275 cacccccgaagaca 288
||||||||||||||
Sbjct: 512 cacccccgaagaca 499
>ISAfe9
Length = 2503
Score = 28.2 bits (14), Expect = 6.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 60 acgctcgcccgact 73
||||||||||||||
Sbjct: 1618 acgctcgcccgact 1631
>ISApr2
Length = 1029
Score = 28.2 bits (14), Expect = 6.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 37 agccggcgcaggcc 50
||||||||||||||
Sbjct: 169 agccggcgcaggcc 156
>ISMva2
Length = 1966
Score = 28.2 bits (14), Expect = 6.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 271 ccggcacccccgaa 284
||||||||||||||
Sbjct: 1657 ccggcacccccgaa 1670
>ISAma2
Length = 1192
Score = 28.2 bits (14), Expect = 6.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 241 agcaactgcgcatg 254
||||||||||||||
Sbjct: 862 agcaactgcgcatg 875
>ISCte3
Length = 1203
Score = 28.2 bits (14), Expect = 6.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 42 gcgcaggccatgac 55
||||||||||||||
Sbjct: 1124 gcgcaggccatgac 1137
>ISDsh1
Length = 1326
Score = 28.2 bits (14), Expect = 6.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 227 agatcgcatcgtcg 240
||||||||||||||
Sbjct: 855 agatcgcatcgtcg 868
>ISCahy1
Length = 1832
Score = 28.2 bits (14), Expect = 6.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 178 ccttgtactacctc 191
||||||||||||||
Sbjct: 1247 ccttgtactacctc 1260
>ISXo5
Length = 1058
Score = 28.2 bits (14), Expect = 6.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 44 gcaggccatgaccc 57
||||||||||||||
Sbjct: 465 gcaggccatgaccc 478
>ISAzsp1
Length = 1309
Score = 28.2 bits (14), Expect = 6.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 189 ctcacgcacttccc 202
||||||||||||||
Sbjct: 293 ctcacgcacttccc 280
>ISAzo6
Length = 1925
Score = 28.2 bits (14), Expect = 6.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 153 ggcgatctcgccgt 166
||||||||||||||
Sbjct: 1231 ggcgatctcgccgt 1218
>IS493
Length = 1643
Score = 28.2 bits (14), Expect = 6.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 55 ccccgacgctcgcc 68
||||||||||||||
Sbjct: 1114 ccccgacgctcgcc 1127
>IS1600
Length = 2520
Score = 28.2 bits (14), Expect = 6.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 264 taggaggccggcac 277
||||||||||||||
Sbjct: 1127 taggaggccggcac 1114
>IS1373
Length = 817
Score = 28.2 bits (14), Expect = 6.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 64 tcgcccgactgcac 77
||||||||||||||
Sbjct: 779 tcgcccgactgcac 792
>IS1162
Length = 2634
Score = 28.2 bits (14), Expect = 6.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 240 gagcaactgcgcat 253
||||||||||||||
Sbjct: 2213 gagcaactgcgcat 2226
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_98_length_320_cov_0.897119_ID_5366
(320 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISHth1 | ISH6 | Halococcus thailandensis | 34 | 0.10 | |
| ISPa43 | Tn3 | Pseudomonas aeruginosa | 32 | 0.41 | |
| ISThsp16 | IS1182 | Thiomonas sp. | 32 | 0.41 | |
| IS6120 | IS256 | - | Mycobacterium smegmatis | 32 | 0.41 |
| TnAs3 | Tn3 | Aeromonas salmonicida | 30 | 1.6 | |
| ISGpo1 | IS256 | Gordonia polyisoprenivorans | 30 | 1.6 | |
| ISAzs18 | IS66 | Azospirillum sp. | 30 | 1.6 | |
| ISStsp7 | IS5 | ISL2 | Streptomyces sp | 30 | 1.6 |
| ISStsp6 | IS5 | ISL2 | Streptomyces sp | 30 | 1.6 |
| ISRm20 | IS481 | Sinorhizobium meliloti | 30 | 1.6 | |
| ISMlo5 | ISNCY | ISDol1 | Mesorhizobium loti | 30 | 1.6 |
| ISRsp17 | ISNCY | ISDol1 | Rhizobium sp. | 30 | 1.6 |
| ISRle10 | ISNCY | ISDol1 | Rhizobium leguminosarum | 30 | 1.6 |
| ISMno6 | IS6 | Methylobacterium nodulans | 30 | 1.6 | |
| ISAzo1 | IS1182 | Azoarcus sp. | 30 | 1.6 | |
| ISShha1 | ISNCY | IS1202 | Shewanella halifaxens | 30 | 1.6 |
| ISAZo16 | IS21 | Azoarcus sp. | 30 | 1.6 | |
| ISApr7 | IS1595 | ISNwi1 | Alpha proteobacterium | 30 | 1.6 |
| ISBlma9 | IS66 | Blastopirellula marina | 30 | 1.6 | |
| ISRta2 | IS256 | Ralstonia taiwanensis | 30 | 1.6 | |
| ISMpo1 | IS6 | Methylobacterium populi | 30 | 1.6 | |
| ISAzo4 | IS21 | Azoarcus sp. | 30 | 1.6 | |
| ISAe1 | ISL3 | - | Ralstonia eutropha | 30 | 1.6 |
| ISHarch20 | IS200/IS605 | IS1341 | Halophilic archaeon | 28 | 6.3 |
| ISMno24 | IS91 | Methylobacterium nodulans | 28 | 6.3 | |
| ISHut2 | IS200/IS605 | IS1341 | Halorhabdus utahensis | 28 | 6.3 |
| TnAs2 | Tn3 | Aeromonas salmonicida | 28 | 6.3 | |
| ISAs23 | IS1595 | ISPna2 | Aeromonas salmonicida | 28 | 6.3 |
| ISSen6 | IS200/IS605 | Salmonella enterica | 28 | 6.3 | |
| ISSiac5 | ISLre2 | Singulisphaera acidiphila | 28 | 6.3 | |
| ISSri1 | ISKra4 | ISKra4 | Streptomyces rimosus | 28 | 6.3 |
| ISNisp4 | IS256 | Nitrobacter sp. | 28 | 6.3 | |
| ISMysp7 | IS256 | Mycobacterium sp. | 28 | 6.3 | |
| ISAzs29 | Tn3 | Azospirillum sp. | 28 | 6.3 | |
| ISAzs24 | IS3 | IS51 | Azospirillum sp. | 28 | 6.3 |
| ISAzs7 | IS66 | ISBst12 | Azospirillum sp. | 28 | 6.3 |
| ISAzs3 | IS1380 | Azospirillum sp. | 28 | 6.3 | |
| ISCgl5 | IS5 | IS427 | Corynebacterium glutamicum | 28 | 6.3 |
| ISSdi1 | IS1182 | Streptomyces diastaticus | 28 | 6.3 | |
| ISRel19 | IS66 | Rhizobium etli | 28 | 6.3 | |
| ISPkr1 | IS21 | Paracoccus koreensis | 28 | 6.3 | |
| ISMno23 | IS91 | Methylobacterium nodulans | 28 | 6.3 | |
| ISMno13 | IS66 | Methylobacterium nodulans | 28 | 6.3 | |
| ISMch1 | IS3 | IS150 | Methylobacterium chloromethanicum | 28 | 6.3 |
| ISAzo2 | IS1182 | Azoarcus sp. | 28 | 6.3 | |
| ISMdi13 | IS256 | Methylobacterium dichloromethanicum | 28 | 6.3 | |
| ISStma11 | ISL3 | Stenotrophomonas maltophilia | 28 | 6.3 | |
| ISMex22 | Tn3 | Methylobacterium extorquens | 28 | 6.3 | |
| ISCARN14 | IS5 | IS1031 | Metagenomic data from CARNOULES | 28 | 6.3 |
| ISAli20 | Tn3 | Azospirillum lipoferum | 28 | 6.3 | |
| ISApr6 | IS66 | Alpha proteobacterium | 28 | 6.3 | |
| ISBad1 | IS21 | Bifidobacterium adolescentis | 28 | 6.3 | |
| ISFsp11 | IS66 | ISBst12 | Frankia sp. | 28 | 6.3 |
| ISRhru2 | IS66 | ISBst12 | Rhodospirillum rubrum | 28 | 6.3 |
| ISOba3 | IS1 | ISMhu11 | Oceanicola batsensis | 28 | 6.3 |
| ISCausp2 | IS1595 | ISNha5 | Caulobacter sp. | 28 | 6.3 |
| ISRme10 | IS30 | Ralstonia metallidurans | 28 | 6.3 | |
| ISHne4 | IS110 | Hyphomonas neptunium | 28 | 6.3 | |
| ISGbe2 | IS3 | IS2 | Granulibacter bethesdensis | 28 | 6.3 |
| ISPpa5 | IS66 | Paracoccus pantotrophus | 28 | 6.3 | |
| ISRso9 | IS5 | IS5 | Ralstonia solanacearum | 28 | 6.3 |
| ISMt3 | IS21 | - | Mycobacterium tuberculosis | 28 | 6.3 |
| ISMbo1 | IS21 | - | Mycobacterium bovis | 28 | 6.3 |
| IS1372 | IS3 | IS51 | Streptomyces lividans | 28 | 6.3 |
| IS1066 | IS630 | - | Pseudomonas sp. | 28 | 6.3 |
| IS1002 | IS481 | - | Bordetella parapertussis | 28 | 6.3 |
>ISHth1
Length = 1445
Score = 34.2 bits (17), Expect = 0.10
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 269 ccggcgggcacgagttcgacc 289
|||||| ||||||||||||||
Sbjct: 330 ccggcgagcacgagttcgacc 350
>ISPa43
Length = 19903
Score = 32.2 bits (16), Expect = 0.41
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 118 gatctcggtgccttcg 133
||||||||||||||||
Sbjct: 19720 gatctcggtgccttcg 19705
>ISThsp16
Length = 1602
Score = 32.2 bits (16), Expect = 0.41
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 154 ctcgatcttggccttg 169
||||||||||||||||
Sbjct: 716 ctcgatcttggccttg 701
>IS6120
Length = 1486
Score = 32.2 bits (16), Expect = 0.41
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 73 ggcgatggcgcgctcg 88
||||||||||||||||
Sbjct: 869 ggcgatggcgcgctcg 884
>TnAs3
Length = 18735
Score = 30.2 bits (15), Expect = 1.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 81 cgcgctcgatcagcg 95
|||||||||||||||
Sbjct: 2073 cgcgctcgatcagcg 2059
>ISGpo1
Length = 1432
Score = 30.2 bits (15), Expect = 1.6
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 70 gttggcgatggcgcgctcg 88
|||||||||||||| ||||
Sbjct: 842 gttggcgatggcgctctcg 860
>ISAzs18
Length = 2633
Score = 30.2 bits (15), Expect = 1.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 114 gcacgatctcggtgc 128
|||||||||||||||
Sbjct: 1363 gcacgatctcggtgc 1349
Score = 28.2 bits (14), Expect = 6.3
Identities = 20/22 (90%)
Strand = Plus / Minus
Query: 298 atcgcgcaccagcaccggcgtg 319
|||| ||||| |||||||||||
Sbjct: 1788 atcgagcaccggcaccggcgtg 1767
>ISStsp7
Length = 976
Score = 30.2 bits (15), Expect = 1.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 230 acctcgccctcgccg 244
|||||||||||||||
Sbjct: 893 acctcgccctcgccg 907
>ISStsp6
Length = 1476
Score = 30.2 bits (15), Expect = 1.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 230 acctcgccctcgccg 244
|||||||||||||||
Sbjct: 1390 acctcgccctcgccg 1404
>ISRm20
Length = 1265
Score = 30.2 bits (15), Expect = 1.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 261 cgcgccgcccggcgg 275
|||||||||||||||
Sbjct: 464 cgcgccgcccggcgg 450
>ISMlo5
Length = 1664
Score = 30.2 bits (15), Expect = 1.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 83 cgctcgatcagcggc 97
|||||||||||||||
Sbjct: 904 cgctcgatcagcggc 890
>ISRsp17
Length = 1664
Score = 30.2 bits (15), Expect = 1.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 83 cgctcgatcagcggc 97
|||||||||||||||
Sbjct: 906 cgctcgatcagcggc 892
Score = 28.2 bits (14), Expect = 6.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 14 aagatcacgcacac 27
||||||||||||||
Sbjct: 785 aagatcacgcacac 798
>ISRle10
Length = 1665
Score = 30.2 bits (15), Expect = 1.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 83 cgctcgatcagcggc 97
|||||||||||||||
Sbjct: 906 cgctcgatcagcggc 892
>ISMno6
Length = 816
Score = 30.2 bits (15), Expect = 1.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 289 ccgcgccacatcgcg 303
|||||||||||||||
Sbjct: 743 ccgcgccacatcgcg 729
>ISAzo1
Length = 1545
Score = 30.2 bits (15), Expect = 1.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 155 tcgatcttggccttg 169
|||||||||||||||
Sbjct: 690 tcgatcttggccttg 676
>ISShha1
Length = 1737
Score = 30.2 bits (15), Expect = 1.6
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 168 tgacgttggcgatcacatc 186
|||| ||||||||||||||
Sbjct: 193 tgactttggcgatcacatc 175
>ISAZo16
Length = 2485
Score = 30.2 bits (15), Expect = 1.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 79 ggcgcgctcgatcag 93
|||||||||||||||
Sbjct: 890 ggcgcgctcgatcag 904
>ISApr7
Length = 3923
Score = 30.2 bits (15), Expect = 1.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 289 ccgcgccacatcgcg 303
|||||||||||||||
Sbjct: 1902 ccgcgccacatcgcg 1916
>ISBlma9
Length = 2606
Score = 30.2 bits (15), Expect = 1.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 179 atcacatcgagcgcg 193
|||||||||||||||
Sbjct: 2031 atcacatcgagcgcg 2045
>ISRta2
Length = 1386
Score = 30.2 bits (15), Expect = 1.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 79 ggcgcgctcgatcag 93
|||||||||||||||
Sbjct: 207 ggcgcgctcgatcag 193
>ISMpo1
Length = 888
Score = 30.2 bits (15), Expect = 1.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 86 tcgatcagcggcgcg 100
|||||||||||||||
Sbjct: 298 tcgatcagcggcgcg 284
>ISAzo4
Length = 2757
Score = 30.2 bits (15), Expect = 1.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 92 agcggcgcgcggtcg 106
|||||||||||||||
Sbjct: 1712 agcggcgcgcggtcg 1698
>ISAe1
Length = 1313
Score = 30.2 bits (15), Expect = 1.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 168 tgacgttggcgatca 182
|||||||||||||||
Sbjct: 937 tgacgttggcgatca 923
>ISHarch20
Length = 1533
Score = 28.2 bits (14), Expect = 6.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 232 ctcgccctcgccgt 245
||||||||||||||
Sbjct: 695 ctcgccctcgccgt 682
>ISMno24
Length = 2157
Score = 28.2 bits (14), Expect = 6.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 65 ttcaggttggcgat 78
||||||||||||||
Sbjct: 1678 ttcaggttggcgat 1691
>ISHut2
Length = 1666
Score = 28.2 bits (14), Expect = 6.3
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 272 gcgggcacgagttcgacc 289
|||| |||||||||||||
Sbjct: 960 gcggtcacgagttcgacc 977
>TnAs2
Length = 8650
Score = 28.2 bits (14), Expect = 6.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 231 cctcgccctcgccg 244
||||||||||||||
Sbjct: 923 cctcgccctcgccg 936
>ISAs23
Length = 1032
Score = 28.2 bits (14), Expect = 6.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 301 gcgcaccagcaccg 314
||||||||||||||
Sbjct: 292 gcgcaccagcaccg 305
>ISSen6
Length = 1818
Score = 28.2 bits (14), Expect = 6.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 161 ttggccttgacgtt 174
||||||||||||||
Sbjct: 1429 ttggccttgacgtt 1416
>ISSiac5
Length = 1429
Score = 28.2 bits (14), Expect = 6.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 72 tggcgatggcgcgc 85
||||||||||||||
Sbjct: 139 tggcgatggcgcgc 152
>ISSri1
Length = 2269
Score = 28.2 bits (14), Expect = 6.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 260 ccgcgccgcccggc 273
||||||||||||||
Sbjct: 1403 ccgcgccgcccggc 1390
>ISNisp4
Length = 1418
Score = 28.2 bits (14), Expect = 6.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 75 cgatggcgcgctcg 88
||||||||||||||
Sbjct: 831 cgatggcgcgctcg 844
>ISMysp7
Length = 1397
Score = 28.2 bits (14), Expect = 6.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 130 ttcgggcaggccgg 143
||||||||||||||
Sbjct: 850 ttcgggcaggccgg 837
>ISAzs29
Length = 3897
Score = 28.2 bits (14), Expect = 6.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 198 ggccgaagcgcgcc 211
||||||||||||||
Sbjct: 1808 ggccgaagcgcgcc 1795
>ISAzs24
Length = 1325
Score = 28.2 bits (14), Expect = 6.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 264 gccgcccggcgggc 277
||||||||||||||
Sbjct: 474 gccgcccggcgggc 487
>ISAzs7
Length = 1455
Score = 28.2 bits (14), Expect = 6.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 70 gttggcgatggcgc 83
||||||||||||||
Sbjct: 667 gttggcgatggcgc 654
>ISAzs3
Length = 1613
Score = 28.2 bits (14), Expect = 6.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 228 ccacctcgccctcg 241
||||||||||||||
Sbjct: 1407 ccacctcgccctcg 1420
>ISCgl5
Length = 961
Score = 28.2 bits (14), Expect = 6.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 132 cgggcaggccgggt 145
||||||||||||||
Sbjct: 932 cgggcaggccgggt 919
>ISSdi1
Length = 1789
Score = 28.2 bits (14), Expect = 6.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 227 gccacctcgccctc 240
||||||||||||||
Sbjct: 881 gccacctcgccctc 868
>ISRel19
Length = 2798
Score = 28.2 bits (14), Expect = 6.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 76 gatggcgcgctcga 89
||||||||||||||
Sbjct: 2448 gatggcgcgctcga 2461
>ISPkr1
Length = 2469
Score = 28.2 bits (14), Expect = 6.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 79 ggcgcgctcgatca 92
||||||||||||||
Sbjct: 1766 ggcgcgctcgatca 1779
>ISMno23
Length = 2271
Score = 28.2 bits (14), Expect = 6.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 65 ttcaggttggcgat 78
||||||||||||||
Sbjct: 542 ttcaggttggcgat 529
>ISMno13
Length = 2459
Score = 28.2 bits (14), Expect = 6.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 279 cgagttcgacccgc 292
||||||||||||||
Sbjct: 2186 cgagttcgacccgc 2173
>ISMch1
Length = 1294
Score = 28.2 bits (14), Expect = 6.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 199 gccgaagcgcgcca 212
||||||||||||||
Sbjct: 881 gccgaagcgcgcca 868
>ISAzo2
Length = 1545
Score = 28.2 bits (14), Expect = 6.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 155 tcgatcttggcctt 168
||||||||||||||
Sbjct: 699 tcgatcttggcctt 686
>ISMdi13
Length = 1416
Score = 28.2 bits (14), Expect = 6.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 75 cgatggcgcgctcg 88
||||||||||||||
Sbjct: 829 cgatggcgcgctcg 842
>ISStma11
Length = 4621
Score = 28.2 bits (14), Expect = 6.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 82 gcgctcgatcagcg 95
||||||||||||||
Sbjct: 2866 gcgctcgatcagcg 2879
>ISMex22
Length = 3864
Score = 28.2 bits (14), Expect = 6.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 256 gatgccgcgccgcc 269
||||||||||||||
Sbjct: 831 gatgccgcgccgcc 844
>ISCARN14
Length = 1226
Score = 28.2 bits (14), Expect = 6.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 196 ctggccgaagcgcg 209
||||||||||||||
Sbjct: 1165 ctggccgaagcgcg 1178
>ISAli20
Length = 3828
Score = 28.2 bits (14), Expect = 6.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 79 ggcgcgctcgatca 92
||||||||||||||
Sbjct: 1302 ggcgcgctcgatca 1289
>ISApr6
Length = 2479
Score = 28.2 bits (14), Expect = 6.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 76 gatggcgcgctcga 89
||||||||||||||
Sbjct: 2241 gatggcgcgctcga 2228
>ISBad1
Length = 2525
Score = 28.2 bits (14), Expect = 6.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 27 ccgcggcgacgatc 40
||||||||||||||
Sbjct: 1518 ccgcggcgacgatc 1505
>ISFsp11
Length = 1836
Score = 28.2 bits (14), Expect = 6.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 231 cctcgccctcgccg 244
||||||||||||||
Sbjct: 1716 cctcgccctcgccg 1729
>ISRhru2
Length = 1443
Score = 28.2 bits (14), Expect = 6.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 82 gcgctcgatcagcg 95
||||||||||||||
Sbjct: 145 gcgctcgatcagcg 132
>ISOba3
Length = 2598
Score = 28.2 bits (14), Expect = 6.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 290 cgcgccacatcgcg 303
||||||||||||||
Sbjct: 1166 cgcgccacatcgcg 1179
>ISCausp2
Length = 7915
Score = 28.2 bits (14), Expect = 6.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 87 cgatcagcggcgcg 100
||||||||||||||
Sbjct: 3712 cgatcagcggcgcg 3725
>ISRme10
Length = 1529
Score = 28.2 bits (14), Expect = 6.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 67 caggttggcgatgg 80
||||||||||||||
Sbjct: 70 caggttggcgatgg 83
>ISHne4
Length = 1166
Score = 28.2 bits (14), Expect = 6.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 198 ggccgaagcgcgcc 211
||||||||||||||
Sbjct: 736 ggccgaagcgcgcc 749
>ISGbe2
Length = 1352
Score = 28.2 bits (14), Expect = 6.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 100 gcggtcgtacaccg 113
||||||||||||||
Sbjct: 543 gcggtcgtacaccg 530
>ISPpa5
Length = 2829
Score = 28.2 bits (14), Expect = 6.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 83 cgctcgatcagcgg 96
||||||||||||||
Sbjct: 1626 cgctcgatcagcgg 1613
>ISRso9
Length = 1483
Score = 28.2 bits (14), Expect = 6.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 254 gtgatgccgcgccg 267
||||||||||||||
Sbjct: 1204 gtgatgccgcgccg 1191
>ISMt3
Length = 2213
Score = 28.2 bits (14), Expect = 6.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 300 cgcgcaccagcacc 313
||||||||||||||
Sbjct: 1107 cgcgcaccagcacc 1094
>ISMbo1
Length = 2212
Score = 28.2 bits (14), Expect = 6.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 300 cgcgcaccagcacc 313
||||||||||||||
Sbjct: 1107 cgcgcaccagcacc 1094
>IS1372
Length = 1304
Score = 28.2 bits (14), Expect = 6.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 84 gctcgatcagcggc 97
||||||||||||||
Sbjct: 528 gctcgatcagcggc 515
>IS1066
Length = 1137
Score = 28.2 bits (14), Expect = 6.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 70 gttggcgatggcgc 83
||||||||||||||
Sbjct: 410 gttggcgatggcgc 423
>IS1002
Length = 1030
Score = 28.2 bits (14), Expect = 6.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 163 ggccttgacgttgg 176
||||||||||||||
Sbjct: 843 ggccttgacgttgg 830
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_99_length_319_cov_0.61157_ID_5368
(319 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| IS1491 | IS21 | - | Pseudomonas alcaligenes | 32 | 0.40 |
| ISPa39 | IS3 | IS407 | Pseudomonas aeruginosa | 30 | 1.6 |
| ISAcma29 | IS630 | Acaryochloris marina | 30 | 1.6 | |
| ISRhosp7 | IS110 | Rhodococcus sp. | 30 | 1.6 | |
| ISRhosp8 | IS110 | Rhodococcus sp. | 30 | 1.6 | |
| ISEc20 | IS110 | Escherichia coli | 30 | 1.6 | |
| ISRhosp1 | IS3 | IS3 | Rhodococcus sp. | 30 | 1.6 |
| ISSfl4 | IS110 | - | Shigella flexneri | 30 | 1.6 |
| IS1489v1 | ISL3 | - | Pseudomonas putida | 30 | 1.6 |
| IS1328 | IS110 | IS1111 | Yersinia enterocolitica | 30 | 1.6 |
| ISHarch18 | IS200/IS605 | IS1341 | Halophilic archaeon | 28 | 6.3 |
| ISNaoc6 | IS200/IS605 | IS1341 | Natronococcus occultus | 28 | 6.3 |
| ISNamo21 | IS200/IS605 | IS1341 | Natronomonas moolapensis | 28 | 6.3 |
| ISIde1 | ISL3 | Ideonella dechloratans | 28 | 6.3 | |
| ISVa5 | IS66 | Vibrio anguillarum | 28 | 6.3 | |
| ISVsp9 | IS1182 | Verrucomicrobium spinosum | 28 | 6.3 | |
| ISVsp6 | ISAs1 | Verrucomicrobium spinosum | 28 | 6.3 | |
| ISBuce2 | IS5 | Burkholderia cepacia | 28 | 6.3 | |
| ISMex10 | ISL3 | Methylobacterium extorquens | 28 | 6.3 | |
| ISMex2 | IS481 | Methylobacterium extorquens | 28 | 6.3 | |
| ISVsp18 | ISAs1 | Verrucomicrobium spinosum | 28 | 6.3 | |
| ISAzo26 | IS91 | Azoarcus sp. | 28 | 6.3 | |
| ISAzo14 | IS1634 | Azoarcus sp. | 28 | 6.3 | |
| ISThsp9 | Tn3 | Thiomonas sp. | 28 | 6.3 | |
| ISThsp4 | IS3 | IS3 | Thiomonas sp. | 28 | 6.3 |
| ISSba3 | IS3 | IS3 | Shewanella baltica | 28 | 6.3 |
| ISLrh4 | ISLre2 | Lactobacillus rhamnosus | 28 | 6.3 | |
| ISPpa1 | IS256 | Paracoccus pantotrophus | 28 | 6.3 | |
| ISPfl1 | IS110 | IS1111 | Pseudomonas fluorescens | 28 | 6.3 |
| ISSod1 | IS3 | IS3 | Shewanella oneidensis | 28 | 6.3 |
| ISBlo5 | IS256 | Bifidobacterium longum | 28 | 6.3 | |
| ISXc4 | Tn3 | - | Xanthomonas campestris | 28 | 6.3 |
| IS870 | IS630 | - | Agrobacterium vitis | 28 | 6.3 |
| IS1404 | IS3 | IS407 | Xanthomonas campestris | 28 | 6.3 |
| IS1137 | IS3 | IS51 | Mycobacterium smegmatis | 28 | 6.3 |
>IS1491
Length = 2481
Score = 32.2 bits (16), Expect = 0.40
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 163 tcgccagattgcggtc 178
||||||||||||||||
Sbjct: 188 tcgccagattgcggtc 203
>ISPa39
Length = 1254
Score = 30.2 bits (15), Expect = 1.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 52 ccgcgcgttctccgc 66
|||||||||||||||
Sbjct: 257 ccgcgcgttctccgc 243
>ISAcma29
Length = 1210
Score = 30.2 bits (15), Expect = 1.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 156 cctccattcgccaga 170
|||||||||||||||
Sbjct: 582 cctccattcgccaga 568
>ISRhosp7
Length = 1455
Score = 30.2 bits (15), Expect = 1.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 55 cgcgttctccgccct 69
|||||||||||||||
Sbjct: 1258 cgcgttctccgccct 1272
>ISRhosp8
Length = 1439
Score = 30.2 bits (15), Expect = 1.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 55 cgcgttctccgccct 69
|||||||||||||||
Sbjct: 1241 cgcgttctccgccct 1255
>ISEc20
Length = 1459
Score = 30.2 bits (15), Expect = 1.6
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 122 tttaccgacatcatcgccg 140
||||||||||||| |||||
Sbjct: 291 tttaccgacatcaacgccg 273
>ISRhosp1
Length = 1321
Score = 30.2 bits (15), Expect = 1.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 52 ccgcgcgttctccgc 66
|||||||||||||||
Sbjct: 309 ccgcgcgttctccgc 295
>ISSfl4
Length = 1451
Score = 30.2 bits (15), Expect = 1.6
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 122 tttaccgacatcatcgccg 140
||||||||||||| |||||
Sbjct: 291 tttaccgacatcaacgccg 273
>IS1489v1
Length = 1898
Score = 30.2 bits (15), Expect = 1.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 133 catcgccgccgtgcg 147
|||||||||||||||
Sbjct: 995 catcgccgccgtgcg 1009
>IS1328
Length = 1343
Score = 30.2 bits (15), Expect = 1.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 22 cctcagcgtcgatga 36
|||||||||||||||
Sbjct: 352 cctcagcgtcgatga 338
>ISHarch18
Length = 1608
Score = 28.2 bits (14), Expect = 6.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 198 tggcgcgggatgtt 211
||||||||||||||
Sbjct: 131 tggcgcgggatgtt 118
>ISNaoc6
Length = 1474
Score = 28.2 bits (14), Expect = 6.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 18 gcttcctcagcgtc 31
||||||||||||||
Sbjct: 738 gcttcctcagcgtc 725
>ISNamo21
Length = 1836
Score = 28.2 bits (14), Expect = 6.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 282 acgccatcaccggc 295
||||||||||||||
Sbjct: 732 acgccatcaccggc 745
>ISIde1
Length = 1448
Score = 28.2 bits (14), Expect = 6.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 134 atcgccgccgtgcg 147
||||||||||||||
Sbjct: 719 atcgccgccgtgcg 706
>ISVa5
Length = 2381
Score = 28.2 bits (14), Expect = 6.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 78 aaaaggtgcgcctg 91
||||||||||||||
Sbjct: 1929 aaaaggtgcgcctg 1942
>ISVsp9
Length = 1730
Score = 28.2 bits (14), Expect = 6.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 64 cgccctggggacgg 77
||||||||||||||
Sbjct: 629 cgccctggggacgg 642
>ISVsp6
Length = 1241
Score = 28.2 bits (14), Expect = 6.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 218 tggcgcgatgccgg 231
||||||||||||||
Sbjct: 560 tggcgcgatgccgg 573
>ISBuce2
Length = 1345
Score = 28.2 bits (14), Expect = 6.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 306 ttcgtcaggtgatg 319
||||||||||||||
Sbjct: 1092 ttcgtcaggtgatg 1105
>ISMex10
Length = 1754
Score = 28.2 bits (14), Expect = 6.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 135 tcgccgccgtgcgg 148
||||||||||||||
Sbjct: 963 tcgccgccgtgcgg 976
>ISMex2
Length = 1031
Score = 28.2 bits (14), Expect = 6.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 85 gcgcctgaccggcg 98
||||||||||||||
Sbjct: 334 gcgcctgaccggcg 347
>ISVsp18
Length = 1241
Score = 28.2 bits (14), Expect = 6.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 218 tggcgcgatgccgg 231
||||||||||||||
Sbjct: 560 tggcgcgatgccgg 573
>ISAzo26
Length = 2604
Score = 28.2 bits (14), Expect = 6.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 130 catcatcgccgccg 143
||||||||||||||
Sbjct: 1414 catcatcgccgccg 1427
>ISAzo14
Length = 1925
Score = 28.2 bits (14), Expect = 6.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 259 cagcctcgatgcgc 272
||||||||||||||
Sbjct: 622 cagcctcgatgcgc 635
>ISThsp9
Length = 6215
Score = 28.2 bits (14), Expect = 6.3
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 28 cgtcgatgaggtccgtca 45
||||||||||||| ||||
Sbjct: 1388 cgtcgatgaggtcggtca 1371
>ISThsp4
Length = 1289
Score = 28.2 bits (14), Expect = 6.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 56 gcgttctccgccct 69
||||||||||||||
Sbjct: 293 gcgttctccgccct 280
>ISSba3
Length = 1235
Score = 28.2 bits (14), Expect = 6.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 42 gtcacgtcacccgc 55
||||||||||||||
Sbjct: 758 gtcacgtcacccgc 745
>ISLrh4
Length = 1577
Score = 28.2 bits (14), Expect = 6.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 285 ccatcaccggccag 298
||||||||||||||
Sbjct: 901 ccatcaccggccag 888
>ISPpa1
Length = 1376
Score = 28.2 bits (14), Expect = 6.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 274 tcagtttcacgcca 287
||||||||||||||
Sbjct: 376 tcagtttcacgcca 389
>ISPfl1
Length = 1342
Score = 28.2 bits (14), Expect = 6.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 22 cctcagcgtcgatg 35
||||||||||||||
Sbjct: 366 cctcagcgtcgatg 353
>ISSod1
Length = 1235
Score = 28.2 bits (14), Expect = 6.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 42 gtcacgtcacccgc 55
||||||||||||||
Sbjct: 758 gtcacgtcacccgc 745
>ISBlo5
Length = 1366
Score = 28.2 bits (14), Expect = 6.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 39 tccgtcacgtcacc 52
||||||||||||||
Sbjct: 1227 tccgtcacgtcacc 1240
>ISXc4
Length = 6938
Score = 28.2 bits (14), Expect = 6.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 227 gccgggctgacggc 240
||||||||||||||
Sbjct: 593 gccgggctgacggc 580
>IS870
Length = 1146
Score = 28.2 bits (14), Expect = 6.3
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 127 cgacatcatcgccgccgt 144
|||||||||||| |||||
Sbjct: 1095 cgacatcatcgcagccgt 1112
>IS1404
Length = 1203
Score = 28.2 bits (14), Expect = 6.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 52 ccgcgcgttctccg 65
||||||||||||||
Sbjct: 260 ccgcgcgttctccg 247
>IS1137
Length = 1361
Score = 28.2 bits (14), Expect = 6.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 82 ggtgcgcctgaccg 95
||||||||||||||
Sbjct: 791 ggtgcgcctgaccg 804
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_100_length_318_cov_0.680498_ID_5370
(318 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISGob4 | IS66 | ISBst12 | Gemmata obscuriglobus | 34 | 0.10 |
| ISRhsp8 | IS5 | IS903 | Rhodobacter sphaeroides | 32 | 0.40 |
| ISVei5 | IS5 | IS5 | Verminephrobacter eiseniae | 32 | 0.40 |
| ISMtsp10 | IS1182 | Methylobacterium sp. | 30 | 1.6 | |
| ISGsu5 | IS110 | Geobacter sulfurreducens | 30 | 1.6 | |
| ISHwa26 | IS200/IS605 | Haloquadratum walsbyi | 28 | 6.3 | |
| ISNph23 | IS200/IS605 | IS1341 | Natronomonas pharaonis | 28 | 6.3 |
| ISHti2 | IS200/IS605 | IS1341 | Halorhabdus tiamatea | 28 | 6.3 |
| ISNpe23 | IS1595 | ISH4 | Natrinema pellirubrum | 28 | 6.3 |
| ISNpe11 | IS200/IS605 | IS1341 | Natrinema pellirubrum | 28 | 6.3 |
| ISGte1 | IS256 | Gordonia terrae | 28 | 6.3 | |
| ISRjo4 | IS256 | Rhodococcus jostii | 28 | 6.3 | |
| ISPa43 | Tn3 | Pseudomonas aeruginosa | 28 | 6.3 | |
| ISPso2 | IS5 | IS427 | Paracoccus solventivorans | 28 | 6.3 |
| ISShes11 | Tn3 | Shewanella sp. | 28 | 6.3 | |
| ISArsp6 | Tn3 | Arthrobacter sp. | 28 | 6.3 | |
| ISAzba8 | IS256 | Azospirillum brasilense | 28 | 6.3 | |
| ISMdi5 | IS3 | IS3 | Methylobacterium dichloromethanicum | 28 | 6.3 |
| ISCysp6 | ISAs1 | Cyanothece sp. | 28 | 6.3 | |
| ISAcma14 | IS630 | Acaryochloris marina | 28 | 6.3 | |
| ISCARN70 | IS4 | IS4Sa | Metagenomic data from CARNOULES | 28 | 6.3 |
| ISTth7 | IS5 | Thermus thermophilus | 28 | 6.3 | |
| ISRhsp4 | IS5 | IS427 | Rhodobacter sphaeroides | 28 | 6.3 |
| ISCysp2 | ISAs1 | Cyanothece sp. | 28 | 6.3 | |
| ISRhosp6 | IS481 | Rhodococcus sp. | 28 | 6.3 | |
| ISPpa2 | IS5 | IS427 | Paracoccus pantotrophus | 28 | 6.3 |
| IS1248B | IS5 | IS427 | Paracoccus denitrificans | 28 | 6.3 |
| IS1248A | IS5 | IS427 | Paracoccus denitrificans | 28 | 6.3 |
>ISGob4
Length = 1576
Score = 34.2 bits (17), Expect = 0.10
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 100 ttgtacttgtcgaggtg 116
|||||||||||||||||
Sbjct: 969 ttgtacttgtcgaggtg 953
>ISRhsp8
Length = 1054
Score = 32.2 bits (16), Expect = 0.40
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 287 cgcgggcgatctcggc 302
||||||||||||||||
Sbjct: 991 cgcgggcgatctcggc 976
>ISVei5
Length = 1620
Score = 32.2 bits (16), Expect = 0.40
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 284 tggcgcgggcgatctc 299
||||||||||||||||
Sbjct: 699 tggcgcgggcgatctc 684
>ISMtsp10
Length = 1778
Score = 30.2 bits (15), Expect = 1.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 284 tggcgcgggcgatct 298
|||||||||||||||
Sbjct: 151 tggcgcgggcgatct 165
>ISGsu5
Length = 1400
Score = 30.2 bits (15), Expect = 1.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 284 tggcgcgggcgatct 298
|||||||||||||||
Sbjct: 799 tggcgcgggcgatct 813
>ISHwa26
Length = 1570
Score = 28.2 bits (14), Expect = 6.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 259 tcgaccgtgatgcc 272
||||||||||||||
Sbjct: 701 tcgaccgtgatgcc 688
>ISNph23
Length = 1615
Score = 28.2 bits (14), Expect = 6.3
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 95 agtctttgtacttgtcga 112
|||||||||||| |||||
Sbjct: 275 agtctttgtactggtcga 258
>ISHti2
Length = 1616
Score = 28.2 bits (14), Expect = 6.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 259 tcgaccgtgatgcc 272
||||||||||||||
Sbjct: 1246 tcgaccgtgatgcc 1233
>ISNpe23
Length = 1001
Score = 28.2 bits (14), Expect = 6.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 248 cctcgatcttgtcg 261
||||||||||||||
Sbjct: 444 cctcgatcttgtcg 457
>ISNpe11
Length = 1613
Score = 28.2 bits (14), Expect = 6.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 259 tcgaccgtgatgcc 272
||||||||||||||
Sbjct: 1252 tcgaccgtgatgcc 1239
>ISGte1
Length = 1503
Score = 28.2 bits (14), Expect = 6.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 284 tggcgcgggcgatc 297
||||||||||||||
Sbjct: 974 tggcgcgggcgatc 987
>ISRjo4
Length = 1458
Score = 28.2 bits (14), Expect = 6.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 200 cctcgttcatctgc 213
||||||||||||||
Sbjct: 466 cctcgttcatctgc 453
>ISPa43
Length = 19903
Score = 28.2 bits (14), Expect = 6.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 289 cgggcgatctcggc 302
||||||||||||||
Sbjct: 12410 cgggcgatctcggc 12397
>ISPso2
Length = 832
Score = 28.2 bits (14), Expect = 6.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 173 acatgatctcgatg 186
||||||||||||||
Sbjct: 715 acatgatctcgatg 702
>ISShes11
Length = 7669
Score = 28.2 bits (14), Expect = 6.3
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 211 tgcatgtcgatggccttc 228
|||||| |||||||||||
Sbjct: 846 tgcatgccgatggccttc 829
>ISArsp6
Length = 26712
Score = 28.2 bits (14), Expect = 6.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 217 tcgatggccttctt 230
||||||||||||||
Sbjct: 16191 tcgatggccttctt 16204
>ISAzba8
Length = 1321
Score = 28.2 bits (14), Expect = 6.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 72 cggtcagggccgcc 85
||||||||||||||
Sbjct: 944 cggtcagggccgcc 931
>ISMdi5
Length = 1279
Score = 28.2 bits (14), Expect = 6.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 289 cgggcgatctcggc 302
||||||||||||||
Sbjct: 304 cgggcgatctcggc 291
>ISCysp6
Length = 1360
Score = 28.2 bits (14), Expect = 6.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 87 ttaaacgtagtctt 100
||||||||||||||
Sbjct: 1253 ttaaacgtagtctt 1266
>ISAcma14
Length = 1138
Score = 28.2 bits (14), Expect = 6.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 293 cgatctcggcaaag 306
||||||||||||||
Sbjct: 897 cgatctcggcaaag 884
>ISCARN70
Length = 1312
Score = 28.2 bits (14), Expect = 6.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 196 ttgccctcgttcat 209
||||||||||||||
Sbjct: 143 ttgccctcgttcat 130
>ISTth7
Length = 1029
Score = 28.2 bits (14), Expect = 6.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 281 ccatggcgcgggcg 294
||||||||||||||
Sbjct: 927 ccatggcgcgggcg 940
>ISRhsp4
Length = 840
Score = 28.2 bits (14), Expect = 6.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 173 acatgatctcgatg 186
||||||||||||||
Sbjct: 713 acatgatctcgatg 700
>ISCysp2
Length = 1360
Score = 28.2 bits (14), Expect = 6.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 87 ttaaacgtagtctt 100
||||||||||||||
Sbjct: 1253 ttaaacgtagtctt 1266
>ISRhosp6
Length = 1091
Score = 28.2 bits (14), Expect = 6.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 259 tcgaccgtgatgcc 272
||||||||||||||
Sbjct: 798 tcgaccgtgatgcc 785
>ISPpa2
Length = 832
Score = 28.2 bits (14), Expect = 6.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 173 acatgatctcgatg 186
||||||||||||||
Sbjct: 715 acatgatctcgatg 702
>IS1248B
Length = 830
Score = 28.2 bits (14), Expect = 6.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 173 acatgatctcgatg 186
||||||||||||||
Sbjct: 714 acatgatctcgatg 701
>IS1248A
Length = 832
Score = 28.2 bits (14), Expect = 6.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 173 acatgatctcgatg 186
||||||||||||||
Sbjct: 715 acatgatctcgatg 702
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_101_length_317_cov_0.7625_ID_5372
(317 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISPa42 | Tn3 | Pseudomonas aeruginosa | 34 | 0.10 | |
| ISMsm3 | IS1380 | Mycobacterium smegmatis | 32 | 0.40 | |
| ISLxx3 | IS21 | Leifsonia xyli | 32 | 0.40 | |
| TnAs3 | Tn3 | Aeromonas salmonicida | 30 | 1.6 | |
| ISHti8 | IS5 | Halorhabdus tiamatea | 30 | 1.6 | |
| ISNpe19 | IS5 | Natrinema pellirubrum | 30 | 1.6 | |
| ISNpe17 | IS5 | Natrinema pellirubrum | 30 | 1.6 | |
| ISNamo4 | IS5 | Natronomonas moolapensis | 30 | 1.6 | |
| ISMex21 | IS630 | Methylobacterium extorquens | 30 | 1.6 | |
| ISHma6 | IS5 | Haloarcula marismortui | 30 | 1.6 | |
| ISBlo12 | IS607 | Bifidobacterium longum | 30 | 1.6 | |
| ISPpu4 | IS3 | IS3 | Pseudomonas putida | 30 | 1.6 |
| ISHade1 | IS200/IS605 | IS1341 | Haloferax denitrificans | 28 | 6.3 |
| ISHko4 | IS200/IS605 | IS1341 | Halorubrum kocurii | 28 | 6.3 |
| ISRel12 | IS481 | Rhizobium etli | 28 | 6.3 | |
| ISNpe18 | IS5 | Natrinema pellirubrum | 28 | 6.3 | |
| ISNpe16 | IS5 | Natrinema pellirubrum | 28 | 6.3 | |
| ISNpe15 | IS5 | Natrinema pellirubrum | 28 | 6.3 | |
| ISRli1 | ISKra4 | ISAzba1 | Roseobacter litoralis | 28 | 6.3 |
| ISTni2 | IS481 | Thioalkalivibrio nitratireducens | 28 | 6.3 | |
| ISNpe2 | IS5 | Natrinema pellirubrum | 28 | 6.3 | |
| ISHvo7 | IS5 | Haloferax volcanii | 28 | 6.3 | |
| ISHla6 | IS5 | Halorubrum lacusprofundi | 28 | 6.3 | |
| ISSav6 | IS5 | ISL2 | Streptomyces avermitilis | 28 | 6.3 |
| ISHwa20 | IS5 | Haloquadratum walsbyi | 28 | 6.3 | |
| ISMno9 | IS1182 | Methylobacterium nodulans | 28 | 6.3 | |
| ISBrsp2 | IS1182 | Bradyrhizobium sp. | 28 | 6.3 | |
| ISCARN60 | IS3 | IS3 | Metagenomic data from CARNOULES | 28 | 6.3 |
| ISSpu6 | IS3 | IS3 | Shewanella putrefaciens | 28 | 6.3 |
| ISRel3 | IS21 | Rhizobium etli | 28 | 6.3 | |
| ISNha1 | IS701 | Nitrobacter hamburgensis | 28 | 6.3 | |
| ISPasp2 | IS982 | Parachlamydia sp. | 28 | 6.3 | |
| ISRsp2 | IS21 | - | Rhizobium sp. | 28 | 6.3 |
| ISH11 | IS5 | Halobacterium salinarum | 28 | 6.3 | |
| IS1600 | IS21 | - | Ralstonia eutropha | 28 | 6.3 |
| ISHwa14 | IS5 | Haloquadratum walsbyi | 28 | 6.3 | |
| IS1536 | IS607 | Mycobacterium tuberculosis | 28 | 6.3 |
>ISPa42
Length = 16941
Score = 34.2 bits (17), Expect = 0.10
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 298 ttgtgatgccagcggtg 314
|||||||||||||||||
Sbjct: 3733 ttgtgatgccagcggtg 3749
>ISMsm3
Length = 1695
Score = 32.2 bits (16), Expect = 0.40
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 129 atgcgcgtcaccgcgt 144
||||||||||||||||
Sbjct: 1120 atgcgcgtcaccgcgt 1135
>ISLxx3
Length = 2637
Score = 32.2 bits (16), Expect = 0.40
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 299 tgtgatgccagcggtg 314
||||||||||||||||
Sbjct: 99 tgtgatgccagcggtg 114
>TnAs3
Length = 18735
Score = 30.2 bits (15), Expect = 1.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 247 ccgtcgcggcgcttg 261
|||||||||||||||
Sbjct: 10646 ccgtcgcggcgcttg 10660
Score = 30.2 bits (15), Expect = 1.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 247 ccgtcgcggcgcttg 261
|||||||||||||||
Sbjct: 13805 ccgtcgcggcgcttg 13819
Score = 28.2 bits (14), Expect = 6.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 192 gcgcgccggcactc 205
||||||||||||||
Sbjct: 5179 gcgcgccggcactc 5166
>ISHti8
Length = 1063
Score = 30.2 bits (15), Expect = 1.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 126 gcgatgcgcgtcacc 140
|||||||||||||||
Sbjct: 623 gcgatgcgcgtcacc 637
>ISNpe19
Length = 1063
Score = 30.2 bits (15), Expect = 1.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 126 gcgatgcgcgtcacc 140
|||||||||||||||
Sbjct: 623 gcgatgcgcgtcacc 637
>ISNpe17
Length = 1069
Score = 30.2 bits (15), Expect = 1.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 126 gcgatgcgcgtcacc 140
|||||||||||||||
Sbjct: 623 gcgatgcgcgtcacc 637
>ISNamo4
Length = 1069
Score = 30.2 bits (15), Expect = 1.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 125 tgcgatgcgcgtcac 139
|||||||||||||||
Sbjct: 622 tgcgatgcgcgtcac 636
>ISMex21
Length = 1040
Score = 30.2 bits (15), Expect = 1.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 239 ccaccgtcccgtcgc 253
|||||||||||||||
Sbjct: 35 ccaccgtcccgtcgc 21
>ISHma6
Length = 1069
Score = 30.2 bits (15), Expect = 1.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 126 gcgatgcgcgtcacc 140
|||||||||||||||
Sbjct: 623 gcgatgcgcgtcacc 637
>ISBlo12
Length = 2003
Score = 30.2 bits (15), Expect = 1.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 42 cgcatcggacgcgtg 56
|||||||||||||||
Sbjct: 1061 cgcatcggacgcgtg 1075
>ISPpu4
Length = 1663
Score = 30.2 bits (15), Expect = 1.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 166 tggtcggctgaagcc 180
|||||||||||||||
Sbjct: 259 tggtcggctgaagcc 273
>ISHade1
Length = 1528
Score = 28.2 bits (14), Expect = 6.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 249 gtcgcggcgcttgt 262
||||||||||||||
Sbjct: 1042 gtcgcggcgcttgt 1029
>ISHko4
Length = 1517
Score = 28.2 bits (14), Expect = 6.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 249 gtcgcggcgcttgt 262
||||||||||||||
Sbjct: 1029 gtcgcggcgcttgt 1016
>ISRel12
Length = 1002
Score = 28.2 bits (14), Expect = 6.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 165 atggtcggctgaag 178
||||||||||||||
Sbjct: 337 atggtcggctgaag 324
>ISNpe18
Length = 1070
Score = 28.2 bits (14), Expect = 6.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 126 gcgatgcgcgtcac 139
||||||||||||||
Sbjct: 623 gcgatgcgcgtcac 636
>ISNpe16
Length = 1069
Score = 28.2 bits (14), Expect = 6.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 126 gcgatgcgcgtcac 139
||||||||||||||
Sbjct: 623 gcgatgcgcgtcac 636
>ISNpe15
Length = 1069
Score = 28.2 bits (14), Expect = 6.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 126 gcgatgcgcgtcac 139
||||||||||||||
Sbjct: 623 gcgatgcgcgtcac 636
>ISRli1
Length = 1454
Score = 28.2 bits (14), Expect = 6.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 251 cgcggcgcttgtcg 264
||||||||||||||
Sbjct: 1222 cgcggcgcttgtcg 1235
>ISTni2
Length = 3451
Score = 28.2 bits (14), Expect = 6.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 188 cacggcgcgccggc 201
||||||||||||||
Sbjct: 2629 cacggcgcgccggc 2616
>ISNpe2
Length = 1069
Score = 28.2 bits (14), Expect = 6.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 126 gcgatgcgcgtcac 139
||||||||||||||
Sbjct: 623 gcgatgcgcgtcac 636
>ISHvo7
Length = 1069
Score = 28.2 bits (14), Expect = 6.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 126 gcgatgcgcgtcac 139
||||||||||||||
Sbjct: 623 gcgatgcgcgtcac 636
>ISHla6
Length = 1069
Score = 28.2 bits (14), Expect = 6.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 126 gcgatgcgcgtcac 139
||||||||||||||
Sbjct: 623 gcgatgcgcgtcac 636
>ISSav6
Length = 1244
Score = 28.2 bits (14), Expect = 6.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 75 ggaccgacaggctc 88
||||||||||||||
Sbjct: 234 ggaccgacaggctc 247
>ISHwa20
Length = 1075
Score = 28.2 bits (14), Expect = 6.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 126 gcgatgcgcgtcac 139
||||||||||||||
Sbjct: 629 gcgatgcgcgtcac 642
>ISMno9
Length = 1548
Score = 28.2 bits (14), Expect = 6.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 5 ccagcctgatccgg 18
||||||||||||||
Sbjct: 519 ccagcctgatccgg 532
>ISBrsp2
Length = 1547
Score = 28.2 bits (14), Expect = 6.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 108 ttgctggcgctctg 121
||||||||||||||
Sbjct: 339 ttgctggcgctctg 352
>ISCARN60
Length = 1257
Score = 28.2 bits (14), Expect = 6.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 251 cgcggcgcttgtcg 264
||||||||||||||
Sbjct: 564 cgcggcgcttgtcg 577
>ISSpu6
Length = 1670
Score = 28.2 bits (14), Expect = 6.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 166 tggtcggctgaagc 179
||||||||||||||
Sbjct: 259 tggtcggctgaagc 272
>ISRel3
Length = 2308
Score = 28.2 bits (14), Expect = 6.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 173 ctgaagccgaccct 186
||||||||||||||
Sbjct: 1859 ctgaagccgaccct 1846
>ISNha1
Length = 1452
Score = 28.2 bits (14), Expect = 6.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 160 ccgccatggtcggc 173
||||||||||||||
Sbjct: 104 ccgccatggtcggc 91
>ISPasp2
Length = 1023
Score = 28.2 bits (14), Expect = 6.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 62 atcaatgagaaagg 75
||||||||||||||
Sbjct: 584 atcaatgagaaagg 597
>ISRsp2
Length = 2623
Score = 28.2 bits (14), Expect = 6.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 255 gcgcttgtcggcgc 268
||||||||||||||
Sbjct: 1905 gcgcttgtcggcgc 1892
>ISH11
Length = 1068
Score = 28.2 bits (14), Expect = 6.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 126 gcgatgcgcgtcac 139
||||||||||||||
Sbjct: 622 gcgatgcgcgtcac 635
>IS1600
Length = 2520
Score = 28.2 bits (14), Expect = 6.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 128 gatgcgcgtcaccg 141
||||||||||||||
Sbjct: 859 gatgcgcgtcaccg 872
>ISHwa14
Length = 1070
Score = 28.2 bits (14), Expect = 6.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 126 gcgatgcgcgtcac 139
||||||||||||||
Sbjct: 623 gcgatgcgcgtcac 636
>IS1536
Length = 1415
Score = 28.2 bits (14), Expect = 6.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 123 ggtgcgatgcgcgt 136
||||||||||||||
Sbjct: 1105 ggtgcgatgcgcgt 1118
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_102_length_313_cov_0.618644_ID_5374
(313 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISCARN110 | IS91 | Metagenomic data from CARNOULES | 42 | 4e-04 | |
| ISMyma3 | IS3 | IS51 | Mycobacterium marinum | 34 | 0.10 |
| ISThsp8 | IS1634 | Thiomonas sp. | 30 | 1.6 | |
| ISGka5 | IS66 | ISBst12 | Geobacillus kaustophilus | 30 | 1.6 |
| ISGst1 | IS66 | ISBst12 | Geobacillus stearothermophilus | 30 | 1.6 |
| ISMsm6 | IS1634 | Mycobacterium smegmatis | 30 | 1.6 | |
| ISRhosp6 | IS481 | Rhodococcus sp. | 30 | 1.6 | |
| ISMt2 | IS21 | - | Mycobacterium tuberculosis | 30 | 1.6 |
| ISBst12 | IS66 | ISBst12 | Bacillus stearothermophilus | 30 | 1.6 |
| TnXo19 | Tn3 | Xanthomonas oryzae | 28 | 6.2 | |
| ISHarch19 | IS200/IS605 | IS1341 | Halophilic archaeon | 28 | 6.2 |
| ISHla8 | ISH3 | Halorubrum lacusprofundi | 28 | 6.2 | |
| ISAzs32 | IS110 | IS1111 | Azospirillum sp. | 28 | 6.2 |
| ISGho1 | IS1182 | Grimontia hollisae | 28 | 6.2 | |
| ISBlo15 | IS200/IS605 | IS1341 | Bifidobacterium longum | 28 | 6.2 |
| ISBce19 | IS3 | IS150 | Bacillus cereus | 28 | 6.2 |
| ISCpe8 | IS1595 | ISPna2 | Clostridium perfringens | 28 | 6.2 |
| ISStsp3 | IS1380 | Streptomyces sp. | 28 | 6.2 | |
| ISThsp12 | IS1634 | Thiomonas sp. | 28 | 6.2 | |
| ISCARN16 | IS21 | Metagenomic data from CARNOULES | 28 | 6.2 | |
| ISKpn12 | IS5 | IS427 | Klebsiella pneumoniae | 28 | 6.2 |
| ISAau4 | Tn3 | Arthrobacter aurescens | 28 | 6.2 | |
| ISCba1 | IS1595 | ISPna2 | Clostridium bartlettii | 28 | 6.2 |
| ISNoc1 | IS3 | IS407 | Nitrosococcus oceani ATCC | 28 | 6.2 |
| ISPae1 | IS3 | IS407 | Prosthecochloris aestuarii | 28 | 6.2 |
| ISUnCu8 | IS4 | IS50 | uncultured bacterium | 28 | 6.2 |
| ISMysp2 | IS1595 | ISSod11 | Mycobacterium sp | 28 | 6.2 |
| ISMfl2 | IS1595 | ISSod11 | Mycobacterium flavescens | 28 | 6.2 |
| ISPa42 | Tn3 | Pseudomonas aeruginosa | 28 | 6.2 | |
| IS801 | IS91 | - | Pseudomonas syringae | 28 | 6.2 |
| ISPa45 | IS4 | IS4 | Pseudomonas aeruginosa | 28 | 6.2 |
| IS1181 | ISL3 | - | Staphylococcus aureus | 28 | 6.2 |
>ISCARN110
Length = 2294
Score = 42.1 bits (21), Expect = 4e-04
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 62 tagaacttcagaccgtacaggtcgagcttgaccgagctcca 102
|||||||||| |||||||||||| |||||| || ||||||
Sbjct: 351 tagaacttcaacccgtacaggtcgtgcttgagcgcgctcca 311
>ISMyma3
Length = 1364
Score = 34.2 bits (17), Expect = 0.10
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 114 cggacagatcagtgaag 130
|||||||||||||||||
Sbjct: 996 cggacagatcagtgaag 980
>ISThsp8
Length = 1929
Score = 30.2 bits (15), Expect = 1.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 132 actcgagcaactgcg 146
|||||||||||||||
Sbjct: 1712 actcgagcaactgcg 1726
>ISGka5
Length = 1610
Score = 30.2 bits (15), Expect = 1.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 189 cacggctcacggcgc 203
|||||||||||||||
Sbjct: 630 cacggctcacggcgc 644
>ISGst1
Length = 1613
Score = 30.2 bits (15), Expect = 1.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 189 cacggctcacggcgc 203
|||||||||||||||
Sbjct: 633 cacggctcacggcgc 647
>ISMsm6
Length = 1765
Score = 30.2 bits (15), Expect = 1.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 180 acgccccgacacggc 194
|||||||||||||||
Sbjct: 1101 acgccccgacacggc 1115
>ISRhosp6
Length = 1091
Score = 30.2 bits (15), Expect = 1.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 103 cgagtgcgtctcgga 117
|||||||||||||||
Sbjct: 857 cgagtgcgtctcgga 843
>ISMt2
Length = 2645
Score = 30.2 bits (15), Expect = 1.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 269 ccacgctggtcgacc 283
|||||||||||||||
Sbjct: 904 ccacgctggtcgacc 918
>ISBst12
Length = 1612
Score = 30.2 bits (15), Expect = 1.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 189 cacggctcacggcgc 203
|||||||||||||||
Sbjct: 632 cacggctcacggcgc 646
>TnXo19
Length = 18767
Score = 28.2 bits (14), Expect = 6.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 208 gtaggcttcgatgg 221
||||||||||||||
Sbjct: 12322 gtaggcttcgatgg 12309
>ISHarch19
Length = 1624
Score = 28.2 bits (14), Expect = 6.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 103 cgagtgcgtctcgg 116
||||||||||||||
Sbjct: 356 cgagtgcgtctcgg 343
>ISHla8
Length = 1460
Score = 28.2 bits (14), Expect = 6.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 278 tcgacctgcttcgc 291
||||||||||||||
Sbjct: 925 tcgacctgcttcgc 912
>ISAzs32
Length = 1601
Score = 28.2 bits (14), Expect = 6.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 298 cgcggtcatcctgc 311
||||||||||||||
Sbjct: 1060 cgcggtcatcctgc 1073
>ISGho1
Length = 1618
Score = 28.2 bits (14), Expect = 6.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 33 cacagggcttcttc 46
||||||||||||||
Sbjct: 752 cacagggcttcttc 765
>ISBlo15
Length = 1593
Score = 28.2 bits (14), Expect = 6.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 219 tggtcttgtgctgc 232
||||||||||||||
Sbjct: 1049 tggtcttgtgctgc 1036
>ISBce19
Length = 1445
Score = 28.2 bits (14), Expect = 6.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 96 agctccacgagtgc 109
||||||||||||||
Sbjct: 619 agctccacgagtgc 606
>ISCpe8
Length = 1964
Score = 28.2 bits (14), Expect = 6.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 40 cttcttcagcacat 53
||||||||||||||
Sbjct: 458 cttcttcagcacat 445
>ISStsp3
Length = 1925
Score = 28.2 bits (14), Expect = 6.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 43 cttcagcacatgct 56
||||||||||||||
Sbjct: 963 cttcagcacatgct 950
Score = 28.2 bits (14), Expect = 6.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 103 cgagtgcgtctcgg 116
||||||||||||||
Sbjct: 1615 cgagtgcgtctcgg 1602
>ISThsp12
Length = 2004
Score = 28.2 bits (14), Expect = 6.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 192 ggctcacggcgcgc 205
||||||||||||||
Sbjct: 1065 ggctcacggcgcgc 1052
>ISCARN16
Length = 2594
Score = 28.2 bits (14), Expect = 6.2
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 191 cggctcacggcgcgcgcg 208
|||| |||||||||||||
Sbjct: 343 cggcgcacggcgcgcgcg 360
>ISKpn12
Length = 842
Score = 28.2 bits (14), Expect = 6.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 217 gatggtcttgtgct 230
||||||||||||||
Sbjct: 337 gatggtcttgtgct 324
>ISAau4
Length = 3898
Score = 28.2 bits (14), Expect = 6.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 31 cacacagggcttct 44
||||||||||||||
Sbjct: 3308 cacacagggcttct 3321
>ISCba1
Length = 2623
Score = 28.2 bits (14), Expect = 6.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 40 cttcttcagcacat 53
||||||||||||||
Sbjct: 458 cttcttcagcacat 445
>ISNoc1
Length = 1204
Score = 28.2 bits (14), Expect = 6.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 153 tgagcgcatcgatg 166
||||||||||||||
Sbjct: 494 tgagcgcatcgatg 481
>ISPae1
Length = 1196
Score = 28.2 bits (14), Expect = 6.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 142 ctgcgcctcgctga 155
||||||||||||||
Sbjct: 235 ctgcgcctcgctga 222
>ISUnCu8
Length = 1509
Score = 28.2 bits (14), Expect = 6.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 78 acaggtcgagcttg 91
||||||||||||||
Sbjct: 1394 acaggtcgagcttg 1407
>ISMysp2
Length = 1095
Score = 28.2 bits (14), Expect = 6.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 103 cgagtgcgtctcgg 116
||||||||||||||
Sbjct: 590 cgagtgcgtctcgg 603
>ISMfl2
Length = 1095
Score = 28.2 bits (14), Expect = 6.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 103 cgagtgcgtctcgg 116
||||||||||||||
Sbjct: 590 cgagtgcgtctcgg 603
>ISPa42
Length = 16941
Score = 28.2 bits (14), Expect = 6.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 274 ctggtcgacctgct 287
||||||||||||||
Sbjct: 7645 ctggtcgacctgct 7658
>IS801
Length = 1512
Score = 28.2 bits (14), Expect = 6.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 24 cgcgcgccacacag 37
||||||||||||||
Sbjct: 1238 cgcgcgccacacag 1225
>ISPa45
Length = 1637
Score = 28.2 bits (14), Expect = 6.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 274 ctggtcgacctgct 287
||||||||||||||
Sbjct: 1239 ctggtcgacctgct 1252
>IS1181
Length = 1513
Score = 28.2 bits (14), Expect = 6.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 235 acccttgagtttta 248
||||||||||||||
Sbjct: 342 acccttgagtttta 329
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_103_length_312_cov_0.92766_ID_5376
(312 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISXoo5 | IS5 | IS5 | Xanthomonas oryzae | 32 | 0.40 |
| TnXo19 | Tn3 | Xanthomonas oryzae | 30 | 1.6 | |
| ISShes11 | Tn3 | Shewanella sp. | 30 | 1.6 | |
| ISVisp1 | IS3 | IS3 | Vibrio splendidus | 30 | 1.6 |
| ISHru2 | IS200/IS605 | IS605 | Halovivax ruber | 28 | 6.2 |
| ISNpe29 | IS200/IS605 | IS1341 | Natrinema pellirubrum | 28 | 6.2 |
| ISHla15 | IS200/IS605 | Halorubrum lacusprofundi | 28 | 6.2 | |
| ISPko4 | IS3 | IS150 | Paracoccus kondratievae | 28 | 6.2 |
| ISHbo4 | IS200/IS605 | IS605 | Halogeometricum borinquense | 28 | 6.2 |
| ISHmu6 | IS200/IS605 | Halomicrobium mukohataei | 28 | 6.2 | |
| ISSoEn3 | IS21 | Primary endosymbiont of Sitophilus oryzae | 28 | 6.2 | |
| ISSpal2 | IS5 | Sphingopyxis alaskensis | 28 | 6.2 | |
| ISMtsp13 | IS256 | Methylobacterium sp. | 28 | 6.2 | |
| ISEc31 | IS3 | IS3 | Escherichia coli | 28 | 6.2 |
| ISArsp6 | Tn3 | Arthrobacter sp. | 28 | 6.2 | |
| ISBco2 | IS1380 | Bacillus coagulans | 28 | 6.2 | |
| ISAfe9 | IS21 | Acidithiobacillus ferrooxidans | 28 | 6.2 | |
| ISFsp10 | IS66 | ISBst12 | Frankia sp. | 28 | 6.2 |
| ISAau4 | Tn3 | Arthrobacter aurescens | 28 | 6.2 | |
| ISNe2 | IS481 | Nitrosomonas europaea | 28 | 6.2 | |
| ISPpu14 | IS66 | Pseudomonas putida | 28 | 6.2 | |
| ISDssp1 | ISAzo13 | Desulfobacterium sp. | 28 | 6.2 | |
| IS1071 | Tn3 | - | Alcaligenes sp | 28 | 6.2 |
>ISXoo5
Length = 1607
Score = 32.2 bits (16), Expect = 0.40
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 217 gcgcgccgaccatcag 232
||||||||||||||||
Sbjct: 1106 gcgcgccgaccatcag 1091
>TnXo19
Length = 18767
Score = 30.2 bits (15), Expect = 1.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 56 tacgctggttaacgg 70
|||||||||||||||
Sbjct: 16210 tacgctggttaacgg 16224
Score = 28.2 bits (14), Expect = 6.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 149 gcccagccgatggc 162
||||||||||||||
Sbjct: 9379 gcccagccgatggc 9366
>ISShes11
Length = 7669
Score = 30.2 bits (15), Expect = 1.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 214 agagcgcgccgacca 228
|||||||||||||||
Sbjct: 3376 agagcgcgccgacca 3362
>ISVisp1
Length = 1267
Score = 30.2 bits (15), Expect = 1.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 166 tcatgcggggttcga 180
|||||||||||||||
Sbjct: 1209 tcatgcggggttcga 1195
>ISHru2
Length = 1942
Score = 28.2 bits (14), Expect = 6.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 117 agcaacgagaggaa 130
||||||||||||||
Sbjct: 1536 agcaacgagaggaa 1523
>ISNpe29
Length = 1597
Score = 28.2 bits (14), Expect = 6.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 117 agcaacgagaggaa 130
||||||||||||||
Sbjct: 1253 agcaacgagaggaa 1240
>ISHla15
Length = 1835
Score = 28.2 bits (14), Expect = 6.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 117 agcaacgagaggaa 130
||||||||||||||
Sbjct: 1489 agcaacgagaggaa 1476
>ISPko4
Length = 1524
Score = 28.2 bits (14), Expect = 6.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 103 gccatccccagacc 116
||||||||||||||
Sbjct: 1175 gccatccccagacc 1188
>ISHbo4
Length = 1835
Score = 28.2 bits (14), Expect = 6.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 117 agcaacgagaggaa 130
||||||||||||||
Sbjct: 1489 agcaacgagaggaa 1476
>ISHmu6
Length = 1889
Score = 28.2 bits (14), Expect = 6.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 117 agcaacgagaggaa 130
||||||||||||||
Sbjct: 1543 agcaacgagaggaa 1530
>ISSoEn3
Length = 2600
Score = 28.2 bits (14), Expect = 6.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 258 aacgcctggaccat 271
||||||||||||||
Sbjct: 1789 aacgcctggaccat 1776
>ISSpal2
Length = 1314
Score = 28.2 bits (14), Expect = 6.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 215 gagcgcgccgacca 228
||||||||||||||
Sbjct: 762 gagcgcgccgacca 749
>ISMtsp13
Length = 1428
Score = 28.2 bits (14), Expect = 6.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 215 gagcgcgccgacca 228
||||||||||||||
Sbjct: 1247 gagcgcgccgacca 1234
>ISEc31
Length = 1258
Score = 28.2 bits (14), Expect = 6.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 110 ccagaccagcaacg 123
||||||||||||||
Sbjct: 265 ccagaccagcaacg 278
>ISArsp6
Length = 26712
Score = 28.2 bits (14), Expect = 6.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 150 cccagccgatggcc 163
||||||||||||||
Sbjct: 24784 cccagccgatggcc 24771
>ISBco2
Length = 1574
Score = 28.2 bits (14), Expect = 6.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 43 tccatattttacat 56
||||||||||||||
Sbjct: 1505 tccatattttacat 1518
>ISAfe9
Length = 2503
Score = 28.2 bits (14), Expect = 6.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 66 aacggtaccgacag 79
||||||||||||||
Sbjct: 1531 aacggtaccgacag 1544
>ISFsp10
Length = 1713
Score = 28.2 bits (14), Expect = 6.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 218 cgcgccgaccatca 231
||||||||||||||
Sbjct: 745 cgcgccgaccatca 732
>ISAau4
Length = 3898
Score = 28.2 bits (14), Expect = 6.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 99 agcagccatcccca 112
||||||||||||||
Sbjct: 3384 agcagccatcccca 3371
>ISNe2
Length = 1005
Score = 28.2 bits (14), Expect = 6.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 78 agcagcattcccac 91
||||||||||||||
Sbjct: 333 agcagcattcccac 346
>ISPpu14
Length = 2383
Score = 28.2 bits (14), Expect = 6.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 87 cccactgggccaag 100
||||||||||||||
Sbjct: 1492 cccactgggccaag 1479
>ISDssp1
Length = 1305
Score = 28.2 bits (14), Expect = 6.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 123 gagaggaaaaccac 136
||||||||||||||
Sbjct: 1062 gagaggaaaaccac 1075
>IS1071
Length = 3201
Score = 28.2 bits (14), Expect = 6.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 30 ttggtggtctccat 43
||||||||||||||
Sbjct: 2154 ttggtggtctccat 2141
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_104_length_312_cov_75.9702_ID_5378
(312 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISPve1 | IS21 | Paracoccus versutus | 34 | 0.100 | |
| ISBsa1 | IS256 | Blastococcus saxobsidens | 32 | 0.40 | |
| ISFsp12 | ISAzo13 | Frankia sp. | 32 | 0.40 | |
| ISBrsp2 | IS1182 | Bradyrhizobium sp. | 32 | 0.40 | |
| ISAnsp9 | ISAs1 | Anaeromyxobacter sp. | 32 | 0.40 | |
| ISChy4 | IS21 | Carboxydothermus hydrogenoformans | 32 | 0.40 | |
| ISFsp3 | IS21 | Frankia sp. | 32 | 0.40 | |
| TnXo19 | Tn3 | Xanthomonas oryzae | 30 | 1.6 | |
| ISNma6 | IS630 | Natrialba magadii | 30 | 1.6 | |
| ISCap2 | IS5 | IS903 | Candidatus Accumulibacter phosphatis | 30 | 1.6 |
| ISRop2 | ISAzo13 | Rhodococcus opacus | 30 | 1.6 | |
| ISAar16 | IS110 | Arthrobacter arilaitensis | 30 | 1.6 | |
| ISGob3 | IS66 | ISBst12 | Gemmata obscuriglobus | 30 | 1.6 |
| ISH50 | IS1595 | ISH4 | Halobacterium salinarum | 30 | 1.6 |
| IS1389-B | IS3 | IS407 | Xanthomonas campestris | 30 | 1.6 |
| ISRel7 | IS110 | IS1111 | Rhizobium etli | 28 | 6.2 |
| ISHvo18 | IS200/IS605 | Haloferax volcanii | 28 | 6.2 | |
| ISGsi1 | IS256 | IS1249 | Gordonia sihwensis | 28 | 6.2 |
| ISPeth3 | IS256 | Pelotomaculum thermopropionicum | 28 | 6.2 | |
| ISPa36 | IS21 | Pseudomonas aeruginosa | 28 | 6.2 | |
| ISAzs29 | Tn3 | Azospirillum sp. | 28 | 6.2 | |
| ISAzs15 | ISAs1 | Azospirillum sp. | 28 | 6.2 | |
| ISSdi1 | IS1182 | Streptomyces diastaticus | 28 | 6.2 | |
| ISVsp5 | IS4 | IS4Sa | Verrucomicrobium spinosum | 28 | 6.2 |
| ISVsp1 | IS1634 | Verrucomicrobium spinosum | 28 | 6.2 | |
| ISBph3 | IS5 | Burkholderia phymatum | 28 | 6.2 | |
| ISNha8 | IS5 | Nitrobacter hamburgensis | 28 | 6.2 | |
| ISXoo14 | IS5 | Xanthomonas oryzae | 28 | 6.2 | |
| ISMpo6 | IS1182 | Methylobacterium populi | 28 | 6.2 | |
| ISPfr18 | ISL3 | Propionibacterium freudenreichii | 28 | 6.2 | |
| ISMyma7 | IS1380 | - | Mycobacterium marinum | 28 | 6.2 |
| ISRsp7 | IS1380 | Rhizobium sp. | 28 | 6.2 | |
| ISMdi12 | IS110 | IS1111 | Methylobacterium dichloromethanicum | 28 | 6.2 |
| ISAnsp4 | IS21 | Anaeromyxobacter sp. | 28 | 6.2 | |
| ISThsp18 | IS1182 | Thiomonas sp. | 28 | 6.2 | |
| ISAzo19 | IS66 | Azoarcus sp. | 28 | 6.2 | |
| ISAzo10 | IS3 | IS3 | Azoarcus sp. | 28 | 6.2 |
| ISCARN16 | IS21 | Metagenomic data from CARNOULES | 28 | 6.2 | |
| ISDge4 | IS66 | ISBst12 | Deinococcus geothermalis | 28 | 6.2 |
| ISPca3 | IS481 | Pelobacter carbinolicus | 28 | 6.2 | |
| ISBcen23 | IS3 | IS407 | Burkholderia cenocepacia | 28 | 6.2 |
| ISSav1 | IS4 | IS4 | Streptomyces avermitilis | 28 | 6.2 |
| ISMyma2 | IS1380 | Mycobacterium marinum | 28 | 6.2 | |
| IS900 | IS110 | - | Mycobacterium paratuberculosis | 28 | 6.2 |
| IS4811 | IS5 | IS1031 | Streptomyces lividans | 28 | 6.2 |
| IS1648 | IS5 | IS427 | Streptomyces coelicolor | 28 | 6.2 |
>ISPve1
Length = 2503
Score = 34.2 bits (17), Expect = 0.100
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 130 gcagcggactcagccgcgcac 150
||||||| |||||||||||||
Sbjct: 2428 gcagcggtctcagccgcgcac 2448
Score = 28.2 bits (14), Expect = 6.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 179 cagcggcatacggc 192
||||||||||||||
Sbjct: 343 cagcggcatacggc 356
>ISBsa1
Length = 1464
Score = 32.2 bits (16), Expect = 0.40
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 162 gaccgcgagggcgagc 177
||||||||||||||||
Sbjct: 241 gaccgcgagggcgagc 226
>ISFsp12
Length = 1730
Score = 32.2 bits (16), Expect = 0.40
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 74 tcggcgcggacaccgtcggc 93
||||||||||||| ||||||
Sbjct: 452 tcggcgcggacacggtcggc 471
>ISBrsp2
Length = 1547
Score = 32.2 bits (16), Expect = 0.40
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 290 atgatcctgcccgatc 305
||||||||||||||||
Sbjct: 227 atgatcctgcccgatc 212
>ISAnsp9
Length = 1704
Score = 32.2 bits (16), Expect = 0.40
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 61 gcgaccgagctgctcg 76
||||||||||||||||
Sbjct: 950 gcgaccgagctgctcg 965
>ISChy4
Length = 2172
Score = 32.2 bits (16), Expect = 0.40
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 180 agcggcatacggcagg 195
||||||||||||||||
Sbjct: 439 agcggcatacggcagg 424
>ISFsp3
Length = 2209
Score = 32.2 bits (16), Expect = 0.40
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 42 cgccgccggcgccgac 57
||||||||||||||||
Sbjct: 678 cgccgccggcgccgac 663
>TnXo19
Length = 18767
Score = 30.2 bits (15), Expect = 1.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 45 cgccggcgccgacgt 59
|||||||||||||||
Sbjct: 6547 cgccggcgccgacgt 6533
>ISNma6
Length = 1055
Score = 30.2 bits (15), Expect = 1.6
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 70 ctgctcggcgcggacaccg 88
||||||||||||| |||||
Sbjct: 681 ctgctcggcgcggtcaccg 699
>ISCap2
Length = 1123
Score = 30.2 bits (15), Expect = 1.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 30 tgacgcggccggcgc 44
|||||||||||||||
Sbjct: 440 tgacgcggccggcgc 426
>ISRop2
Length = 2171
Score = 30.2 bits (15), Expect = 1.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 74 tcggcgcggacaccg 88
|||||||||||||||
Sbjct: 466 tcggcgcggacaccg 452
Score = 28.2 bits (14), Expect = 6.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 34 gcggccggcgccgc 47
||||||||||||||
Sbjct: 1448 gcggccggcgccgc 1461
>ISAar16
Length = 1396
Score = 30.2 bits (15), Expect = 1.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 117 catcggctccggtgc 131
|||||||||||||||
Sbjct: 490 catcggctccggtgc 476
>ISGob3
Length = 1597
Score = 30.2 bits (15), Expect = 1.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 117 catcggctccggtgc 131
|||||||||||||||
Sbjct: 530 catcggctccggtgc 544
>ISH50
Length = 996
Score = 30.2 bits (15), Expect = 1.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 28 ggtgacgcggccggc 42
|||||||||||||||
Sbjct: 63 ggtgacgcggccggc 77
>IS1389-B
Length = 1203
Score = 30.2 bits (15), Expect = 1.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 7 aagtccggcgccgca 21
|||||||||||||||
Sbjct: 600 aagtccggcgccgca 614
>ISRel7
Length = 1342
Score = 28.2 bits (14), Expect = 6.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 27 cggtgacgcggccg 40
||||||||||||||
Sbjct: 380 cggtgacgcggccg 393
>ISHvo18
Length = 1892
Score = 28.2 bits (14), Expect = 6.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 21 actcgtcggtgacg 34
||||||||||||||
Sbjct: 216 actcgtcggtgacg 229
>ISGsi1
Length = 1310
Score = 28.2 bits (14), Expect = 6.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 71 tgctcggcgcggac 84
||||||||||||||
Sbjct: 1124 tgctcggcgcggac 1111
>ISPeth3
Length = 1584
Score = 28.2 bits (14), Expect = 6.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 6 gaagtccggcgccg 19
||||||||||||||
Sbjct: 1150 gaagtccggcgccg 1163
>ISPa36
Length = 2468
Score = 28.2 bits (14), Expect = 6.2
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 34 gcggccggcgccgccggc 51
||||| ||||||||||||
Sbjct: 455 gcggctggcgccgccggc 438
>ISAzs29
Length = 3897
Score = 28.2 bits (14), Expect = 6.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 38 ccggcgccgccggc 51
||||||||||||||
Sbjct: 986 ccggcgccgccggc 999
>ISAzs15
Length = 1263
Score = 28.2 bits (14), Expect = 6.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 165 cgcgagggcgagcc 178
||||||||||||||
Sbjct: 411 cgcgagggcgagcc 424
>ISSdi1
Length = 1789
Score = 28.2 bits (14), Expect = 6.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 69 gctgctcggcgcgg 82
||||||||||||||
Sbjct: 1504 gctgctcggcgcgg 1491
>ISVsp5
Length = 1426
Score = 28.2 bits (14), Expect = 6.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 190 ggcaggaaggtttg 203
||||||||||||||
Sbjct: 586 ggcaggaaggtttg 573
>ISVsp1
Length = 2082
Score = 28.2 bits (14), Expect = 6.2
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 41 gcgccgccggcgccgacg 58
|||| |||||||||||||
Sbjct: 1296 gcgcagccggcgccgacg 1279
>ISBph3
Length = 1345
Score = 28.2 bits (14), Expect = 6.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 83 acaccgtcggcacc 96
||||||||||||||
Sbjct: 419 acaccgtcggcacc 406
>ISNha8
Length = 1288
Score = 28.2 bits (14), Expect = 6.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 38 ccggcgccgccggc 51
||||||||||||||
Sbjct: 597 ccggcgccgccggc 584
>ISXoo14
Length = 1310
Score = 28.2 bits (14), Expect = 6.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 83 acaccgtcggcacc 96
||||||||||||||
Sbjct: 393 acaccgtcggcacc 380
>ISMpo6
Length = 1593
Score = 28.2 bits (14), Expect = 6.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 56 acgtggcgaccgag 69
||||||||||||||
Sbjct: 1409 acgtggcgaccgag 1422
>ISPfr18
Length = 1437
Score = 28.2 bits (14), Expect = 6.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 27 cggtgacgcggccg 40
||||||||||||||
Sbjct: 289 cggtgacgcggccg 302
>ISMyma7
Length = 1694
Score = 28.2 bits (14), Expect = 6.2
Identities = 20/22 (90%)
Strand = Plus / Plus
Query: 34 gcggccggcgccgccggcgccg 55
|||||| | |||||||||||||
Sbjct: 489 gcggcctgggccgccggcgccg 510
>ISRsp7
Length = 2024
Score = 28.2 bits (14), Expect = 6.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 66 cgagctgctcggcg 79
||||||||||||||
Sbjct: 278 cgagctgctcggcg 265
>ISMdi12
Length = 1371
Score = 28.2 bits (14), Expect = 6.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 86 ccgtcggcaccgga 99
||||||||||||||
Sbjct: 1099 ccgtcggcaccgga 1086
>ISAnsp4
Length = 2195
Score = 28.2 bits (14), Expect = 6.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 66 cgagctgctcggcg 79
||||||||||||||
Sbjct: 1433 cgagctgctcggcg 1420
>ISThsp18
Length = 1330
Score = 28.2 bits (14), Expect = 6.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 298 gcccgatccgcacc 311
||||||||||||||
Sbjct: 163 gcccgatccgcacc 176
>ISAzo19
Length = 2423
Score = 28.2 bits (14), Expect = 6.2
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 139 tcagccgcgcacccggtg 156
||||||||||||| ||||
Sbjct: 391 tcagccgcgcaccaggtg 374
>ISAzo10
Length = 1669
Score = 28.2 bits (14), Expect = 6.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 155 tgagcgtgaccgcg 168
||||||||||||||
Sbjct: 1571 tgagcgtgaccgcg 1558
>ISCARN16
Length = 2594
Score = 28.2 bits (14), Expect = 6.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 25 gtcggtgacgcggc 38
||||||||||||||
Sbjct: 417 gtcggtgacgcggc 404
>ISDge4
Length = 1453
Score = 28.2 bits (14), Expect = 6.2
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 260 aaacgggcgcaaacgtga 277
||||||||||||| ||||
Sbjct: 730 aaacgggcgcaaaggtga 747
>ISPca3
Length = 1077
Score = 28.2 bits (14), Expect = 6.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 265 ggcgcaaacgtgac 278
||||||||||||||
Sbjct: 232 ggcgcaaacgtgac 245
>ISBcen23
Length = 1195
Score = 28.2 bits (14), Expect = 6.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 31 gacgcggccggcgc 44
||||||||||||||
Sbjct: 614 gacgcggccggcgc 601
>ISSav1
Length = 1776
Score = 28.2 bits (14), Expect = 6.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 40 ggcgccgccggcgc 53
||||||||||||||
Sbjct: 278 ggcgccgccggcgc 265
>ISMyma2
Length = 1679
Score = 28.2 bits (14), Expect = 6.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 48 cggcgccgacgtgg 61
||||||||||||||
Sbjct: 589 cggcgccgacgtgg 602
>IS900
Length = 1451
Score = 28.2 bits (14), Expect = 6.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 39 cggcgccgccggcg 52
||||||||||||||
Sbjct: 437 cggcgccgccggcg 424
>IS4811
Length = 5396
Score = 28.2 bits (14), Expect = 6.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 261 aacgggcgcaaacg 274
||||||||||||||
Sbjct: 2428 aacgggcgcaaacg 2441
>IS1648
Length = 969
Score = 28.2 bits (14), Expect = 6.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 32 acgcggccggcgcc 45
||||||||||||||
Sbjct: 386 acgcggccggcgcc 399
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_105_length_311_cov_0.910256_ID_5380
(311 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISMysp6 | IS481 | Mycobacterium sp. | 32 | 0.39 | |
| ISMdi14B | IS110 | IS1111 | Methylobacterium dichloromethanicum DM4 | 30 | 1.6 |
| ISHhu8 | IS200/IS605 | IS1341 | Halobacterium hubeiense | 30 | 1.6 |
| ISAzs23 | IS3 | IS3 | Azospirillum sp. | 30 | 1.6 |
| ISMno13 | IS66 | Methylobacterium nodulans | 30 | 1.6 | |
| ISMdi14 | IS110 | IS1111 | Methylobacterium dichloromethanicum | 30 | 1.6 |
| ISAzo26 | IS91 | Azoarcus sp. | 30 | 1.6 | |
| ISAzo15 | IS66 | Azoarcus sp. | 30 | 1.6 | |
| ISXau4 | IS66 | Xanthobacter autotrophicus | 30 | 1.6 | |
| ISAzca2 | IS66 | Azorhizobium caulinodans | 30 | 1.6 | |
| ISScl1 | IS5 | IS1031 | Streptomyces clavuligerus | 30 | 1.6 |
| ISSfr3 | ISKra4 | ISAzba1 | Sinorhizobium fredii | 28 | 6.1 |
| ISRel11 | IS5 | IS427 | Rhizobium etli | 28 | 6.1 |
| ISAau2 | IS21 | Arthrobacter aurescens | 28 | 6.1 | |
| ISMex26 | ISL3 | Methylobacterium extorquens | 28 | 6.1 | |
| ISThsp19 | IS21 | Thiomonas sp. | 28 | 6.1 | |
| ISAzo41 | IS5 | IS5 | Azoarcus sp. | 28 | 6.1 |
| ISCARN61 | IS256 | Metagenomic data from CARNOULES | 28 | 6.1 | |
| ISCARN47 | IS256 | Metagenomic data from CARNOULES | 28 | 6.1 | |
| ISAzo11 | IS5 | IS5 | Azoarcus sp. | 28 | 6.1 |
| ISAli7 | IS256 | Azospirillum lipoferum | 28 | 6.1 | |
| ISCku6 | IS66 | ISBst12 | Candidatus Kuenenia stuttgartiensis | 28 | 6.1 |
| ISCausp2 | IS1595 | ISNha5 | Caulobacter sp. | 28 | 6.1 |
| ISDge3 | IS1 | Deinococcus geothermalis | 28 | 6.1 | |
| ISSpo6 | IS630 | Silicibacter pomeroyi | 28 | 6.1 | |
| ISPla1 | IS1595 | ISPna2 | Parvibaculum lavamentivorans | 28 | 6.1 |
| ISMav5 | IS481 | Mycobacterium avium | 28 | 6.1 | |
| ISMae7 | IS4 | IS50 | Microcystis aeruginosa | 28 | 6.1 |
| ISMysp1 | IS110 | Mycobacterium sp. | 28 | 6.1 | |
| ISPsy7 | IS110 | IS1111 | Pseudomonas syringae | 28 | 6.1 |
| ISMt3 | IS21 | - | Mycobacterium tuberculosis | 28 | 6.1 |
| ISMbo1 | IS21 | - | Mycobacterium bovis | 28 | 6.1 |
| ISMav2 | IS481 | - | Mycobacterium avium | 28 | 6.1 |
| ISH5 | IS4 | ISH8 | Halobacterium sp. | 28 | 6.1 |
| IS1395 | IS256 | - | Mycobacterium xenopi | 28 | 6.1 |
| IS1110 | IS110 | - | Mycobacterium avium | 28 | 6.1 |
>ISMysp6
Length = 1077
Score = 32.2 bits (16), Expect = 0.39
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 83 cgggcaccgagctggg 98
||||||||||||||||
Sbjct: 851 cgggcaccgagctggg 836
>ISMdi14B
Length = 1315
Score = 30.2 bits (15), Expect = 1.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 197 tcggccagcgggtca 211
|||||||||||||||
Sbjct: 473 tcggccagcgggtca 487
>ISHhu8
Length = 1420
Score = 30.2 bits (15), Expect = 1.6
Identities = 21/23 (91%)
Strand = Plus / Plus
Query: 224 gcaccatcacctgcaattacgac 246
|||||||||||| |||| |||||
Sbjct: 479 gcaccatcacctacaatgacgac 501
>ISAzs23
Length = 1596
Score = 30.2 bits (15), Expect = 1.6
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 183 gggcgacgccgacatcggc 201
|||||||||||||| ||||
Sbjct: 624 gggcgacgccgacagcggc 606
>ISMno13
Length = 2459
Score = 30.2 bits (15), Expect = 1.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 136 aacagccgcatcgac 150
|||||||||||||||
Sbjct: 2378 aacagccgcatcgac 2392
>ISMdi14
Length = 1316
Score = 30.2 bits (15), Expect = 1.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 197 tcggccagcgggtca 211
|||||||||||||||
Sbjct: 474 tcggccagcgggtca 488
>ISAzo26
Length = 2604
Score = 30.2 bits (15), Expect = 1.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 39 gatgggcccggcctg 53
|||||||||||||||
Sbjct: 1078 gatgggcccggcctg 1064
>ISAzo15
Length = 2441
Score = 30.2 bits (15), Expect = 1.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 136 aacagccgcatcgac 150
|||||||||||||||
Sbjct: 2358 aacagccgcatcgac 2372
>ISXau4
Length = 2458
Score = 30.2 bits (15), Expect = 1.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 136 aacagccgcatcgac 150
|||||||||||||||
Sbjct: 2377 aacagccgcatcgac 2391
>ISAzca2
Length = 2458
Score = 30.2 bits (15), Expect = 1.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 136 aacagccgcatcgac 150
|||||||||||||||
Sbjct: 2377 aacagccgcatcgac 2391
>ISScl1
Length = 1099
Score = 30.2 bits (15), Expect = 1.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 91 gagctgggcgaagat 105
|||||||||||||||
Sbjct: 493 gagctgggcgaagat 479
>ISSfr3
Length = 1448
Score = 28.2 bits (14), Expect = 6.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 138 cagccgcatcgaca 151
||||||||||||||
Sbjct: 961 cagccgcatcgaca 948
>ISRel11
Length = 862
Score = 28.2 bits (14), Expect = 6.1
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 70 gcgcgcacccgcccgggc 87
||||||||||| ||||||
Sbjct: 223 gcgcgcacccgaccgggc 206
>ISAau2
Length = 2222
Score = 28.2 bits (14), Expect = 6.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 75 cacccgcccgggca 88
||||||||||||||
Sbjct: 849 cacccgcccgggca 836
>ISMex26
Length = 1676
Score = 28.2 bits (14), Expect = 6.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 219 cgccggcaccatca 232
||||||||||||||
Sbjct: 481 cgccggcaccatca 468
>ISThsp19
Length = 2657
Score = 28.2 bits (14), Expect = 6.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 90 cgagctgggcgaag 103
||||||||||||||
Sbjct: 489 cgagctgggcgaag 502
>ISAzo41
Length = 1158
Score = 28.2 bits (14), Expect = 6.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 197 tcggccagcgggtc 210
||||||||||||||
Sbjct: 167 tcggccagcgggtc 154
>ISCARN61
Length = 1368
Score = 28.2 bits (14), Expect = 6.1
Identities = 23/26 (88%)
Strand = Plus / Plus
Query: 189 cgccgacatcggccagcgggtcaacg 214
|||||| |||| | ||||||||||||
Sbjct: 526 cgccgaaatcgacgagcgggtcaacg 551
>ISCARN47
Length = 1368
Score = 28.2 bits (14), Expect = 6.1
Identities = 23/26 (88%)
Strand = Plus / Plus
Query: 189 cgccgacatcggccagcgggtcaacg 214
|||||| |||| | ||||||||||||
Sbjct: 526 cgccgagatcgacgagcgggtcaacg 551
>ISAzo11
Length = 1280
Score = 28.2 bits (14), Expect = 6.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 197 tcggccagcgggtc 210
||||||||||||||
Sbjct: 165 tcggccagcgggtc 152
>ISAli7
Length = 1416
Score = 28.2 bits (14), Expect = 6.1
Identities = 20/22 (90%)
Strand = Plus / Plus
Query: 193 gacatcggccagcgggtcaacg 214
||||||| | ||||||||||||
Sbjct: 565 gacatcgacgagcgggtcaacg 586
>ISCku6
Length = 2571
Score = 28.2 bits (14), Expect = 6.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 126 tgaagtcaaaaaca 139
||||||||||||||
Sbjct: 1972 tgaagtcaaaaaca 1985
>ISCausp2
Length = 7915
Score = 28.2 bits (14), Expect = 6.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 215 ttggcgccggcacc 228
||||||||||||||
Sbjct: 4183 ttggcgccggcacc 4196
>ISDge3
Length = 748
Score = 28.2 bits (14), Expect = 6.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 165 caaccacctcgcct 178
||||||||||||||
Sbjct: 393 caaccacctcgcct 380
>ISSpo6
Length = 1052
Score = 28.2 bits (14), Expect = 6.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 293 gctccgacacccag 306
||||||||||||||
Sbjct: 229 gctccgacacccag 242
>ISPla1
Length = 1132
Score = 28.2 bits (14), Expect = 6.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 192 cgacatcggccagc 205
||||||||||||||
Sbjct: 215 cgacatcggccagc 202
>ISMav5
Length = 1357
Score = 28.2 bits (14), Expect = 6.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 195 catcggccagcggg 208
||||||||||||||
Sbjct: 567 catcggccagcggg 554
>ISMae7
Length = 1589
Score = 28.2 bits (14), Expect = 6.1
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 152 atcactcgaaagccaacc 169
||||||||||||| ||||
Sbjct: 937 atcactcgaaagcgaacc 954
>ISMysp1
Length = 1461
Score = 28.2 bits (14), Expect = 6.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 186 cgacgccgacatcg 199
||||||||||||||
Sbjct: 1008 cgacgccgacatcg 1021
>ISPsy7
Length = 1348
Score = 28.2 bits (14), Expect = 6.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 111 tctgggcaatttcg 124
||||||||||||||
Sbjct: 1271 tctgggcaatttcg 1258
>ISMt3
Length = 2213
Score = 28.2 bits (14), Expect = 6.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 75 cacccgcccgggca 88
||||||||||||||
Sbjct: 848 cacccgcccgggca 835
>ISMbo1
Length = 2212
Score = 28.2 bits (14), Expect = 6.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 75 cacccgcccgggca 88
||||||||||||||
Sbjct: 848 cacccgcccgggca 835
>ISMav2
Length = 1361
Score = 28.2 bits (14), Expect = 6.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 195 catcggccagcggg 208
||||||||||||||
Sbjct: 571 catcggccagcggg 558
>ISH5
Length = 1442
Score = 28.2 bits (14), Expect = 6.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 115 ggcaatttcgttga 128
||||||||||||||
Sbjct: 1126 ggcaatttcgttga 1139
>IS1395
Length = 1323
Score = 28.2 bits (14), Expect = 6.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 218 gcgccggcaccatc 231
||||||||||||||
Sbjct: 263 gcgccggcaccatc 276
>IS1110
Length = 1462
Score = 28.2 bits (14), Expect = 6.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 186 cgacgccgacatcg 199
||||||||||||||
Sbjct: 1007 cgacgccgacatcg 1020
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_106_length_310_cov_0.622318_ID_5382
(310 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISAzo28 | IS110 | Azoarcus sp. | 34 | 0.099 | |
| ISChy3 | IS481 | Carboxydothermus hydrogenoformans | 32 | 0.39 | |
| ISSbe1 | IS1595 | IS1595 | Shewanella benthica | 32 | 0.39 |
| ISPst4 | IS3 | IS51 | Pseudomonas stutzeri | 30 | 1.6 |
| IS1474 | IS21 | - | Pseudomonas alcaligenes | 30 | 1.6 |
| IS1162 | IS21 | - | Pseudomonas fluorescens | 30 | 1.6 |
| ISCysp23 | IS3 | IS150 | Cyanothece sp. | 28 | 6.1 |
| ISPsy30 | Tn3 | Pseudomonas syringae | 28 | 6.1 | |
| ISSyth2 | IS1182 | Symbiobacterium thermophilum | 28 | 6.1 | |
| ISVsp3 | IS66 | Verrucomicrobium spinosum | 28 | 6.1 | |
| ISMno14 | IS110 | IS1111 | Methylobacterium nodulans | 28 | 6.1 |
| ISPfr21 | IS481 | Propionibacterium freudenreichii | 28 | 6.1 | |
| ISAar35 | IS481 | Arthrobacter arilaitensis | 28 | 6.1 | |
| ISOan2 | IS1380 | Octadecabacter antarcticus | 28 | 6.1 | |
| ISThsp3 | IS66 | Thiomonas sp. | 28 | 6.1 | |
| ISSpu14 | IS5 | IS903 | Shewanella putrefaciens | 28 | 6.1 |
| ISOba3 | IS1 | ISMhu11 | Oceanicola batsensis | 28 | 6.1 |
| ISAzca1 | IS1595 | ISNha5 | Azorhizobium caulinodans | 28 | 6.1 |
| ISPosp6 | IS481 | Polaromonas sp. | 28 | 6.1 | |
| ISFal2 | IS6 | Frankia alni | 28 | 6.1 | |
| ISDra4 | IS630 | Deinococcus radiodurans | 28 | 6.1 | |
| ISVsa3 | IS91 | - | Vibrio salmonicida | 28 | 6.1 |
| ISRm12 | IS5 | IS5 | Sinorhizobium meliloti | 28 | 6.1 |
| ISDra2 | IS200/IS605 | - | Deinococcus radiodurans | 28 | 6.1 |
| IS8301 | IS200/IS605 | Deinococcus radiodurans | 28 | 6.1 |
>ISAzo28
Length = 1486
Score = 34.2 bits (17), Expect = 0.099
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 259 gcaggacgatcccctcc 275
|||||||||||||||||
Sbjct: 785 gcaggacgatcccctcc 801
>ISChy3
Length = 3098
Score = 32.2 bits (16), Expect = 0.39
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 64 gcgcaacaaaatccgg 79
||||||||||||||||
Sbjct: 417 gcgcaacaaaatccgg 402
>ISSbe1
Length = 1020
Score = 32.2 bits (16), Expect = 0.39
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 216 tggccatcatcggtca 231
||||||||||||||||
Sbjct: 597 tggccatcatcggtca 582
>ISPst4
Length = 1312
Score = 30.2 bits (15), Expect = 1.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 226 cggtcacgatgctga 240
|||||||||||||||
Sbjct: 402 cggtcacgatgctga 388
>IS1474
Length = 2633
Score = 30.2 bits (15), Expect = 1.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 223 catcggtcacgatgc 237
|||||||||||||||
Sbjct: 2546 catcggtcacgatgc 2532
>IS1162
Length = 2634
Score = 30.2 bits (15), Expect = 1.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 223 catcggtcacgatgc 237
|||||||||||||||
Sbjct: 2547 catcggtcacgatgc 2533
>ISCysp23
Length = 1283
Score = 28.2 bits (14), Expect = 6.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 212 ttggtggccatcat 225
||||||||||||||
Sbjct: 770 ttggtggccatcat 783
>ISPsy30
Length = 5167
Score = 28.2 bits (14), Expect = 6.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 227 ggtcacgatgctga 240
||||||||||||||
Sbjct: 1768 ggtcacgatgctga 1755
>ISSyth2
Length = 1687
Score = 28.2 bits (14), Expect = 6.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 67 caacaaaatccggg 80
||||||||||||||
Sbjct: 52 caacaaaatccggg 39
>ISVsp3
Length = 2446
Score = 28.2 bits (14), Expect = 6.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 259 gcaggacgatcccc 272
||||||||||||||
Sbjct: 573 gcaggacgatcccc 586
>ISMno14
Length = 1428
Score = 28.2 bits (14), Expect = 6.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 42 cctgacgcgtagcc 55
||||||||||||||
Sbjct: 998 cctgacgcgtagcc 1011
>ISPfr21
Length = 2632
Score = 28.2 bits (14), Expect = 6.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 226 cggtcacgatgctg 239
||||||||||||||
Sbjct: 1448 cggtcacgatgctg 1461
>ISAar35
Length = 1072
Score = 28.2 bits (14), Expect = 6.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 46 acgcgtagcccgga 59
||||||||||||||
Sbjct: 643 acgcgtagcccgga 630
>ISOan2
Length = 1655
Score = 28.2 bits (14), Expect = 6.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 231 acgatgctgaccgt 244
||||||||||||||
Sbjct: 349 acgatgctgaccgt 362
>ISThsp3
Length = 2455
Score = 28.2 bits (14), Expect = 6.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 274 ccagcccctgccca 287
||||||||||||||
Sbjct: 1181 ccagcccctgccca 1194
>ISSpu14
Length = 1052
Score = 28.2 bits (14), Expect = 6.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 251 gttcaaacgcagga 264
||||||||||||||
Sbjct: 729 gttcaaacgcagga 742
>ISOba3
Length = 2598
Score = 28.2 bits (14), Expect = 6.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 213 tggtggccatcatc 226
||||||||||||||
Sbjct: 557 tggtggccatcatc 544
>ISAzca1
Length = 4520
Score = 28.2 bits (14), Expect = 6.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 254 caaacgcaggacga 267
||||||||||||||
Sbjct: 3297 caaacgcaggacga 3310
>ISPosp6
Length = 1026
Score = 28.2 bits (14), Expect = 6.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 115 cggccttgcaggcc 128
||||||||||||||
Sbjct: 408 cggccttgcaggcc 395
>ISFal2
Length = 826
Score = 28.2 bits (14), Expect = 6.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 283 gcccacccgccgct 296
||||||||||||||
Sbjct: 715 gcccacccgccgct 728
>ISDra4
Length = 1048
Score = 28.2 bits (14), Expect = 6.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 18 ggcgttcgtggaga 31
||||||||||||||
Sbjct: 843 ggcgttcgtggaga 830
>ISVsa3
Length = 977
Score = 28.2 bits (14), Expect = 6.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 192 aagccgggcgccac 205
||||||||||||||
Sbjct: 919 aagccgggcgccac 932
>ISRm12
Length = 1481
Score = 28.2 bits (14), Expect = 6.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 271 cctccagcccctgc 284
||||||||||||||
Sbjct: 477 cctccagcccctgc 464
>ISDra2
Length = 1736
Score = 28.2 bits (14), Expect = 6.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 223 catcggtcacgatg 236
||||||||||||||
Sbjct: 1109 catcggtcacgatg 1096
>IS8301
Length = 1741
Score = 28.2 bits (14), Expect = 6.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 223 catcggtcacgatg 236
||||||||||||||
Sbjct: 1109 catcggtcacgatg 1096
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_107_length_309_cov_0.547414_ID_5384
(309 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISHhu8 | IS200/IS605 | IS1341 | Halobacterium hubeiense | 34 | 0.099 |
| ISKpn24 | IS66 | Klebsiella pneumoniae | 32 | 0.39 | |
| ISPfr15 | IS481 | Propionibacterium freudenreichii | 32 | 0.39 | |
| ISTsi1 | IS607 | Thermococcus sibiricus | 32 | 0.39 | |
| ISCur2 | IS256 | IS1249 | Corynebacterium urealyticum | 30 | 1.5 |
| ISAzs17 | Tn3 | Azospirillum sp. | 30 | 1.5 | |
| ISHph1 | IS5 | IS903 | Hoeflea phototrophica | 30 | 1.5 |
| ISMpo6 | IS1182 | Methylobacterium populi | 30 | 1.5 | |
| ISThi1 | IS5 | IS5 | Thioalkalivibrio sp. | 30 | 1.5 |
| ISGdi13 | IS1182 | Gluconacetobacter diazotrophicus | 30 | 1.5 | |
| ISPre2 | IS5 | IS5 | Pseudomonas resinovorans | 30 | 1.5 |
| ISBth4 | IS4 | IS231 | Bacillus thuringiensis | 30 | 1.5 |
| ISBce8 | IS4 | IS231 | Bacillus cereus | 30 | 1.5 |
| ISBce7 | IS4 | IS231 | Bacillus cereus | 30 | 1.5 |
| ISBce5 | IS4 | IS231 | Bacillus cereus | 30 | 1.5 |
| ISPsp1 | IS5 | IS5 | Pseudomonas sp | 30 | 1.5 |
| IS4811 | IS5 | IS1031 | Streptomyces lividans | 30 | 1.5 |
| IS1384 | IS5 | IS5 | Pseudomonas putida | 30 | 1.5 |
| IS1141 | IS3 | IS3 | Mycobacterium intracellulare | 30 | 1.5 |
| TnAs3 | Tn3 | Aeromonas salmonicida | 28 | 6.1 | |
| TnAs2 | Tn3 | Aeromonas salmonicida | 28 | 6.1 | |
| ISBsa1 | IS256 | Blastococcus saxobsidens | 28 | 6.1 | |
| ISSaci1 | ISAzo13 | Streptomyces acidiscabies | 28 | 6.1 | |
| ISSuac1 | IS256 | Sulfobacillus acidophilus | 28 | 6.1 | |
| ISNph8 | IS200/IS605 | IS1341 | Natronomonas pharaonis | 28 | 6.1 |
| ISRel24 | IS66 | Rhizobium etli | 28 | 6.1 | |
| ISPmar3 | IS5 | IS5 | Paracoccus marcusii | 28 | 6.1 |
| ISVsp10 | IS110 | IS1111 | Verrucomicrobium spinosum | 28 | 6.1 |
| ISVbsp2 | IS5 | IS5 | Vibrio sp. | 28 | 6.1 |
| ISMno33 | IS1182 | Methylobacterium nodulans | 28 | 6.1 | |
| ISMno23 | IS91 | Methylobacterium nodulans | 28 | 6.1 | |
| ISMno9 | IS1182 | Methylobacterium nodulans | 28 | 6.1 | |
| ISArsp6 | Tn3 | Arthrobacter sp. | 28 | 6.1 | |
| ISMpo3 | IS1380 | Methylobacterium populi | 28 | 6.1 | |
| ISBusp4 | IS1182 | Burkholderia sp. | 28 | 6.1 | |
| ISStma1 | IS481 | Stenotrophomonas maltophilia | 28 | 6.1 | |
| ISCARN85 | IS5 | IS427 | Metagenomic data from CARNOULES | 28 | 6.1 |
| ISOt4 | IS982 | Orientia tsutsugamushi | 28 | 6.1 | |
| ISKrh1 | IS481 | Kocuria rhizophila | 28 | 6.1 | |
| ISCARN20 | IS110 | Metagenomic data from CARNOULES | 28 | 6.1 | |
| ISAzca2 | IS66 | Azorhizobium caulinodans | 28 | 6.1 | |
| ISApr6 | IS66 | Alpha proteobacterium | 28 | 6.1 | |
| ISAli10 | IS66 | Azospirillum lipoferum | 28 | 6.1 | |
| ISAli3 | IS630 | Azospirillum lipoferum | 28 | 6.1 | |
| ISAau4 | Tn3 | Arthrobacter aurescens | 28 | 6.1 | |
| ISDge7 | IS5 | IS1031 | Deinococcus geothermalis | 28 | 6.1 |
| ISLxc2 | IS481 | Leifsonia xyli | 28 | 6.1 | |
| ISHar6 | IS110 | IS1111 | Herminiimonas arsenicoxydans | 28 | 6.1 |
| ISRm21 | ISAs1 | Sinorhizobium meliloti | 28 | 6.1 | |
| ISEc19 | IS481 | Escherichia coli | 28 | 6.1 | |
| ISYpe1 | IS3 | IS407 | Yersinia pestis | 28 | 6.1 |
| ISYps8 | IS3 | IS407 | Yersinia pseudotuberculosis | 28 | 6.1 |
| ISNmo2 | IS4 | IS4 | Nitrococcus mobilis | 28 | 6.1 |
| ISXac2 | IS3 | IS407 | Xanthomonas axonopodis | 28 | 6.1 |
| ISPasp2 | IS982 | Parachlamydia sp. | 28 | 6.1 | |
| ISvNY2A_2 | IS607 | Virus NY2A | 28 | 6.1 | |
| ISTfu1 | IS200/IS605 | Thermobifida fusca | 28 | 6.1 | |
| ISAli15 | IS66 | Azospirillum lipoferum | 28 | 6.1 | |
| ISLxx4 | IS481 | Leifsonia xyli | 28 | 6.1 | |
| ISSp1 | IS1380 | - | Sphingomonas paucimobilis | 28 | 6.1 |
| ISDeal1 | IS66 | Dethiobacter alkaliphilus | 28 | 6.1 | |
| ISRm9 | IS21 | - | Rhizobium meliloti | 28 | 6.1 |
| IS1412 | IS1380 | - | Sphingomonas sp | 28 | 6.1 |
| IS117 | IS110 | - | Streptomyces coelicolor | 28 | 6.1 |
>ISHhu8
Length = 1420
Score = 34.2 bits (17), Expect = 0.099
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 127 gcatcctcgacgacggc 143
|||||||||||||||||
Sbjct: 410 gcatcctcgacgacggc 426
>ISKpn24
Length = 2454
Score = 32.2 bits (16), Expect = 0.39
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 135 gacgacggctgggccg 150
||||||||||||||||
Sbjct: 2154 gacgacggctgggccg 2169
>ISPfr15
Length = 1097
Score = 32.2 bits (16), Expect = 0.39
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 127 gcatcctcgacgacggctgg 146
||||| ||||||||||||||
Sbjct: 153 gcatcgtcgacgacggctgg 172
>ISTsi1
Length = 1854
Score = 32.2 bits (16), Expect = 0.39
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 178 tcgccacggctggcct 193
||||||||||||||||
Sbjct: 1815 tcgccacggctggcct 1800
>ISCur2
Length = 1384
Score = 30.2 bits (15), Expect = 1.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 48 tgctggcctgcaacg 62
|||||||||||||||
Sbjct: 656 tgctggcctgcaacg 670
>ISAzs17
Length = 7252
Score = 30.2 bits (15), Expect = 1.5
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 245 caccgccagcgtacgcccc 263
|||||||||||| ||||||
Sbjct: 1187 caccgccagcgtccgcccc 1205
>ISHph1
Length = 1130
Score = 30.2 bits (15), Expect = 1.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 165 gcccgccaacgcctc 179
|||||||||||||||
Sbjct: 218 gcccgccaacgcctc 204
>ISMpo6
Length = 1593
Score = 30.2 bits (15), Expect = 1.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 40 gctcaccgtgctggc 54
|||||||||||||||
Sbjct: 948 gctcaccgtgctggc 962
>ISThi1
Length = 1191
Score = 30.2 bits (15), Expect = 1.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 193 tcgtcatcggcgccg 207
|||||||||||||||
Sbjct: 615 tcgtcatcggcgccg 601
>ISGdi13
Length = 1452
Score = 30.2 bits (15), Expect = 1.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 49 gctggcctgcaacgt 63
|||||||||||||||
Sbjct: 1080 gctggcctgcaacgt 1066
>ISPre2
Length = 1190
Score = 30.2 bits (15), Expect = 1.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 193 tcgtcatcggcgccg 207
|||||||||||||||
Sbjct: 615 tcgtcatcggcgccg 601
>ISBth4
Length = 2024
Score = 30.2 bits (15), Expect = 1.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 212 cacgttttaaataaa 226
|||||||||||||||
Sbjct: 1531 cacgttttaaataaa 1517
>ISBce8
Length = 2470
Score = 30.2 bits (15), Expect = 1.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 212 cacgttttaaataaa 226
|||||||||||||||
Sbjct: 1974 cacgttttaaataaa 1960
>ISBce7
Length = 2039
Score = 30.2 bits (15), Expect = 1.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 212 cacgttttaaataaa 226
|||||||||||||||
Sbjct: 1540 cacgttttaaataaa 1526
>ISBce5
Length = 1653
Score = 30.2 bits (15), Expect = 1.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 212 cacgttttaaataaa 226
|||||||||||||||
Sbjct: 1157 cacgttttaaataaa 1143
>ISPsp1
Length = 1188
Score = 30.2 bits (15), Expect = 1.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 193 tcgtcatcggcgccg 207
|||||||||||||||
Sbjct: 615 tcgtcatcggcgccg 601
>IS4811
Length = 5396
Score = 30.2 bits (15), Expect = 1.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 158 cgacaccgcccgcca 172
|||||||||||||||
Sbjct: 1205 cgacaccgcccgcca 1219
Score = 28.2 bits (14), Expect = 6.1
Identities = 20/22 (90%)
Strand = Plus / Plus
Query: 146 ggccggcctgtccgacaccgcc 167
||||| |||| |||||||||||
Sbjct: 5019 ggccgacctggccgacaccgcc 5040
>IS1384
Length = 1178
Score = 30.2 bits (15), Expect = 1.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 193 tcgtcatcggcgccg 207
|||||||||||||||
Sbjct: 609 tcgtcatcggcgccg 595
>IS1141
Length = 1588
Score = 30.2 bits (15), Expect = 1.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 198 atcggcgccggccgc 212
|||||||||||||||
Sbjct: 663 atcggcgccggccgc 649
>TnAs3
Length = 18735
Score = 28.2 bits (14), Expect = 6.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 5 cccagcctgcgcga 18
||||||||||||||
Sbjct: 14036 cccagcctgcgcga 14049
>TnAs2
Length = 8650
Score = 28.2 bits (14), Expect = 6.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 238 tgtccggcaccgcc 251
||||||||||||||
Sbjct: 7328 tgtccggcaccgcc 7315
>ISBsa1
Length = 1464
Score = 28.2 bits (14), Expect = 6.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 6 ccagcctgcgcgaa 19
||||||||||||||
Sbjct: 1098 ccagcctgcgcgaa 1111
>ISSaci1
Length = 1747
Score = 28.2 bits (14), Expect = 6.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 88 ggaggaagacgaca 101
||||||||||||||
Sbjct: 1512 ggaggaagacgaca 1499
>ISSuac1
Length = 1414
Score = 28.2 bits (14), Expect = 6.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 38 cggctcaccgtgct 51
||||||||||||||
Sbjct: 555 cggctcaccgtgct 542
>ISNph8
Length = 1431
Score = 28.2 bits (14), Expect = 6.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 92 gaagacgacattgt 105
||||||||||||||
Sbjct: 725 gaagacgacattgt 738
>ISRel24
Length = 2837
Score = 28.2 bits (14), Expect = 6.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 130 tcctcgacgacggc 143
||||||||||||||
Sbjct: 2228 tcctcgacgacggc 2241
>ISPmar3
Length = 1282
Score = 28.2 bits (14), Expect = 6.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 168 cgccaacgcctcgc 181
||||||||||||||
Sbjct: 425 cgccaacgcctcgc 412
>ISVsp10
Length = 1614
Score = 28.2 bits (14), Expect = 6.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 203 cgccggccgcacgt 216
||||||||||||||
Sbjct: 685 cgccggccgcacgt 698
>ISVbsp2
Length = 1489
Score = 28.2 bits (14), Expect = 6.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 152 cctgtccgacaccg 165
||||||||||||||
Sbjct: 1057 cctgtccgacaccg 1070
>ISMno33
Length = 1767
Score = 28.2 bits (14), Expect = 6.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 124 tcggcatcctcgac 137
||||||||||||||
Sbjct: 676 tcggcatcctcgac 663
>ISMno23
Length = 2271
Score = 28.2 bits (14), Expect = 6.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 198 atcggcgccggccg 211
||||||||||||||
Sbjct: 1314 atcggcgccggccg 1301
>ISMno9
Length = 1548
Score = 28.2 bits (14), Expect = 6.1
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 184 cggctggcctcgtcatcg 201
|||||||||||| |||||
Sbjct: 804 cggctggcctcgacatcg 787
>ISArsp6
Length = 26712
Score = 28.2 bits (14), Expect = 6.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 19 acgctaccccggcc 32
||||||||||||||
Sbjct: 16617 acgctaccccggcc 16604
>ISMpo3
Length = 1617
Score = 28.2 bits (14), Expect = 6.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 174 cgcctcgccacggc 187
||||||||||||||
Sbjct: 1302 cgcctcgccacggc 1315
>ISBusp4
Length = 1633
Score = 28.2 bits (14), Expect = 6.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 146 ggccggcctgtccg 159
||||||||||||||
Sbjct: 1572 ggccggcctgtccg 1585
>ISStma1
Length = 1023
Score = 28.2 bits (14), Expect = 6.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 6 ccagcctgcgcgaa 19
||||||||||||||
Sbjct: 856 ccagcctgcgcgaa 869
>ISCARN85
Length = 816
Score = 28.2 bits (14), Expect = 6.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 89 gaggaagacgacat 102
||||||||||||||
Sbjct: 761 gaggaagacgacat 748
>ISOt4
Length = 988
Score = 28.2 bits (14), Expect = 6.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 216 ttttaaataaacaa 229
||||||||||||||
Sbjct: 81 ttttaaataaacaa 94
>ISKrh1
Length = 2854
Score = 28.2 bits (14), Expect = 6.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 133 tcgacgacggctgg 146
||||||||||||||
Sbjct: 1187 tcgacgacggctgg 1200
>ISCARN20
Length = 1628
Score = 28.2 bits (14), Expect = 6.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 172 aacgcctcgccacg 185
||||||||||||||
Sbjct: 1477 aacgcctcgccacg 1464
>ISAzca2
Length = 2458
Score = 28.2 bits (14), Expect = 6.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 130 tcctcgacgacggc 143
||||||||||||||
Sbjct: 2159 tcctcgacgacggc 2172
>ISApr6
Length = 2479
Score = 28.2 bits (14), Expect = 6.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 130 tcctcgacgacggc 143
||||||||||||||
Sbjct: 2189 tcctcgacgacggc 2202
>ISAli10
Length = 2584
Score = 28.2 bits (14), Expect = 6.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 140 cggctgggccggcc 153
||||||||||||||
Sbjct: 1492 cggctgggccggcc 1505
>ISAli3
Length = 1167
Score = 28.2 bits (14), Expect = 6.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 157 ccgacaccgcccgc 170
||||||||||||||
Sbjct: 612 ccgacaccgcccgc 625
>ISAau4
Length = 3898
Score = 28.2 bits (14), Expect = 6.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 52 ggcctgcaacgtcg 65
||||||||||||||
Sbjct: 2012 ggcctgcaacgtcg 2025
>ISDge7
Length = 876
Score = 28.2 bits (14), Expect = 6.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 62 gtcgaaggcaaacc 75
||||||||||||||
Sbjct: 9 gtcgaaggcaaacc 22
>ISLxc2
Length = 1113
Score = 28.2 bits (14), Expect = 6.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 133 tcgacgacggctgg 146
||||||||||||||
Sbjct: 172 tcgacgacggctgg 185
>ISHar6
Length = 1359
Score = 28.2 bits (14), Expect = 6.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 245 caccgccagcgtac 258
||||||||||||||
Sbjct: 735 caccgccagcgtac 748
>ISRm21
Length = 1167
Score = 28.2 bits (14), Expect = 6.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 157 ccgacaccgcccgc 170
||||||||||||||
Sbjct: 603 ccgacaccgcccgc 616
>ISEc19
Length = 1229
Score = 28.2 bits (14), Expect = 6.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 36 aacggctcaccgtg 49
||||||||||||||
Sbjct: 671 aacggctcaccgtg 684
>ISYpe1
Length = 1212
Score = 28.2 bits (14), Expect = 6.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 75 ccatcgtgaccctg 88
||||||||||||||
Sbjct: 953 ccatcgtgaccctg 940
>ISYps8
Length = 1212
Score = 28.2 bits (14), Expect = 6.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 75 ccatcgtgaccctg 88
||||||||||||||
Sbjct: 953 ccatcgtgaccctg 940
>ISNmo2
Length = 1529
Score = 28.2 bits (14), Expect = 6.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 165 gcccgccaacgcct 178
||||||||||||||
Sbjct: 436 gcccgccaacgcct 449
>ISXac2
Length = 1195
Score = 28.2 bits (14), Expect = 6.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 240 tccggcaccgccag 253
||||||||||||||
Sbjct: 676 tccggcaccgccag 663
>ISPasp2
Length = 1023
Score = 28.2 bits (14), Expect = 6.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 217 tttaaataaacaaa 230
||||||||||||||
Sbjct: 387 tttaaataaacaaa 374
>ISvNY2A_2
Length = 1443
Score = 28.2 bits (14), Expect = 6.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 63 tcgaaggcaaaccc 76
||||||||||||||
Sbjct: 613 tcgaaggcaaaccc 626
>ISTfu1
Length = 1743
Score = 28.2 bits (14), Expect = 6.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 91 ggaagacgacattg 104
||||||||||||||
Sbjct: 138 ggaagacgacattg 125
>ISAli15
Length = 2658
Score = 28.2 bits (14), Expect = 6.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 29 ggcccgcaacggct 42
||||||||||||||
Sbjct: 1703 ggcccgcaacggct 1716
>ISLxx4
Length = 1110
Score = 28.2 bits (14), Expect = 6.1
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 132 ctcgacgacggctgggcc 149
|||| |||||||||||||
Sbjct: 951 ctcgccgacggctgggcc 968
>ISSp1
Length = 1646
Score = 28.2 bits (14), Expect = 6.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 121 tcatcggcatcctc 134
||||||||||||||
Sbjct: 388 tcatcggcatcctc 375
>ISDeal1
Length = 2525
Score = 28.2 bits (14), Expect = 6.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 200 cggcgccggccgca 213
||||||||||||||
Sbjct: 617 cggcgccggccgca 604
>ISRm9
Length = 2798
Score = 28.2 bits (14), Expect = 6.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 85 cctggaggaagacg 98
||||||||||||||
Sbjct: 1916 cctggaggaagacg 1903
>IS1412
Length = 1656
Score = 28.2 bits (14), Expect = 6.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 121 tcatcggcatcctc 134
||||||||||||||
Sbjct: 391 tcatcggcatcctc 378
>IS117
Length = 2527
Score = 28.2 bits (14), Expect = 6.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 42 tcaccgtgctggcc 55
||||||||||||||
Sbjct: 1351 tcaccgtgctggcc 1338
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_108_length_308_cov_1.58009_ID_5386
(308 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISStma1 | IS481 | Stenotrophomonas maltophilia | 32 | 0.39 | |
| ISStma3 | IS481 | Stenotrophomonas maltophilia | 32 | 0.39 | |
| ISCARN15 | IS66 | Metagenomic data from CARNOULES | 32 | 0.39 | |
| ISSeq1 | ISL3 | Streptococcus equi | 32 | 0.39 | |
| ISChy3 | IS481 | Carboxydothermus hydrogenoformans | 30 | 1.5 | |
| ISPko2 | IS256 | Paracoccus kondratievae | 28 | 6.1 | |
| ISMtu1 | IS256 | Mycobacterium tusciae | 28 | 6.1 | |
| ISBsa1 | IS256 | Blastococcus saxobsidens | 28 | 6.1 | |
| ISGeob2 | IS5 | ISL2 | Geodermatophilus obscurus | 28 | 6.1 |
| ISMgi3 | IS1182 | Mycobacterium gilvum | 28 | 6.1 | |
| ISAs8 | IS1 | Aeromonas salmonicida | 28 | 6.1 | |
| ISHma11 | IS5 | ISH1 | Haloarcula marismortui | 28 | 6.1 |
| ISChy6 | IS481 | Carboxydothermus hydrogenoformans | 28 | 6.1 | |
| ISPa32 | IS3 | IS407 | Pseudomonas aeruginosa | 28 | 6.1 |
| ISDde3 | IS3 | IS3 | Desulfovibrio desulfuricans | 28 | 6.1 |
| ISAba7 | IS5 | IS903 | Acinetobacter baumannii | 28 | 6.1 |
| ISLxx5 | IS30 | Leifsonia xyli | 28 | 6.1 | |
| ISGsu7 | IS3 | Geobacter sulfurreducens | 28 | 6.1 | |
| ISPps1 | IS91 | - | Pseudomonas huttiensis | 28 | 6.1 |
| IS1415 | IS21 | - | Rhodococcus erythropolis | 28 | 6.1 |
>ISStma1
Length = 1023
Score = 32.2 bits (16), Expect = 0.39
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 145 acctgaccatctccaa 160
||||||||||||||||
Sbjct: 349 acctgaccatctccaa 364
>ISStma3
Length = 1023
Score = 32.2 bits (16), Expect = 0.39
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 145 acctgaccatctccaa 160
||||||||||||||||
Sbjct: 349 acctgaccatctccaa 364
>ISCARN15
Length = 2427
Score = 32.2 bits (16), Expect = 0.39
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 227 gccggggcgtttttcg 242
||||||||||||||||
Sbjct: 1122 gccggggcgtttttcg 1137
>ISSeq1
Length = 1415
Score = 32.2 bits (16), Expect = 0.39
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 57 atcaccatggatatgt 72
||||||||||||||||
Sbjct: 746 atcaccatggatatgt 761
>ISChy3
Length = 3098
Score = 30.2 bits (15), Expect = 1.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 144 aacctgaccatctcc 158
|||||||||||||||
Sbjct: 845 aacctgaccatctcc 831
>ISPko2
Length = 1396
Score = 28.2 bits (14), Expect = 6.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 77 cggtgccatcgaga 90
||||||||||||||
Sbjct: 635 cggtgccatcgaga 622
>ISMtu1
Length = 1474
Score = 28.2 bits (14), Expect = 6.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 222 gcatcgccggggcg 235
||||||||||||||
Sbjct: 209 gcatcgccggggcg 222
>ISBsa1
Length = 1464
Score = 28.2 bits (14), Expect = 6.1
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 122 catcggctccatcgccat 139
|||| |||||||||||||
Sbjct: 499 catccgctccatcgccat 482
>ISGeob2
Length = 968
Score = 28.2 bits (14), Expect = 6.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 74 catcggtgccatcg 87
||||||||||||||
Sbjct: 899 catcggtgccatcg 912
>ISMgi3
Length = 1770
Score = 28.2 bits (14), Expect = 6.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 73 ccatcggtgccatc 86
||||||||||||||
Sbjct: 842 ccatcggtgccatc 829
>ISAs8
Length = 754
Score = 28.2 bits (14), Expect = 6.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 268 gcgagcagtatcac 281
||||||||||||||
Sbjct: 265 gcgagcagtatcac 252
>ISHma11
Length = 929
Score = 28.2 bits (14), Expect = 6.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 197 gaaggctttgtctg 210
||||||||||||||
Sbjct: 633 gaaggctttgtctg 620
>ISChy6
Length = 3020
Score = 28.2 bits (14), Expect = 6.1
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 230 ggggcgtttttcgtttta 247
|||||||||||| |||||
Sbjct: 522 ggggcgtttttcctttta 539
>ISPa32
Length = 1236
Score = 28.2 bits (14), Expect = 6.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 37 agcagaagacggca 50
||||||||||||||
Sbjct: 55 agcagaagacggca 68
>ISDde3
Length = 1278
Score = 28.2 bits (14), Expect = 6.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 250 gcctgaaaaggcca 263
||||||||||||||
Sbjct: 241 gcctgaaaaggcca 228
>ISAba7
Length = 1039
Score = 28.2 bits (14), Expect = 6.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 141 gataacctgaccat 154
||||||||||||||
Sbjct: 823 gataacctgaccat 810
>ISLxx5
Length = 1495
Score = 28.2 bits (14), Expect = 6.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 220 ccgcatcgccgggg 233
||||||||||||||
Sbjct: 795 ccgcatcgccgggg 782
>ISGsu7
Length = 1351
Score = 28.2 bits (14), Expect = 6.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 54 gagatcaccatgga 67
||||||||||||||
Sbjct: 348 gagatcaccatgga 361
>ISPps1
Length = 1863
Score = 28.2 bits (14), Expect = 6.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 74 catcggtgccatcg 87
||||||||||||||
Sbjct: 643 catcggtgccatcg 656
>IS1415
Length = 2580
Score = 28.2 bits (14), Expect = 6.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 268 gcgagcagtatcac 281
||||||||||||||
Sbjct: 888 gcgagcagtatcac 901
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_109_length_306_cov_0.951965_ID_5388
(306 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISAzs17 | Tn3 | Azospirillum sp. | 32 | 0.39 | |
| ISRer1 | IS1380 | Rhodococcus erythropolis | 32 | 0.39 | |
| ISBcen18 | IS256 | Burkholderia cenocepacia | 32 | 0.39 | |
| IS16 | IS256 | - | Enterococcus faecalis | 32 | 0.39 |
| IS1165 | ISL3 | - | Leuconostoc mesenteroides | 32 | 0.39 |
| ISMav4 | IS481 | Mycobacterium avium | 30 | 1.5 | |
| ISMlo2 | IS110 | IS1111 | Mesorhizobium loti | 30 | 1.5 |
| ISPsp3 | IS5 | IS5 | Pseudomonas sp. | 30 | 1.5 |
| ISAeme5 | IS66 | Aeromonas media | 28 | 6.0 | |
| ISAs28 | IS21 | Aeromonas salmonicida | 28 | 6.0 | |
| ISAs27 | IS21 | Aeromonas salmonicida | 28 | 6.0 | |
| ISPsp7 | IS30 | Pseudomonas sp. | 28 | 6.0 | |
| ISKol3 | IS21 | Kosmotoga olearia | 28 | 6.0 | |
| ISAnsp12 | IS66 | Anaeromyxobacter sp. | 28 | 6.0 | |
| ISMdi6 | IS1182 | Methylobacterium dichloromethanicum | 28 | 6.0 | |
| ISCARN115 | IS4 | IS4 | Metagenomic data from CARNOULES | 28 | 6.0 |
| ISThsp9 | Tn3 | Thiomonas sp. | 28 | 6.0 | |
| ISNisp5 | IS1 | ISMhu11 | Nitrobacter sp. | 28 | 6.0 |
| ISUnCu4 | IS30 | Plasmid QKH54 | 28 | 6.0 | |
| ISPsp4 | IS30 | Pseudomonas sp. | 28 | 6.0 | |
| ISCte2 | IS3 | IS3 | Comamonas testosteroni | 28 | 6.0 |
| ISAzvi5 | IS4 | IS10 | Azotobacter vinelandii | 28 | 6.0 |
| ISAzo4 | IS21 | Azoarcus sp. | 28 | 6.0 | |
| ISEc10 | IS21 | Escherichia coli | 28 | 6.0 | |
| ISPst1 | IS30 | - | Pseudomonas stutzeri | 28 | 6.0 |
| IS4 | IS4 | IS4 | Escherichia coli | 28 | 6.0 |
>ISAzs17
Length = 7252
Score = 32.2 bits (16), Expect = 0.39
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 28 ccagcagcaggccgac 43
||||||||||||||||
Sbjct: 2141 ccagcagcaggccgac 2156
>ISRer1
Length = 1687
Score = 32.2 bits (16), Expect = 0.39
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 43 cggccagccgcagccg 58
||||||||||||||||
Sbjct: 1445 cggccagccgcagccg 1430
>ISBcen18
Length = 1372
Score = 32.2 bits (16), Expect = 0.39
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 35 caggccgacggccagc 50
||||||||||||||||
Sbjct: 683 caggccgacggccagc 698
>IS16
Length = 1466
Score = 32.2 bits (16), Expect = 0.39
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 247 cattttagaaaacggc 262
||||||||||||||||
Sbjct: 1047 cattttagaaaacggc 1062
>IS1165
Length = 1553
Score = 32.2 bits (16), Expect = 0.39
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 64 tacggttgatgccctc 79
||||||||||||||||
Sbjct: 1294 tacggttgatgccctc 1279
>ISMav4
Length = 1089
Score = 30.2 bits (15), Expect = 1.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 44 ggccagccgcagccg 58
|||||||||||||||
Sbjct: 155 ggccagccgcagccg 141
>ISMlo2
Length = 1402
Score = 30.2 bits (15), Expect = 1.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 262 cagcttcacctcgtg 276
|||||||||||||||
Sbjct: 301 cagcttcacctcgtg 287
>ISPsp3
Length = 1190
Score = 30.2 bits (15), Expect = 1.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 218 atgaaacagcgcggc 232
|||||||||||||||
Sbjct: 1135 atgaaacagcgcggc 1121
>ISAeme5
Length = 2438
Score = 28.2 bits (14), Expect = 6.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 1 actgcaggccgatg 14
||||||||||||||
Sbjct: 1731 actgcaggccgatg 1744
>ISAs28
Length = 2626
Score = 28.2 bits (14), Expect = 6.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 27 accagcagcaggcc 40
||||||||||||||
Sbjct: 1855 accagcagcaggcc 1868
>ISAs27
Length = 2628
Score = 28.2 bits (14), Expect = 6.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 27 accagcagcaggcc 40
||||||||||||||
Sbjct: 1857 accagcagcaggcc 1870
>ISPsp7
Length = 1113
Score = 28.2 bits (14), Expect = 6.0
Identities = 20/22 (90%)
Strand = Plus / Minus
Query: 17 gttcagcttcaccagcagcagg 38
||||| ||||||||||| ||||
Sbjct: 691 gttcatcttcaccagcatcagg 670
>ISKol3
Length = 2374
Score = 28.2 bits (14), Expect = 6.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 81 gcaacgttcactat 94
||||||||||||||
Sbjct: 1452 gcaacgttcactat 1439
>ISAnsp12
Length = 2926
Score = 28.2 bits (14), Expect = 6.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 159 acgtctggcagggc 172
||||||||||||||
Sbjct: 19 acgtctggcagggc 32
>ISMdi6
Length = 1466
Score = 28.2 bits (14), Expect = 6.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 102 atcaggtgatcctc 115
||||||||||||||
Sbjct: 931 atcaggtgatcctc 944
>ISCARN115
Length = 1502
Score = 28.2 bits (14), Expect = 6.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 99 acaatcaggtgatc 112
||||||||||||||
Sbjct: 901 acaatcaggtgatc 888
>ISThsp9
Length = 6215
Score = 28.2 bits (14), Expect = 6.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 10 cgatgaagttcagc 23
||||||||||||||
Sbjct: 4444 cgatgaagttcagc 4431
>ISNisp5
Length = 3580
Score = 28.2 bits (14), Expect = 6.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 20 cagcttcaccagca 33
||||||||||||||
Sbjct: 2312 cagcttcaccagca 2299
>ISUnCu4
Length = 1113
Score = 28.2 bits (14), Expect = 6.0
Identities = 20/22 (90%)
Strand = Plus / Minus
Query: 17 gttcagcttcaccagcagcagg 38
||||| ||||||||||| ||||
Sbjct: 691 gttcatcttcaccagcatcagg 670
>ISPsp4
Length = 1084
Score = 28.2 bits (14), Expect = 6.0
Identities = 20/22 (90%)
Strand = Plus / Minus
Query: 17 gttcagcttcaccagcagcagg 38
||||| ||||||||||| ||||
Sbjct: 676 gttcatcttcaccagcatcagg 655
>ISCte2
Length = 1301
Score = 28.2 bits (14), Expect = 6.0
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 215 ctgatgaaacagcgcggc 232
||||||||||||| ||||
Sbjct: 639 ctgatgaaacagcacggc 656
>ISAzvi5
Length = 1328
Score = 28.2 bits (14), Expect = 6.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 277 tctgcccggctctg 290
||||||||||||||
Sbjct: 254 tctgcccggctctg 267
>ISAzo4
Length = 2757
Score = 28.2 bits (14), Expect = 6.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 136 gaatctgaacacca 149
||||||||||||||
Sbjct: 2678 gaatctgaacacca 2691
>ISEc10
Length = 2410
Score = 28.2 bits (14), Expect = 6.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 282 ccggctctgacacc 295
||||||||||||||
Sbjct: 313 ccggctctgacacc 326
>ISPst1
Length = 1113
Score = 28.2 bits (14), Expect = 6.0
Identities = 20/22 (90%)
Strand = Plus / Minus
Query: 17 gttcagcttcaccagcagcagg 38
||||| ||||||||||| ||||
Sbjct: 691 gttcatcttcaccagcatcagg 670
>IS4
Length = 1426
Score = 28.2 bits (14), Expect = 6.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 18 ttcagcttcaccag 31
||||||||||||||
Sbjct: 851 ttcagcttcaccag 838
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_110_length_306_cov_0.829694_ID_5390
(306 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISUnCu17 | IS1182 | Uncultured bacteria | 36 | 0.025 | |
| ISHko4 | IS200/IS605 | IS1341 | Halorubrum kocurii | 32 | 0.39 |
| TnAs3 | Tn3 | Aeromonas salmonicida | 30 | 1.5 | |
| ISSlgl1 | IS256 | IS1249 | Slackia heliotrinireducens | 30 | 1.5 |
| ISWch1 | IS256 | Waddlia chondrophila | 30 | 1.5 | |
| ISDba1 | IS3 | IS407 | Desulfomicrobium baculatum | 30 | 1.5 |
| ISRer1 | IS1380 | Rhodococcus erythropolis | 30 | 1.5 | |
| ISHals1 | IS200/IS605 | IS1341 | Haloferax sp. | 28 | 6.0 |
| ISHam2 | IS200/IS605 | IS1341 | Haloarcula amylolytica | 28 | 6.0 |
| ISHlsp1 | IS200/IS605 | IS605 | Halopiger sp. | 28 | 6.0 |
| ISHma16 | IS200/IS605 | IS1341 | Haloarcula marismortui | 28 | 6.0 |
| ISTni1 | ISKra4 | ISKra4 | Thioalkalivibrio nitratireducens | 28 | 6.0 |
| ISSysp6 | ISKra4 | ISAzba1 | Synechococcus sp. | 28 | 6.0 |
| ISAzs17 | Tn3 | Azospirillum sp. | 28 | 6.0 | |
| ISAmi1 | IS5 | ISL2 | Actinosynnema mirum | 28 | 6.0 |
| ISMlo5 | ISNCY | ISDol1 | Mesorhizobium loti | 28 | 6.0 |
| ISRsp17 | ISNCY | ISDol1 | Rhizobium sp. | 28 | 6.0 |
| ISBaps1 | IS66 | Bacillus pseudomycoides | 28 | 6.0 | |
| ISMaq3 | IS1380 | Marinobacter aquaeolei | 28 | 6.0 | |
| ISDka1 | IS607 | Desulfurococcus kamchatkensis | 28 | 6.0 | |
| ISApr7 | IS1595 | ISNwi1 | Alpha proteobacterium | 28 | 6.0 |
| ISMno4 | IS66 | ISBst12 | Methylobacterium nodulans | 28 | 6.0 |
| ISApr5 | IS6 | Alpha proteobacterium | 28 | 6.0 | |
| ISBad1 | IS21 | Bifidobacterium adolescentis | 28 | 6.0 | |
| ISRme9 | IS21 | Ralstonia metallidurans | 28 | 6.0 | |
| ISMca4 | IS3 | IS407 | Methylococcus capsulatus | 28 | 6.0 |
| ISXac1 | IS4 | IS10 | Xanthomonas axonopodis | 28 | 6.0 |
| ISBce12 | IS4 | IS231 | Bacillus cereus | 28 | 6.0 |
| ISAzo25 | IS1182 | Azoarcus sp. | 28 | 6.0 | |
| ISBcen1 | IS110 | IS1111 | Burkholderia cenocepacia | 28 | 6.0 |
| ISXc4 | Tn3 | - | Xanthomonas campestris | 28 | 6.0 |
| ISXaca1 | IS4 | IS10 | Xanthomonas campestris | 28 | 6.0 |
| ISRtr1 | IS256 | - | Rhizobium tropici | 28 | 6.0 |
| ISRsp1 | IS66 | - | Rhizobium sp. | 28 | 6.0 |
| IS426 | IS3 | IS2 | Agrobacterium tumefaciens | 28 | 6.0 |
| IS3000 | Tn3 | - | Escherichia coli | 28 | 6.0 |
| IS1676 | IS1380 | - | Rhodococcus erythropolis | 28 | 6.0 |
| IS1470 | IS30 | - | Clostridium perfringens | 28 | 6.0 |
>ISUnCu17
Length = 1481
Score = 36.2 bits (18), Expect = 0.025
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 56 gcgctgcgcgctgatcag 73
||||||||||||||||||
Sbjct: 986 gcgctgcgcgctgatcag 969
>ISHko4
Length = 1517
Score = 32.2 bits (16), Expect = 0.39
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 79 ctcgtccggtgccttc 94
||||||||||||||||
Sbjct: 588 ctcgtccggtgccttc 573
>TnAs3
Length = 18735
Score = 30.2 bits (15), Expect = 1.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 102 tgccgctgtttgccg 116
|||||||||||||||
Sbjct: 1375 tgccgctgtttgccg 1389
>ISSlgl1
Length = 1341
Score = 30.2 bits (15), Expect = 1.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 62 cgcgctgatcaggcg 76
|||||||||||||||
Sbjct: 938 cgcgctgatcaggcg 952
>ISWch1
Length = 1399
Score = 30.2 bits (15), Expect = 1.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 222 caaagcctgtgcttg 236
|||||||||||||||
Sbjct: 1031 caaagcctgtgcttg 1045
>ISDba1
Length = 1207
Score = 30.2 bits (15), Expect = 1.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 64 cgctgatcaggcggg 78
|||||||||||||||
Sbjct: 840 cgctgatcaggcggg 826
>ISRer1
Length = 1687
Score = 30.2 bits (15), Expect = 1.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 64 cgctgatcaggcggg 78
|||||||||||||||
Sbjct: 431 cgctgatcaggcggg 417
>ISHals1
Length = 1520
Score = 28.2 bits (14), Expect = 6.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 148 ggttgccgtgccga 161
||||||||||||||
Sbjct: 1100 ggttgccgtgccga 1087
>ISHam2
Length = 1580
Score = 28.2 bits (14), Expect = 6.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 148 ggttgccgtgccga 161
||||||||||||||
Sbjct: 1151 ggttgccgtgccga 1138
>ISHlsp1
Length = 1853
Score = 28.2 bits (14), Expect = 6.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 15 tcaccgagtttctg 28
||||||||||||||
Sbjct: 1280 tcaccgagtttctg 1267
>ISHma16
Length = 1526
Score = 28.2 bits (14), Expect = 6.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 148 ggttgccgtgccga 161
||||||||||||||
Sbjct: 1104 ggttgccgtgccga 1091
>ISTni1
Length = 2377
Score = 28.2 bits (14), Expect = 6.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 55 tgcgctgcgcgctg 68
||||||||||||||
Sbjct: 2282 tgcgctgcgcgctg 2295
>ISSysp6
Length = 2172
Score = 28.2 bits (14), Expect = 6.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 121 cttgctgatcacct 134
||||||||||||||
Sbjct: 1981 cttgctgatcacct 1968
>ISAzs17
Length = 7252
Score = 28.2 bits (14), Expect = 6.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 95 ggtgccgtgccgct 108
||||||||||||||
Sbjct: 1274 ggtgccgtgccgct 1287
>ISAmi1
Length = 883
Score = 28.2 bits (14), Expect = 6.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 11 ccgatcaccgagtt 24
||||||||||||||
Sbjct: 27 ccgatcaccgagtt 14
>ISMlo5
Length = 1664
Score = 28.2 bits (14), Expect = 6.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 55 tgcgctgcgcgctg 68
||||||||||||||
Sbjct: 328 tgcgctgcgcgctg 341
>ISRsp17
Length = 1664
Score = 28.2 bits (14), Expect = 6.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 55 tgcgctgcgcgctg 68
||||||||||||||
Sbjct: 330 tgcgctgcgcgctg 343
>ISBaps1
Length = 2424
Score = 28.2 bits (14), Expect = 6.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 238 tgtttttgttgaaa 251
||||||||||||||
Sbjct: 721 tgtttttgttgaaa 708
>ISMaq3
Length = 1560
Score = 28.2 bits (14), Expect = 6.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 112 tgccggcaccttgc 125
||||||||||||||
Sbjct: 1257 tgccggcaccttgc 1270
>ISDka1
Length = 1999
Score = 28.2 bits (14), Expect = 6.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 178 tctctatctggctg 191
||||||||||||||
Sbjct: 1004 tctctatctggctg 1017
>ISApr7
Length = 3923
Score = 28.2 bits (14), Expect = 6.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 152 gccgtgccgatcgg 165
||||||||||||||
Sbjct: 2200 gccgtgccgatcgg 2187
>ISMno4
Length = 1385
Score = 28.2 bits (14), Expect = 6.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 83 tccggtgccttcgg 96
||||||||||||||
Sbjct: 457 tccggtgccttcgg 470
>ISApr5
Length = 806
Score = 28.2 bits (14), Expect = 6.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 154 cgtgccgatcggcc 167
||||||||||||||
Sbjct: 518 cgtgccgatcggcc 505
>ISBad1
Length = 2525
Score = 28.2 bits (14), Expect = 6.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 101 gtgccgctgtttgc 114
||||||||||||||
Sbjct: 425 gtgccgctgtttgc 412
>ISRme9
Length = 2688
Score = 28.2 bits (14), Expect = 6.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 124 gctgatcaccttca 137
||||||||||||||
Sbjct: 2663 gctgatcaccttca 2676
>ISMca4
Length = 1197
Score = 28.2 bits (14), Expect = 6.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 59 ctgcgcgctgatca 72
||||||||||||||
Sbjct: 725 ctgcgcgctgatca 712
>ISXac1
Length = 1350
Score = 28.2 bits (14), Expect = 6.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 152 gccgtgccgatcgg 165
||||||||||||||
Sbjct: 450 gccgtgccgatcgg 463
>ISBce12
Length = 1573
Score = 28.2 bits (14), Expect = 6.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 238 tgtttttgttgaaa 251
||||||||||||||
Sbjct: 48 tgtttttgttgaaa 35
>ISAzo25
Length = 1388
Score = 28.2 bits (14), Expect = 6.0
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 56 gcgctgcgcgctgatcag 73
|||||| |||||||||||
Sbjct: 1027 gcgctgagcgctgatcag 1010
>ISBcen1
Length = 1357
Score = 28.2 bits (14), Expect = 6.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 150 ttgccgtgccgatc 163
||||||||||||||
Sbjct: 148 ttgccgtgccgatc 135
>ISXc4
Length = 6938
Score = 28.2 bits (14), Expect = 6.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 152 gccgtgccgatcgg 165
||||||||||||||
Sbjct: 5425 gccgtgccgatcgg 5438
>ISXaca1
Length = 1350
Score = 28.2 bits (14), Expect = 6.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 152 gccgtgccgatcgg 165
||||||||||||||
Sbjct: 450 gccgtgccgatcgg 463
>ISRtr1
Length = 1364
Score = 28.2 bits (14), Expect = 6.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 65 gctgatcaggcggg 78
||||||||||||||
Sbjct: 737 gctgatcaggcggg 750
>ISRsp1
Length = 3481
Score = 28.2 bits (14), Expect = 6.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 142 catgacggttgccg 155
||||||||||||||
Sbjct: 2565 catgacggttgccg 2552
>IS426
Length = 1319
Score = 28.2 bits (14), Expect = 6.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 224 aagcctgtgcttga 237
||||||||||||||
Sbjct: 61 aagcctgtgcttga 48
>IS3000
Length = 3235
Score = 28.2 bits (14), Expect = 6.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 24 ttctgtttggtctg 37
||||||||||||||
Sbjct: 1071 ttctgtttggtctg 1058
>IS1676
Length = 1693
Score = 28.2 bits (14), Expect = 6.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 65 gctgatcaggcggg 78
||||||||||||||
Sbjct: 431 gctgatcaggcggg 418
>IS1470
Length = 1212
Score = 28.2 bits (14), Expect = 6.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 239 gtttttgttgaaat 252
||||||||||||||
Sbjct: 510 gtttttgttgaaat 497
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_111_length_303_cov_0.747788_ID_5392
(303 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISBmu3 | IS21 | Burkholderia multivorans | 34 | 0.097 | |
| IS1162 | IS21 | - | Pseudomonas fluorescens | 34 | 0.097 |
| ISRhosp1 | IS3 | IS3 | Rhodococcus sp. | 32 | 0.38 |
| ISShdy2 | IS66 | Shigella dysenteriae | 30 | 1.5 | |
| ISMno33 | IS1182 | Methylobacterium nodulans | 30 | 1.5 | |
| ISCARN6 | IS200/IS605 | Metagenomic data from CARNOULES | 30 | 1.5 | |
| ISAli20 | Tn3 | Azospirillum lipoferum | 30 | 1.5 | |
| ISGdi14 | IS3 | IS51 | Gluconacetobacter diazotrophicus | 30 | 1.5 |
| ISGdi17 | IS21 | Gluconacetobacter diazotrophicus | 30 | 1.5 | |
| ISAeh1 | IS66 | Alkalilimnicola ehrlichei | 30 | 1.5 | |
| ISSpo9 | IS5 | IS903 | Silicibacter pomeroyi | 30 | 1.5 |
| ISPlsp1 | IS3 | IS150 | Polynucleobacter sp. | 30 | 1.5 |
| ISRm16 | IS4 | IS4Sa | Sinorhizobium meliloti | 30 | 1.5 |
| ISRsp1 | IS66 | - | Rhizobium sp. | 30 | 1.5 |
| ISHas1 | IS200/IS605 | IS605 | Halonotius sp. | 28 | 6.0 |
| ISHti1 | IS200/IS605 | IS605 | Halorhabdus tiamatea | 28 | 6.0 |
| ISAs25 | IS1634 | Aeromonas salmonicida | 28 | 6.0 | |
| ISHbo4 | IS200/IS605 | IS605 | Halogeometricum borinquense | 28 | 6.0 |
| ISH36 | IS200/IS605 | Halobacterium salinarum | 28 | 6.0 | |
| ISNamo2 | IS5 | ISH1 | Natronomonas moolapensis | 28 | 6.0 |
| ISGeob5 | IS5 | IS427 | Geodermatophilus obscurus | 28 | 6.0 |
| ISFsp7 | IS5 | ISL2 | Frankia sp. | 28 | 6.0 |
| ISMpo10 | Tn3 | Methylobacterium populi | 28 | 6.0 | |
| ISFsp14 | IS1380 | Frankia sp. | 28 | 6.0 | |
| ISBma2 | IS1182 | Burkholderia mallei | 28 | 6.0 | |
| ISRce1 | ISAs1 | Rhodospirillum centenum | 28 | 6.0 | |
| ISCARN80 | IS110 | IS1111 | Metagenomic data from CARNOULES | 28 | 6.0 |
| ISThsp4 | IS3 | IS3 | Thiomonas sp. | 28 | 6.0 |
| ISMsm3 | IS1380 | Mycobacterium smegmatis | 28 | 6.0 | |
| ISHma7 | IS200/IS605 | Haloarcula marismortui | 28 | 6.0 | |
| ISAzvi2 | IS110 | IS1111 | Azotobacter vinelandii | 28 | 6.0 |
| ISBcen3 | IS110 | IS1111 | Burkholderia cenocepacia | 28 | 6.0 |
| ISPa11 | IS110 | IS1111 | Pseudomonas aeruginosa | 28 | 6.0 |
| ISPsy9 | IS3 | IS150 | Pseudomonas syringae | 28 | 6.0 |
| IS4811 | IS5 | IS1031 | Streptomyces lividans | 28 | 6.0 |
| IS1420 | IS5 | IS903 | Ralstonia solanacearum | 28 | 6.0 |
| IS1132 | IS256 | - | Corynebacterium diphtheriae | 28 | 6.0 |
| IS1001 | ISL3 | - | Bordetella parapertussis | 28 | 6.0 |
>ISBmu3
Length = 2697
Score = 34.2 bits (17), Expect = 0.097
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 112 atggacggcctgctgctcgac 132
||||||| |||||||||||||
Sbjct: 2333 atggacgtcctgctgctcgac 2353
>IS1162
Length = 2634
Score = 34.2 bits (17), Expect = 0.097
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 117 cggcctgctgctcgacagcga 137
|||||||||||||||| ||||
Sbjct: 1912 cggcctgctgctcgaccgcga 1932
>ISRhosp1
Length = 1321
Score = 32.2 bits (16), Expect = 0.38
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 288 ccatcgcgccgagttc 303
||||||||||||||||
Sbjct: 422 ccatcgcgccgagttc 437
>ISShdy2
Length = 2496
Score = 30.2 bits (15), Expect = 1.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 10 cgggcactgcccgcc 24
|||||||||||||||
Sbjct: 1723 cgggcactgcccgcc 1709
>ISMno33
Length = 1767
Score = 30.2 bits (15), Expect = 1.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 108 cgacatggacggcct 122
|||||||||||||||
Sbjct: 77 cgacatggacggcct 63
>ISCARN6
Length = 1856
Score = 30.2 bits (15), Expect = 1.5
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 208 atgcacatgatcggcctca 226
|||||||||||| ||||||
Sbjct: 303 atgcacatgatccgcctca 321
>ISAli20
Length = 3828
Score = 30.2 bits (15), Expect = 1.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 113 tggacggcctgctgc 127
|||||||||||||||
Sbjct: 2996 tggacggcctgctgc 3010
>ISGdi14
Length = 1318
Score = 30.2 bits (15), Expect = 1.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 281 tcgacgcccatcgcg 295
|||||||||||||||
Sbjct: 387 tcgacgcccatcgcg 401
>ISGdi17
Length = 2482
Score = 30.2 bits (15), Expect = 1.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 20 ccgcccctcggccgc 34
|||||||||||||||
Sbjct: 1189 ccgcccctcggccgc 1175
>ISAeh1
Length = 2320
Score = 30.2 bits (15), Expect = 1.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 121 ctgctgctcgacagc 135
|||||||||||||||
Sbjct: 847 ctgctgctcgacagc 861
>ISSpo9
Length = 1049
Score = 30.2 bits (15), Expect = 1.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 254 aaggcgccgtcggcg 268
|||||||||||||||
Sbjct: 655 aaggcgccgtcggcg 641
>ISPlsp1
Length = 1446
Score = 30.2 bits (15), Expect = 1.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 215 tgatcggcctcaact 229
|||||||||||||||
Sbjct: 1040 tgatcggcctcaact 1054
>ISRm16
Length = 1299
Score = 30.2 bits (15), Expect = 1.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 161 gccaggtcagcctcg 175
|||||||||||||||
Sbjct: 828 gccaggtcagcctcg 842
>ISRsp1
Length = 3481
Score = 30.2 bits (15), Expect = 1.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 11 gggcactgcccgccc 25
|||||||||||||||
Sbjct: 2952 gggcactgcccgccc 2966
>ISHas1
Length = 1955
Score = 28.2 bits (14), Expect = 6.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 288 ccatcgcgccgagt 301
||||||||||||||
Sbjct: 875 ccatcgcgccgagt 862
>ISHti1
Length = 2131
Score = 28.2 bits (14), Expect = 6.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 288 ccatcgcgccgagt 301
||||||||||||||
Sbjct: 940 ccatcgcgccgagt 927
>ISAs25
Length = 1722
Score = 28.2 bits (14), Expect = 6.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 153 cattggtcgccagg 166
||||||||||||||
Sbjct: 1293 cattggtcgccagg 1280
>ISHbo4
Length = 1835
Score = 28.2 bits (14), Expect = 6.0
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 86 ccgacctccgcgccgtcg 103
|||||| |||||||||||
Sbjct: 1201 ccgaccgccgcgccgtcg 1184
>ISH36
Length = 1978
Score = 28.2 bits (14), Expect = 6.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 288 ccatcgcgccgagt 301
||||||||||||||
Sbjct: 898 ccatcgcgccgagt 885
>ISNamo2
Length = 937
Score = 28.2 bits (14), Expect = 6.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 195 gcacgaagtggcca 208
||||||||||||||
Sbjct: 550 gcacgaagtggcca 563
>ISGeob5
Length = 903
Score = 28.2 bits (14), Expect = 6.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 78 caacccgaccgacc 91
||||||||||||||
Sbjct: 444 caacccgaccgacc 457
>ISFsp7
Length = 1041
Score = 28.2 bits (14), Expect = 6.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 245 ccctgctcaaaggc 258
||||||||||||||
Sbjct: 859 ccctgctcaaaggc 872
>ISMpo10
Length = 4911
Score = 28.2 bits (14), Expect = 6.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 122 tgctgctcgacagc 135
||||||||||||||
Sbjct: 3359 tgctgctcgacagc 3346
>ISFsp14
Length = 1696
Score = 28.2 bits (14), Expect = 6.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 13 gcactgcccgcccc 26
||||||||||||||
Sbjct: 1487 gcactgcccgcccc 1500
>ISBma2
Length = 1573
Score = 28.2 bits (14), Expect = 6.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 270 cgactacccgctcg 283
||||||||||||||
Sbjct: 1485 cgactacccgctcg 1498
>ISRce1
Length = 1267
Score = 28.2 bits (14), Expect = 6.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 258 cgccgtcggcgacg 271
||||||||||||||
Sbjct: 757 cgccgtcggcgacg 770
>ISCARN80
Length = 1409
Score = 28.2 bits (14), Expect = 6.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 119 gcctgctgctcgac 132
||||||||||||||
Sbjct: 439 gcctgctgctcgac 426
>ISThsp4
Length = 1289
Score = 28.2 bits (14), Expect = 6.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 286 gcccatcgcgccga 299
||||||||||||||
Sbjct: 689 gcccatcgcgccga 702
>ISMsm3
Length = 1695
Score = 28.2 bits (14), Expect = 6.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 257 gcgccgtcggcgac 270
||||||||||||||
Sbjct: 335 gcgccgtcggcgac 322
>ISHma7
Length = 2008
Score = 28.2 bits (14), Expect = 6.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 288 ccatcgcgccgagt 301
||||||||||||||
Sbjct: 928 ccatcgcgccgagt 915
>ISAzvi2
Length = 1396
Score = 28.2 bits (14), Expect = 6.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 117 cggcctgctgctcg 130
||||||||||||||
Sbjct: 437 cggcctgctgctcg 424
>ISBcen3
Length = 1413
Score = 28.2 bits (14), Expect = 6.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 114 ggacggcctgctgc 127
||||||||||||||
Sbjct: 442 ggacggcctgctgc 429
>ISPa11
Length = 1372
Score = 28.2 bits (14), Expect = 6.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 116 acggcctgctgctc 129
||||||||||||||
Sbjct: 433 acggcctgctgctc 420
>ISPsy9
Length = 1452
Score = 28.2 bits (14), Expect = 6.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 113 tggacggcctgctg 126
||||||||||||||
Sbjct: 607 tggacggcctgctg 620
>IS4811
Length = 5396
Score = 28.2 bits (14), Expect = 6.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 107 tcgacatggacggc 120
||||||||||||||
Sbjct: 1498 tcgacatggacggc 1511
Score = 28.2 bits (14), Expect = 6.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 121 ctgctgctcgacag 134
||||||||||||||
Sbjct: 4732 ctgctgctcgacag 4745
>IS1420
Length = 1131
Score = 28.2 bits (14), Expect = 6.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 122 tgctgctcgacagc 135
||||||||||||||
Sbjct: 494 tgctgctcgacagc 507
>IS1132
Length = 1441
Score = 28.2 bits (14), Expect = 6.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 107 tcgacatggacggc 120
||||||||||||||
Sbjct: 703 tcgacatggacggc 716
>IS1001
Length = 1306
Score = 28.2 bits (14), Expect = 6.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 114 ggacggcctgctgc 127
||||||||||||||
Sbjct: 953 ggacggcctgctgc 940
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_112_length_301_cov_0.977679_ID_5394
(301 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISMex31 | IS110 | IS1111 | Methylobacterium extorquens | 36 | 0.024 |
| ISKpn25 | ISL3 | Klebsiella pneumoniae | 34 | 0.096 | |
| ISEc37 | IS91 | Escherichia coli | 30 | 1.5 | |
| ISAzs4 | IS110 | IS1111 | Azospirillum sp. | 30 | 1.5 |
| ISCps1 | IS110 | IS1111 | Colwellia psychroerythraea | 30 | 1.5 |
| ISMlo3 | IS110 | IS1111 | Mesorhizobium loti | 30 | 1.5 |
| TnXo19 | Tn3 | Xanthomonas oryzae | 28 | 5.9 | |
| ISShdy2 | IS66 | Shigella dysenteriae | 28 | 5.9 | |
| ISRel7 | IS110 | IS1111 | Rhizobium etli | 28 | 5.9 |
| ISNph26 | IS200/IS605 | IS1341 | Natronomonas pharaonis | 28 | 5.9 |
| ISNma16 | IS200/IS605 | IS1341 | Natrialba magadii | 28 | 5.9 |
| ISMyma10 | IS3 | IS51 | Mycobacterium marinum | 28 | 5.9 |
| ISKpn28 | IS481 | Klebsiella pneumoniae | 28 | 5.9 | |
| ISHbo2 | IS200/IS605 | IS1341 | Halogeometricum borinquense | 28 | 5.9 |
| ISHhu1 | IS200/IS605 | Halobacterium hubeiense | 28 | 5.9 | |
| ISStu2 | ISAzo13 | Streptomyces turgidiscabies | 28 | 5.9 | |
| ISLbi1 | ISNCY | ISLbi1 | Leptospira biflexa | 28 | 5.9 |
| ISAzs7 | IS66 | ISBst12 | Azospirillum sp. | 28 | 5.9 |
| ISRel5 | IS21 | Rhizobium etli | 28 | 5.9 | |
| ISSpu24 | IS66 | Shewanella putrefaciens | 28 | 5.9 | |
| ISMau1 | IS5 | ISL2 | Micromonospora aurantiaca | 28 | 5.9 |
| ISAzba8 | IS256 | Azospirillum brasilense | 28 | 5.9 | |
| ISMex4 | IS1380 | Methylobacterium extorquens | 28 | 5.9 | |
| ISMysp6 | IS481 | Mycobacterium sp. | 28 | 5.9 | |
| ISGdi9 | IS481 | Gluconacetobacter diazotrophicus | 28 | 5.9 | |
| ISNisp5 | IS1 | ISMhu11 | Nitrobacter sp. | 28 | 5.9 |
| ISTth5 | IS256 | Thermus thermophilus | 28 | 5.9 | |
| ISPa1635 | IS4 | IS4 | Pseudomonas aeruginosa | 28 | 5.9 |
| ISBmu3 | IS21 | Burkholderia multivorans | 28 | 5.9 | |
| ISMmg2 | IS110 | IS1111 | Magnetospirillum magnetotacticum | 28 | 5.9 |
| ISH5 | IS4 | ISH8 | Halobacterium sp. | 28 | 5.9 |
| IS469 | ISL3 | - | Streptomyces coelicolor | 28 | 5.9 |
| IS1112b | IS30 | - | Xanthomonas oryzae | 28 | 5.9 |
| IS1112a | IS30 | - | Xanthomonas oryzae | 28 | 5.9 |
| IS1112 | IS30 | - | Xanthomonas oryzae | 28 | 5.9 |
>ISMex31
Length = 1091
Score = 36.2 bits (18), Expect = 0.024
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 94 gatgccgaggcgatcgcc 111
||||||||||||||||||
Sbjct: 270 gatgccgaggcgatcgcc 287
>ISKpn25
Length = 8154
Score = 34.2 bits (17), Expect = 0.096
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 170 tctgcccagctataggtctgc 190
|||||||||||||||| ||||
Sbjct: 1734 tctgcccagctatagggctgc 1714
>ISEc37
Length = 1828
Score = 30.2 bits (15), Expect = 1.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 123 ccagctctgccagac 137
|||||||||||||||
Sbjct: 1597 ccagctctgccagac 1583
>ISAzs4
Length = 1301
Score = 30.2 bits (15), Expect = 1.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 94 gatgccgaggcgatc 108
|||||||||||||||
Sbjct: 292 gatgccgaggcgatc 306
>ISCps1
Length = 1347
Score = 30.2 bits (15), Expect = 1.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 234 gctgttgagcatgct 248
|||||||||||||||
Sbjct: 245 gctgttgagcatgct 231
>ISMlo3
Length = 1405
Score = 30.2 bits (15), Expect = 1.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 94 gatgccgaggcgatc 108
|||||||||||||||
Sbjct: 368 gatgccgaggcgatc 382
Score = 28.2 bits (14), Expect = 5.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 247 ctgcatcaacaggc 260
||||||||||||||
Sbjct: 1318 ctgcatcaacaggc 1331
>TnXo19
Length = 18767
Score = 28.2 bits (14), Expect = 5.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 129 ctgccagaccgcag 142
||||||||||||||
Sbjct: 8747 ctgccagaccgcag 8734
>ISShdy2
Length = 2496
Score = 28.2 bits (14), Expect = 5.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 212 cgcattgccggccg 225
||||||||||||||
Sbjct: 19 cgcattgccggccg 32
>ISRel7
Length = 1342
Score = 28.2 bits (14), Expect = 5.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 94 gatgccgaggcgat 107
||||||||||||||
Sbjct: 358 gatgccgaggcgat 371
>ISNph26
Length = 1611
Score = 28.2 bits (14), Expect = 5.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 193 gatgccgtattcct 206
||||||||||||||
Sbjct: 1235 gatgccgtattcct 1222
>ISNma16
Length = 1384
Score = 28.2 bits (14), Expect = 5.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 193 gatgccgtattcct 206
||||||||||||||
Sbjct: 1067 gatgccgtattcct 1054
>ISMyma10
Length = 1352
Score = 28.2 bits (14), Expect = 5.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 102 ggcgatcgccccgc 115
||||||||||||||
Sbjct: 913 ggcgatcgccccgc 900
>ISKpn28
Length = 1096
Score = 28.2 bits (14), Expect = 5.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 244 atgctgcatcaaca 257
||||||||||||||
Sbjct: 73 atgctgcatcaaca 60
>ISHbo2
Length = 1671
Score = 28.2 bits (14), Expect = 5.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 193 gatgccgtattcct 206
||||||||||||||
Sbjct: 1298 gatgccgtattcct 1285
>ISHhu1
Length = 1835
Score = 28.2 bits (14), Expect = 5.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 193 gatgccgtattcct 206
||||||||||||||
Sbjct: 1490 gatgccgtattcct 1477
>ISStu2
Length = 1760
Score = 28.2 bits (14), Expect = 5.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 279 cagcctgcccacgg 292
||||||||||||||
Sbjct: 480 cagcctgcccacgg 467
>ISLbi1
Length = 1523
Score = 28.2 bits (14), Expect = 5.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 199 gtattccttctcac 212
||||||||||||||
Sbjct: 955 gtattccttctcac 942
>ISAzs7
Length = 1455
Score = 28.2 bits (14), Expect = 5.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 140 caggcgatggcgcg 153
||||||||||||||
Sbjct: 91 caggcgatggcgcg 78
>ISRel5
Length = 2587
Score = 28.2 bits (14), Expect = 5.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 92 atgatgccgaggcg 105
||||||||||||||
Sbjct: 1706 atgatgccgaggcg 1693
>ISSpu24
Length = 2524
Score = 28.2 bits (14), Expect = 5.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 132 ccagaccgcaggcg 145
||||||||||||||
Sbjct: 1748 ccagaccgcaggcg 1735
>ISMau1
Length = 914
Score = 28.2 bits (14), Expect = 5.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 219 ccggccgggtcggc 232
||||||||||||||
Sbjct: 536 ccggccgggtcggc 523
>ISAzba8
Length = 1321
Score = 28.2 bits (14), Expect = 5.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 98 ccgaggcgatcgcc 111
||||||||||||||
Sbjct: 774 ccgaggcgatcgcc 787
>ISMex4
Length = 1615
Score = 28.2 bits (14), Expect = 5.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 137 ccgcaggcgatggc 150
||||||||||||||
Sbjct: 364 ccgcaggcgatggc 351
>ISMysp6
Length = 1077
Score = 28.2 bits (14), Expect = 5.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 222 gccgggtcggccgc 235
||||||||||||||
Sbjct: 525 gccgggtcggccgc 512
>ISGdi9
Length = 1044
Score = 28.2 bits (14), Expect = 5.9
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 214 cattgccggccgggtcgg 231
||||||||||||| ||||
Sbjct: 678 cattgccggccggatcgg 661
>ISNisp5
Length = 3580
Score = 28.2 bits (14), Expect = 5.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 135 gaccgcaggcgatg 148
||||||||||||||
Sbjct: 2084 gaccgcaggcgatg 2097
>ISTth5
Length = 1263
Score = 28.2 bits (14), Expect = 5.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 4 caccgcatcctgat 17
||||||||||||||
Sbjct: 838 caccgcatcctgat 825
>ISPa1635
Length = 1635
Score = 28.2 bits (14), Expect = 5.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 245 tgctgcatcaacag 258
||||||||||||||
Sbjct: 1142 tgctgcatcaacag 1129
>ISBmu3
Length = 2697
Score = 28.2 bits (14), Expect = 5.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 96 tgccgaggcgatcg 109
||||||||||||||
Sbjct: 1558 tgccgaggcgatcg 1571
>ISMmg2
Length = 1380
Score = 28.2 bits (14), Expect = 5.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 247 ctgcatcaacaggc 260
||||||||||||||
Sbjct: 1293 ctgcatcaacaggc 1306
>ISH5
Length = 1442
Score = 28.2 bits (14), Expect = 5.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 272 ttcagttcagcctg 285
||||||||||||||
Sbjct: 534 ttcagttcagcctg 521
>IS469
Length = 1647
Score = 28.2 bits (14), Expect = 5.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 95 atgccgaggcgatc 108
||||||||||||||
Sbjct: 718 atgccgaggcgatc 731
>IS1112b
Length = 1055
Score = 28.2 bits (14), Expect = 5.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 142 ggcgatggcgcgca 155
||||||||||||||
Sbjct: 175 ggcgatggcgcgca 162
>IS1112a
Length = 1055
Score = 28.2 bits (14), Expect = 5.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 142 ggcgatggcgcgca 155
||||||||||||||
Sbjct: 175 ggcgatggcgcgca 162
>IS1112
Length = 1055
Score = 28.2 bits (14), Expect = 5.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 142 ggcgatggcgcgca 155
||||||||||||||
Sbjct: 175 ggcgatggcgcgca 162
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_113_length_299_cov_0.891892_ID_5396
(299 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| IS298 | IS5 | IS427 | Caulobacter crescentus | 32 | 0.38 |
| ISSav5 | IS481 | Streptomyces avermitilis | 30 | 1.5 | |
| ISThsp1 | IS1182 | Thiomonas sp. | 30 | 1.5 | |
| ISTth8 | IS701 | Thermus thermophilus | 30 | 1.5 | |
| ISMyma9 | IS21 | Mycobacterium marinum | 28 | 5.9 | |
| ISTni1 | ISKra4 | ISKra4 | Thioalkalivibrio nitratireducens | 28 | 5.9 |
| ISTni2 | IS481 | Thioalkalivibrio nitratireducens | 28 | 5.9 | |
| ISCap2 | IS5 | IS903 | Candidatus Accumulibacter phosphatis | 28 | 5.9 |
| ISPam4 | IS5 | IS427 | Paracoccus aminophilus | 28 | 5.9 |
| ISPfr6 | ISL3 | Propionibacterium freudenreichii | 28 | 5.9 | |
| ISAar20 | ISL3 | Arthrobacter arilaitensis | 28 | 5.9 | |
| ISMdi28 | IS701 | Methylobacterium dichloromethanicum | 28 | 5.9 | |
| ISXau4 | IS66 | Xanthobacter autotrophicus | 28 | 5.9 | |
| ISAzca2 | IS66 | Azorhizobium caulinodans | 28 | 5.9 | |
| ISRel3 | IS21 | Rhizobium etli | 28 | 5.9 | |
| ISMrsp1 | IS1595 | ISPna2 | Marinobacter sp. | 28 | 5.9 |
| ISNfa1 | IS481 | Nocardia farcinica | 28 | 5.9 | |
| ISPa32 | IS3 | IS407 | Pseudomonas aeruginosa | 28 | 5.9 |
| ISMca7 | IS5 | IS5 | Methylococcus capsulatus | 28 | 5.9 |
| ISBcen19 | IS66 | Burkholderia cenocepacia | 28 | 5.9 | |
| IS71 | IS66 | - | Agrobacterium tumefaciens | 28 | 5.9 |
| IS1016 | IS1595 | IS1016 | Neisseria gonorrhoeae | 28 | 5.9 |
>IS298
Length = 845
Score = 32.2 bits (16), Expect = 0.38
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 201 ccagcatgcggcgggc 216
||||||||||||||||
Sbjct: 380 ccagcatgcggcgggc 395
>ISSav5
Length = 1953
Score = 30.2 bits (15), Expect = 1.5
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 186 ggatgatgtcctcggccag 204
|||||| ||||||||||||
Sbjct: 1792 ggatgacgtcctcggccag 1774
>ISThsp1
Length = 1539
Score = 30.2 bits (15), Expect = 1.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 170 ggctcggcgatccac 184
|||||||||||||||
Sbjct: 1246 ggctcggcgatccac 1232
>ISTth8
Length = 1016
Score = 30.2 bits (15), Expect = 1.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 119 acgcggcgcggcagg 133
|||||||||||||||
Sbjct: 526 acgcggcgcggcagg 540
>ISMyma9
Length = 2162
Score = 28.2 bits (14), Expect = 5.9
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 113 accagcacgcggcgcggc 130
|||||| |||||||||||
Sbjct: 1425 accagcccgcggcgcggc 1408
>ISTni1
Length = 2377
Score = 28.2 bits (14), Expect = 5.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 142 ggcgccggtgccga 155
||||||||||||||
Sbjct: 388 ggcgccggtgccga 401
>ISTni2
Length = 3451
Score = 28.2 bits (14), Expect = 5.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 194 tcctcggccagcat 207
||||||||||||||
Sbjct: 1576 tcctcggccagcat 1563
>ISCap2
Length = 1123
Score = 28.2 bits (14), Expect = 5.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 67 ggcgttggtgtagt 80
||||||||||||||
Sbjct: 1 ggcgttggtgtagt 14
>ISPam4
Length = 865
Score = 28.2 bits (14), Expect = 5.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 209 cggcgggccaggtc 222
||||||||||||||
Sbjct: 516 cggcgggccaggtc 529
>ISPfr6
Length = 1436
Score = 28.2 bits (14), Expect = 5.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 61 gcggtgggcgttgg 74
||||||||||||||
Sbjct: 455 gcggtgggcgttgg 468
>ISAar20
Length = 1449
Score = 28.2 bits (14), Expect = 5.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 61 gcggtgggcgttgg 74
||||||||||||||
Sbjct: 1164 gcggtgggcgttgg 1177
>ISMdi28
Length = 1410
Score = 28.2 bits (14), Expect = 5.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 20 tcggccacgtagcc 33
||||||||||||||
Sbjct: 317 tcggccacgtagcc 304
>ISXau4
Length = 2458
Score = 28.2 bits (14), Expect = 5.9
Identities = 20/22 (90%)
Strand = Plus / Minus
Query: 124 gcgcggcagggcctcgttggcg 145
|||| ||||||||||| |||||
Sbjct: 1956 gcgctgcagggcctcgctggcg 1935
>ISAzca2
Length = 2458
Score = 28.2 bits (14), Expect = 5.9
Identities = 20/22 (90%)
Strand = Plus / Minus
Query: 124 gcgcggcagggcctcgttggcg 145
|||| ||||||||||| |||||
Sbjct: 1956 gcgctgcagggcctcgctggcg 1935
>ISRel3
Length = 2308
Score = 28.2 bits (14), Expect = 5.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 210 ggcgggccaggtcg 223
||||||||||||||
Sbjct: 769 ggcgggccaggtcg 756
>ISMrsp1
Length = 1035
Score = 28.2 bits (14), Expect = 5.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 94 ttcgttggcgtcat 107
||||||||||||||
Sbjct: 444 ttcgttggcgtcat 457
>ISNfa1
Length = 1112
Score = 28.2 bits (14), Expect = 5.9
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 194 tcctcggccagcatgcgg 211
||||||||||| ||||||
Sbjct: 951 tcctcggccaggatgcgg 934
>ISPa32
Length = 1236
Score = 28.2 bits (14), Expect = 5.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 239 agcagaagacggca 252
||||||||||||||
Sbjct: 55 agcagaagacggca 68
>ISMca7
Length = 1172
Score = 28.2 bits (14), Expect = 5.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 120 cgcggcgcggcagg 133
||||||||||||||
Sbjct: 759 cgcggcgcggcagg 772
>ISBcen19
Length = 2450
Score = 28.2 bits (14), Expect = 5.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 167 gagggctcggcgat 180
||||||||||||||
Sbjct: 2077 gagggctcggcgat 2090
>IS71
Length = 2386
Score = 28.2 bits (14), Expect = 5.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 282 acgtgtgctcttcc 295
||||||||||||||
Sbjct: 673 acgtgtgctcttcc 660
>IS1016
Length = 713
Score = 28.2 bits (14), Expect = 5.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 120 cgcggcgcggcagg 133
||||||||||||||
Sbjct: 289 cgcggcgcggcagg 302
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_114_length_298_cov_0.972851_ID_5398
(298 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| TnXo19 | Tn3 | Xanthomonas oryzae | 32 | 0.38 | |
| ISSm4 | ISL3 | Serratia marcescens | 30 | 1.5 | |
| ISEc45 | IS110 | IS1111 | Escherichia coli | 30 | 1.5 |
| ISAzs23 | IS3 | IS3 | Azospirillum sp. | 30 | 1.5 |
| ISRce2 | IS1182 | Rhodospirillum centenum | 30 | 1.5 | |
| ISMno37 | IS6 | Methylobacterium nodulans | 30 | 1.5 | |
| ISMch8 | IS5 | IS5 | Methylobacterium chloromethanicum | 30 | 1.5 |
| ISMaq3 | IS1380 | Marinobacter aquaeolei | 30 | 1.5 | |
| ISCARN57 | IS110 | Metagenomic data from CARNOULES | 30 | 1.5 | |
| ISCARN40 | IS256 | Metagenomic data from CARNOULES | 30 | 1.5 | |
| ISGpr3 | IS3 | IS51 | Marine gamma proteobacterium | 30 | 1.5 |
| ISNe7 | IS1595 | ISPna2 | Nitrosomonas europaea | 30 | 1.5 |
| ISMpo4 | IS110 | IS1111 | Methylobacterium populi | 28 | 5.9 |
| ISNaoc4 | IS200/IS605 | IS1341 | Natronococcus occultus | 28 | 5.9 |
| ISHla22 | IS200/IS605 | IS1341 | Halorubrum lacusprofundi | 28 | 5.9 |
| TnShfr1 | Tn3 | Shewanella frigidimarina | 28 | 5.9 | |
| ISRme20 | IS21 | Ralstonia metallidurans | 28 | 5.9 | |
| ISAzs36 | IS481 | Azospirillum sp. | 28 | 5.9 | |
| ISAzs14 | IS630 | Azospirillum sp. | 28 | 5.9 | |
| ISMgi2 | IS1182 | Mycobacterium gilvum | 28 | 5.9 | |
| ISShes11 | Tn3 | Shewanella sp. | 28 | 5.9 | |
| ISBph2 | IS5 | Burkholderia phymatum | 28 | 5.9 | |
| ISMno9 | IS1182 | Methylobacterium nodulans | 28 | 5.9 | |
| ISShsp2 | IS1182 | Sphingomonas sp. | 28 | 5.9 | |
| ISAde1 | IS66 | Anaeromyxobacter dehalogenans | 28 | 5.9 | |
| ISMdi18 | IS1595 | ISNwi1 | Methylobacterium dichloromethanicum | 28 | 5.9 |
| ISMex38 | Tn3 | Methylobacterium extorquens | 28 | 5.9 | |
| ISAli20 | Tn3 | Azospirillum lipoferum | 28 | 5.9 | |
| ISBj7_B | IS66 | Bradyrhizobium japonicum | 28 | 5.9 | |
| ISAfe4 | IS66 | Acidithiobacillus ferrooxidans | 28 | 5.9 | |
| ISStau3 | IS66 | ISBst12 | Stigmatella aurantiaca | 28 | 5.9 |
| ISAli3 | IS630 | Azospirillum lipoferum | 28 | 5.9 | |
| ISTth5 | IS256 | Thermus thermophilus | 28 | 5.9 | |
| ISRhosp3 | IS701 | Rhodococcus sp. | 28 | 5.9 | |
| ISPosp2 | IS701 | Polaromonas sp. | 28 | 5.9 | |
| ISAzvi8 | IS701 | Azotobacter vinelandii | 28 | 5.9 | |
| ISXax1 | IS256 | Xanthomonas axonopodis | 28 | 5.9 | |
| Tn3 | Tn3 | Salmonella wien | 28 | 5.9 | |
| ISRso14 | IS3 | IS407 | Ralstonia solanacearum | 28 | 5.9 |
| IS931 | IS256 | - | Burkholderia cepacia | 28 | 5.9 |
| IS1601 | IS256 | - | Mycobacterium avium | 28 | 5.9 |
>TnXo19
Length = 18767
Score = 32.2 bits (16), Expect = 0.38
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 112 catcggcgtgatcgcc 127
||||||||||||||||
Sbjct: 15131 catcggcgtgatcgcc 15116
>ISSm4
Length = 9109
Score = 30.2 bits (15), Expect = 1.5
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 114 tcggcgtgatcgccgcgat 132
||||||||||||| |||||
Sbjct: 5651 tcggcgtgatcgctgcgat 5669
>ISEc45
Length = 1447
Score = 30.2 bits (15), Expect = 1.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 25 gatcttcaatctgct 39
|||||||||||||||
Sbjct: 668 gatcttcaatctgct 654
>ISAzs23
Length = 1596
Score = 30.2 bits (15), Expect = 1.5
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 115 cggcgtgatcgccgcgatc 133
||||| |||||||||||||
Sbjct: 264 cggcgggatcgccgcgatc 282
>ISRce2
Length = 1528
Score = 30.2 bits (15), Expect = 1.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 222 gcgccatcctcggcg 236
|||||||||||||||
Sbjct: 925 gcgccatcctcggcg 939
>ISMno37
Length = 889
Score = 30.2 bits (15), Expect = 1.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 145 ggagatgctgctcga 159
|||||||||||||||
Sbjct: 219 ggagatgctgctcga 233
>ISMch8
Length = 1494
Score = 30.2 bits (15), Expect = 1.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 115 cggcgtgatcgccgc 129
|||||||||||||||
Sbjct: 1331 cggcgtgatcgccgc 1317
>ISMaq3
Length = 1560
Score = 30.2 bits (15), Expect = 1.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 149 atgctgctcgataaa 163
|||||||||||||||
Sbjct: 507 atgctgctcgataaa 493
>ISCARN57
Length = 1211
Score = 30.2 bits (15), Expect = 1.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 126 ccgcgatcgtgcaga 140
|||||||||||||||
Sbjct: 450 ccgcgatcgtgcaga 436
>ISCARN40
Length = 1264
Score = 30.2 bits (15), Expect = 1.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 59 ggctgggccggcttc 73
|||||||||||||||
Sbjct: 389 ggctgggccggcttc 403
>ISGpr3
Length = 1230
Score = 30.2 bits (15), Expect = 1.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 91 ctatctcggcctgct 105
|||||||||||||||
Sbjct: 256 ctatctcggcctgct 242
>ISNe7
Length = 1050
Score = 30.2 bits (15), Expect = 1.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 32 aatctgctgttgcgc 46
|||||||||||||||
Sbjct: 668 aatctgctgttgcgc 654
>ISMpo4
Length = 1767
Score = 28.2 bits (14), Expect = 5.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 44 cgcgaaggcgcgct 57
||||||||||||||
Sbjct: 1421 cgcgaaggcgcgct 1408
>ISNaoc4
Length = 1568
Score = 28.2 bits (14), Expect = 5.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 223 cgccatcctcggcg 236
||||||||||||||
Sbjct: 807 cgccatcctcggcg 820
>ISHla22
Length = 1515
Score = 28.2 bits (14), Expect = 5.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 223 cgccatcctcggcg 236
||||||||||||||
Sbjct: 762 cgccatcctcggcg 775
>TnShfr1
Length = 5131
Score = 28.2 bits (14), Expect = 5.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 112 catcggcgtgatcg 125
||||||||||||||
Sbjct: 547 catcggcgtgatcg 534
>ISRme20
Length = 1977
Score = 28.2 bits (14), Expect = 5.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 64 ggccggcttccctg 77
||||||||||||||
Sbjct: 1287 ggccggcttccctg 1300
>ISAzs36
Length = 2622
Score = 28.2 bits (14), Expect = 5.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 147 agatgctgctcgat 160
||||||||||||||
Sbjct: 2367 agatgctgctcgat 2354
>ISAzs14
Length = 1176
Score = 28.2 bits (14), Expect = 5.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 6 ccgtgccggccaac 19
||||||||||||||
Sbjct: 936 ccgtgccggccaac 949
>ISMgi2
Length = 1770
Score = 28.2 bits (14), Expect = 5.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 120 tgatcgccgcgatc 133
||||||||||||||
Sbjct: 553 tgatcgccgcgatc 566
>ISShes11
Length = 7669
Score = 28.2 bits (14), Expect = 5.9
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 227 atcctcggcggtacgctg 244
|||||||||||| |||||
Sbjct: 3853 atcctcggcggtgcgctg 3870
>ISBph2
Length = 1335
Score = 28.2 bits (14), Expect = 5.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 180 acaacgcgctgggc 193
||||||||||||||
Sbjct: 999 acaacgcgctgggc 1012
>ISMno9
Length = 1548
Score = 28.2 bits (14), Expect = 5.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 15 ccaactacctgatc 28
||||||||||||||
Sbjct: 750 ccaactacctgatc 763
>ISShsp2
Length = 1526
Score = 28.2 bits (14), Expect = 5.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 15 ccaactacctgatc 28
||||||||||||||
Sbjct: 739 ccaactacctgatc 752
>ISAde1
Length = 2957
Score = 28.2 bits (14), Expect = 5.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 127 cgcgatcgtgcaga 140
||||||||||||||
Sbjct: 547 cgcgatcgtgcaga 560
>ISMdi18
Length = 3479
Score = 28.2 bits (14), Expect = 5.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 210 tcaccgtgaactgc 223
||||||||||||||
Sbjct: 247 tcaccgtgaactgc 234
>ISMex38
Length = 3841
Score = 28.2 bits (14), Expect = 5.9
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 119 gtgatcgccgcgatcgtg 136
||||||||||| ||||||
Sbjct: 3556 gtgatcgccgccatcgtg 3573
>ISAli20
Length = 3828
Score = 28.2 bits (14), Expect = 5.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 122 atcgccgcgatcgt 135
||||||||||||||
Sbjct: 3547 atcgccgcgatcgt 3560
>ISBj7_B
Length = 2865
Score = 28.2 bits (14), Expect = 5.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 117 gcgtgatcgccgcg 130
||||||||||||||
Sbjct: 1946 gcgtgatcgccgcg 1933
>ISAfe4
Length = 2477
Score = 28.2 bits (14), Expect = 5.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 134 gtgcagattctgga 147
||||||||||||||
Sbjct: 383 gtgcagattctgga 396
>ISStau3
Length = 1579
Score = 28.2 bits (14), Expect = 5.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 268 catgtccgaaagcg 281
||||||||||||||
Sbjct: 681 catgtccgaaagcg 668
>ISAli3
Length = 1167
Score = 28.2 bits (14), Expect = 5.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 223 cgccatcctcggcg 236
||||||||||||||
Sbjct: 411 cgccatcctcggcg 398
>ISTth5
Length = 1263
Score = 28.2 bits (14), Expect = 5.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 67 cggcttccctgacg 80
||||||||||||||
Sbjct: 128 cggcttccctgacg 115
>ISRhosp3
Length = 1349
Score = 28.2 bits (14), Expect = 5.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 120 tgatcgccgcgatc 133
||||||||||||||
Sbjct: 762 tgatcgccgcgatc 775
>ISPosp2
Length = 1484
Score = 28.2 bits (14), Expect = 5.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 252 tcgagcgcgactac 265
||||||||||||||
Sbjct: 1130 tcgagcgcgactac 1143
>ISAzvi8
Length = 1482
Score = 28.2 bits (14), Expect = 5.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 252 tcgagcgcgactac 265
||||||||||||||
Sbjct: 1122 tcgagcgcgactac 1135
>ISXax1
Length = 1329
Score = 28.2 bits (14), Expect = 5.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 60 gctgggccggcttc 73
||||||||||||||
Sbjct: 386 gctgggccggcttc 399
>Tn3
Length = 4948
Score = 28.2 bits (14), Expect = 5.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 143 ctggagatgctgct 156
||||||||||||||
Sbjct: 2495 ctggagatgctgct 2508
>ISRso14
Length = 1234
Score = 28.2 bits (14), Expect = 5.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 248 atggtcgagcgcga 261
||||||||||||||
Sbjct: 597 atggtcgagcgcga 584
>IS931
Length = 1477
Score = 28.2 bits (14), Expect = 5.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 4 caccgtgccggcca 17
||||||||||||||
Sbjct: 596 caccgtgccggcca 583
>IS1601
Length = 1417
Score = 28.2 bits (14), Expect = 5.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 204 cgctgatcaccgtg 217
||||||||||||||
Sbjct: 430 cgctgatcaccgtg 443
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_115_length_296_cov_1_ID_5400
(296 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISSsv1 | IS5 | IS427 | Streptomyces sviceus | 32 | 0.37 |
| ISBbi1 | IS1595 | Bifidobacterium bifidum | 32 | 0.37 | |
| ISPak1 | IS5 | IS427 | Paracoccus alkenifer | 30 | 1.5 |
| ISJsp1 | IS3 | IS51 | Janthinobacterium sp. | 30 | 1.5 |
| ISEc20 | IS110 | Escherichia coli | 30 | 1.5 | |
| ISSfl4 | IS110 | - | Shigella flexneri | 30 | 1.5 |
| TnXo19 | Tn3 | Xanthomonas oryzae | 28 | 5.8 | |
| ISNma12 | IS200/IS605 | IS605 | Natrialba magadii | 28 | 5.8 |
| ISHwa28 | IS200/IS605 | IS1341 | Haloquadratum walsbyi | 28 | 5.8 |
| TnAs1 | Tn3 | Aeromonas salmonicida | 28 | 5.8 | |
| ISBj2 | IS5 | IS427 | Bradyrhizobium japonicum | 28 | 5.8 |
| ISPa51 | IS5 | IS5 | Pseudomonas aeruginosa | 28 | 5.8 |
| ISSysp8 | ISKra4 | ISMich2 | Synechococcus sp. | 28 | 5.8 |
| ISHvo12 | IS4 | ISH8 | Haloferax volcanii | 28 | 5.8 |
| ISAzs29 | Tn3 | Azospirillum sp. | 28 | 5.8 | |
| ISAcp1 | IS5 | IS5 | Acidobacterium capsulatum | 28 | 5.8 |
| ISPfr8 | ISL3 | Propionibacterium freudenreichii | 28 | 5.8 | |
| ISArsp6 | Tn3 | Arthrobacter sp. | 28 | 5.8 | |
| ISMch4 | IS110 | IS1111 | Methylobacterium chloromethanicum | 28 | 5.8 |
| ISCARN26 | IS110 | Metagenomic data from CARNOULES | 28 | 5.8 | |
| ISNisp5 | IS1 | ISMhu11 | Nitrobacter sp. | 28 | 5.8 |
| ISSam1 | IS110 | Streptomyces ambofaciens | 28 | 5.8 | |
| ISSod15 | IS3 | IS3 | Shewanella oneidensis | 28 | 5.8 |
| ISSme1 | IS3 | IS407 | Sinorhizobium medicae | 28 | 5.8 |
| ISPna2 | IS1595 | ISPna2 | Polaromonas naphthalenivorans | 28 | 5.8 |
| ISAzo25 | IS1182 | Azoarcus sp. | 28 | 5.8 | |
| ISRm6 | IS3 | IS407 | Rhizobium meliloti | 28 | 5.8 |
| IS1549 | IS1634 | - | Mycobacterium smegmatis | 28 | 5.8 |
>ISSsv1
Length = 967
Score = 32.2 bits (16), Expect = 0.37
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 78 gccgggcgaagacgcc 93
||||||||||||||||
Sbjct: 359 gccgggcgaagacgcc 344
>ISBbi1
Length = 981
Score = 32.2 bits (16), Expect = 0.37
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 244 gacatctccgatctgg 259
||||||||||||||||
Sbjct: 724 gacatctccgatctgg 739
>ISPak1
Length = 853
Score = 30.2 bits (15), Expect = 1.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 79 ccgggcgaagacgcc 93
|||||||||||||||
Sbjct: 287 ccgggcgaagacgcc 273
>ISJsp1
Length = 1312
Score = 30.2 bits (15), Expect = 1.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 77 cgccgggcgaagacg 91
|||||||||||||||
Sbjct: 849 cgccgggcgaagacg 835
>ISEc20
Length = 1459
Score = 30.2 bits (15), Expect = 1.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 168 cggtcctgacaccga 182
|||||||||||||||
Sbjct: 1096 cggtcctgacaccga 1082
>ISSfl4
Length = 1451
Score = 30.2 bits (15), Expect = 1.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 168 cggtcctgacaccga 182
|||||||||||||||
Sbjct: 1096 cggtcctgacaccga 1082
>TnXo19
Length = 18767
Score = 28.2 bits (14), Expect = 5.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 26 ccgaagccacgcgc 39
||||||||||||||
Sbjct: 2010 ccgaagccacgcgc 2023
>ISNma12
Length = 1923
Score = 28.2 bits (14), Expect = 5.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 110 ttgaagccgccgct 123
||||||||||||||
Sbjct: 1272 ttgaagccgccgct 1259
>ISHwa28
Length = 1482
Score = 28.2 bits (14), Expect = 5.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 174 tgacaccgaggtcg 187
||||||||||||||
Sbjct: 758 tgacaccgaggtcg 745
>TnAs1
Length = 6694
Score = 28.2 bits (14), Expect = 5.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 266 ccgacctgtcgctg 279
||||||||||||||
Sbjct: 3795 ccgacctgtcgctg 3808
>ISBj2
Length = 830
Score = 28.2 bits (14), Expect = 5.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 9 cgctcagcgcatgg 22
||||||||||||||
Sbjct: 456 cgctcagcgcatgg 443
>ISPa51
Length = 1208
Score = 28.2 bits (14), Expect = 5.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 251 ccgatctggaaagc 264
||||||||||||||
Sbjct: 147 ccgatctggaaagc 160
>ISSysp8
Length = 1187
Score = 28.2 bits (14), Expect = 5.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 124 gacagcgcaacaga 137
||||||||||||||
Sbjct: 260 gacagcgcaacaga 273
>ISHvo12
Length = 1395
Score = 28.2 bits (14), Expect = 5.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 97 acgctggacgacat 110
||||||||||||||
Sbjct: 188 acgctggacgacat 175
>ISAzs29
Length = 3897
Score = 28.2 bits (14), Expect = 5.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 14 agcgcatggtggcc 27
||||||||||||||
Sbjct: 1354 agcgcatggtggcc 1367
>ISAcp1
Length = 1483
Score = 28.2 bits (14), Expect = 5.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 32 ccacgcgcctgatg 45
||||||||||||||
Sbjct: 288 ccacgcgcctgatg 301
>ISPfr8
Length = 1436
Score = 28.2 bits (14), Expect = 5.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 81 gggcgaagacgccc 94
||||||||||||||
Sbjct: 1065 gggcgaagacgccc 1052
>ISArsp6
Length = 26712
Score = 28.2 bits (14), Expect = 5.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 54 gcgccccgaagaca 67
||||||||||||||
Sbjct: 4215 gcgccccgaagaca 4202
>ISMch4
Length = 1631
Score = 28.2 bits (14), Expect = 5.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 236 ccgacctcgacatc 249
||||||||||||||
Sbjct: 1442 ccgacctcgacatc 1429
>ISCARN26
Length = 1214
Score = 28.2 bits (14), Expect = 5.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 149 ccgaggccgacgac 162
||||||||||||||
Sbjct: 957 ccgaggccgacgac 970
>ISNisp5
Length = 3580
Score = 28.2 bits (14), Expect = 5.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 111 tgaagccgccgctg 124
||||||||||||||
Sbjct: 273 tgaagccgccgctg 286
>ISSam1
Length = 1489
Score = 28.2 bits (14), Expect = 5.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 220 ctcgacctgaccga 233
||||||||||||||
Sbjct: 639 ctcgacctgaccga 652
>ISSod15
Length = 1253
Score = 28.2 bits (14), Expect = 5.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 10 gctcagcgcatggt 23
||||||||||||||
Sbjct: 1123 gctcagcgcatggt 1110
>ISSme1
Length = 1271
Score = 28.2 bits (14), Expect = 5.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 69 cgaacagtcgccgg 82
||||||||||||||
Sbjct: 528 cgaacagtcgccgg 515
>ISPna2
Length = 1049
Score = 28.2 bits (14), Expect = 5.8
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 149 ccgaggccgacgacacct 166
||||||||||||| ||||
Sbjct: 518 ccgaggccgacgagacct 535
>ISAzo25
Length = 1388
Score = 28.2 bits (14), Expect = 5.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 150 cgaggccgacgaca 163
||||||||||||||
Sbjct: 976 cgaggccgacgaca 963
>ISRm6
Length = 1261
Score = 28.2 bits (14), Expect = 5.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 69 cgaacagtcgccgg 82
||||||||||||||
Sbjct: 523 cgaacagtcgccgg 510
>IS1549
Length = 1640
Score = 28.2 bits (14), Expect = 5.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 231 cgacaccgacctcg 244
||||||||||||||
Sbjct: 506 cgacaccgacctcg 493
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_116_length_295_cov_0.958716_ID_5402
(295 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISMpa1 | IS110 | Mycobacterium avium | 34 | 0.094 | |
| ISHko4 | IS200/IS605 | IS1341 | Halorubrum kocurii | 32 | 0.37 |
| ISNph14 | IS200/IS605 | IS1341 | Natronomonas pharaonis | 32 | 0.37 |
| ISBfun3 | IS1182 | Burkholderia fungorum | 32 | 0.37 | |
| ISSis7 | IS607 | Sulfolobus islandicus | 30 | 1.5 | |
| ISStsp9 | IS5 | IS427 | Streptomyces sp. | 30 | 1.5 |
| ISCef6 | IS1380 | Corynebacterium efficiens | 30 | 1.5 | |
| ISThsp9 | Tn3 | Thiomonas sp. | 30 | 1.5 | |
| ISCARN5 | IS110 | IS1111 | Metagenomic data from CARNOULES | 30 | 1.5 |
| ISStag1 | IS6 | Stappia aggregata | 30 | 1.5 | |
| ISMyma6 | IS481 | - | Mycobacterium marinum | 30 | 1.5 |
| ISHsp1 | IS5 | IS5 | Halomonas sp. | 30 | 1.5 |
| ISTha3 | IS91 | Thauera sp. | 28 | 5.8 | |
| ISSis5 | IS607 | Sulfolobus islandicus | 28 | 5.8 | |
| ISCco2 | IS1595 | ISPna2 | Campylobacter coli | 28 | 5.8 |
| ISStvi1 | ISAzo13 | Streptomyces violaceusniger | 28 | 5.8 | |
| ISRssp6 | ISKra4 | ISAzba1 | Roseovarius sp. | 28 | 5.8 |
| ISNisp4 | IS256 | Nitrobacter sp. | 28 | 5.8 | |
| ISActu1 | IS256 | Actinomyces turicensis | 28 | 5.8 | |
| ISDsp4 | IS3 | IS150 | Dehalococcoides sp. | 28 | 5.8 |
| ISMdi13 | IS256 | Methylobacterium dichloromethanicum | 28 | 5.8 | |
| ISCARN59 | IS256 | Metagenomic data from CARNOULES | 28 | 5.8 | |
| ISAli11 | ISL3 | Azospirillum lipoferum | 28 | 5.8 | |
| ISGme9 | IS481 | Geobacter metallireducens | 28 | 5.8 | |
| ISRhba3 | IS481 | Rhodobacterales bacterium | 28 | 5.8 | |
| ISBcen10 | IS3 | IS150 | Burkholderia cenocepacia | 28 | 5.8 |
| ISAtu2 | IS5 | IS5 | Agrobacterium tumefaciens | 28 | 5.8 |
| ISSto11 | IS607 | Sulfolobus tokodaii | 28 | 5.8 |
>ISMpa1
Length = 1500
Score = 34.2 bits (17), Expect = 0.094
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 117 tagatgtcggcgtccgg 133
|||||||||||||||||
Sbjct: 1067 tagatgtcggcgtccgg 1051
>ISHko4
Length = 1517
Score = 32.2 bits (16), Expect = 0.37
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 239 caccgcgacctccccg 254
||||||||||||||||
Sbjct: 691 caccgcgacctccccg 706
>ISNph14
Length = 1428
Score = 32.2 bits (16), Expect = 0.37
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 239 caccgcgacctccccg 254
||||||||||||||||
Sbjct: 598 caccgcgacctccccg 613
>ISBfun3
Length = 1627
Score = 32.2 bits (16), Expect = 0.37
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 41 gaggggcgcgtgctct 56
||||||||||||||||
Sbjct: 479 gaggggcgcgtgctct 494
>ISSis7
Length = 1929
Score = 30.2 bits (15), Expect = 1.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 143 ctggggcaggacttg 157
|||||||||||||||
Sbjct: 1663 ctggggcaggacttg 1649
>ISStsp9
Length = 956
Score = 30.2 bits (15), Expect = 1.5
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 149 caggacttgcaccagccgg 167
|||||| ||||||||||||
Sbjct: 234 caggacctgcaccagccgg 216
>ISCef6
Length = 1684
Score = 30.2 bits (15), Expect = 1.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 91 gctgatgccgcaggg 105
|||||||||||||||
Sbjct: 214 gctgatgccgcaggg 228
>ISThsp9
Length = 6215
Score = 30.2 bits (15), Expect = 1.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 180 tagcgctcgatgtcc 194
|||||||||||||||
Sbjct: 238 tagcgctcgatgtcc 252
>ISCARN5
Length = 1367
Score = 30.2 bits (15), Expect = 1.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 279 accttgatggcttcc 293
|||||||||||||||
Sbjct: 470 accttgatggcttcc 456
>ISStag1
Length = 889
Score = 30.2 bits (15), Expect = 1.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 273 ccgcgaaccttgatg 287
|||||||||||||||
Sbjct: 319 ccgcgaaccttgatg 305
>ISMyma6
Length = 1072
Score = 30.2 bits (15), Expect = 1.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 215 gccgtggccgtcgag 229
|||||||||||||||
Sbjct: 227 gccgtggccgtcgag 213
>ISHsp1
Length = 1518
Score = 30.2 bits (15), Expect = 1.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 30 tgcacgaaccggagg 44
|||||||||||||||
Sbjct: 918 tgcacgaaccggagg 932
>ISTha3
Length = 2424
Score = 28.2 bits (14), Expect = 5.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 268 ggtggccgcgaacc 281
||||||||||||||
Sbjct: 2410 ggtggccgcgaacc 2397
>ISSis5
Length = 1935
Score = 28.2 bits (14), Expect = 5.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 143 ctggggcaggactt 156
||||||||||||||
Sbjct: 1663 ctggggcaggactt 1650
>ISCco2
Length = 7852
Score = 28.2 bits (14), Expect = 5.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 30 tgcacgaaccggag 43
||||||||||||||
Sbjct: 4643 tgcacgaaccggag 4656
>ISStvi1
Length = 1738
Score = 28.2 bits (14), Expect = 5.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 254 gtcgttggtggtga 267
||||||||||||||
Sbjct: 732 gtcgttggtggtga 719
>ISRssp6
Length = 1454
Score = 28.2 bits (14), Expect = 5.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 198 tccgcccgcatcag 211
||||||||||||||
Sbjct: 956 tccgcccgcatcag 969
>ISNisp4
Length = 1418
Score = 28.2 bits (14), Expect = 5.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 43 ggggcgcgtgctct 56
||||||||||||||
Sbjct: 175 ggggcgcgtgctct 188
>ISActu1
Length = 1440
Score = 28.2 bits (14), Expect = 5.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 195 cattccgcccgcat 208
||||||||||||||
Sbjct: 479 cattccgcccgcat 466
>ISDsp4
Length = 1305
Score = 28.2 bits (14), Expect = 5.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 280 ccttgatggcttcc 293
||||||||||||||
Sbjct: 147 ccttgatggcttcc 134
>ISMdi13
Length = 1416
Score = 28.2 bits (14), Expect = 5.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 43 ggggcgcgtgctct 56
||||||||||||||
Sbjct: 174 ggggcgcgtgctct 187
>ISCARN59
Length = 1360
Score = 28.2 bits (14), Expect = 5.8
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 172 tgttcaaatagcgctcga 189
|||||||||||| |||||
Sbjct: 187 tgttcaaatagctctcga 170
>ISAli11
Length = 1739
Score = 28.2 bits (14), Expect = 5.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 238 tcaccgcgacctcc 251
||||||||||||||
Sbjct: 825 tcaccgcgacctcc 838
>ISGme9
Length = 1353
Score = 28.2 bits (14), Expect = 5.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 209 cagaatgccgtggc 222
||||||||||||||
Sbjct: 91 cagaatgccgtggc 78
>ISRhba3
Length = 999
Score = 28.2 bits (14), Expect = 5.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 233 ccagttcaccgcga 246
||||||||||||||
Sbjct: 550 ccagttcaccgcga 563
>ISBcen10
Length = 1447
Score = 28.2 bits (14), Expect = 5.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 259 tggtggtgaggtgg 272
||||||||||||||
Sbjct: 422 tggtggtgaggtgg 409
>ISAtu2
Length = 1353
Score = 28.2 bits (14), Expect = 5.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 91 gctgatgccgcagg 104
||||||||||||||
Sbjct: 123 gctgatgccgcagg 136
>ISSto11
Length = 1923
Score = 28.2 bits (14), Expect = 5.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 143 ctggggcaggactt 156
||||||||||||||
Sbjct: 1656 ctggggcaggactt 1643
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_117_length_295_cov_0.876147_ID_5404
(295 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISAzs7 | IS66 | ISBst12 | Azospirillum sp. | 38 | 0.006 |
| ISAzs25 | IS1380 | Azospirillum sp. | 32 | 0.37 | |
| ISXoo5 | IS5 | IS5 | Xanthomonas oryzae | 32 | 0.37 |
| ISGob1 | IS66 | ISBst12 | Gemmata obscuriglobus | 32 | 0.37 |
| ISCur2 | IS256 | IS1249 | Corynebacterium urealyticum | 30 | 1.5 |
| IS3507 | IS256 | IS1249 | Corynebacterium jeikeium | 30 | 1.5 |
| ISXoo14 | IS5 | Xanthomonas oryzae | 30 | 1.5 | |
| ISPfr21 | IS481 | Propionibacterium freudenreichii | 30 | 1.5 | |
| ISMex33 | IS3 | IS51 | Methylobacterium extorquens | 30 | 1.5 |
| ISAli6 | IS256 | Azospirillum lipoferum | 30 | 1.5 | |
| ISPsy20 | IS21 | Pseudomonas syringae | 30 | 1.5 | |
| ISDsh1 | IS3 | IS51 | Dinoroseobacter shibae | 30 | 1.5 |
| IS1490 | IS256 | - | Burkholderia cepacia | 30 | 1.5 |
| IS1249 | IS256 | IS1249 | Corynebacterium xerosis | 30 | 1.5 |
| ISAsp8 | IS200/IS605 | IS1341 | Anabaena sp. | 28 | 5.8 |
| ISSso6 | IS110 | IS1111 | Shigella sonnei | 28 | 5.8 |
| ISHhu1 | IS200/IS605 | Halobacterium hubeiense | 28 | 5.8 | |
| ISSm4 | ISL3 | Serratia marcescens | 28 | 5.8 | |
| ISSiac5 | ISLre2 | Singulisphaera acidiphila | 28 | 5.8 | |
| ISXne1 | ISKra4 | ISAzba1 | Xenorhabdus nematophila | 28 | 5.8 |
| ISMoth2 | ISLre2 | Moorella thermoacetica | 28 | 5.8 | |
| ISAmde4 | ISLre2 | Ammonifex degensii | 28 | 5.8 | |
| ISAmde2 | ISLre2 | Ammonifex degensii | 28 | 5.8 | |
| ISKpn18 | IS3 | IS3 | Klebsiella pneumoniae | 28 | 5.8 |
| ISMesi1 | IS3 | IS150 | Meiothermus silvanus | 28 | 5.8 |
| ISBdo1 | IS1182 | Burkholderia dolosa | 28 | 5.8 | |
| ISMno31 | IS3 | IS150 | Methylobacterium nodulans | 28 | 5.8 |
| ISMch3 | IS3 | IS150 | Methylobacterium chloromethanicum | 28 | 5.8 |
| ISSyth1 | IS1182 | Symbiobacterium thermophilum | 28 | 5.8 | |
| ISMdi14 | IS110 | IS1111 | Methylobacterium dichloromethanicum | 28 | 5.8 |
| ISMex37 | IS3 | IS150 | Methylobacterium extorquens | 28 | 5.8 |
| ISMex16 | IS3 | IS150 | Methylobacterium extorquens | 28 | 5.8 |
| ISMex29 | IS110 | IS1111 | Methylobacterium extorquens | 28 | 5.8 |
| ISCARN98 | IS1380 | Metagenomic data from CARNOULES | 28 | 5.8 | |
| ISVei5 | IS5 | IS5 | Verminephrobacter eiseniae | 28 | 5.8 |
| ISSlo2 | IS3 | IS3 | Shewanella loihica | 28 | 5.8 |
| ISGdi8 | IS256 | Gluconacetobacter diazotrophicus | 28 | 5.8 | |
| ISGdi1 | IS5 | IS1031 | Gluconacetobacter diazotrophicus | 28 | 5.8 |
| ISMul1 | ISAs1 | Mycobacterium ulcerans | 28 | 5.8 | |
| IS1595 | IS1595 | IS1595 | Xanthomonas campestris | 28 | 5.8 |
| IS885 | IS630 | Ralstonia eutropha | 28 | 5.8 | |
| ISCc3 | IS3 | IS150 | Caulobacter crescentus | 28 | 5.8 |
| ISHsp2 | IS630 | Halomonas sp. | 28 | 5.8 | |
| ISRm9 | IS21 | - | Rhizobium meliloti | 28 | 5.8 |
| IS2404 | ISAs1 | - | Mycobacterium ulcerans | 28 | 5.8 |
>ISAzs7
Length = 1455
Score = 38.2 bits (19), Expect = 0.006
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 152 ccgcgcggccagacgctcg 170
|||||||||||||||||||
Sbjct: 157 ccgcgcggccagacgctcg 139
>ISAzs25
Length = 1614
Score = 32.2 bits (16), Expect = 0.37
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 157 cggccagacgctcggc 172
||||||||||||||||
Sbjct: 259 cggccagacgctcggc 244
>ISXoo5
Length = 1607
Score = 32.2 bits (16), Expect = 0.37
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 169 cggcggctacgcccat 184
||||||||||||||||
Sbjct: 778 cggcggctacgcccat 793
>ISGob1
Length = 1575
Score = 32.2 bits (16), Expect = 0.37
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 248 gtcgccgaacagttgg 263
||||||||||||||||
Sbjct: 663 gtcgccgaacagttgg 648
>ISCur2
Length = 1384
Score = 30.2 bits (15), Expect = 1.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 264 tcgacaccgactaca 278
|||||||||||||||
Sbjct: 1290 tcgacaccgactaca 1304
>IS3507
Length = 1388
Score = 30.2 bits (15), Expect = 1.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 264 tcgacaccgactaca 278
|||||||||||||||
Sbjct: 1292 tcgacaccgactaca 1306
>ISXoo14
Length = 1310
Score = 30.2 bits (15), Expect = 1.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 194 cgcttcacgctcggc 208
|||||||||||||||
Sbjct: 773 cgcttcacgctcggc 759
>ISPfr21
Length = 2632
Score = 30.2 bits (15), Expect = 1.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 167 ctcggcggctacgcc 181
|||||||||||||||
Sbjct: 1366 ctcggcggctacgcc 1380
>ISMex33
Length = 1318
Score = 30.2 bits (15), Expect = 1.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 198 tcacgctcggctcgg 212
|||||||||||||||
Sbjct: 872 tcacgctcggctcgg 886
>ISAli6
Length = 1437
Score = 30.2 bits (15), Expect = 1.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 161 cagacgctcggcggc 175
|||||||||||||||
Sbjct: 262 cagacgctcggcggc 248
>ISPsy20
Length = 2572
Score = 30.2 bits (15), Expect = 1.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 183 atcgcgcggtgcgct 197
|||||||||||||||
Sbjct: 1750 atcgcgcggtgcgct 1764
>ISDsh1
Length = 1326
Score = 30.2 bits (15), Expect = 1.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 157 cggccagacgctcgg 171
|||||||||||||||
Sbjct: 1024 cggccagacgctcgg 1010
>IS1490
Length = 1433
Score = 30.2 bits (15), Expect = 1.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 222 tgctcaacgcgatgc 236
|||||||||||||||
Sbjct: 929 tgctcaacgcgatgc 943
>IS1249
Length = 1385
Score = 30.2 bits (15), Expect = 1.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 264 tcgacaccgactaca 278
|||||||||||||||
Sbjct: 1291 tcgacaccgactaca 1305
>ISAsp8
Length = 1353
Score = 28.2 bits (14), Expect = 5.8
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 225 tcaacgcgatgctcaatg 242
|||| |||||||||||||
Sbjct: 916 tcaatgcgatgctcaatg 899
>ISSso6
Length = 1518
Score = 28.2 bits (14), Expect = 5.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 281 gcccagcacaccga 294
||||||||||||||
Sbjct: 625 gcccagcacaccga 638
>ISHhu1
Length = 1835
Score = 28.2 bits (14), Expect = 5.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 31 ggaggcgttcgtgg 44
||||||||||||||
Sbjct: 945 ggaggcgttcgtgg 932
>ISSm4
Length = 9109
Score = 28.2 bits (14), Expect = 5.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 272 gactacatcgccca 285
||||||||||||||
Sbjct: 439 gactacatcgccca 452
>ISSiac5
Length = 1429
Score = 28.2 bits (14), Expect = 5.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 246 tcgtcgccgaacag 259
||||||||||||||
Sbjct: 1047 tcgtcgccgaacag 1034
>ISXne1
Length = 2277
Score = 28.2 bits (14), Expect = 5.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 221 ttgctcaacgcgat 234
||||||||||||||
Sbjct: 495 ttgctcaacgcgat 508
>ISMoth2
Length = 1721
Score = 28.2 bits (14), Expect = 5.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 172 cggctacgcccatc 185
||||||||||||||
Sbjct: 1216 cggctacgcccatc 1203
>ISAmde4
Length = 1584
Score = 28.2 bits (14), Expect = 5.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 4 ctggggagcgggca 17
||||||||||||||
Sbjct: 416 ctggggagcgggca 429
>ISAmde2
Length = 1584
Score = 28.2 bits (14), Expect = 5.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 4 ctggggagcgggca 17
||||||||||||||
Sbjct: 416 ctggggagcgggca 429
>ISKpn18
Length = 1303
Score = 28.2 bits (14), Expect = 5.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 268 caccgactacatcg 281
||||||||||||||
Sbjct: 1139 caccgactacatcg 1152
>ISMesi1
Length = 1234
Score = 28.2 bits (14), Expect = 5.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 29 gtggaggcgttcgt 42
||||||||||||||
Sbjct: 1078 gtggaggcgttcgt 1091
>ISBdo1
Length = 1572
Score = 28.2 bits (14), Expect = 5.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 163 gacgctcggcggct 176
||||||||||||||
Sbjct: 1206 gacgctcggcggct 1219
>ISMno31
Length = 1510
Score = 28.2 bits (14), Expect = 5.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 188 gcggtgcgcttcac 201
||||||||||||||
Sbjct: 720 gcggtgcgcttcac 733
>ISMch3
Length = 1510
Score = 28.2 bits (14), Expect = 5.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 188 gcggtgcgcttcac 201
||||||||||||||
Sbjct: 720 gcggtgcgcttcac 733
>ISSyth1
Length = 1527
Score = 28.2 bits (14), Expect = 5.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 127 cggcaccaagatca 140
||||||||||||||
Sbjct: 491 cggcaccaagatca 504
>ISMdi14
Length = 1316
Score = 28.2 bits (14), Expect = 5.8
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 206 ggctcggatgtctccttg 223
|||| |||||||||||||
Sbjct: 89 ggcttggatgtctccttg 106
>ISMex37
Length = 1510
Score = 28.2 bits (14), Expect = 5.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 188 gcggtgcgcttcac 201
||||||||||||||
Sbjct: 721 gcggtgcgcttcac 734
>ISMex16
Length = 1511
Score = 28.2 bits (14), Expect = 5.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 188 gcggtgcgcttcac 201
||||||||||||||
Sbjct: 721 gcggtgcgcttcac 734
>ISMex29
Length = 1339
Score = 28.2 bits (14), Expect = 5.8
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 257 cagttggtcgacaccgac 274
||||||||||| ||||||
Sbjct: 625 cagttggtcgataccgac 642
>ISCARN98
Length = 1685
Score = 28.2 bits (14), Expect = 5.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 249 tcgccgaacagttg 262
||||||||||||||
Sbjct: 1010 tcgccgaacagttg 997
>ISVei5
Length = 1620
Score = 28.2 bits (14), Expect = 5.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 170 ggcggctacgccca 183
||||||||||||||
Sbjct: 783 ggcggctacgccca 796
>ISSlo2
Length = 1257
Score = 28.2 bits (14), Expect = 5.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 176 tacgcccatcgcgc 189
||||||||||||||
Sbjct: 182 tacgcccatcgcgc 169
>ISGdi8
Length = 1356
Score = 28.2 bits (14), Expect = 5.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 178 cgcccatcgcgcgg 191
||||||||||||||
Sbjct: 474 cgcccatcgcgcgg 461
>ISGdi1
Length = 930
Score = 28.2 bits (14), Expect = 5.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 225 tcaacgcgatgctc 238
||||||||||||||
Sbjct: 231 tcaacgcgatgctc 244
>ISMul1
Length = 1366
Score = 28.2 bits (14), Expect = 5.8
Identities = 21/22 (95%), Gaps = 1/22 (4%)
Strand = Plus / Minus
Query: 123 agcgcggcacc-aagatcatca 143
||||||||||| ||||||||||
Sbjct: 64 agcgcggcaccaaagatcatca 43
>IS1595
Length = 1072
Score = 28.2 bits (14), Expect = 5.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 195 gcttcacgctcggc 208
||||||||||||||
Sbjct: 492 gcttcacgctcggc 479
>IS885
Length = 1100
Score = 28.2 bits (14), Expect = 5.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 152 ccgcgcggccagac 165
||||||||||||||
Sbjct: 618 ccgcgcggccagac 631
>ISCc3
Length = 1514
Score = 28.2 bits (14), Expect = 5.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 188 gcggtgcgcttcac 201
||||||||||||||
Sbjct: 724 gcggtgcgcttcac 737
>ISHsp2
Length = 1078
Score = 28.2 bits (14), Expect = 5.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 246 tcgtcgccgaacag 259
||||||||||||||
Sbjct: 349 tcgtcgccgaacag 362
>ISRm9
Length = 2798
Score = 28.2 bits (14), Expect = 5.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 183 atcgcgcggtgcgc 196
||||||||||||||
Sbjct: 784 atcgcgcggtgcgc 771
>IS2404
Length = 1279
Score = 28.2 bits (14), Expect = 5.8
Identities = 21/22 (95%), Gaps = 1/22 (4%)
Strand = Plus / Minus
Query: 123 agcgcggcacc-aagatcatca 143
||||||||||| ||||||||||
Sbjct: 1251 agcgcggcaccaaagatcatca 1230
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_118_length_293_cov_0.981481_ID_5406
(293 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISPsy24 | IS3 | IS3 | Pseudomonas syringae | 32 | 0.37 |
| ISSpn7 | IS5 | ISL2 | Streptococcus pneumoniae | 30 | 1.5 |
| ISApr2 | IS1595 | ISSod11 | Alpha proteobacterium | 30 | 1.5 |
| ISMaq2 | IS3 | IS2 | Marinobacter aquaeolei | 30 | 1.5 |
| ISHli10 | IS630 | Halohasta litchfieldiae | 28 | 5.8 | |
| ISThio1 | ISKra4 | ISKra4 | Thiorhodovibrio sp. | 28 | 5.8 |
| ISMal1 | ISKra4 | ISAzba1 | Mesorhizobium alhagi | 28 | 5.8 |
| ISMfu1 | ISAzo13 | Myxococcus fulvus | 28 | 5.8 | |
| ISRhosp9 | IS5 | ISL2 | Rhodococcus sp. | 28 | 5.8 |
| ISSis4 | ISNCY | ISC1217 | Sulfolobus islandicus | 28 | 5.8 |
| ISPkr1 | IS21 | Paracoccus koreensis | 28 | 5.8 | |
| ISPph2 | IS630 | Pelodictyon phaeoclathratiforme | 28 | 5.8 | |
| ISLsp4 | ISAzo13 | Leptospirillum sp. | 28 | 5.8 | |
| ISPfr18 | ISL3 | Propionibacterium freudenreichii | 28 | 5.8 | |
| ISMasp5 | IS66 | ISBst12 | Magnetococcus sp. | 28 | 5.8 |
| ISCysp3 | IS66 | ISBst12 | Cyanothece sp. | 28 | 5.8 |
| ISXca1 | IS3 | IS407 | Xanthomonas campestris | 28 | 5.8 |
| KIS | ISNCY | - | Lactobacillus delbrueckii | 28 | 5.8 |
| ISMav2 | IS481 | - | Mycobacterium avium | 28 | 5.8 |
| IS240F | IS6 | - | Bacillus thuringiensis | 28 | 5.8 |
>ISPsy24
Length = 1235
Score = 32.2 bits (16), Expect = 0.37
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 265 ggtgtccggtttcatt 280
||||||||||||||||
Sbjct: 27 ggtgtccggtttcatt 12
>ISSpn7
Length = 856
Score = 30.2 bits (15), Expect = 1.5
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 196 aaagcttgtaaccatgcgc 214
||||| |||||||||||||
Sbjct: 674 aaagcctgtaaccatgcgc 692
>ISApr2
Length = 1029
Score = 30.2 bits (15), Expect = 1.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 147 tcggtgacggccggc 161
|||||||||||||||
Sbjct: 289 tcggtgacggccggc 303
>ISMaq2
Length = 1319
Score = 30.2 bits (15), Expect = 1.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 262 ggtggtgtccggttt 276
|||||||||||||||
Sbjct: 1289 ggtggtgtccggttt 1303
>ISHli10
Length = 1055
Score = 28.2 bits (14), Expect = 5.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 146 ttcggtgacggccg 159
||||||||||||||
Sbjct: 851 ttcggtgacggccg 838
>ISThio1
Length = 1756
Score = 28.2 bits (14), Expect = 5.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 207 ccatgcgccgcgac 220
||||||||||||||
Sbjct: 1051 ccatgcgccgcgac 1064
>ISMal1
Length = 2308
Score = 28.2 bits (14), Expect = 5.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 105 ttcggcgcaagggc 118
||||||||||||||
Sbjct: 1087 ttcggcgcaagggc 1100
>ISMfu1
Length = 1293
Score = 28.2 bits (14), Expect = 5.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 107 cggcgcaagggcgc 120
||||||||||||||
Sbjct: 283 cggcgcaagggcgc 296
>ISRhosp9
Length = 944
Score = 28.2 bits (14), Expect = 5.8
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 244 gctgcgcacgcccctgac 261
||||| ||||||||||||
Sbjct: 378 gctgcccacgcccctgac 395
>ISSis4
Length = 1205
Score = 28.2 bits (14), Expect = 5.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 57 actacctcgaggcg 70
||||||||||||||
Sbjct: 318 actacctcgaggcg 331
>ISPkr1
Length = 2469
Score = 28.2 bits (14), Expect = 5.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 15 gggcgccgattacc 28
||||||||||||||
Sbjct: 48 gggcgccgattacc 35
>ISPph2
Length = 1216
Score = 28.2 bits (14), Expect = 5.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 160 gcggatggtgattt 173
||||||||||||||
Sbjct: 355 gcggatggtgattt 368
>ISLsp4
Length = 1295
Score = 28.2 bits (14), Expect = 5.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 30 atctcgtccgccag 43
||||||||||||||
Sbjct: 963 atctcgtccgccag 950
>ISPfr18
Length = 1437
Score = 28.2 bits (14), Expect = 5.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 157 ccggcggatggtga 170
||||||||||||||
Sbjct: 102 ccggcggatggtga 89
>ISMasp5
Length = 1967
Score = 28.2 bits (14), Expect = 5.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 39 gccagcccgacttc 52
||||||||||||||
Sbjct: 1184 gccagcccgacttc 1171
>ISCysp3
Length = 1522
Score = 28.2 bits (14), Expect = 5.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 194 gaaaagcttgtaac 207
||||||||||||||
Sbjct: 594 gaaaagcttgtaac 581
>ISXca1
Length = 1225
Score = 28.2 bits (14), Expect = 5.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 280 tgaaaccgtgctgg 293
||||||||||||||
Sbjct: 163 tgaaaccgtgctgg 150
>KIS
Length = 1543
Score = 28.2 bits (14), Expect = 5.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 163 gatggtgatttcac 176
||||||||||||||
Sbjct: 649 gatggtgatttcac 662
>ISMav2
Length = 1361
Score = 28.2 bits (14), Expect = 5.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 11 cgcggggcgccgat 24
||||||||||||||
Sbjct: 511 cgcggggcgccgat 524
>IS240F
Length = 806
Score = 28.2 bits (14), Expect = 5.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 277 cattgaaaccgtgc 290
||||||||||||||
Sbjct: 644 cattgaaaccgtgc 657
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_119_length_291_cov_1.21028_ID_5408
(291 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISSpu15 | IS21 | Shewanella putrefaciens | 34 | 0.093 | |
| ISApr10 | IS256 | Alpha proteobacterium | 32 | 0.37 | |
| ISHla22 | IS200/IS605 | IS1341 | Halorubrum lacusprofundi | 30 | 1.5 |
| ISMtsp9 | IS110 | Methylobacterium sp. | 30 | 1.5 | |
| ISEnfa364 | IS30 | Enterococcus faecalis | 30 | 1.5 | |
| ISHasp2 | IS200/IS605 | IS1341 | Halobacterium sp. | 28 | 5.7 |
| ISNpe29 | IS200/IS605 | IS1341 | Natrinema pellirubrum | 28 | 5.7 |
| ISPko7 | IS110 | IS1111 | Paracoccus kondratievae | 28 | 5.7 |
| ISHli13 | IS200/IS605 | IS1341 | Halohasta litchfieldiae | 28 | 5.7 |
| ISDku1 | IS256 | Desulfotomaculum kuznetsovii | 28 | 5.7 | |
| ISPfr6 | ISL3 | Propionibacterium freudenreichii | 28 | 5.7 | |
| ISAar42 | ISL3 | Arthrobacter arilaitensis | 28 | 5.7 | |
| ISMex35 | IS5 | IS5 | Methylobacterium extorquens | 28 | 5.7 |
| ISAeh1 | IS66 | Alkalilimnicola ehrlichei | 28 | 5.7 | |
| ISNha5 | IS1595 | ISNha5 | Nitrobacter hamburgensis | 28 | 5.7 |
| ISNwi4 | IS1595 | ISNha5 | Nitrobacter winogradskyi | 28 | 5.7 |
| ISPca1 | IS4 | IS4Sa | Pelobacter carbinolicus | 28 | 5.7 |
| ISFsp1 | ISL3 | Frankia sp. | 28 | 5.7 | |
| IS866 | IS66 | - | Agrobacterium tumefaciens | 28 | 5.7 |
| IS1206 | IS3 | IS51 | Corynebacterium glutamicum | 28 | 5.7 |
>ISSpu15
Length = 2420
Score = 34.2 bits (17), Expect = 0.093
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 133 ccggttcgcgtcaatta 149
|||||||||||||||||
Sbjct: 2398 ccggttcgcgtcaatta 2382
>ISApr10
Length = 1366
Score = 32.2 bits (16), Expect = 0.37
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 82 cgatgatgaacagtcg 97
||||||||||||||||
Sbjct: 756 cgatgatgaacagtcg 741
>ISHla22
Length = 1515
Score = 30.2 bits (15), Expect = 1.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 1 ctggcaactcgcgga 15
|||||||||||||||
Sbjct: 1118 ctggcaactcgcgga 1132
>ISMtsp9
Length = 1456
Score = 30.2 bits (15), Expect = 1.5
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 89 gaacagtcgctgggg 103
|||||||||||||||
Sbjct: 146 gaacagtcgctgggg 160
>ISEnfa364
Length = 1055
Score = 30.2 bits (15), Expect = 1.5
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 194 ttctcagcttcaagt 208
|||||||||||||||
Sbjct: 585 ttctcagcttcaagt 571
>ISHasp2
Length = 1671
Score = 28.2 bits (14), Expect = 5.7
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 237 tgctgtcttcgatccgca 254
||||||||||||| ||||
Sbjct: 616 tgctgtcttcgatacgca 599
>ISNpe29
Length = 1597
Score = 28.2 bits (14), Expect = 5.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 52 cgtgaccgcccttc 65
||||||||||||||
Sbjct: 727 cgtgaccgcccttc 714
>ISPko7
Length = 1140
Score = 28.2 bits (14), Expect = 5.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 4 gcaactcgcggatg 17
||||||||||||||
Sbjct: 435 gcaactcgcggatg 422
>ISHli13
Length = 1586
Score = 28.2 bits (14), Expect = 5.7
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 237 tgctgtcttcgatccgca 254
||||||||||||| ||||
Sbjct: 588 tgctgtcttcgattcgca 571
>ISDku1
Length = 1486
Score = 28.2 bits (14), Expect = 5.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 195 tctcagcttcaagt 208
||||||||||||||
Sbjct: 183 tctcagcttcaagt 170
>ISPfr6
Length = 1436
Score = 28.2 bits (14), Expect = 5.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 163 acgctaccttcgcg 176
||||||||||||||
Sbjct: 130 acgctaccttcgcg 143
>ISAar42
Length = 1443
Score = 28.2 bits (14), Expect = 5.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 162 cacgctaccttcgc 175
||||||||||||||
Sbjct: 127 cacgctaccttcgc 140
>ISMex35
Length = 1294
Score = 28.2 bits (14), Expect = 5.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 55 gaccgcccttcgac 68
||||||||||||||
Sbjct: 234 gaccgcccttcgac 247
>ISAeh1
Length = 2320
Score = 28.2 bits (14), Expect = 5.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 124 ccgggccggccggt 137
||||||||||||||
Sbjct: 266 ccgggccggccggt 253
>ISNha5
Length = 3904
Score = 28.2 bits (14), Expect = 5.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 32 cgtgaagcctgcaa 45
||||||||||||||
Sbjct: 1820 cgtgaagcctgcaa 1833
>ISNwi4
Length = 3671
Score = 28.2 bits (14), Expect = 5.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 32 cgtgaagcctgcaa 45
||||||||||||||
Sbjct: 1630 cgtgaagcctgcaa 1643
Score = 28.2 bits (14), Expect = 5.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 79 atacgatgatgaac 92
||||||||||||||
Sbjct: 1974 atacgatgatgaac 1961
>ISPca1
Length = 1251
Score = 28.2 bits (14), Expect = 5.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 265 gtcgatatgaccga 278
||||||||||||||
Sbjct: 592 gtcgatatgaccga 605
>ISFsp1
Length = 1732
Score = 28.2 bits (14), Expect = 5.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 131 ggccggttcgcgtc 144
||||||||||||||
Sbjct: 444 ggccggttcgcgtc 457
>IS866
Length = 2716
Score = 28.2 bits (14), Expect = 5.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 237 tgctgtcttcgatc 250
||||||||||||||
Sbjct: 2168 tgctgtcttcgatc 2155
>IS1206
Length = 1290
Score = 28.2 bits (14), Expect = 5.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 103 ggaagacctgttga 116
||||||||||||||
Sbjct: 443 ggaagacctgttga 430
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_120_length_289_cov_1.03302_ID_5410
(289 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| IS4811 | IS5 | IS1031 | Streptomyces lividans | 36 | 0.023 |
| ISAar39 | ISL3 | Arthrobacter arilaitensis | 34 | 0.092 | |
| ISMex35 | IS5 | IS5 | Methylobacterium extorquens | 34 | 0.092 |
| ISGbe1 | IS3 | IS407 | Granulibacter bethesdensis | 34 | 0.092 |
| ISBte1 | ISKra4 | ISAzba1 | Burkholderia terrae | 30 | 1.4 |
| ISPfr9 | IS30 | Propionibacterium freudenreichii | 30 | 1.4 | |
| ISStsp3 | IS1380 | Streptomyces sp. | 30 | 1.4 | |
| ISMex36 | IS1182 | Methylobacterium extorquens | 30 | 1.4 | |
| ISAau4 | Tn3 | Arthrobacter aurescens | 30 | 1.4 | |
| ISAba30 | IS200/IS605 | Acinetobacter baumannii | 28 | 5.7 | |
| ISKpn25 | ISL3 | Klebsiella pneumoniae | 28 | 5.7 | |
| ISFsp17 | ISKra4 | ISKra4 | Frankia sp. | 28 | 5.7 |
| ISMrh1 | IS256 | Mycobacterium rhodesiae | 28 | 5.7 | |
| ISPa43 | Tn3 | Pseudomonas aeruginosa | 28 | 5.7 | |
| ISMlo5 | ISNCY | ISDol1 | Mesorhizobium loti | 28 | 5.7 |
| ISDisp1 | IS5 | Diaphorobacter sp. | 28 | 5.7 | |
| ISMno14 | IS110 | IS1111 | Methylobacterium nodulans | 28 | 5.7 |
| ISMno13 | IS66 | Methylobacterium nodulans | 28 | 5.7 | |
| ISMdi14 | IS110 | IS1111 | Methylobacterium dichloromethanicum | 28 | 5.7 |
| ISMdi6 | IS1182 | Methylobacterium dichloromethanicum | 28 | 5.7 | |
| ISMex22 | Tn3 | Methylobacterium extorquens | 28 | 5.7 | |
| ISThsp9 | Tn3 | Thiomonas sp. | 28 | 5.7 | |
| ISCARN16 | IS21 | Metagenomic data from CARNOULES | 28 | 5.7 | |
| ISApr6 | IS66 | Alpha proteobacterium | 28 | 5.7 | |
| ISUnCu3 | IS21 | Uncultured bacterium | 28 | 5.7 | |
| ISDge3 | IS1 | Deinococcus geothermalis | 28 | 5.7 | |
| ISMsm4 | ISL3 | Mycobacterium smegmatis | 28 | 5.7 | |
| ISSsp4 | IS21 | Sphingomonas sp. | 28 | 5.7 | |
| ISRsp3 | IS21 | Rhizobium sp. | 28 | 5.7 | |
| ISLve2 | IS5 | IS903 | Loktanella vestfoldensis | 28 | 5.7 |
| ISCps9 | IS3 | IS3 | Colwellia psychrerythraea | 28 | 5.7 |
| ISTth2 | IS4 | IS10 | Thermus thermophilus | 28 | 5.7 |
| ISXc4 | Tn3 | - | Xanthomonas campestris | 28 | 5.7 |
| Tn3 | Tn3 | Salmonella wien | 28 | 5.7 | |
| ISRj2 | IS3 | IS150 | Bradyrhizobium japonicum | 28 | 5.7 |
| IS51 | IS3 | IS51 | Pseudomonas syringae | 28 | 5.7 |
>IS4811
Length = 5396
Score = 36.2 bits (18), Expect = 0.023
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 40 acgtcgtcgccctggccc 57
||||||||||||||||||
Sbjct: 4685 acgtcgtcgccctggccc 4668
>ISAar39
Length = 1433
Score = 34.2 bits (17), Expect = 0.092
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 40 acgtcgtcgccctggcc 56
|||||||||||||||||
Sbjct: 886 acgtcgtcgccctggcc 902
>ISMex35
Length = 1294
Score = 34.2 bits (17), Expect = 0.092
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 169 cggccggccgcaaggccgcct 189
||||| |||||||||||||||
Sbjct: 491 cggcccgccgcaaggccgcct 471
>ISGbe1
Length = 1269
Score = 34.2 bits (17), Expect = 0.092
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 47 cgccctggcccagcatg 63
|||||||||||||||||
Sbjct: 139 cgccctggcccagcatg 123
>ISBte1
Length = 2143
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 78 gtcgccacactgggc 92
|||||||||||||||
Sbjct: 1214 gtcgccacactgggc 1228
>ISPfr9
Length = 1484
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 171 gccggccgcaaggcc 185
|||||||||||||||
Sbjct: 132 gccggccgcaaggcc 118
>ISStsp3
Length = 1925
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 46 tcgccctggcccagc 60
|||||||||||||||
Sbjct: 791 tcgccctggcccagc 805
>ISMex36
Length = 1467
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 165 gacgcggccggccgc 179
|||||||||||||||
Sbjct: 1143 gacgcggccggccgc 1157
>ISAau4
Length = 3898
Score = 30.2 bits (15), Expect = 1.4
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 183 gccgcctggcgcgggctcg 201
||||||||||| |||||||
Sbjct: 1707 gccgcctggcgagggctcg 1725
>ISAba30
Length = 1770
Score = 28.2 bits (14), Expect = 5.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 156 ttcgacggcgacgc 169
||||||||||||||
Sbjct: 391 ttcgacggcgacgc 378
>ISKpn25
Length = 8154
Score = 28.2 bits (14), Expect = 5.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 71 caatgcggtcgcca 84
||||||||||||||
Sbjct: 706 caatgcggtcgcca 693
>ISFsp17
Length = 1693
Score = 28.2 bits (14), Expect = 5.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 20 cgtcgtcgagggct 33
||||||||||||||
Sbjct: 1459 cgtcgtcgagggct 1472
>ISMrh1
Length = 1472
Score = 28.2 bits (14), Expect = 5.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 43 tcgtcgccctggcc 56
||||||||||||||
Sbjct: 766 tcgtcgccctggcc 779
>ISPa43
Length = 19903
Score = 28.2 bits (14), Expect = 5.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 136 ccgaccgcgtggtg 149
||||||||||||||
Sbjct: 11895 ccgaccgcgtggtg 11908
Score = 28.2 bits (14), Expect = 5.7
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 115 ttcagaagctgtttcgtc 132
|||| |||||||||||||
Sbjct: 18660 ttcacaagctgtttcgtc 18677
>ISMlo5
Length = 1664
Score = 28.2 bits (14), Expect = 5.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 187 cctggcgcgggctc 200
||||||||||||||
Sbjct: 1381 cctggcgcgggctc 1394
>ISDisp1
Length = 1321
Score = 28.2 bits (14), Expect = 5.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 200 cgaggcggcactgg 213
||||||||||||||
Sbjct: 796 cgaggcggcactgg 809
>ISMno14
Length = 1428
Score = 28.2 bits (14), Expect = 5.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 131 tcatgccgaccgcg 144
||||||||||||||
Sbjct: 1336 tcatgccgaccgcg 1349
>ISMno13
Length = 2459
Score = 28.2 bits (14), Expect = 5.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 162 ggcgacgcggccgg 175
||||||||||||||
Sbjct: 540 ggcgacgcggccgg 553
>ISMdi14
Length = 1316
Score = 28.2 bits (14), Expect = 5.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 177 cgcaaggccgcctg 190
||||||||||||||
Sbjct: 1192 cgcaaggccgcctg 1179
>ISMdi6
Length = 1466
Score = 28.2 bits (14), Expect = 5.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 165 gacgcggccggccg 178
||||||||||||||
Sbjct: 1143 gacgcggccggccg 1156
>ISMex22
Length = 3864
Score = 28.2 bits (14), Expect = 5.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 44 cgtcgccctggccc 57
||||||||||||||
Sbjct: 2547 cgtcgccctggccc 2560
>ISThsp9
Length = 6215
Score = 28.2 bits (14), Expect = 5.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 13 cggtcatcgtcgtc 26
||||||||||||||
Sbjct: 1949 cggtcatcgtcgtc 1936
>ISCARN16
Length = 2594
Score = 28.2 bits (14), Expect = 5.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 133 atgccgaccgcgtg 146
||||||||||||||
Sbjct: 2536 atgccgaccgcgtg 2523
>ISApr6
Length = 2479
Score = 28.2 bits (14), Expect = 5.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 162 ggcgacgcggccgg 175
||||||||||||||
Sbjct: 525 ggcgacgcggccgg 538
>ISUnCu3
Length = 2596
Score = 28.2 bits (14), Expect = 5.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 98 cactaccgccacgc 111
||||||||||||||
Sbjct: 911 cactaccgccacgc 898
>ISDge3
Length = 748
Score = 28.2 bits (14), Expect = 5.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 7 gcaacacggtcatc 20
||||||||||||||
Sbjct: 249 gcaacacggtcatc 262
>ISMsm4
Length = 1458
Score = 28.2 bits (14), Expect = 5.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 173 cggccgcaaggccg 186
||||||||||||||
Sbjct: 960 cggccgcaaggccg 973
>ISSsp4
Length = 2558
Score = 28.2 bits (14), Expect = 5.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 35 catggacgtcgtcg 48
||||||||||||||
Sbjct: 1538 catggacgtcgtcg 1551
>ISRsp3
Length = 2489
Score = 28.2 bits (14), Expect = 5.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 56 ccagcatggcgtcc 69
||||||||||||||
Sbjct: 956 ccagcatggcgtcc 969
>ISLve2
Length = 1054
Score = 28.2 bits (14), Expect = 5.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 63 ggcgtccccaatgc 76
||||||||||||||
Sbjct: 586 ggcgtccccaatgc 573
>ISCps9
Length = 1279
Score = 28.2 bits (14), Expect = 5.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 37 tggacgtcgtcgcc 50
||||||||||||||
Sbjct: 495 tggacgtcgtcgcc 482
>ISTth2
Length = 1184
Score = 28.2 bits (14), Expect = 5.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 46 tcgccctggcccag 59
||||||||||||||
Sbjct: 1076 tcgccctggcccag 1089
>ISXc4
Length = 6938
Score = 28.2 bits (14), Expect = 5.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 13 cggtcatcgtcgtc 26
||||||||||||||
Sbjct: 1951 cggtcatcgtcgtc 1938
>Tn3
Length = 4948
Score = 28.2 bits (14), Expect = 5.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 56 ccagcatggcgtcc 69
||||||||||||||
Sbjct: 2822 ccagcatggcgtcc 2809
>ISRj2
Length = 1364
Score = 28.2 bits (14), Expect = 5.7
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 178 gcaaggccgcctggcgcg 195
|||||| |||||||||||
Sbjct: 998 gcaagggcgcctggcgcg 1015
>IS51
Length = 1311
Score = 28.2 bits (14), Expect = 5.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 210 ctggaaaccctgaa 223
||||||||||||||
Sbjct: 1145 ctggaaaccctgaa 1158
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_121_length_289_cov_0.891509_ID_5412
(289 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISSna1 | ISNCY | ISDol1 | Streptomyces natalensis | 34 | 0.092 |
| ISTeha1 | ISLre2 | Tetragenococcus halophilus | 34 | 0.092 | |
| IS3000 | Tn3 | - | Escherichia coli | 34 | 0.092 |
| ISSlgl1 | IS256 | IS1249 | Slackia heliotrinireducens | 30 | 1.4 |
| ISApr14 | IS256 | alpha proteobacterium | 30 | 1.4 | |
| ISPa38 | Tn3 | Pseudomonas aeruginosa | 30 | 1.4 | |
| ISUnCu14 | IS66 | Uncultured bacterium | 30 | 1.4 | |
| ISMae39 | IS30 | Microcystis aeruginosa | 30 | 1.4 | |
| ISGvi6 | IS1182 | Gloeobacter violaceus | 30 | 1.4 | |
| ISButh4 | IS5 | IS5 | Burkholderia thailandensis | 30 | 1.4 |
| ISAar19 | ISL3 | Arthrobacter arilaitensis | 30 | 1.4 | |
| ISGebe1 | IS481 | Geobacter bemidjiensis | 30 | 1.4 | |
| ISC1205 | ISNCY | ISC1217 | Sulfolobus sp. | 30 | 1.4 |
| ISPsy14 | IS21 | Pseudomonas syringae | 30 | 1.4 | |
| ISHasp2 | IS200/IS605 | IS1341 | Halobacterium sp. | 28 | 5.7 |
| ISAs18 | IS4 | IS10 | Aeromonas salmonicida | 28 | 5.7 |
| ISDsu1 | ISLre2 | Dialister succinatiphilus | 28 | 5.7 | |
| ISStma16 | IS5 | IS1031 | Stenotrophomonas maltophilia | 28 | 5.7 |
| ISEc37 | IS91 | Escherichia coli | 28 | 5.7 | |
| ISAzba9 | ISL3 | Azospirillum brasilense | 28 | 5.7 | |
| ISAzs18 | IS66 | Azospirillum sp. | 28 | 5.7 | |
| ISMch6 | IS110 | Methylobacterium chloromethanicum | 28 | 5.7 | |
| ISAar20 | ISL3 | Arthrobacter arilaitensis | 28 | 5.7 | |
| ISMex22 | Tn3 | Methylobacterium extorquens | 28 | 5.7 | |
| ISAzo36 | IS5 | IS1031 | Azoarcus sp. | 28 | 5.7 |
| ISAzo14 | IS1634 | Azoarcus sp. | 28 | 5.7 | |
| ISAli8 | IS110 | Azospirillum lipoferum | 28 | 5.7 | |
| ISAli7 | IS256 | Azospirillum lipoferum | 28 | 5.7 | |
| ISBcen28 | IS21 | Burkholderia cenocepacia | 28 | 5.7 | |
| ISPepr5 | IS21 | Pelobacter propionicus | 28 | 5.7 | |
| ISNieu4 | IS5 | IS1031 | Nitrosomonas eutropha | 28 | 5.7 |
| ISSod24 | IS3 | IS3 | Shewanella oneidensis | 28 | 5.7 |
| ISXo18 | IS3 | IS407 | Xanthomonas oryzae | 28 | 5.7 |
| ISXo17 | IS3 | IS407 | Xanthomonas oryzae | 28 | 5.7 |
| ISBfun4 | IS701 | Burkholderia xenovorans | 28 | 5.7 | |
| ISHch2 | IS4 | IS4 | Hahella chejuensis | 28 | 5.7 |
| ISGka3 | IS4 | IS231 | Geobacillus kaustophilus | 28 | 5.7 |
| ISXo2 | IS1595 | IS1595 | Xanthomomas oryzae | 28 | 5.7 |
| IS640 | IS21 | - | Shigella sonnei | 28 | 5.7 |
| IS21 | IS21 | - | Pseudomonas aeruginosa | 28 | 5.7 |
| IS1415 | IS21 | - | Rhodococcus erythropolis | 28 | 5.7 |
| IS1404 | IS3 | IS407 | Xanthomonas campestris | 28 | 5.7 |
| IS1403 | IS3 | IS407 | Xanthomonas campestris | 28 | 5.7 |
| IS1355 | IS5 | IS1031 | Methylobacterium dichloromethanicum | 28 | 5.7 |
>ISSna1
Length = 1560
Score = 34.2 bits (17), Expect = 0.092
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 36 ggtctgctccagcaggc 52
|||||||||||||||||
Sbjct: 927 ggtctgctccagcaggc 911
>ISTeha1
Length = 1641
Score = 34.2 bits (17), Expect = 0.092
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 118 tcatcaaacaccgcttt 134
|||||||||||||||||
Sbjct: 883 tcatcaaacaccgcttt 867
>IS3000
Length = 3235
Score = 34.2 bits (17), Expect = 0.092
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 17 ccgctttcacctccgcc 33
|||||||||||||||||
Sbjct: 207 ccgctttcacctccgcc 223
>ISSlgl1
Length = 1341
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 47 gcaggccggcgtcga 61
|||||||||||||||
Sbjct: 737 gcaggccggcgtcga 751
>ISApr14
Length = 1316
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 23 tcacctccgcccagg 37
|||||||||||||||
Sbjct: 1018 tcacctccgcccagg 1004
>ISPa38
Length = 6455
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 85 ttgatgaactcggtc 99
|||||||||||||||
Sbjct: 4771 ttgatgaactcggtc 4757
>ISUnCu14
Length = 2442
Score = 30.2 bits (15), Expect = 1.4
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 242 cggggccgacagcgcgcgc 260
|||| ||||||||||||||
Sbjct: 463 cgggcccgacagcgcgcgc 445
>ISMae39
Length = 1092
Score = 30.2 bits (15), Expect = 1.4
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 107 tggcgcggatgtcatcaaa 125
|||| ||||||||||||||
Sbjct: 189 tggctcggatgtcatcaaa 207
>ISGvi6
Length = 1662
Score = 30.2 bits (15), Expect = 1.4
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 246 gccgacagcgcgcgcccgg 264
|||||||||||||| ||||
Sbjct: 1347 gccgacagcgcgcggccgg 1329
>ISButh4
Length = 1483
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 49 aggccggcgtcgaag 63
|||||||||||||||
Sbjct: 472 aggccggcgtcgaag 486
>ISAar19
Length = 1449
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 117 gtcatcaaacaccgc 131
|||||||||||||||
Sbjct: 364 gtcatcaaacaccgc 378
>ISGebe1
Length = 1269
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 52 ccggcgtcgaaggcc 66
|||||||||||||||
Sbjct: 237 ccggcgtcgaaggcc 251
>ISC1205
Length = 1205
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 85 ttgatgaactcggtc 99
|||||||||||||||
Sbjct: 135 ttgatgaactcggtc 121
>ISPsy14
Length = 2597
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 48 caggccggcgtcgaa 62
|||||||||||||||
Sbjct: 250 caggccggcgtcgaa 236
>ISHasp2
Length = 1671
Score = 28.2 bits (14), Expect = 5.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 118 tcatcaaacaccgc 131
||||||||||||||
Sbjct: 782 tcatcaaacaccgc 795
>ISAs18
Length = 1261
Score = 28.2 bits (14), Expect = 5.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 228 aacacgcttggcat 241
||||||||||||||
Sbjct: 163 aacacgcttggcat 150
>ISDsu1
Length = 1655
Score = 28.2 bits (14), Expect = 5.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 207 cgcagaagcgtaaa 220
||||||||||||||
Sbjct: 1470 cgcagaagcgtaaa 1483
>ISStma16
Length = 846
Score = 28.2 bits (14), Expect = 5.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 39 ctgctccagcaggc 52
||||||||||||||
Sbjct: 297 ctgctccagcaggc 284
>ISEc37
Length = 1828
Score = 28.2 bits (14), Expect = 5.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 68 ggtagcgccacatg 81
||||||||||||||
Sbjct: 1027 ggtagcgccacatg 1014
>ISAzba9
Length = 1847
Score = 28.2 bits (14), Expect = 5.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 153 cagatcagcggcgg 166
||||||||||||||
Sbjct: 1529 cagatcagcggcgg 1516
>ISAzs18
Length = 2633
Score = 28.2 bits (14), Expect = 5.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 270 tagactccggccat 283
||||||||||||||
Sbjct: 955 tagactccggccat 968
>ISMch6
Length = 1379
Score = 28.2 bits (14), Expect = 5.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 42 ctccagcaggccgg 55
||||||||||||||
Sbjct: 515 ctccagcaggccgg 528
>ISAar20
Length = 1449
Score = 28.2 bits (14), Expect = 5.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 117 gtcatcaaacaccg 130
||||||||||||||
Sbjct: 364 gtcatcaaacaccg 377
>ISMex22
Length = 3864
Score = 28.2 bits (14), Expect = 5.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 48 caggccggcgtcga 61
||||||||||||||
Sbjct: 3285 caggccggcgtcga 3272
>ISAzo36
Length = 817
Score = 28.2 bits (14), Expect = 5.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 39 ctgctccagcaggc 52
||||||||||||||
Sbjct: 293 ctgctccagcaggc 280
>ISAzo14
Length = 1925
Score = 28.2 bits (14), Expect = 5.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 44 ccagcaggccggcg 57
||||||||||||||
Sbjct: 754 ccagcaggccggcg 767
>ISAli8
Length = 1151
Score = 28.2 bits (14), Expect = 5.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 48 caggccggcgtcga 61
||||||||||||||
Sbjct: 499 caggccggcgtcga 486
>ISAli7
Length = 1416
Score = 28.2 bits (14), Expect = 5.7
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 51 gccggcgtcgaaggccag 68
|||| |||||||||||||
Sbjct: 256 gccgacgtcgaaggccag 273
>ISBcen28
Length = 2311
Score = 28.2 bits (14), Expect = 5.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 256 cgcgcccggcctgc 269
||||||||||||||
Sbjct: 541 cgcgcccggcctgc 554
>ISPepr5
Length = 2193
Score = 28.2 bits (14), Expect = 5.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 11 ccatcaccgctttc 24
||||||||||||||
Sbjct: 1616 ccatcaccgctttc 1603
>ISNieu4
Length = 842
Score = 28.2 bits (14), Expect = 5.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 39 ctgctccagcaggc 52
||||||||||||||
Sbjct: 293 ctgctccagcaggc 280
>ISSod24
Length = 1034
Score = 28.2 bits (14), Expect = 5.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 38 tctgctccagcagg 51
||||||||||||||
Sbjct: 511 tctgctccagcagg 498
>ISXo18
Length = 1189
Score = 28.2 bits (14), Expect = 5.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 232 cgcttggcatcggg 245
||||||||||||||
Sbjct: 222 cgcttggcatcggg 209
>ISXo17
Length = 1192
Score = 28.2 bits (14), Expect = 5.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 232 cgcttggcatcggg 245
||||||||||||||
Sbjct: 223 cgcttggcatcggg 210
>ISBfun4
Length = 1464
Score = 28.2 bits (14), Expect = 5.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 45 cagcaggccggcgt 58
||||||||||||||
Sbjct: 547 cagcaggccggcgt 560
>ISHch2
Length = 1633
Score = 28.2 bits (14), Expect = 5.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 48 caggccggcgtcga 61
||||||||||||||
Sbjct: 861 caggccggcgtcga 874
>ISGka3
Length = 1605
Score = 28.2 bits (14), Expect = 5.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 121 tcaaacaccgcttt 134
||||||||||||||
Sbjct: 395 tcaaacaccgcttt 382
>ISXo2
Length = 1070
Score = 28.2 bits (14), Expect = 5.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 63 ggccaggtagcgcc 76
||||||||||||||
Sbjct: 923 ggccaggtagcgcc 910
>IS640
Length = 2130
Score = 28.2 bits (14), Expect = 5.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 126 caccgctttcacgc 139
||||||||||||||
Sbjct: 1639 caccgctttcacgc 1626
>IS21
Length = 2131
Score = 28.2 bits (14), Expect = 5.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 126 caccgctttcacgc 139
||||||||||||||
Sbjct: 1639 caccgctttcacgc 1626
>IS1415
Length = 2580
Score = 28.2 bits (14), Expect = 5.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 109 gcgcggatgtcatc 122
||||||||||||||
Sbjct: 360 gcgcggatgtcatc 373
>IS1404
Length = 1203
Score = 28.2 bits (14), Expect = 5.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 232 cgcttggcatcggg 245
||||||||||||||
Sbjct: 229 cgcttggcatcggg 216
>IS1403
Length = 1203
Score = 28.2 bits (14), Expect = 5.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 232 cgcttggcatcggg 245
||||||||||||||
Sbjct: 229 cgcttggcatcggg 216
>IS1355
Length = 970
Score = 28.2 bits (14), Expect = 5.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 162 ggcgggggcaagcg 175
||||||||||||||
Sbjct: 174 ggcgggggcaagcg 187
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_122_length_289_cov_0.882075_ID_5414
(289 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISThsp5 | IS21 | Thiomonas sp. | 34 | 0.092 | |
| ISCARN54 | IS3 | IS3 | Metagenomic data from CARNOULES | 32 | 0.36 |
| ISNaoc8 | IS200/IS605 | IS1341 | Natronococcus occultus | 30 | 1.4 |
| ISOan8 | IS256 | Octadecabacter antarcticus | 30 | 1.4 | |
| ISOan5 | IS256 | Octadecabacter antarcticus | 30 | 1.4 | |
| ISRel9 | IS110 | IS1111 | Rhizobium etli | 30 | 1.4 |
| ISSgr2 | IS5 | ISL2 | Streptomyces griseus | 30 | 1.4 |
| ISArsp6 | Tn3 | Arthrobacter sp. | 30 | 1.4 | |
| ISArsp4 | IS256 | Arthrobacter sp. | 30 | 1.4 | |
| ISApu1 | IS4 | ISH8 | Aeromonas punctata | 30 | 1.4 |
| ISCc2 | IS110 | Caulobacter crescentus | 30 | 1.4 | |
| ISRso13 | IS4 | IS4 | Ralstonia solanacearum | 30 | 1.4 |
| IS1632 | IS256 | - | Bradyrhizobium japonicum | 30 | 1.4 |
| ISXci1 | IS21 | Xanthomonas citri | 28 | 5.7 | |
| ISAs28 | IS21 | Aeromonas salmonicida | 28 | 5.7 | |
| ISIde1 | ISL3 | Ideonella dechloratans | 28 | 5.7 | |
| ISSal1 | IS66 | Shewanella algae | 28 | 5.7 | |
| ISMau1 | IS5 | ISL2 | Micromonospora aurantiaca | 28 | 5.7 |
| ISBdo1 | IS1182 | Burkholderia dolosa | 28 | 5.7 | |
| ISRop2 | ISAzo13 | Rhodococcus opacus | 28 | 5.7 | |
| ISMno5 | ISL3 | Methylobacterium nodulans | 28 | 5.7 | |
| ISAar6 | IS256 | Arthrobacter arilaitensis | 28 | 5.7 | |
| ISMex26 | ISL3 | Methylobacterium extorquens | 28 | 5.7 | |
| ISMex24 | ISL3 | Methylobacterium extorquens | 28 | 5.7 | |
| ISMdi1 | IS630 | Methylobacterium dichloromethanicum | 28 | 5.7 | |
| ISStma13 | IS3 | IS407 | Stenotrophomonas maltophilia | 28 | 5.7 |
| ISAzo26 | IS91 | Azoarcus sp. | 28 | 5.7 | |
| ISApr7 | IS1595 | ISNwi1 | Alpha proteobacterium | 28 | 5.7 |
| ISAfe4 | IS66 | Acidithiobacillus ferrooxidans | 28 | 5.7 | |
| ISCro3 | IS4 | Citrobacter rodentium | 28 | 5.7 | |
| ISPa25 | IS110 | IS1111 | Pseudomonas aeruginosa | 28 | 5.7 |
| ISGvi2 | IS4 | IS50 | Gloeobacter violaceus | 28 | 5.7 |
| ISRm14 | IS66 | - | Sinorhizobium meliloti | 28 | 5.7 |
>ISThsp5
Length = 2652
Score = 34.2 bits (17), Expect = 0.092
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 259 cctcgaaaagtgggtca 275
|||||||||||||||||
Sbjct: 37 cctcgaaaagtgggtca 21
>ISCARN54
Length = 1624
Score = 32.2 bits (16), Expect = 0.36
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 45 gagcagcaaggcgccg 60
||||||||||||||||
Sbjct: 1080 gagcagcaaggcgccg 1095
>ISNaoc8
Length = 1584
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 203 cagggcaagcgcgtg 217
|||||||||||||||
Sbjct: 428 cagggcaagcgcgtg 442
>ISOan8
Length = 1387
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 191 acgccgtcagcccag 205
|||||||||||||||
Sbjct: 633 acgccgtcagcccag 619
>ISOan5
Length = 1387
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 191 acgccgtcagcccag 205
|||||||||||||||
Sbjct: 633 acgccgtcagcccag 619
>ISRel9
Length = 1553
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 138 cggccgccgctctgg 152
|||||||||||||||
Sbjct: 20 cggccgccgctctgg 34
>ISSgr2
Length = 873
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 160 ggcgacggccgggcc 174
|||||||||||||||
Sbjct: 440 ggcgacggccgggcc 454
>ISArsp6
Length = 26712
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 224 gcgtctgccggcagc 238
|||||||||||||||
Sbjct: 8814 gcgtctgccggcagc 8800
>ISArsp4
Length = 1400
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 272 gtcaaggtccgcgac 286
|||||||||||||||
Sbjct: 647 gtcaaggtccgcgac 661
>ISApu1
Length = 1384
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 46 agcagcaaggcgccg 60
|||||||||||||||
Sbjct: 507 agcagcaaggcgccg 493
>ISCc2
Length = 1213
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 154 cttccgggcgacggc 168
|||||||||||||||
Sbjct: 1115 cttccgggcgacggc 1101
>ISRso13
Length = 1467
Score = 30.2 bits (15), Expect = 1.4
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 82 gagcatgcgcgccgcccgc 100
||||||||||||| |||||
Sbjct: 728 gagcatgcgcgccacccgc 710
>IS1632
Length = 1394
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 274 caaggtccgcgaccg 288
|||||||||||||||
Sbjct: 342 caaggtccgcgaccg 356
>ISXci1
Length = 2013
Score = 28.2 bits (14), Expect = 5.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 262 cgaaaagtgggtca 275
||||||||||||||
Sbjct: 1980 cgaaaagtgggtca 1993
>ISAs28
Length = 2626
Score = 28.2 bits (14), Expect = 5.7
Identities = 20/22 (90%)
Strand = Plus / Minus
Query: 54 ggcgccggtcaggacaccccgg 75
||||||||||||| |||||||
Sbjct: 1638 ggcgccggtcaggtaaccccgg 1617
>ISIde1
Length = 1448
Score = 28.2 bits (14), Expect = 5.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 158 cgggcgacggccgg 171
||||||||||||||
Sbjct: 1384 cgggcgacggccgg 1371
>ISSal1
Length = 2528
Score = 28.2 bits (14), Expect = 5.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 80 gtgagcatgcgcgc 93
||||||||||||||
Sbjct: 1709 gtgagcatgcgcgc 1722
>ISMau1
Length = 914
Score = 28.2 bits (14), Expect = 5.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 163 gacggccgggcccg 176
||||||||||||||
Sbjct: 244 gacggccgggcccg 231
>ISBdo1
Length = 1572
Score = 28.2 bits (14), Expect = 5.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 30 caggcgcgtcagca 43
||||||||||||||
Sbjct: 1406 caggcgcgtcagca 1393
>ISRop2
Length = 2171
Score = 28.2 bits (14), Expect = 5.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 134 gcgccggccgccgc 147
||||||||||||||
Sbjct: 1458 gcgccggccgccgc 1445
>ISMno5
Length = 1728
Score = 28.2 bits (14), Expect = 5.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 132 gcgcgccggccgcc 145
||||||||||||||
Sbjct: 717 gcgcgccggccgcc 730
>ISAar6
Length = 1519
Score = 28.2 bits (14), Expect = 5.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 273 tcaaggtccgcgac 286
||||||||||||||
Sbjct: 676 tcaaggtccgcgac 689
>ISMex26
Length = 1676
Score = 28.2 bits (14), Expect = 5.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 128 gcctgcgcgccggc 141
||||||||||||||
Sbjct: 1146 gcctgcgcgccggc 1159
>ISMex24
Length = 1677
Score = 28.2 bits (14), Expect = 5.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 133 cgcgccggccgccg 146
||||||||||||||
Sbjct: 282 cgcgccggccgccg 269
>ISMdi1
Length = 1058
Score = 28.2 bits (14), Expect = 5.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 132 gcgcgccggccgcc 145
||||||||||||||
Sbjct: 839 gcgcgccggccgcc 826
>ISStma13
Length = 1216
Score = 28.2 bits (14), Expect = 5.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 128 gcctgcgcgccggc 141
||||||||||||||
Sbjct: 352 gcctgcgcgccggc 339
>ISAzo26
Length = 2604
Score = 28.2 bits (14), Expect = 5.7
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 50 gcaaggcgccggtcagga 67
|||||||||||| |||||
Sbjct: 2195 gcaaggcgccgggcagga 2178
>ISApr7
Length = 3923
Score = 28.2 bits (14), Expect = 5.7
Identities = 20/22 (90%)
Strand = Plus / Plus
Query: 204 agggcaagcgcgtgttcgtcgc 225
|||||||||||| |||| ||||
Sbjct: 2482 agggcaagcgcgcgttcttcgc 2503
>ISAfe4
Length = 2477
Score = 28.2 bits (14), Expect = 5.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 55 gcgccggtcaggac 68
||||||||||||||
Sbjct: 281 gcgccggtcaggac 294
>ISCro3
Length = 1430
Score = 28.2 bits (14), Expect = 5.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 29 ccaggcgcgtcagc 42
||||||||||||||
Sbjct: 371 ccaggcgcgtcagc 384
>ISPa25
Length = 1410
Score = 28.2 bits (14), Expect = 5.7
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 125 gcggcctgcgcgccggcc 142
||||||||||||| ||||
Sbjct: 1044 gcggcctgcgcgctggcc 1061
>ISGvi2
Length = 1487
Score = 28.2 bits (14), Expect = 5.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 88 gcgcgccgcccgcc 101
||||||||||||||
Sbjct: 833 gcgcgccgcccgcc 820
>ISRm14
Length = 2695
Score = 28.2 bits (14), Expect = 5.7
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 33 gcgcgtcagcaagagcag 50
||||||||||| ||||||
Sbjct: 1045 gcgcgtcagcatgagcag 1062
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_123_length_289_cov_0.551887_ID_5416
(289 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISMyma9 | IS21 | Mycobacterium marinum | 34 | 0.092 | |
| ISAau2 | IS21 | Arthrobacter aurescens | 34 | 0.092 | |
| ISMt3 | IS21 | - | Mycobacterium tuberculosis | 34 | 0.092 |
| ISMbo1 | IS21 | - | Mycobacterium bovis | 34 | 0.092 |
| ISAar37 | IS3 | IS3 | Arthrobacter arilaitensis | 32 | 0.36 |
| ISApr11 | IS1380 | Alpha proteobacterium | 32 | 0.36 | |
| ISGvi2 | IS4 | IS50 | Gloeobacter violaceus | 32 | 0.36 |
| ISPa42 | Tn3 | Pseudomonas aeruginosa | 32 | 0.36 | |
| ISAzs20 | IS66 | Azospirillum sp. | 30 | 1.4 | |
| ISMsm12 | IS1380 | Mycobacterium smegmatis | 30 | 1.4 | |
| ISMav8 | IS1380 | Mycobacterium avium | 30 | 1.4 | |
| ISMsm11 | IS1380 | Mycobacterium smegmatis | 30 | 1.4 | |
| IS220 | IS1380 | - | Mycobacterium fortuitum | 30 | 1.4 |
| IS219 | IS1380 | - | Mycobacterium fortuitum | 30 | 1.4 |
| ISTsu1 | IS256 | Thermaerobacter subterraneus | 28 | 5.7 | |
| ISMno16 | IS110 | IS1111 | Methylobacterium nodulans | 28 | 5.7 |
| ISHam1 | IS630 | Haloarcula amylolytica | 28 | 5.7 | |
| TnShfr1 | Tn3 | Shewanella frigidimarina | 28 | 5.7 | |
| ISAs21 | IS66 | ISBst12 | Aeromonas salmonicida | 28 | 5.7 |
| ISPsp10 | IS5 | IS427 | Pseudomonas sp. | 28 | 5.7 |
| ISPa38 | Tn3 | Pseudomonas aeruginosa | 28 | 5.7 | |
| ISVbsp3 | IS5 | IS903 | Vibrio sp. | 28 | 5.7 |
| ISAcfe2 | IS1182 | Acidimicrobium ferrooxidans | 28 | 5.7 | |
| ISRjo3 | ISNCY | ISDol1 | Rhodococcus jostii | 28 | 5.7 |
| ISStma11 | ISL3 | Stenotrophomonas maltophilia | 28 | 5.7 | |
| ISThsp19 | IS21 | Thiomonas sp. | 28 | 5.7 | |
| ISCARN6 | IS200/IS605 | Metagenomic data from CARNOULES | 28 | 5.7 | |
| ISTth5 | IS256 | Thermus thermophilus | 28 | 5.7 | |
| ISCro5 | IS110 | IS1111 | Citrobacter rodentium | 28 | 5.7 |
| IS1088 | IS30 | Cupriavidus necator | 28 | 5.7 | |
| IS1632 | IS256 | - | Bradyrhizobium japonicum | 28 | 5.7 |
| IS1310 | IS256 | - | Enterococcus hirae | 28 | 5.7 |
| IS1001 | ISL3 | - | Bordetella parapertussis | 28 | 5.7 |
>ISMyma9
Length = 2162
Score = 34.2 bits (17), Expect = 0.092
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 123 ggcgacggtgatcgccg 139
|||||||||||||||||
Sbjct: 291 ggcgacggtgatcgccg 307
>ISAau2
Length = 2222
Score = 34.2 bits (17), Expect = 0.092
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 123 ggcgacggtgatcgccg 139
|||||||||||||||||
Sbjct: 321 ggcgacggtgatcgccg 337
>ISMt3
Length = 2213
Score = 34.2 bits (17), Expect = 0.092
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 123 ggcgacggtgatcgccg 139
|||||||||||||||||
Sbjct: 320 ggcgacggtgatcgccg 336
>ISMbo1
Length = 2212
Score = 34.2 bits (17), Expect = 0.092
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 123 ggcgacggtgatcgccg 139
|||||||||||||||||
Sbjct: 320 ggcgacggtgatcgccg 336
>ISAar37
Length = 1309
Score = 32.2 bits (16), Expect = 0.36
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 121 ctggcgacggtgatcg 136
||||||||||||||||
Sbjct: 810 ctggcgacggtgatcg 825
>ISApr11
Length = 1667
Score = 32.2 bits (16), Expect = 0.36
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 91 gcaccgtctgacgcggcccg 110
|||||| |||||||||||||
Sbjct: 900 gcaccggctgacgcggcccg 919
>ISGvi2
Length = 1487
Score = 32.2 bits (16), Expect = 0.36
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 189 ggcgcgcaccacccac 204
||||||||||||||||
Sbjct: 938 ggcgcgcaccacccac 923
>ISPa42
Length = 16941
Score = 32.2 bits (16), Expect = 0.36
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 75 ggcctggctggggccg 90
||||||||||||||||
Sbjct: 2032 ggcctggctggggccg 2017
Score = 28.2 bits (14), Expect = 5.7
Identities = 20/22 (90%)
Strand = Plus / Plus
Query: 71 ggctggcctggctggggccggc 92
||||||||||| ||| ||||||
Sbjct: 11251 ggctggcctgggtggtgccggc 11272
>ISAzs20
Length = 2811
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 122 tggcgacggtgatcg 136
|||||||||||||||
Sbjct: 311 tggcgacggtgatcg 297
>ISMsm12
Length = 3256
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 128 cggtgatcgccggcg 142
|||||||||||||||
Sbjct: 2288 cggtgatcgccggcg 2302
>ISMav8
Length = 2064
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 128 cggtgatcgccggcg 142
|||||||||||||||
Sbjct: 769 cggtgatcgccggcg 755
Score = 28.2 bits (14), Expect = 5.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 207 ggcctattcggcga 220
||||||||||||||
Sbjct: 1609 ggcctattcggcga 1596
>ISMsm11
Length = 1658
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 127 acggtgatcgccggc 141
|||||||||||||||
Sbjct: 312 acggtgatcgccggc 326
Score = 28.2 bits (14), Expect = 5.7
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 123 ggcgacggtgatcgccgg 140
|||| |||||||||||||
Sbjct: 686 ggcgccggtgatcgccgg 703
>IS220
Length = 3257
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 128 cggtgatcgccggcg 142
|||||||||||||||
Sbjct: 2289 cggtgatcgccggcg 2303
>IS219
Length = 1654
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 127 acggtgatcgccggc 141
|||||||||||||||
Sbjct: 312 acggtgatcgccggc 326
>ISTsu1
Length = 1315
Score = 28.2 bits (14), Expect = 5.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 179 tggcctacatggcg 192
||||||||||||||
Sbjct: 1004 tggcctacatggcg 1017
>ISMno16
Length = 1404
Score = 28.2 bits (14), Expect = 5.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 75 ggcctggctggggc 88
||||||||||||||
Sbjct: 812 ggcctggctggggc 825
>ISHam1
Length = 1139
Score = 28.2 bits (14), Expect = 5.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 245 tgatggcggtaccg 258
||||||||||||||
Sbjct: 610 tgatggcggtaccg 623
>TnShfr1
Length = 5131
Score = 28.2 bits (14), Expect = 5.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 71 ggctggcctggctg 84
||||||||||||||
Sbjct: 2740 ggctggcctggctg 2753
>ISAs21
Length = 1530
Score = 28.2 bits (14), Expect = 5.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 158 ggctgggcaccacg 171
||||||||||||||
Sbjct: 315 ggctgggcaccacg 302
>ISPsp10
Length = 945
Score = 28.2 bits (14), Expect = 5.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 119 tgctggcgacggtg 132
||||||||||||||
Sbjct: 901 tgctggcgacggtg 914
>ISPa38
Length = 6455
Score = 28.2 bits (14), Expect = 5.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 71 ggctggcctggctg 84
||||||||||||||
Sbjct: 4075 ggctggcctggctg 4088
>ISVbsp3
Length = 1054
Score = 28.2 bits (14), Expect = 5.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 125 cgacggtgatcgcc 138
||||||||||||||
Sbjct: 984 cgacggtgatcgcc 997
>ISAcfe2
Length = 1771
Score = 28.2 bits (14), Expect = 5.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 195 caccacccacccgg 208
||||||||||||||
Sbjct: 1603 caccacccacccgg 1590
>ISRjo3
Length = 1638
Score = 28.2 bits (14), Expect = 5.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 159 gctgggcaccacgg 172
||||||||||||||
Sbjct: 547 gctgggcaccacgg 534
>ISStma11
Length = 4621
Score = 28.2 bits (14), Expect = 5.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 188 tggcgcgcaccacc 201
||||||||||||||
Sbjct: 783 tggcgcgcaccacc 770
>ISThsp19
Length = 2657
Score = 28.2 bits (14), Expect = 5.7
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 160 ctgggcaccacggccttc 177
|||| |||||||||||||
Sbjct: 1916 ctggccaccacggccttc 1933
>ISCARN6
Length = 1856
Score = 28.2 bits (14), Expect = 5.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 192 gcgcaccacccacc 205
||||||||||||||
Sbjct: 131 gcgcaccacccacc 144
>ISTth5
Length = 1263
Score = 28.2 bits (14), Expect = 5.7
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 109 cgactggtggtgctggcg 126
|||||| |||||||||||
Sbjct: 432 cgactgatggtgctggcg 415
>ISCro5
Length = 1372
Score = 28.2 bits (14), Expect = 5.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 75 ggcctggctggggc 88
||||||||||||||
Sbjct: 816 ggcctggctggggc 829
>IS1088
Length = 1103
Score = 28.2 bits (14), Expect = 5.7
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 107 cccgactggtggtgctgg 124
|||| |||||||||||||
Sbjct: 655 cccgtctggtggtgctgg 672
>IS1632
Length = 1394
Score = 28.2 bits (14), Expect = 5.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 128 cggtgatcgccggc 141
||||||||||||||
Sbjct: 537 cggtgatcgccggc 550
>IS1310
Length = 1352
Score = 28.2 bits (14), Expect = 5.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 192 gcgcaccacccacc 205
||||||||||||||
Sbjct: 1140 gcgcaccacccacc 1153
>IS1001
Length = 1306
Score = 28.2 bits (14), Expect = 5.7
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 71 ggctggcctggctggggc 88
|||| |||||||||||||
Sbjct: 360 ggcttgcctggctggggc 377
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_124_length_287_cov_1.03333_ID_5418
(287 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISPsy3 | IS91 | - | Pseudomonas syringae | 34 | 0.092 |
| ISNagr2 | IS630 | Natronobacterium gregoryi | 32 | 0.36 | |
| ISPpa7 | IS66 | Paracoccus pantotrophus | 32 | 0.36 | |
| ISAar40 | IS3 | IS3 | Arthrobacter arilaitensis | 32 | 0.36 |
| IS1071 | Tn3 | - | Alcaligenes sp | 32 | 0.36 |
| ISAfe13 | ISKra4 | ISAzba1 | Acidithiobacillus ferrivorans | 30 | 1.4 |
| ISAzs29 | Tn3 | Azospirillum sp. | 30 | 1.4 | |
| ISGau8 | IS30 | Gemmatimonas aurantiaca | 30 | 1.4 | |
| ISThsp9 | Tn3 | Thiomonas sp. | 30 | 1.4 | |
| ISThsp8 | IS1634 | Thiomonas sp. | 30 | 1.4 | |
| ISRhsp5 | IS66 | Rhodobacter sphaeroides | 30 | 1.4 | |
| ISRme9 | IS21 | Ralstonia metallidurans | 30 | 1.4 | |
| ISMsm2 | IS630 | Mycobacterium smegmatis | 30 | 1.4 | |
| ISPa42 | Tn3 | Pseudomonas aeruginosa | 30 | 1.4 | |
| IS408 | IS21 | - | Burkholderia cepacia | 30 | 1.4 |
| ISRel10 | ISNCY | IS1202 | Rhizobium etli | 28 | 5.6 |
| ISMdi15 | IS200/IS605 | IS1341 | Methylobacterium dichloromethanicum | 28 | 5.6 |
| ISPko3 | IS5 | IS903 | Paracoccus kondratievae | 28 | 5.6 |
| ISAba30 | IS200/IS605 | Acinetobacter baumannii | 28 | 5.6 | |
| ISHli1 | IS5 | ISH1 | Halohasta litchfieldiae | 28 | 5.6 |
| ISSri1 | ISKra4 | ISKra4 | Streptomyces rimosus | 28 | 5.6 |
| ISAzba9 | ISL3 | Azospirillum brasilense | 28 | 5.6 | |
| ISAmi1 | IS5 | ISL2 | Actinosynnema mirum | 28 | 5.6 |
| ISHut1 | IS5 | ISH1 | Halorhabdus utahensis | 28 | 5.6 |
| ISFsp12 | ISAzo13 | Frankia sp. | 28 | 5.6 | |
| ISRsp7 | IS1380 | Rhizobium sp. | 28 | 5.6 | |
| ISLsp5 | IS1380 | Leptospirillum sp. | 28 | 5.6 | |
| ISAzo1 | IS1182 | Azoarcus sp. | 28 | 5.6 | |
| ISMex38 | Tn3 | Methylobacterium extorquens | 28 | 5.6 | |
| ISCARN80 | IS110 | IS1111 | Metagenomic data from CARNOULES | 28 | 5.6 |
| ISCARN35 | IS4 | IS4 | Metagenomic data from CARNOULES | 28 | 5.6 |
| ISThsp4 | IS3 | IS3 | Thiomonas sp. | 28 | 5.6 |
| ISCARN22 | IS66 | Metagenomic data from CARNOULES | 28 | 5.6 | |
| ISThsp1 | IS1182 | Thiomonas sp. | 28 | 5.6 | |
| ISFsp11 | IS66 | ISBst12 | Frankia sp. | 28 | 5.6 |
| ISApr4 | IS1595 | ISNwi1 | Alpha proteobacterium | 28 | 5.6 |
| ISApr2 | IS1595 | ISSod11 | Alpha proteobacterium | 28 | 5.6 |
| ISButh1 | IS3 | IS2 | Burkholderia thailandensis | 28 | 5.6 |
| ISRba4 | IS701 | Rhodopirellula baltica | 28 | 5.6 | |
| IS931 | IS256 | - | Burkholderia cepacia | 28 | 5.6 |
>ISPsy3
Length = 1507
Score = 34.2 bits (17), Expect = 0.092
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 22 cggtagcttttttgcagcagg 42
||||||||||||||| |||||
Sbjct: 379 cggtagcttttttgccgcagg 359
>ISNagr2
Length = 1067
Score = 32.2 bits (16), Expect = 0.36
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 250 tcgatcagacgcgaca 265
||||||||||||||||
Sbjct: 594 tcgatcagacgcgaca 609
>ISPpa7
Length = 2731
Score = 32.2 bits (16), Expect = 0.36
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 203 gatcgcggtcgccaag 218
||||||||||||||||
Sbjct: 1593 gatcgcggtcgccaag 1608
>ISAar40
Length = 1347
Score = 32.2 bits (16), Expect = 0.36
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 206 cgcggtcgccaaggaa 221
||||||||||||||||
Sbjct: 166 cgcggtcgccaaggaa 181
>IS1071
Length = 3201
Score = 32.2 bits (16), Expect = 0.36
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 199 agctgatcgcggtcgc 214
||||||||||||||||
Sbjct: 567 agctgatcgcggtcgc 552
>ISAfe13
Length = 2868
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 48 gctgtcgcgcagggc 62
|||||||||||||||
Sbjct: 173 gctgtcgcgcagggc 187
>ISAzs29
Length = 3897
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 171 cagcaccgcgccggc 185
|||||||||||||||
Sbjct: 3591 cagcaccgcgccggc 3605
Score = 28.2 bits (14), Expect = 5.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 120 cgccgcccgcgccg 133
||||||||||||||
Sbjct: 688 cgccgcccgcgccg 675
>ISGau8
Length = 1364
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 109 cggccaagctgcgcc 123
|||||||||||||||
Sbjct: 537 cggccaagctgcgcc 551
>ISThsp9
Length = 6215
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 45 caggctgtcgcgcag 59
|||||||||||||||
Sbjct: 4041 caggctgtcgcgcag 4027
>ISThsp8
Length = 1929
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 174 caccgcgccggcctc 188
|||||||||||||||
Sbjct: 359 caccgcgccggcctc 345
>ISRhsp5
Length = 2528
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 115 agctgcgccgcccgc 129
|||||||||||||||
Sbjct: 1619 agctgcgccgcccgc 1605
>ISRme9
Length = 2688
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 171 cagcaccgcgccggc 185
|||||||||||||||
Sbjct: 696 cagcaccgcgccggc 710
>ISMsm2
Length = 1126
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 124 gcccgcgccggggtg 138
|||||||||||||||
Sbjct: 648 gcccgcgccggggtg 634
>ISPa42
Length = 16941
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 111 gccaagctgcgccgc 125
|||||||||||||||
Sbjct: 6557 gccaagctgcgccgc 6571
>IS408
Length = 2798
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 171 cagcaccgcgccggc 185
|||||||||||||||
Sbjct: 685 cagcaccgcgccggc 699
>ISRel10
Length = 2528
Score = 28.2 bits (14), Expect = 5.6
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 203 gatcgcggtcgccaagga 220
|||| |||||||||||||
Sbjct: 450 gatctcggtcgccaagga 467
>ISMdi15
Length = 1344
Score = 28.2 bits (14), Expect = 5.6
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 38 gcaggcacaggctgtcgc 55
|||||||||||| |||||
Sbjct: 1131 gcaggcacaggccgtcgc 1148
>ISPko3
Length = 1017
Score = 28.2 bits (14), Expect = 5.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 120 cgccgcccgcgccg 133
||||||||||||||
Sbjct: 684 cgccgcccgcgccg 697
>ISAba30
Length = 1770
Score = 28.2 bits (14), Expect = 5.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 200 gctgatcgcggtcg 213
||||||||||||||
Sbjct: 1283 gctgatcgcggtcg 1270
>ISHli1
Length = 926
Score = 28.2 bits (14), Expect = 5.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 200 gctgatcgcggtcg 213
||||||||||||||
Sbjct: 433 gctgatcgcggtcg 420
>ISSri1
Length = 2269
Score = 28.2 bits (14), Expect = 5.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 80 cgcctgccggcacc 93
||||||||||||||
Sbjct: 2040 cgcctgccggcacc 2053
>ISAzba9
Length = 1847
Score = 28.2 bits (14), Expect = 5.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 117 ctgcgccgcccgcg 130
||||||||||||||
Sbjct: 1031 ctgcgccgcccgcg 1018
>ISAmi1
Length = 883
Score = 28.2 bits (14), Expect = 5.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 90 caccggctgaccgg 103
||||||||||||||
Sbjct: 828 caccggctgaccgg 841
>ISHut1
Length = 926
Score = 28.2 bits (14), Expect = 5.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 200 gctgatcgcggtcg 213
||||||||||||||
Sbjct: 433 gctgatcgcggtcg 420
>ISFsp12
Length = 1730
Score = 28.2 bits (14), Expect = 5.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 173 gcaccgcgccggcc 186
||||||||||||||
Sbjct: 672 gcaccgcgccggcc 685
>ISRsp7
Length = 2024
Score = 28.2 bits (14), Expect = 5.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 56 gcagggcgccggca 69
||||||||||||||
Sbjct: 356 gcagggcgccggca 343
>ISLsp5
Length = 1759
Score = 28.2 bits (14), Expect = 5.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 82 cctgccggcaccgg 95
||||||||||||||
Sbjct: 249 cctgccggcaccgg 262
>ISAzo1
Length = 1545
Score = 28.2 bits (14), Expect = 5.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 200 gctgatcgcggtcg 213
||||||||||||||
Sbjct: 1114 gctgatcgcggtcg 1127
>ISMex38
Length = 3841
Score = 28.2 bits (14), Expect = 5.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 179 cgccggcctctacc 192
||||||||||||||
Sbjct: 1598 cgccggcctctacc 1611
>ISCARN80
Length = 1409
Score = 28.2 bits (14), Expect = 5.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 268 atcggcaggtcgat 281
||||||||||||||
Sbjct: 661 atcggcaggtcgat 674
>ISCARN35
Length = 1455
Score = 28.2 bits (14), Expect = 5.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 83 ctgccggcaccggc 96
||||||||||||||
Sbjct: 213 ctgccggcaccggc 226
>ISThsp4
Length = 1289
Score = 28.2 bits (14), Expect = 5.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 108 gcggccaagctgcg 121
||||||||||||||
Sbjct: 969 gcggccaagctgcg 982
>ISCARN22
Length = 2674
Score = 28.2 bits (14), Expect = 5.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 48 gctgtcgcgcaggg 61
||||||||||||||
Sbjct: 1873 gctgtcgcgcaggg 1886
>ISThsp1
Length = 1539
Score = 28.2 bits (14), Expect = 5.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 242 gcagcgcgtcgatc 255
||||||||||||||
Sbjct: 588 gcagcgcgtcgatc 575
>ISFsp11
Length = 1836
Score = 28.2 bits (14), Expect = 5.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 120 cgccgcccgcgccg 133
||||||||||||||
Sbjct: 1347 cgccgcccgcgccg 1360
Score = 28.2 bits (14), Expect = 5.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 242 gcagcgcgtcgatc 255
||||||||||||||
Sbjct: 1402 gcagcgcgtcgatc 1389
>ISApr4
Length = 3691
Score = 28.2 bits (14), Expect = 5.6
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 263 acatcatcggcaggtcga 280
|||| |||||||||||||
Sbjct: 1703 acatgatcggcaggtcga 1720
>ISApr2
Length = 1029
Score = 28.2 bits (14), Expect = 5.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 111 gccaagctgcgccg 124
||||||||||||||
Sbjct: 448 gccaagctgcgccg 461
>ISButh1
Length = 1330
Score = 28.2 bits (14), Expect = 5.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 74 cgctttcgcctgcc 87
||||||||||||||
Sbjct: 293 cgctttcgcctgcc 280
>ISRba4
Length = 1543
Score = 28.2 bits (14), Expect = 5.6
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 201 ctgatcgcggtcgccaag 218
||||||||||||| ||||
Sbjct: 740 ctgatcgcggtcggcaag 723
>IS931
Length = 1477
Score = 28.2 bits (14), Expect = 5.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 153 ccacgcgcaaatat 166
||||||||||||||
Sbjct: 550 ccacgcgcaaatat 563
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_125_length_286_cov_1.04785_ID_5420
(286 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISAzs21 | IS66 | Azospirillum sp. | 32 | 0.36 | |
| ISJp4 | IS5 | IS427 | Ralstonia eutropha | 32 | 0.36 |
| ISNpe10 | IS200/IS605 | Natrinema pellirubrum | 30 | 1.4 | |
| ISBte1 | ISKra4 | ISAzba1 | Burkholderia terrae | 30 | 1.4 |
| ISPso2 | IS5 | IS427 | Paracoccus solventivorans | 30 | 1.4 |
| ISFsp12 | ISAzo13 | Frankia sp. | 30 | 1.4 | |
| ISAzba5 | IS5 | IS427 | Azospirillum brasilense | 30 | 1.4 |
| ISThsp10 | IS21 | Thiomonas sp. | 30 | 1.4 | |
| ISSce1 | IS1 | ISMhu11 | Sorangium cellulosum | 30 | 1.4 |
| IS1602 | IS607 | Mycobacterium tuberculosis | 30 | 1.4 | |
| TnXo19 | Tn3 | Xanthomonas oryzae | 28 | 5.6 | |
| ISFsp17 | ISKra4 | ISKra4 | Frankia sp. | 28 | 5.6 |
| ISEc38 | ISL3 | Escherichia coli | 28 | 5.6 | |
| ISAzs20 | IS66 | Azospirillum sp. | 28 | 5.6 | |
| ISAzs1 | IS701 | Azospirillum sp. | 28 | 5.6 | |
| ISPse1 | IS1182 | Paracoccus seriniphilus | 28 | 5.6 | |
| ISHwa8 | IS4 | IS4Sa | Haloquadratum walsbyi | 28 | 5.6 |
| ISMtsp15 | IS481 | Methylobacterium sp. | 28 | 5.6 | |
| ISMra4 | IS3 | IS3 | Methylobacterium radiotolerans | 28 | 5.6 |
| ISArsp6 | Tn3 | Arthrobacter sp. | 28 | 5.6 | |
| ISMch8 | IS5 | IS5 | Methylobacterium chloromethanicum | 28 | 5.6 |
| ISMex40 | IS5 | IS1031 | Methylobacterium extorquens | 28 | 5.6 |
| ISMdi28 | IS701 | Methylobacterium dichloromethanicum | 28 | 5.6 | |
| ISAnsp6 | IS1182 | Anaeromyxobacter sp. | 28 | 5.6 | |
| ISCARN81 | IS3 | IS3 | Metagenomic data from CARNOULES | 28 | 5.6 |
| ISVei5 | IS5 | IS5 | Verminephrobacter eiseniae | 28 | 5.6 |
| ISAzo11 | IS5 | IS5 | Azoarcus sp. | 28 | 5.6 |
| ISGdi12 | IS701 | Gluconacetobacter diazotrophicus | 28 | 5.6 | |
| ISAli10 | IS66 | Azospirillum lipoferum | 28 | 5.6 | |
| ISAli7 | IS256 | Azospirillum lipoferum | 28 | 5.6 | |
| ISRhsp4 | IS5 | IS427 | Rhodobacter sphaeroides | 28 | 5.6 |
| ISMva2 | IS481 | Mycobacterium vanbaalenii | 28 | 5.6 | |
| ISCmi2 | IS481 | Clavibacter michiganensis | 28 | 5.6 | |
| ISAzvi10 | IS701 | Azotobacter vinelandii | 28 | 5.6 | |
| ISAzo7 | IS1595 | ISSod11 | Azoarcus sp. | 28 | 5.6 |
| ISRtr3 | IS5 | IS1031 | Rhizobium tropici | 28 | 5.6 |
| ISPna2 | IS1595 | ISPna2 | Polaromonas naphthalenivorans | 28 | 5.6 |
| ISPa8 | IS5 | IS5 | Pseudomonas aeruginosa | 28 | 5.6 |
| IS470 | IS5 | ISL2 | Streptomyces coelicolor | 28 | 5.6 |
| IS1357 | IS701 | - | Methylobacterium dichloromethanicum | 28 | 5.6 |
>ISAzs21
Length = 2598
Score = 32.2 bits (16), Expect = 0.36
Identities = 22/24 (91%)
Strand = Plus / Minus
Query: 74 cggcagcgtgcgaatgggccggcg 97
|||||||||||| ||||||||||
Sbjct: 1301 cggcagcgtgcgcttgggccggcg 1278
>ISJp4
Length = 915
Score = 32.2 bits (16), Expect = 0.36
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 127 ggcgggatcgcgtcga 142
||||||||||||||||
Sbjct: 590 ggcgggatcgcgtcga 575
>ISNpe10
Length = 1835
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 230 ccgaggtgtccgccg 244
|||||||||||||||
Sbjct: 1030 ccgaggtgtccgccg 1044
>ISBte1
Length = 2143
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 163 ccggaggcgcgtcgc 177
|||||||||||||||
Sbjct: 1204 ccggaggcgcgtcgc 1218
>ISPso2
Length = 832
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 165 ggaggcgcgtcgcga 179
|||||||||||||||
Sbjct: 734 ggaggcgcgtcgcga 748
>ISFsp12
Length = 1730
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 90 ggccggcgacggcgt 104
|||||||||||||||
Sbjct: 664 ggccggcgacggcgt 650
>ISAzba5
Length = 840
Score = 30.2 bits (15), Expect = 1.4
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 42 ggcgcgtggcggcatgttg 60
|||||||||||| ||||||
Sbjct: 656 ggcgcgtggcgggatgttg 638
>ISThsp10
Length = 2501
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 83 gcgaatgggccggcg 97
|||||||||||||||
Sbjct: 2247 gcgaatgggccggcg 2261
>ISSce1
Length = 4601
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 141 gagcggcttcgatcg 155
|||||||||||||||
Sbjct: 2537 gagcggcttcgatcg 2523
>IS1602
Length = 2053
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 121 gcgcccggcgggatc 135
|||||||||||||||
Sbjct: 216 gcgcccggcgggatc 202
>TnXo19
Length = 18767
Score = 28.2 bits (14), Expect = 5.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 261 ctcgccagcggcgg 274
||||||||||||||
Sbjct: 5934 ctcgccagcggcgg 5921
>ISFsp17
Length = 1693
Score = 28.2 bits (14), Expect = 5.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 131 ggatcgcgtcgagc 144
||||||||||||||
Sbjct: 1136 ggatcgcgtcgagc 1123
>ISEc38
Length = 1722
Score = 28.2 bits (14), Expect = 5.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 41 cggcgcgtggcggc 54
||||||||||||||
Sbjct: 1515 cggcgcgtggcggc 1528
>ISAzs20
Length = 2811
Score = 28.2 bits (14), Expect = 5.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 14 gctggccgaacttc 27
||||||||||||||
Sbjct: 1517 gctggccgaacttc 1504
>ISAzs1
Length = 1508
Score = 28.2 bits (14), Expect = 5.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 87 atgggccggcgacg 100
||||||||||||||
Sbjct: 564 atgggccggcgacg 577
>ISPse1
Length = 1653
Score = 28.2 bits (14), Expect = 5.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 93 cggcgacggcgtgc 106
||||||||||||||
Sbjct: 953 cggcgacggcgtgc 940
>ISHwa8
Length = 1509
Score = 28.2 bits (14), Expect = 5.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 64 ctgagtgagtcggc 77
||||||||||||||
Sbjct: 899 ctgagtgagtcggc 886
>ISMtsp15
Length = 1122
Score = 28.2 bits (14), Expect = 5.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 35 ccgcggcggcgcgt 48
||||||||||||||
Sbjct: 494 ccgcggcggcgcgt 507
>ISMra4
Length = 1237
Score = 28.2 bits (14), Expect = 5.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 38 cggcggcgcgtggc 51
||||||||||||||
Sbjct: 584 cggcggcgcgtggc 597
>ISArsp6
Length = 26712
Score = 28.2 bits (14), Expect = 5.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 82 tgcgaatgggccgg 95
||||||||||||||
Sbjct: 7028 tgcgaatgggccgg 7015
>ISMch8
Length = 1494
Score = 28.2 bits (14), Expect = 5.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 262 tcgccagcggcggc 275
||||||||||||||
Sbjct: 1308 tcgccagcggcggc 1321
>ISMex40
Length = 918
Score = 28.2 bits (14), Expect = 5.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 126 cggcgggatcgcgt 139
||||||||||||||
Sbjct: 266 cggcgggatcgcgt 279
>ISMdi28
Length = 1410
Score = 28.2 bits (14), Expect = 5.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 116 ccgtggcgcccggc 129
||||||||||||||
Sbjct: 476 ccgtggcgcccggc 463
>ISAnsp6
Length = 1515
Score = 28.2 bits (14), Expect = 5.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 131 ggatcgcgtcgagc 144
||||||||||||||
Sbjct: 166 ggatcgcgtcgagc 153
>ISCARN81
Length = 1406
Score = 28.2 bits (14), Expect = 5.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 167 aggcgcgtcgcgag 180
||||||||||||||
Sbjct: 168 aggcgcgtcgcgag 181
>ISVei5
Length = 1620
Score = 28.2 bits (14), Expect = 5.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 36 cgcggcggcgcgtg 49
||||||||||||||
Sbjct: 1580 cgcggcggcgcgtg 1567
>ISAzo11
Length = 1280
Score = 28.2 bits (14), Expect = 5.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 117 cgtggcgcccggcg 130
||||||||||||||
Sbjct: 600 cgtggcgcccggcg 613
>ISGdi12
Length = 1419
Score = 28.2 bits (14), Expect = 5.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 6 ctggcatggctggc 19
||||||||||||||
Sbjct: 1138 ctggcatggctggc 1151
>ISAli10
Length = 2584
Score = 28.2 bits (14), Expect = 5.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 14 gctggccgaacttc 27
||||||||||||||
Sbjct: 1547 gctggccgaacttc 1534
>ISAli7
Length = 1416
Score = 28.2 bits (14), Expect = 5.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 90 ggccggcgacggcg 103
||||||||||||||
Sbjct: 195 ggccggcgacggcg 208
>ISRhsp4
Length = 840
Score = 28.2 bits (14), Expect = 5.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 93 cggcgacggcgtgc 106
||||||||||||||
Sbjct: 458 cggcgacggcgtgc 445
>ISMva2
Length = 1966
Score = 28.2 bits (14), Expect = 5.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 171 gcgtcgcgagttgc 184
||||||||||||||
Sbjct: 876 gcgtcgcgagttgc 889
>ISCmi2
Length = 1054
Score = 28.2 bits (14), Expect = 5.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 91 gccggcgacggcgt 104
||||||||||||||
Sbjct: 207 gccggcgacggcgt 220
>ISAzvi10
Length = 1431
Score = 28.2 bits (14), Expect = 5.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 6 ctggcatggctggc 19
||||||||||||||
Sbjct: 1139 ctggcatggctggc 1152
>ISAzo7
Length = 1044
Score = 28.2 bits (14), Expect = 5.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 138 gtcgagcggcttcg 151
||||||||||||||
Sbjct: 142 gtcgagcggcttcg 155
Score = 28.2 bits (14), Expect = 5.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 98 acggcgtgcgcgtc 111
||||||||||||||
Sbjct: 298 acggcgtgcgcgtc 285
>ISRtr3
Length = 931
Score = 28.2 bits (14), Expect = 5.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 15 ctggccgaacttcg 28
||||||||||||||
Sbjct: 698 ctggccgaacttcg 685
>ISPna2
Length = 1049
Score = 28.2 bits (14), Expect = 5.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 100 ggcgtgcgcgtcaa 113
||||||||||||||
Sbjct: 835 ggcgtgcgcgtcaa 848
>ISPa8
Length = 1324
Score = 28.2 bits (14), Expect = 5.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 192 cgcggccaaggtgc 205
||||||||||||||
Sbjct: 869 cgcggccaaggtgc 856
>IS470
Length = 1010
Score = 28.2 bits (14), Expect = 5.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 165 ggaggcgcgtcgcg 178
||||||||||||||
Sbjct: 40 ggaggcgcgtcgcg 53
>IS1357
Length = 1435
Score = 28.2 bits (14), Expect = 5.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 6 ctggcatggctggc 19
||||||||||||||
Sbjct: 1134 ctggcatggctggc 1147
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_126_length_285_cov_0.956731_ID_5422
(285 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISPa43 | Tn3 | Pseudomonas aeruginosa | 34 | 0.091 | |
| ISGsu7 | IS3 | Geobacter sulfurreducens | 32 | 0.36 | |
| ISXoo14 | IS5 | Xanthomonas oryzae | 30 | 1.4 | |
| ISPosp7 | IS1380 | Polaromonas sp. | 30 | 1.4 | |
| ISCARN81 | IS3 | IS3 | Metagenomic data from CARNOULES | 30 | 1.4 |
| ISLxx1 | IS21 | Leifsonia xyli | 30 | 1.4 | |
| ISPa42 | Tn3 | Pseudomonas aeruginosa | 30 | 1.4 | |
| ISMyma9 | IS21 | Mycobacterium marinum | 28 | 5.6 | |
| ISBlo16 | IS256 | IS1249 | Bifidobacterium longum | 28 | 5.6 |
| ISAzs1 | IS701 | Azospirillum sp. | 28 | 5.6 | |
| ISVsp4 | IS66 | Verrucomicrobium spinosum | 28 | 5.6 | |
| ISMno36 | IS6 | Methylobacterium nodulans | 28 | 5.6 | |
| ISMex22 | Tn3 | Methylobacterium extorquens | 28 | 5.6 | |
| ISAcma11 | IS4 | ISPepr1 | Acaryochloris marina | 28 | 5.6 |
| ISStpr1 | IS481 | Streptomyces pristinaespiralis | 28 | 5.6 | |
| ISCARN22 | IS66 | Metagenomic data from CARNOULES | 28 | 5.6 | |
| ISDka1 | IS607 | Desulfurococcus kamchatkensis | 28 | 5.6 | |
| ISGdi10 | IS481 | Gluconacetobacter diazotrophicus | 28 | 5.6 | |
| ISRosp3 | IS1595 | ISNha5 | Roseobacter sp. | 28 | 5.6 |
| ISAau4 | Tn3 | Arthrobacter aurescens | 28 | 5.6 | |
| ISPa32 | IS3 | IS407 | Pseudomonas aeruginosa | 28 | 5.6 |
| ISAzo7 | IS1595 | ISSod11 | Azoarcus sp. | 28 | 5.6 |
| ISFsp3 | IS21 | Frankia sp. | 28 | 5.6 | |
| ISBcen17 | IS3 | IS3 | Burkholderia cenocepacia | 28 | 5.6 |
| ISRsp1 | IS66 | - | Rhizobium sp. | 28 | 5.6 |
| ISMav1 | IS21 | - | Mycobacterium avium | 28 | 5.6 |
| IS50R | IS4 | IS50 | Escherichia coli | 28 | 5.6 |
| IS1612 | IS21 | - | Mycobacterium avium | 28 | 5.6 |
>ISPa43
Length = 19903
Score = 34.2 bits (17), Expect = 0.091
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 161 ctggacgcggtgctggc 177
|||||||||||||||||
Sbjct: 7748 ctggacgcggtgctggc 7764
Score = 28.2 bits (14), Expect = 5.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 13 ggtcgcccaccccg 26
||||||||||||||
Sbjct: 1597 ggtcgcccaccccg 1584
Score = 28.2 bits (14), Expect = 5.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 56 accggcgccggcaa 69
||||||||||||||
Sbjct: 11465 accggcgccggcaa 11478
>ISGsu7
Length = 1351
Score = 32.2 bits (16), Expect = 0.36
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 61 cgccggcaagatcatc 76
||||||||||||||||
Sbjct: 775 cgccggcaagatcatc 790
>ISXoo14
Length = 1310
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 262 cgaattcgtcgaggc 276
|||||||||||||||
Sbjct: 857 cgaattcgtcgaggc 871
>ISPosp7
Length = 1612
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 18 cccaccccggcgtgg 32
|||||||||||||||
Sbjct: 1479 cccaccccggcgtgg 1465
>ISCARN81
Length = 1406
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 163 ggacgcggtgctggc 177
|||||||||||||||
Sbjct: 1136 ggacgcggtgctggc 1150
>ISLxx1
Length = 2205
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 159 atctggacgcggtgc 173
|||||||||||||||
Sbjct: 1245 atctggacgcggtgc 1231
>ISPa42
Length = 16941
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 214 ggcctgcttctcctg 228
|||||||||||||||
Sbjct: 13790 ggcctgcttctcctg 13804
>ISMyma9
Length = 2162
Score = 28.2 bits (14), Expect = 5.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 70 gatcatcgccgagg 83
||||||||||||||
Sbjct: 1982 gatcatcgccgagg 1969
>ISBlo16
Length = 1323
Score = 28.2 bits (14), Expect = 5.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 145 gctcgacgatgccg 158
||||||||||||||
Sbjct: 235 gctcgacgatgccg 248
>ISAzs1
Length = 1508
Score = 28.2 bits (14), Expect = 5.6
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 46 tcccggctccaccggcgc 63
||||||||||||| ||||
Sbjct: 261 tcccggctccacccgcgc 244
>ISVsp4
Length = 2518
Score = 28.2 bits (14), Expect = 5.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 168 cggtgctggccagt 181
||||||||||||||
Sbjct: 2328 cggtgctggccagt 2341
>ISMno36
Length = 888
Score = 28.2 bits (14), Expect = 5.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 157 cgatctggacgcgg 170
||||||||||||||
Sbjct: 447 cgatctggacgcgg 460
>ISMex22
Length = 3864
Score = 28.2 bits (14), Expect = 5.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 67 caagatcatcgccg 80
||||||||||||||
Sbjct: 3024 caagatcatcgccg 3037
>ISAcma11
Length = 1347
Score = 28.2 bits (14), Expect = 5.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 191 agctccgtacttaa 204
||||||||||||||
Sbjct: 1318 agctccgtacttaa 1305
>ISStpr1
Length = 1052
Score = 28.2 bits (14), Expect = 5.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 16 cgcccaccccggcg 29
||||||||||||||
Sbjct: 490 cgcccaccccggcg 503
>ISCARN22
Length = 2674
Score = 28.2 bits (14), Expect = 5.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 16 cgcccaccccggcg 29
||||||||||||||
Sbjct: 2123 cgcccaccccggcg 2110
>ISDka1
Length = 1999
Score = 28.2 bits (14), Expect = 5.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 220 cttctcctgcaccc 233
||||||||||||||
Sbjct: 1368 cttctcctgcaccc 1355
>ISGdi10
Length = 1229
Score = 28.2 bits (14), Expect = 5.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 145 gctcgacgatgccg 158
||||||||||||||
Sbjct: 937 gctcgacgatgccg 924
>ISRosp3
Length = 3472
Score = 28.2 bits (14), Expect = 5.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 155 gccgatctggacgc 168
||||||||||||||
Sbjct: 3313 gccgatctggacgc 3300
>ISAau4
Length = 3898
Score = 28.2 bits (14), Expect = 5.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 64 cggcaagatcatcg 77
||||||||||||||
Sbjct: 3260 cggcaagatcatcg 3273
>ISPa32
Length = 1236
Score = 28.2 bits (14), Expect = 5.6
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 215 gcctgcttctcctgcacc 232
|||||| |||||||||||
Sbjct: 372 gcctgcatctcctgcacc 355
>ISAzo7
Length = 1044
Score = 28.2 bits (14), Expect = 5.6
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 1 cggcgcccaccgggtcgc 18
||||| ||||||||||||
Sbjct: 792 cggcgtccaccgggtcgc 809
>ISFsp3
Length = 2209
Score = 28.2 bits (14), Expect = 5.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 55 caccggcgccggca 68
||||||||||||||
Sbjct: 300 caccggcgccggca 287
>ISBcen17
Length = 1734
Score = 28.2 bits (14), Expect = 5.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 172 gctggccagtttgc 185
||||||||||||||
Sbjct: 1280 gctggccagtttgc 1267
>ISRsp1
Length = 3481
Score = 28.2 bits (14), Expect = 5.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 164 gacgcggtgctggc 177
||||||||||||||
Sbjct: 3396 gacgcggtgctggc 3383
>ISMav1
Length = 2536
Score = 28.2 bits (14), Expect = 5.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 64 cggcaagatcatcg 77
||||||||||||||
Sbjct: 2165 cggcaagatcatcg 2178
>IS50R
Length = 1534
Score = 28.2 bits (14), Expect = 5.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 165 acgcggtgctggcc 178
||||||||||||||
Sbjct: 931 acgcggtgctggcc 944
>IS1612
Length = 2532
Score = 28.2 bits (14), Expect = 5.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 64 cggcaagatcatcg 77
||||||||||||||
Sbjct: 2161 cggcaagatcatcg 2174
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_127_length_284_cov_0.78744_ID_5424
(284 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISSlgl1 | IS256 | IS1249 | Slackia heliotrinireducens | 34 | 0.091 |
| ISPa43 | Tn3 | Pseudomonas aeruginosa | 32 | 0.36 | |
| ISNamo21 | IS200/IS605 | IS1341 | Natronomonas moolapensis | 30 | 1.4 |
| ISRle12 | IS256 | Rhizobium leguminosarum | 30 | 1.4 | |
| ISNha9 | IS256 | Nitrobacter hamburgensis | 30 | 1.4 | |
| ISArsp6 | Tn3 | Arthrobacter sp. | 30 | 1.4 | |
| ISCARN103 | IS1182 | Metagenomic data from CARNOULES | 30 | 1.4 | |
| Tn3 | Tn3 | Salmonella wien | 30 | 1.4 | |
| ISNGR8 | IS256 | - | Rhizobium sp | 30 | 1.4 |
| ISMno21 | IS630 | Methylobacterium nodulans | 28 | 5.6 | |
| ISAs21 | IS66 | ISBst12 | Aeromonas salmonicida | 28 | 5.6 |
| ISSen6 | IS200/IS605 | Salmonella enterica | 28 | 5.6 | |
| ISNpe19 | IS5 | Natrinema pellirubrum | 28 | 5.6 | |
| ISCasp2 | ISKra4 | ISKra4 | Calothrix sp. | 28 | 5.6 |
| ISCph1 | IS630 | Chlorobium phaeobacteroides | 28 | 5.6 | |
| ISRhru6 | IS5 | IS1031 | Rhodospirillum rubrum | 28 | 5.6 |
| ISMsm12 | IS1380 | Mycobacterium smegmatis | 28 | 5.6 | |
| ISMex38 | Tn3 | Methylobacterium extorquens | 28 | 5.6 | |
| ISCARN12 | IS200/IS605 | IS1341 | Metagenomic data from CARNOULES | 28 | 5.6 |
| ISAfe11 | IS607 | Acidithiobacillus ferrooxidans | 28 | 5.6 | |
| ISAau4 | Tn3 | Arthrobacter aurescens | 28 | 5.6 | |
| ISUnCu3 | IS21 | Uncultured bacterium | 28 | 5.6 | |
| ISAzo8 | ISAs1 | Azoarcus sp. | 28 | 5.6 | |
| ISFsp9 | IS701 | Frankia sp. | 28 | 5.6 | |
| ISMca7 | IS5 | IS5 | Methylococcus capsulatus | 28 | 5.6 |
| ISRba4 | IS701 | Rhodopirellula baltica | 28 | 5.6 | |
| ISAzvi2 | IS110 | IS1111 | Azotobacter vinelandii | 28 | 5.6 |
| ISPpu7 | IS21 | - | Pseudomonas putida | 28 | 5.6 |
| IS3502 | IS3 | IS51 | Corynebacterium jeikeium | 28 | 5.6 |
| IS220 | IS1380 | - | Mycobacterium fortuitum | 28 | 5.6 |
| IS1491 | IS21 | - | Pseudomonas alcaligenes | 28 | 5.6 |
| IS1249 | IS256 | IS1249 | Corynebacterium xerosis | 28 | 5.6 |
>ISSlgl1
Length = 1341
Score = 34.2 bits (17), Expect = 0.091
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 254 cgccctcggcggcgacc 270
|||||||||||||||||
Sbjct: 790 cgccctcggcggcgacc 806
>ISPa43
Length = 19903
Score = 32.2 bits (16), Expect = 0.36
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 262 gcggcgaccccggcct 277
||||||||||||||||
Sbjct: 16225 gcggcgaccccggcct 16210
>ISNamo21
Length = 1836
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 144 tacgtcggcgatctc 158
|||||||||||||||
Sbjct: 1223 tacgtcggcgatctc 1237
>ISRle12
Length = 1297
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 168 ttcatcacccgcagc 182
|||||||||||||||
Sbjct: 699 ttcatcacccgcagc 685
>ISNha9
Length = 1322
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 168 ttcatcacccgcagc 182
|||||||||||||||
Sbjct: 710 ttcatcacccgcagc 696
>ISArsp6
Length = 26712
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 175 cccgcagcgcccggc 189
|||||||||||||||
Sbjct: 8545 cccgcagcgcccggc 8559
Score = 28.2 bits (14), Expect = 5.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 268 accccggcctgcgc 281
||||||||||||||
Sbjct: 26315 accccggcctgcgc 26328
>ISCARN103
Length = 1410
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 154 atctctggcacaaat 168
|||||||||||||||
Sbjct: 710 atctctggcacaaat 724
>Tn3
Length = 4948
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 70 ccacggacatatcaa 84
|||||||||||||||
Sbjct: 4804 ccacggacatatcaa 4818
>ISNGR8
Length = 1298
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 213 catctcgaagacatc 227
|||||||||||||||
Sbjct: 422 catctcgaagacatc 436
>ISMno21
Length = 1162
Score = 28.2 bits (14), Expect = 5.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 181 gcgcccggcgcgac 194
||||||||||||||
Sbjct: 871 gcgcccggcgcgac 858
>ISAs21
Length = 1530
Score = 28.2 bits (14), Expect = 5.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 224 catcgagaaaaccg 237
||||||||||||||
Sbjct: 1462 catcgagaaaaccg 1475
>ISSen6
Length = 1818
Score = 28.2 bits (14), Expect = 5.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 185 ccggcgcgactacc 198
||||||||||||||
Sbjct: 1289 ccggcgcgactacc 1302
>ISNpe19
Length = 1063
Score = 28.2 bits (14), Expect = 5.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 215 tctcgaagacatcg 228
||||||||||||||
Sbjct: 401 tctcgaagacatcg 388
>ISCasp2
Length = 1773
Score = 28.2 bits (14), Expect = 5.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 19 acagaagcccaaac 32
||||||||||||||
Sbjct: 1029 acagaagcccaaac 1016
>ISCph1
Length = 1216
Score = 28.2 bits (14), Expect = 5.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 12 cacaatcacagaag 25
||||||||||||||
Sbjct: 1070 cacaatcacagaag 1083
>ISRhru6
Length = 941
Score = 28.2 bits (14), Expect = 5.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 119 caaaggtaagaagc 132
||||||||||||||
Sbjct: 504 caaaggtaagaagc 517
>ISMsm12
Length = 3256
Score = 28.2 bits (14), Expect = 5.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 235 ccgcaggcgtcctg 248
||||||||||||||
Sbjct: 2915 ccgcaggcgtcctg 2928
>ISMex38
Length = 3841
Score = 28.2 bits (14), Expect = 5.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 145 acgtcggcgatctc 158
||||||||||||||
Sbjct: 1934 acgtcggcgatctc 1921
>ISCARN12
Length = 1515
Score = 28.2 bits (14), Expect = 5.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 138 gaagaatacgtcgg 151
||||||||||||||
Sbjct: 1399 gaagaatacgtcgg 1386
>ISAfe11
Length = 2080
Score = 28.2 bits (14), Expect = 5.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 138 gaagaatacgtcgg 151
||||||||||||||
Sbjct: 1967 gaagaatacgtcgg 1954
>ISAau4
Length = 3898
Score = 28.2 bits (14), Expect = 5.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 268 accccggcctgcgc 281
||||||||||||||
Sbjct: 2158 accccggcctgcgc 2145
>ISUnCu3
Length = 2596
Score = 28.2 bits (14), Expect = 5.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 216 ctcgaagacatcga 229
||||||||||||||
Sbjct: 1946 ctcgaagacatcga 1959
>ISAzo8
Length = 1261
Score = 28.2 bits (14), Expect = 5.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 177 cgcagcgcccggcg 190
||||||||||||||
Sbjct: 178 cgcagcgcccggcg 191
>ISFsp9
Length = 1559
Score = 28.2 bits (14), Expect = 5.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 260 cggcggcgaccccg 273
||||||||||||||
Sbjct: 744 cggcggcgaccccg 757
>ISMca7
Length = 1172
Score = 28.2 bits (14), Expect = 5.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 266 cgaccccggcctgc 279
||||||||||||||
Sbjct: 781 cgaccccggcctgc 768
>ISRba4
Length = 1543
Score = 28.2 bits (14), Expect = 5.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 67 tgaccacggacata 80
||||||||||||||
Sbjct: 208 tgaccacggacata 195
>ISAzvi2
Length = 1396
Score = 28.2 bits (14), Expect = 5.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 176 ccgcagcgcccggc 189
||||||||||||||
Sbjct: 802 ccgcagcgcccggc 815
>ISPpu7
Length = 2598
Score = 28.2 bits (14), Expect = 5.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 216 ctcgaagacatcga 229
||||||||||||||
Sbjct: 1947 ctcgaagacatcga 1960
>IS3502
Length = 1328
Score = 28.2 bits (14), Expect = 5.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 14 caatcacagaagcc 27
||||||||||||||
Sbjct: 857 caatcacagaagcc 844
>IS220
Length = 3257
Score = 28.2 bits (14), Expect = 5.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 235 ccgcaggcgtcctg 248
||||||||||||||
Sbjct: 2916 ccgcaggcgtcctg 2929
>IS1491
Length = 2481
Score = 28.2 bits (14), Expect = 5.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 216 ctcgaagacatcga 229
||||||||||||||
Sbjct: 1877 ctcgaagacatcga 1890
>IS1249
Length = 1385
Score = 28.2 bits (14), Expect = 5.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 240 ggcgtcctgtttcg 253
||||||||||||||
Sbjct: 1269 ggcgtcctgtttcg 1256
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_128_length_284_cov_0.763285_ID_5426
(284 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISMno32 | IS1182 | Methylobacterium nodulans | 32 | 0.36 | |
| ISMex2 | IS481 | Methylobacterium extorquens | 32 | 0.36 | |
| ISBxe3 | IS481 | Burkholderia xenovorans | 32 | 0.36 | |
| ISAve1 | IS110 | IS1111 | Aeromonas veronii | 30 | 1.4 |
| ISAzs35 | IS110 | IS1111 | Azospirillum sp. | 30 | 1.4 |
| ISRhba5 | IS5 | IS903 | Rhodobacterales bacterium | 30 | 1.4 |
| ISArsp6 | Tn3 | Arthrobacter sp. | 30 | 1.4 | |
| ISNml2 | IS1380 | Nakamurella multipartita | 30 | 1.4 | |
| ISChy4 | IS21 | Carboxydothermus hydrogenoformans | 30 | 1.4 | |
| TnXo19 | Tn3 | Xanthomonas oryzae | 28 | 5.6 | |
| ISBlo17 | IS256 | IS1249 | Bifidobacterium longum | 28 | 5.6 |
| ISNma7 | IS630 | Natrialba magadii | 28 | 5.6 | |
| ISMdi9 | IS110 | IS1111 | Methylobacterium dichloromethanicum | 28 | 5.6 |
| ISMex1 | IS3 | IS407 | Methylobacterium extorquens | 28 | 5.6 |
| ISCARN60 | IS3 | IS3 | Metagenomic data from CARNOULES | 28 | 5.6 |
| ISAzo15 | IS66 | Azoarcus sp. | 28 | 5.6 | |
| ISSde13 | IS110 | Shewanella denitrificans | 28 | 5.6 | |
| ISGob3 | IS66 | ISBst12 | Gemmata obscuriglobus | 28 | 5.6 |
| ISCku6 | IS66 | ISBst12 | Candidatus Kuenenia stuttgartiensis | 28 | 5.6 |
| ISSpo9 | IS5 | IS903 | Silicibacter pomeroyi | 28 | 5.6 |
| IS3000 | Tn3 | - | Escherichia coli | 28 | 5.6 |
| IS1539 | IS607 | Mycobacterium tuberculosis | 28 | 5.6 | |
| IS1538 | IS607 | Mycobacterium tuberculosis | 28 | 5.6 | |
| IS1354 | IS256 | - | Methylobacterium dichloromethanicum | 28 | 5.6 |
| IS1295 | IS256 | - | Rhodococcus sp. | 28 | 5.6 |
>ISMno32
Length = 1538
Score = 32.2 bits (16), Expect = 0.36
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 172 gcacggcgcgggcggg 187
||||||||||||||||
Sbjct: 630 gcacggcgcgggcggg 615
>ISMex2
Length = 1031
Score = 32.2 bits (16), Expect = 0.36
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 110 gaactcccagccgatg 125
||||||||||||||||
Sbjct: 589 gaactcccagccgatg 574
>ISBxe3
Length = 1279
Score = 32.2 bits (16), Expect = 0.36
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 256 gcgtgcgtgccgggct 271
||||||||||||||||
Sbjct: 288 gcgtgcgtgccgggct 273
>ISAve1
Length = 1393
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 171 agcacggcgcgggcg 185
|||||||||||||||
Sbjct: 945 agcacggcgcgggcg 931
>ISAzs35
Length = 1524
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 125 gtcgccccagtcgac 139
|||||||||||||||
Sbjct: 1374 gtcgccccagtcgac 1388
>ISRhba5
Length = 1053
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 179 gcgggcgggcttggg 193
|||||||||||||||
Sbjct: 90 gcgggcgggcttggg 76
>ISArsp6
Length = 26712
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 234 acccggtccgtggtg 248
|||||||||||||||
Sbjct: 4555 acccggtccgtggtg 4569
>ISNml2
Length = 1689
Score = 30.2 bits (15), Expect = 1.4
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 70 cggaaatggtggtcgggtc 88
|||| ||||||||||||||
Sbjct: 1543 cggagatggtggtcgggtc 1525
>ISChy4
Length = 2172
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 126 tcgccccagtcgacc 140
|||||||||||||||
Sbjct: 482 tcgccccagtcgacc 468
>TnXo19
Length = 18767
Score = 28.2 bits (14), Expect = 5.6
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 115 cccagccgatgtcgcccc 132
||||||||||| ||||||
Sbjct: 9378 cccagccgatggcgcccc 9361
>ISBlo17
Length = 1352
Score = 28.2 bits (14), Expect = 5.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 255 agcgtgcgtgccgg 268
||||||||||||||
Sbjct: 396 agcgtgcgtgccgg 383
>ISNma7
Length = 1055
Score = 28.2 bits (14), Expect = 5.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 134 gtcgaccagtgtcg 147
||||||||||||||
Sbjct: 199 gtcgaccagtgtcg 186
>ISMdi9
Length = 1399
Score = 28.2 bits (14), Expect = 5.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 42 gtgggggcgctgat 55
||||||||||||||
Sbjct: 779 gtgggggcgctgat 792
>ISMex1
Length = 1200
Score = 28.2 bits (14), Expect = 5.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 37 ctcgtgtgggggcg 50
||||||||||||||
Sbjct: 1098 ctcgtgtgggggcg 1085
>ISCARN60
Length = 1257
Score = 28.2 bits (14), Expect = 5.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 74 aatggtggtcgggt 87
||||||||||||||
Sbjct: 831 aatggtggtcgggt 844
>ISAzo15
Length = 2441
Score = 28.2 bits (14), Expect = 5.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 119 gccgatgtcgcccc 132
||||||||||||||
Sbjct: 1850 gccgatgtcgcccc 1837
>ISSde13
Length = 1196
Score = 28.2 bits (14), Expect = 5.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 131 ccagtcgaccagtg 144
||||||||||||||
Sbjct: 395 ccagtcgaccagtg 382
>ISGob3
Length = 1597
Score = 28.2 bits (14), Expect = 5.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 172 gcacggcgcgggcg 185
||||||||||||||
Sbjct: 1175 gcacggcgcgggcg 1162
>ISCku6
Length = 2571
Score = 28.2 bits (14), Expect = 5.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 199 ggacgctcatgttt 212
||||||||||||||
Sbjct: 1236 ggacgctcatgttt 1223
>ISSpo9
Length = 1049
Score = 28.2 bits (14), Expect = 5.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 220 ccgtgttgccgtcc 233
||||||||||||||
Sbjct: 932 ccgtgttgccgtcc 945
>IS3000
Length = 3235
Score = 28.2 bits (14), Expect = 5.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 194 ggccaggacgctca 207
||||||||||||||
Sbjct: 1433 ggccaggacgctca 1446
>IS1539
Length = 2092
Score = 28.2 bits (14), Expect = 5.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 114 tcccagccgatgtc 127
||||||||||||||
Sbjct: 1828 tcccagccgatgtc 1815
>IS1538
Length = 2090
Score = 28.2 bits (14), Expect = 5.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 114 tcccagccgatgtc 127
||||||||||||||
Sbjct: 1826 tcccagccgatgtc 1813
>IS1354
Length = 1431
Score = 28.2 bits (14), Expect = 5.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 219 accgtgttgccgtc 232
||||||||||||||
Sbjct: 1226 accgtgttgccgtc 1239
>IS1295
Length = 1456
Score = 28.2 bits (14), Expect = 5.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 202 cgctcatgttttcg 215
||||||||||||||
Sbjct: 210 cgctcatgttttcg 197
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_129_length_283_cov_1.06311_ID_5428
(283 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISAzs34 | ISNCY | IS892 | Azospirillum sp. | 34 | 0.090 |
| ISAtu7 | IS110 | Agrobacterium tumefaciens | 32 | 0.36 | |
| ISCARN63 | ISNCY | IS1202 | Metagenomic data from CARNOULES | 32 | 0.36 |
| ISAzo15 | IS66 | Azoarcus sp. | 32 | 0.36 | |
| ISAtu3 | IS3 | IS150 | Agrobacterium tumefaciens | 32 | 0.36 |
| ISPa46 | IS256 | Pseudomonas aeruginosa | 30 | 1.4 | |
| ISRhru4 | IS256 | Rhodospirillum rubrum | 30 | 1.4 | |
| ISPfr21 | IS481 | Propionibacterium freudenreichii | 30 | 1.4 | |
| ISBma2 | IS1182 | Burkholderia mallei | 30 | 1.4 | |
| ISMex10 | ISL3 | Methylobacterium extorquens | 30 | 1.4 | |
| ISThsp7 | IS1634 | Thiomonas sp. | 30 | 1.4 | |
| ISAnsp3 | IS66 | Anaeromyxobacter sp. | 30 | 1.4 | |
| ISAeh1 | IS66 | Alkalilimnicola ehrlichei | 30 | 1.4 | |
| ISLxx3 | IS21 | Leifsonia xyli | 30 | 1.4 | |
| ISPpu14 | IS66 | Pseudomonas putida | 30 | 1.4 | |
| TnXo19 | Tn3 | Xanthomonas oryzae | 28 | 5.6 | |
| ISAeme21 | IS481 | Aeromonas media | 28 | 5.6 | |
| ISMex45 | IS200/IS605 | IS1341 | Methylobacterium extorquens | 28 | 5.6 |
| ISMex44 | IS200/IS605 | IS1341 | Methylobacterium extorquens | 28 | 5.6 |
| ISMlu11 | IS256 | Micrococcus luteus | 28 | 5.6 | |
| ISPeth4 | IS256 | Pelotomaculum thermopropionicum | 28 | 5.6 | |
| ISAzs36 | IS481 | Azospirillum sp. | 28 | 5.6 | |
| ISGau1 | IS3 | IS3 | Gemmatimonas aurantiaca | 28 | 5.6 |
| ISMno33 | IS1182 | Methylobacterium nodulans | 28 | 5.6 | |
| ISMno27 | IS6 | Methylobacterium nodulans | 28 | 5.6 | |
| ISMtsp13 | IS256 | Methylobacterium sp. | 28 | 5.6 | |
| ISArsp6 | Tn3 | Arthrobacter sp. | 28 | 5.6 | |
| ISAar30 | ISL3 | Arthrobacter arilaitensis | 28 | 5.6 | |
| ISTro1 | IS1380 | Thiocapsa roseopersicina | 28 | 5.6 | |
| ISDeac1 | IS1380 | Delftia acidovorans | 28 | 5.6 | |
| ISApr7 | IS1595 | ISNwi1 | Alpha proteobacterium | 28 | 5.6 |
| ISNisp6 | IS66 | Nitrobacter sp. | 28 | 5.6 | |
| ISBrsp6 | IS66 | Bradyrhizobium sp. | 28 | 5.6 | |
| ISSer1 | IS110 | Saccharopolyspora erythraea | 28 | 5.6 | |
| ISDpr1 | IS4 | IS4Sa | delta proteobacterium | 28 | 5.6 |
| ISPsy7 | IS110 | IS1111 | Pseudomonas syringae | 28 | 5.6 |
| ISXc6 | IS5 | IS5 | Xanthomonas campestris | 28 | 5.6 |
| ISSco2 | IS481 | Streptomyces coelicolor | 28 | 5.6 | |
| ISH7B | ISNCY | Halobacterium sp. | 28 | 5.6 | |
| ISH7A | ISNCY | Halobacterium sp. | 28 | 5.6 | |
| IS66 | IS66 | Agrobacterium tumefaciens | 28 | 5.6 | |
| IS4811 | IS5 | IS1031 | Streptomyces lividans | 28 | 5.6 |
| IS1478 | IS5 | IS5 | Xanthomonas campestris | 28 | 5.6 |
| IS1356 | IS256 | - | Burkholderia cepacia | 28 | 5.6 |
>ISAzs34
Length = 1650
Score = 34.2 bits (17), Expect = 0.090
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 173 cgccgggcaacgcctcg 189
|||||||||||||||||
Sbjct: 743 cgccgggcaacgcctcg 727
>ISAtu7
Length = 1472
Score = 32.2 bits (16), Expect = 0.36
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 56 cgcgggtgcgccagtc 71
||||||||||||||||
Sbjct: 993 cgcgggtgcgccagtc 1008
>ISCARN63
Length = 1387
Score = 32.2 bits (16), Expect = 0.36
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 211 tccacgcgcgcgccgg 226
||||||||||||||||
Sbjct: 1129 tccacgcgcgcgccgg 1114
>ISAzo15
Length = 2441
Score = 32.2 bits (16), Expect = 0.36
Identities = 22/24 (91%)
Strand = Plus / Plus
Query: 219 cgcgccggcggccgacgtcgcccg 242
||||| |||||||||||| |||||
Sbjct: 908 cgcgcaggcggccgacgtggcccg 931
>ISAtu3
Length = 1597
Score = 32.2 bits (16), Expect = 0.36
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 27 cagcagatcgacgccc 42
||||||||||||||||
Sbjct: 692 cagcagatcgacgccc 677
>ISPa46
Length = 1329
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 85 atgtcctgcacgcca 99
|||||||||||||||
Sbjct: 763 atgtcctgcacgcca 749
>ISRhru4
Length = 1411
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 113 cgccctgcgccatca 127
|||||||||||||||
Sbjct: 43 cgccctgcgccatca 29
>ISPfr21
Length = 2632
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 222 gccggcggccgacgt 236
|||||||||||||||
Sbjct: 2125 gccggcggccgacgt 2111
>ISBma2
Length = 1573
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 73 agacgcagcagcatg 87
|||||||||||||||
Sbjct: 1460 agacgcagcagcatg 1446
>ISMex10
Length = 1754
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 218 gcgcgccggcggccg 232
|||||||||||||||
Sbjct: 734 gcgcgccggcggccg 748
>ISThsp7
Length = 1920
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 180 caacgcctcgatgtt 194
|||||||||||||||
Sbjct: 1002 caacgcctcgatgtt 988
>ISAnsp3
Length = 2518
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 167 cgcggccgccgggca 181
|||||||||||||||
Sbjct: 1835 cgcggccgccgggca 1821
>ISAeh1
Length = 2320
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 162 ccgcacgcggccgcc 176
|||||||||||||||
Sbjct: 1035 ccgcacgcggccgcc 1021
>ISLxx3
Length = 2637
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 227 cggccgacgtcgccc 241
|||||||||||||||
Sbjct: 900 cggccgacgtcgccc 886
>ISPpu14
Length = 2383
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 106 tcgaaatcgccctgc 120
|||||||||||||||
Sbjct: 959 tcgaaatcgccctgc 973
>TnXo19
Length = 18767
Score = 28.2 bits (14), Expect = 5.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 96 gccatcgccatcga 109
||||||||||||||
Sbjct: 9730 gccatcgccatcga 9743
>ISAeme21
Length = 1038
Score = 28.2 bits (14), Expect = 5.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 154 gtcagtacccgcac 167
||||||||||||||
Sbjct: 198 gtcagtacccgcac 211
>ISMex45
Length = 1270
Score = 28.2 bits (14), Expect = 5.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 229 gccgacgtcgcccg 242
||||||||||||||
Sbjct: 651 gccgacgtcgcccg 638
>ISMex44
Length = 1270
Score = 28.2 bits (14), Expect = 5.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 229 gccgacgtcgcccg 242
||||||||||||||
Sbjct: 651 gccgacgtcgcccg 638
>ISMlu11
Length = 1434
Score = 28.2 bits (14), Expect = 5.6
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 81 cagcatgtcctgcacgcc 98
||||| ||||||||||||
Sbjct: 801 cagcacgtcctgcacgcc 784
>ISPeth4
Length = 1488
Score = 28.2 bits (14), Expect = 5.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 85 atgtcctgcacgcc 98
||||||||||||||
Sbjct: 740 atgtcctgcacgcc 727
>ISAzs36
Length = 2622
Score = 28.2 bits (14), Expect = 5.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 217 cgcgcgccggcggc 230
||||||||||||||
Sbjct: 441 cgcgcgccggcggc 454
>ISGau1
Length = 1276
Score = 28.2 bits (14), Expect = 5.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 52 gcgtcgcgggtgcg 65
||||||||||||||
Sbjct: 456 gcgtcgcgggtgcg 443
>ISMno33
Length = 1767
Score = 28.2 bits (14), Expect = 5.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 75 acgcagcagcatgt 88
||||||||||||||
Sbjct: 170 acgcagcagcatgt 157
>ISMno27
Length = 893
Score = 28.2 bits (14), Expect = 5.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 48 gaaggcgtcgcggg 61
||||||||||||||
Sbjct: 140 gaaggcgtcgcggg 127
>ISMtsp13
Length = 1428
Score = 28.2 bits (14), Expect = 5.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 199 ccgggcgcatcgtc 212
||||||||||||||
Sbjct: 670 ccgggcgcatcgtc 683
>ISArsp6
Length = 26712
Score = 28.2 bits (14), Expect = 5.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 1 ccgcccgccgagcg 14
||||||||||||||
Sbjct: 10304 ccgcccgccgagcg 10317
>ISAar30
Length = 1435
Score = 28.2 bits (14), Expect = 5.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 251 ccacggggcacgcc 264
||||||||||||||
Sbjct: 294 ccacggggcacgcc 281
>ISTro1
Length = 1735
Score = 28.2 bits (14), Expect = 5.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 262 gccgacgcccgcaa 275
||||||||||||||
Sbjct: 918 gccgacgcccgcaa 931
>ISDeac1
Length = 1736
Score = 28.2 bits (14), Expect = 5.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 26 gcagcagatcgacg 39
||||||||||||||
Sbjct: 312 gcagcagatcgacg 299
>ISApr7
Length = 3923
Score = 28.2 bits (14), Expect = 5.6
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 174 gccgggcaacgcctcgat 191
||||||||||| ||||||
Sbjct: 3014 gccgggcaacggctcgat 3031
>ISNisp6
Length = 2489
Score = 28.2 bits (14), Expect = 5.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 63 gcgccagtcgagac 76
||||||||||||||
Sbjct: 825 gcgccagtcgagac 812
>ISBrsp6
Length = 3112
Score = 28.2 bits (14), Expect = 5.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 211 tccacgcgcgcgcc 224
||||||||||||||
Sbjct: 438 tccacgcgcgcgcc 425
>ISSer1
Length = 1447
Score = 28.2 bits (14), Expect = 5.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 87 gtcctgcacgccat 100
||||||||||||||
Sbjct: 1362 gtcctgcacgccat 1375
>ISDpr1
Length = 1325
Score = 28.2 bits (14), Expect = 5.6
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 126 caaagtgtagacactgtc 143
||||||||||| ||||||
Sbjct: 1192 caaagtgtagagactgtc 1175
>ISPsy7
Length = 1348
Score = 28.2 bits (14), Expect = 5.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 127 aaagtgtagacact 140
||||||||||||||
Sbjct: 48 aaagtgtagacact 35
>ISXc6
Length = 1500
Score = 28.2 bits (14), Expect = 5.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 89 cctgcacgccatcg 102
||||||||||||||
Sbjct: 1192 cctgcacgccatcg 1179
>ISSco2
Length = 1964
Score = 28.2 bits (14), Expect = 5.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 91 tgcacgccatcgcc 104
||||||||||||||
Sbjct: 1558 tgcacgccatcgcc 1571
>ISH7B
Length = 2924
Score = 28.2 bits (14), Expect = 5.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 235 gtcgcccgaccacc 248
||||||||||||||
Sbjct: 2550 gtcgcccgaccacc 2563
>ISH7A
Length = 3302
Score = 28.2 bits (14), Expect = 5.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 235 gtcgcccgaccacc 248
||||||||||||||
Sbjct: 2929 gtcgcccgaccacc 2942
>IS66
Length = 2556
Score = 28.2 bits (14), Expect = 5.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 225 ggcggccgacgtcg 238
||||||||||||||
Sbjct: 808 ggcggccgacgtcg 821
>IS4811
Length = 5396
Score = 28.2 bits (14), Expect = 5.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 143 cgtcggtccgggtc 156
||||||||||||||
Sbjct: 1757 cgtcggtccgggtc 1744
>IS1478
Length = 1207
Score = 28.2 bits (14), Expect = 5.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 89 cctgcacgccatcg 102
||||||||||||||
Sbjct: 898 cctgcacgccatcg 885
>IS1356
Length = 1354
Score = 28.2 bits (14), Expect = 5.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 85 atgtcctgcacgcc 98
||||||||||||||
Sbjct: 781 atgtcctgcacgcc 768
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_130_length_283_cov_1.41748_ID_5430
(283 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISAzs1 | IS701 | Azospirillum sp. | 32 | 0.36 | |
| ISAar33 | IS21 | Arthrobacter arilaitensis | 30 | 1.4 | |
| ISAnsp5 | IS21 | Anaeromyxobacter sp. | 30 | 1.4 | |
| ISAnsp4 | IS21 | Anaeromyxobacter sp. | 30 | 1.4 | |
| ISCARN56 | IS607 | Metagenomic data from CARNOULES | 30 | 1.4 | |
| ISRso20 | IS3 | IS3 | Ralstonia solanacearum | 30 | 1.4 |
| ISBxe2 | IS3 | IS3 | Burkholderia xenovorans | 30 | 1.4 |
| ISRasp1 | IS3 | IS3 | Ralstonia sp. | 30 | 1.4 |
| ISBxe1 | IS3 | IS3 | Burkholderia xenovorans | 30 | 1.4 |
| ISSoc9 | IS200/IS605 | IS1341 | Synechococcus sp | 28 | 5.6 |
| ISHasp2 | IS200/IS605 | IS1341 | Halobacterium sp. | 28 | 5.6 |
| ISSri1 | ISKra4 | ISKra4 | Streptomyces rimosus | 28 | 5.6 |
| ISHvo3 | IS5 | ISH1 | Haloferax volcanii | 28 | 5.6 |
| ISPa40 | Tn3 | Pseudomonas aeruginosa | 28 | 5.6 | |
| ISApr12 | IS5 | Alpha proteobacterium | 28 | 5.6 | |
| ISCap1 | ISAzo13 | Candidatus Accumulibacter phosphatis | 28 | 5.6 | |
| ISMpo10 | Tn3 | Methylobacterium populi | 28 | 5.6 | |
| ISPfr20 | ISL3 | Propionibacterium freudenreichii | 28 | 5.6 | |
| ISHwa3 | IS5 | ISH1 | Haloquadratum walsbyi | 28 | 5.6 |
| ISAar21 | IS4 | IS4 | Arthrobacter arilaitensis | 28 | 5.6 |
| ISCARN116 | IS3 | IS407 | Metagenomic data from CARNOULES | 28 | 5.6 |
| ISAnsp8 | IS3 | IS407 | Anaeromyxobacter sp. | 28 | 5.6 |
| ISCARN83 | IS1595 | ISNwi1 | Metagenomic data from CARNOULES | 28 | 5.6 |
| ISCARN59 | IS256 | Metagenomic data from CARNOULES | 28 | 5.6 | |
| ISCARN24 | IS21 | Metagenomic data from CARNOULES | 28 | 5.6 | |
| ISMno2 | IS66 | ISBst12 | Methylobacterium nodulans | 28 | 5.6 |
| ISGob4 | IS66 | ISBst12 | Gemmata obscuriglobus | 28 | 5.6 |
| ISAli5 | IS3 | IS150 | Azospirillum lipoferum | 28 | 5.6 |
| ISBxe4 | IS481 | Burkholderia xenovorans | 28 | 5.6 | |
| ISCysp1 | IS1 | Cyanothece sp. | 28 | 5.6 | |
| ISSav1 | IS4 | IS4 | Streptomyces avermitilis | 28 | 5.6 |
| ISBcen14 | IS66 | Burkholderia cenocepacia | 28 | 5.6 | |
| IS882 | Tn3 | Ralstonia eutropha | 28 | 5.6 | |
| ISGsu4 | IS110 | Geobacter sulfurreducens | 28 | 5.6 | |
| ISBlo3 | IS3 | Bifidobacterium longum | 28 | 5.6 | |
| ISMt2 | IS21 | - | Mycobacterium tuberculosis | 28 | 5.6 |
| IS1420 | IS5 | IS903 | Ralstonia solanacearum | 28 | 5.6 |
>ISAzs1
Length = 1508
Score = 32.2 bits (16), Expect = 0.36
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 47 caccaaggcgtcgagc 62
||||||||||||||||
Sbjct: 1137 caccaaggcgtcgagc 1122
>ISAar33
Length = 2628
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 253 gcacgcccaacggct 267
|||||||||||||||
Sbjct: 2182 gcacgcccaacggct 2168
>ISAnsp5
Length = 2192
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 102 gcctcgaccatcggc 116
|||||||||||||||
Sbjct: 133 gcctcgaccatcggc 119
>ISAnsp4
Length = 2195
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 102 gcctcgaccatcggc 116
|||||||||||||||
Sbjct: 136 gcctcgaccatcggc 122
>ISCARN56
Length = 1894
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 266 ctgcgcctcgtgccg 280
|||||||||||||||
Sbjct: 643 ctgcgcctcgtgccg 629
>ISRso20
Length = 1287
Score = 30.2 bits (15), Expect = 1.4
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 154 tgtgcggctgcaccgacca 172
|||||||||||| ||||||
Sbjct: 864 tgtgcggctgcatcgacca 846
>ISBxe2
Length = 1287
Score = 30.2 bits (15), Expect = 1.4
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 154 tgtgcggctgcaccgacca 172
|||||||||||| ||||||
Sbjct: 864 tgtgcggctgcatcgacca 846
>ISRasp1
Length = 1275
Score = 30.2 bits (15), Expect = 1.4
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 154 tgtgcggctgcaccgacca 172
|||||||||||| ||||||
Sbjct: 852 tgtgcggctgcatcgacca 834
>ISBxe1
Length = 1282
Score = 30.2 bits (15), Expect = 1.4
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 154 tgtgcggctgcaccgacca 172
|||||||||||| ||||||
Sbjct: 858 tgtgcggctgcatcgacca 840
>ISSoc9
Length = 1514
Score = 28.2 bits (14), Expect = 5.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 268 gcgcctcgtgccgc 281
||||||||||||||
Sbjct: 765 gcgcctcgtgccgc 752
>ISHasp2
Length = 1671
Score = 28.2 bits (14), Expect = 5.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 207 cacaagctgctgtc 220
||||||||||||||
Sbjct: 584 cacaagctgctgtc 597
>ISSri1
Length = 2269
Score = 28.2 bits (14), Expect = 5.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 80 cggcctggtcgaac 93
||||||||||||||
Sbjct: 1165 cggcctggtcgaac 1152
>ISHvo3
Length = 941
Score = 28.2 bits (14), Expect = 5.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 173 ctcgcacggcgaag 186
||||||||||||||
Sbjct: 828 ctcgcacggcgaag 815
>ISPa40
Length = 6592
Score = 28.2 bits (14), Expect = 5.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 112 tcggcggcgcctac 125
||||||||||||||
Sbjct: 878 tcggcggcgcctac 865
>ISApr12
Length = 1524
Score = 28.2 bits (14), Expect = 5.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 28 tggacgaggtgcgc 41
||||||||||||||
Sbjct: 1398 tggacgaggtgcgc 1411
>ISCap1
Length = 1311
Score = 28.2 bits (14), Expect = 5.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 47 caccaaggcgtcga 60
||||||||||||||
Sbjct: 354 caccaaggcgtcga 341
>ISMpo10
Length = 4911
Score = 28.2 bits (14), Expect = 5.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 26 gctggacgaggtgc 39
||||||||||||||
Sbjct: 3930 gctggacgaggtgc 3917
>ISPfr20
Length = 1505
Score = 28.2 bits (14), Expect = 5.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 27 ctggacgaggtgcg 40
||||||||||||||
Sbjct: 966 ctggacgaggtgcg 979
>ISHwa3
Length = 940
Score = 28.2 bits (14), Expect = 5.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 173 ctcgcacggcgaag 186
||||||||||||||
Sbjct: 828 ctcgcacggcgaag 815
>ISAar21
Length = 1396
Score = 28.2 bits (14), Expect = 5.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 82 gcctggtcgaacag 95
||||||||||||||
Sbjct: 395 gcctggtcgaacag 382
>ISCARN116
Length = 1260
Score = 28.2 bits (14), Expect = 5.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 255 acgcccaacggctg 268
||||||||||||||
Sbjct: 653 acgcccaacggctg 640
>ISAnsp8
Length = 1225
Score = 28.2 bits (14), Expect = 5.6
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 266 ctgcgcctcgtgccgccc 283
|||||| |||||||||||
Sbjct: 655 ctgcgcgtcgtgccgccc 672
>ISCARN83
Length = 2369
Score = 28.2 bits (14), Expect = 5.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 132 gccgactccaacaa 145
||||||||||||||
Sbjct: 847 gccgactccaacaa 860
>ISCARN59
Length = 1360
Score = 28.2 bits (14), Expect = 5.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 254 cacgcccaacggct 267
||||||||||||||
Sbjct: 684 cacgcccaacggct 671
>ISCARN24
Length = 2778
Score = 28.2 bits (14), Expect = 5.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 224 tcaggcggtgatgg 237
||||||||||||||
Sbjct: 2466 tcaggcggtgatgg 2453
>ISMno2
Length = 1419
Score = 28.2 bits (14), Expect = 5.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 28 tggacgaggtgcgc 41
||||||||||||||
Sbjct: 207 tggacgaggtgcgc 194
>ISGob4
Length = 1576
Score = 28.2 bits (14), Expect = 5.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 269 cgcctcgtgccgcc 282
||||||||||||||
Sbjct: 1399 cgcctcgtgccgcc 1412
>ISAli5
Length = 1266
Score = 28.2 bits (14), Expect = 5.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 227 ggcggtgatggact 240
||||||||||||||
Sbjct: 776 ggcggtgatggact 789
>ISBxe4
Length = 1090
Score = 28.2 bits (14), Expect = 5.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 32 cgaggtgcgcaagc 45
||||||||||||||
Sbjct: 548 cgaggtgcgcaagc 561
>ISCysp1
Length = 963
Score = 28.2 bits (14), Expect = 5.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 155 gtgcggctgcaccg 168
||||||||||||||
Sbjct: 733 gtgcggctgcaccg 720
>ISSav1
Length = 1776
Score = 28.2 bits (14), Expect = 5.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 101 ggcctcgaccatcg 114
||||||||||||||
Sbjct: 1217 ggcctcgaccatcg 1204
>ISBcen14
Length = 2516
Score = 28.2 bits (14), Expect = 5.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 110 catcggcggcgcct 123
||||||||||||||
Sbjct: 1142 catcggcggcgcct 1129
>IS882
Length = 3363
Score = 28.2 bits (14), Expect = 5.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 90 gaacagatcctggc 103
||||||||||||||
Sbjct: 1075 gaacagatcctggc 1062
>ISGsu4
Length = 1640
Score = 28.2 bits (14), Expect = 5.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 61 gctcgtgtggctcc 74
||||||||||||||
Sbjct: 1183 gctcgtgtggctcc 1170
>ISBlo3
Length = 1480
Score = 28.2 bits (14), Expect = 5.6
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 253 gcacgcccaacggctgcg 270
||||||||||||| ||||
Sbjct: 731 gcacgcccaacgggtgcg 748
>ISMt2
Length = 2645
Score = 28.2 bits (14), Expect = 5.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 257 gcccaacggctgcg 270
||||||||||||||
Sbjct: 477 gcccaacggctgcg 490
Score = 28.2 bits (14), Expect = 5.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 40 gcaagcacaccaag 53
||||||||||||||
Sbjct: 767 gcaagcacaccaag 754
>IS1420
Length = 1131
Score = 28.2 bits (14), Expect = 5.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 34 aggtgcgcaagcac 47
||||||||||||||
Sbjct: 542 aggtgcgcaagcac 555
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_131_length_281_cov_1.06863_ID_5432
(281 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISAeme22 | IS4 | IS50 | Aeromonas media | 32 | 0.35 |
| ISSpwi1 | IS3 | IS407 | Sphingomonas wittichii | 32 | 0.35 |
| IS50R | IS4 | IS50 | Escherichia coli | 32 | 0.35 |
| ISGrh1 | ISNCY | ISDol1 | Gordonia rhizosphera | 30 | 1.4 |
| TnXo19 | Tn3 | Xanthomonas oryzae | 30 | 1.4 | |
| ISRssp6 | ISKra4 | ISAzba1 | Roseovarius sp. | 30 | 1.4 |
| ISAzs29 | Tn3 | Azospirillum sp. | 30 | 1.4 | |
| ISStsp4 | IS5 | ISL2 | Streptomyces sp. | 30 | 1.4 |
| ISMra4 | IS3 | IS3 | Methylobacterium radiotolerans | 30 | 1.4 |
| ISMex13 | IS21 | Methylobacterium extorquens | 30 | 1.4 | |
| ISGur8 | IS21 | Geobacter uraniumreducens | 30 | 1.4 | |
| ISAav4 | IS3 | IS3 | Acidovorax avenae | 30 | 1.4 |
| ISMca5 | IS256 | Methylococcus capsulatus | 30 | 1.4 | |
| ISMyin1 | ISNCY | ISDol1 | Mycobacterium indicus | 28 | 5.5 |
| TnAs3 | Tn3 | Aeromonas salmonicida | 28 | 5.5 | |
| ISAeme5 | IS66 | Aeromonas media | 28 | 5.5 | |
| ISAs22 | IS3 | IS407 | Aeromonas salmonicida | 28 | 5.5 |
| ISNamo17 | IS200/IS605 | IS605 | Natronomonas moolapensis | 28 | 5.5 |
| ISHmu6 | IS200/IS605 | Halomicrobium mukohataei | 28 | 5.5 | |
| ISH35 | IS200/IS605 | Halobacterium salinarum | 28 | 5.5 | |
| ISNpe10 | IS200/IS605 | Natrinema pellirubrum | 28 | 5.5 | |
| ISLefe1 | IS1380 | Leptospirillum ferrooxidans | 28 | 5.5 | |
| ISLfe1 | ISKra4 | ISKra4 | Leptospirillum ferrodiazotrophum | 28 | 5.5 |
| ISTni2 | IS481 | Thioalkalivibrio nitratireducens | 28 | 5.5 | |
| ISPa43 | Tn3 | Pseudomonas aeruginosa | 28 | 5.5 | |
| ISRso21 | ISL3 | Ralstonia solanacearum | 28 | 5.5 | |
| ISStu1 | IS5 | ISL2 | Streptomyces turgidiscabies | 28 | 5.5 |
| ISSro1 | IS5 | ISL2 | Streptomyces roseosporus | 28 | 5.5 |
| ISApr13 | IS5 | Alpha proteobacterium | 28 | 5.5 | |
| ISRsp17 | ISNCY | ISDol1 | Rhizobium sp. | 28 | 5.5 |
| ISRle10 | ISNCY | ISDol1 | Rhizobium leguminosarum | 28 | 5.5 |
| ISMpo8 | IS5 | IS427 | Methylobacterium populi | 28 | 5.5 |
| ISBli5 | IS1380 | Brevibacterium linens | 28 | 5.5 | |
| ISPa33 | IS1380 | Pseudomonas aeruginosa | 28 | 5.5 | |
| ISMdi24 | IS5 | IS427 | Methylobacterium dichloromethanicum | 28 | 5.5 |
| ISThsp9 | Tn3 | Thiomonas sp. | 28 | 5.5 | |
| ISBj7_B | IS66 | Bradyrhizobium japonicum | 28 | 5.5 | |
| ISMno3 | IS66 | ISBst12 | Methylobacterium nodulans | 28 | 5.5 |
| ISAeh1 | IS66 | Alkalilimnicola ehrlichei | 28 | 5.5 | |
| ISAli8 | IS110 | Azospirillum lipoferum | 28 | 5.5 | |
| ISRhru1 | IS1595 | ISSod11 | Rhodospirillum rubrum | 28 | 5.5 |
| ISNisp1 | IS3 | IS3 | Nitrobacter sp. | 28 | 5.5 |
| ISMca2 | IS3 | IS3 | Methylococcus capsulatus | 28 | 5.5 |
| ISFsp6 | IS4 | IS4 | Frankia sp. | 28 | 5.5 |
| ISCsp1 | IS256 | Comamonas sp | 28 | 5.5 | |
| ISPsy14 | IS21 | Pseudomonas syringae | 28 | 5.5 | |
| ISRso9 | IS5 | IS5 | Ralstonia solanacearum | 28 | 5.5 |
| ISPa42 | Tn3 | Pseudomonas aeruginosa | 28 | 5.5 | |
| IS408 | IS21 | - | Burkholderia cepacia | 28 | 5.5 |
| IS2112 | IS110 | - | Rhodococcus rhodochrous | 28 | 5.5 |
| IS1536 | IS607 | Mycobacterium tuberculosis | 28 | 5.5 | |
| IS1420 | IS5 | IS903 | Ralstonia solanacearum | 28 | 5.5 |
| IS116 | IS110 | - | Streptomyces clavuligerus | 28 | 5.5 |
| IS1001 | ISL3 | - | Bordetella parapertussis | 28 | 5.5 |
>ISAeme22
Length = 1534
Score = 32.2 bits (16), Expect = 0.35
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 86 ttgccagctggggcgc 101
||||||||||||||||
Sbjct: 1420 ttgccagctggggcgc 1435
>ISSpwi1
Length = 1269
Score = 32.2 bits (16), Expect = 0.35
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 219 ccagcgccgccagcac 234
||||||||||||||||
Sbjct: 846 ccagcgccgccagcac 831
>IS50R
Length = 1534
Score = 32.2 bits (16), Expect = 0.35
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 86 ttgccagctggggcgc 101
||||||||||||||||
Sbjct: 1420 ttgccagctggggcgc 1435
>ISGrh1
Length = 1673
Score = 30.2 bits (15), Expect = 1.4
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 244 cagcacgccgagggcgatg 262
|||| ||||||||||||||
Sbjct: 1112 cagctcgccgagggcgatg 1130
>TnXo19
Length = 18767
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 134 gatgatgccggcgat 148
|||||||||||||||
Sbjct: 12619 gatgatgccggcgat 12605
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 204 cggccagcaggcgt 217
||||||||||||||
Sbjct: 6164 cggccagcaggcgt 6177
>ISRssp6
Length = 1454
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 158 ccagcgcacggtgag 172
|||||||||||||||
Sbjct: 1094 ccagcgcacggtgag 1080
>ISAzs29
Length = 3897
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 185 gtccatggcgcgcct 199
|||||||||||||||
Sbjct: 1529 gtccatggcgcgcct 1543
>ISStsp4
Length = 902
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 202 gccggccagcaggcg 216
|||||||||||||||
Sbjct: 717 gccggccagcaggcg 731
>ISMra4
Length = 1237
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 5 gcgaaaaaagccgtg 19
|||||||||||||||
Sbjct: 331 gcgaaaaaagccgtg 317
>ISMex13
Length = 2359
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 202 gccggccagcaggcg 216
|||||||||||||||
Sbjct: 508 gccggccagcaggcg 522
>ISGur8
Length = 2775
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 27 ttgagcagcgcctgg 41
|||||||||||||||
Sbjct: 770 ttgagcagcgcctgg 756
>ISAav4
Length = 1308
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 220 cagcgccgccagcac 234
|||||||||||||||
Sbjct: 886 cagcgccgccagcac 872
>ISMca5
Length = 1390
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 153 tgcgcccagcgcacg 167
|||||||||||||||
Sbjct: 221 tgcgcccagcgcacg 207
>ISMyin1
Length = 1532
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 88 gccagctggggcgc 101
||||||||||||||
Sbjct: 1096 gccagctggggcgc 1083
>TnAs3
Length = 18735
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 258 cgatggtgccgcgc 271
||||||||||||||
Sbjct: 2082 cgatggtgccgcgc 2069
>ISAeme5
Length = 2438
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 218 accagcgccgccag 231
||||||||||||||
Sbjct: 491 accagcgccgccag 478
>ISAs22
Length = 1198
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 188 catggcgcgcctca 201
||||||||||||||
Sbjct: 227 catggcgcgcctca 240
>ISNamo17
Length = 1836
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 165 acggtgaggtcgag 178
||||||||||||||
Sbjct: 303 acggtgaggtcgag 290
>ISHmu6
Length = 1889
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 166 cggtgaggtcgagc 179
||||||||||||||
Sbjct: 1272 cggtgaggtcgagc 1259
>ISH35
Length = 1836
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 165 acggtgaggtcgag 178
||||||||||||||
Sbjct: 303 acggtgaggtcgag 290
>ISNpe10
Length = 1835
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 165 acggtgaggtcgag 178
||||||||||||||
Sbjct: 303 acggtgaggtcgag 290
>ISLefe1
Length = 1710
Score = 28.2 bits (14), Expect = 5.5
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 218 accagcgccgccagcacc 235
||||| ||||||||||||
Sbjct: 1460 accagagccgccagcacc 1443
>ISLfe1
Length = 1800
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 256 ggcgatggtgccgc 269
||||||||||||||
Sbjct: 1239 ggcgatggtgccgc 1252
>ISTni2
Length = 3451
Score = 28.2 bits (14), Expect = 5.5
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 165 acggtgaggtcgagcagc 182
|||||||||||| |||||
Sbjct: 2469 acggtgaggtcgggcagc 2452
>ISPa43
Length = 19903
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 27 ttgagcagcgcctg 40
||||||||||||||
Sbjct: 13641 ttgagcagcgcctg 13654
>ISRso21
Length = 2032
Score = 28.2 bits (14), Expect = 5.5
Identities = 20/22 (90%)
Strand = Plus / Minus
Query: 166 cggtgaggtcgagcagcatgtc 187
|||||| ||| |||||||||||
Sbjct: 280 cggtgaagtccagcagcatgtc 259
>ISStu1
Length = 889
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 202 gccggccagcaggc 215
||||||||||||||
Sbjct: 704 gccggccagcaggc 717
>ISSro1
Length = 897
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 28 tgagcagcgcctgg 41
||||||||||||||
Sbjct: 256 tgagcagcgcctgg 243
>ISApr13
Length = 1556
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 219 ccagcgccgccagc 232
||||||||||||||
Sbjct: 822 ccagcgccgccagc 809
>ISRsp17
Length = 1664
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 94 tggggcgctgcacc 107
||||||||||||||
Sbjct: 1371 tggggcgctgcacc 1384
>ISRle10
Length = 1665
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 94 tggggcgctgcacc 107
||||||||||||||
Sbjct: 1371 tggggcgctgcacc 1384
>ISMpo8
Length = 849
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 187 ccatggcgcgcctc 200
||||||||||||||
Sbjct: 82 ccatggcgcgcctc 69
>ISBli5
Length = 1687
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 37 cctggaaacgcggg 50
||||||||||||||
Sbjct: 710 cctggaaacgcggg 723
>ISPa33
Length = 1561
Score = 28.2 bits (14), Expect = 5.5
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 143 ggcgatgaagtgcgccca 160
||||||||||||| ||||
Sbjct: 500 ggcgatgaagtgctccca 483
>ISMdi24
Length = 849
Score = 28.2 bits (14), Expect = 5.5
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 128 aacccagatgatgccggc 145
|||| |||||||||||||
Sbjct: 169 aaccaagatgatgccggc 152
>ISThsp9
Length = 6215
Score = 28.2 bits (14), Expect = 5.5
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 34 gcgcctggaaacgcgggc 51
|||| |||||||||||||
Sbjct: 936 gcgcgtggaaacgcgggc 953
>ISBj7_B
Length = 2865
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 139 tgccggcgatgaag 152
||||||||||||||
Sbjct: 1174 tgccggcgatgaag 1187
>ISMno3
Length = 1364
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 262 ggtgccgcgcgcgg 275
||||||||||||||
Sbjct: 460 ggtgccgcgcgcgg 447
>ISAeh1
Length = 2320
Score = 28.2 bits (14), Expect = 5.5
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 237 gggtgagcagcacgccga 254
||||||||||| ||||||
Sbjct: 1426 gggtgagcagctcgccga 1409
>ISAli8
Length = 1151
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 23 gcggttgagcagcg 36
||||||||||||||
Sbjct: 694 gcggttgagcagcg 681
>ISRhru1
Length = 1027
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 35 cgcctggaaacgcg 48
||||||||||||||
Sbjct: 226 cgcctggaaacgcg 239
>ISNisp1
Length = 1208
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 135 atgatgccggcgat 148
||||||||||||||
Sbjct: 1168 atgatgccggcgat 1155
>ISMca2
Length = 1308
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 49 ggctgcggtcatcg 62
||||||||||||||
Sbjct: 828 ggctgcggtcatcg 841
>ISFsp6
Length = 1472
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 222 gcgccgccagcacc 235
||||||||||||||
Sbjct: 120 gcgccgccagcacc 107
>ISCsp1
Length = 1393
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 154 gcgcccagcgcacg 167
||||||||||||||
Sbjct: 202 gcgcccagcgcacg 189
>ISPsy14
Length = 2597
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 44 acgcgggctgcggt 57
||||||||||||||
Sbjct: 1977 acgcgggctgcggt 1964
>ISRso9
Length = 1483
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 211 caggcgtaccagcg 224
||||||||||||||
Sbjct: 212 caggcgtaccagcg 199
>ISPa42
Length = 16941
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 201 agccggccagcagg 214
||||||||||||||
Sbjct: 2240 agccggccagcagg 2227
>IS408
Length = 2798
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 204 cggccagcaggcgt 217
||||||||||||||
Sbjct: 2197 cggccagcaggcgt 2210
>IS2112
Length = 1415
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 49 ggctgcggtcatcg 62
||||||||||||||
Sbjct: 1004 ggctgcggtcatcg 1017
>IS1536
Length = 1415
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 95 ggggcgctgcacca 108
||||||||||||||
Sbjct: 1296 ggggcgctgcacca 1283
>IS1420
Length = 1131
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 173 gtcgagcagcatgt 186
||||||||||||||
Sbjct: 504 gtcgagcagcatgt 491
>IS116
Length = 1421
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 51 ctgcggtcatcgct 64
||||||||||||||
Sbjct: 119 ctgcggtcatcgct 132
>IS1001
Length = 1306
Score = 28.2 bits (14), Expect = 5.5
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 263 gtgccgcgcgcggtgtcg 280
|||| |||||||||||||
Sbjct: 220 gtgcggcgcgcggtgtcg 237
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_132_length_281_cov_1.07353_ID_5434
(281 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISRer3 | IS256 | Rhodococcus erythropolis | 34 | 0.090 | |
| IS1166 | IS256 | - | Rhodococcus sp. | 34 | 0.090 |
| ISHko4 | IS200/IS605 | IS1341 | Halorubrum kocurii | 30 | 1.4 |
| ISApr13 | IS5 | Alpha proteobacterium | 30 | 1.4 | |
| ISApr12 | IS5 | Alpha proteobacterium | 30 | 1.4 | |
| ISPosp7 | IS1380 | Polaromonas sp. | 30 | 1.4 | |
| ISPre4 | IS21 | Pseudomonas resinovorans | 30 | 1.4 | |
| ISRaq1 | IS3 | IS407 | Rahnella aquatilis | 30 | 1.4 |
| IS1663 | IS110 | Bordetella pertussis | 30 | 1.4 | |
| ISPsy14 | IS21 | Pseudomonas syringae | 30 | 1.4 | |
| IS1474 | IS21 | - | Pseudomonas alcaligenes | 30 | 1.4 |
| ISMyin1 | ISNCY | ISDol1 | Mycobacterium indicus | 28 | 5.5 |
| ISTha3 | IS91 | Thauera sp. | 28 | 5.5 | |
| ISHalo1 | IS200/IS605 | IS1341 | Haloferax larsenii | 28 | 5.5 |
| ISBj5 | IS630 | Bradyrhizobium japonicum | 28 | 5.5 | |
| ISPa43 | Tn3 | Pseudomonas aeruginosa | 28 | 5.5 | |
| ISPve1 | IS21 | Paracoccus versutus | 28 | 5.5 | |
| ISAzba9 | ISL3 | Azospirillum brasilense | 28 | 5.5 | |
| ISAzs8 | ISL3 | Azospirillum sp. | 28 | 5.5 | |
| ISAs12 | ISAs1 | Aeromonas salmonicida | 28 | 5.5 | |
| ISRel21 | IS3 | IS407 | Rhizobium etli | 28 | 5.5 |
| ISBdo1 | IS1182 | Burkholderia dolosa | 28 | 5.5 | |
| ISShes11 | Tn3 | Shewanella sp. | 28 | 5.5 | |
| ISPph5 | ISNCY | ISDol1 | Pelodictyon phaeoclathratiforme | 28 | 5.5 |
| ISMra2 | IS5 | IS427 | Methylobacterium radiotolerans | 28 | 5.5 |
| ISUnCu12 | IS1380 | Uncultured marine microorganism | 28 | 5.5 | |
| ISDde1 | IS5 | IS5 | Desulfovibrio desulfuricans | 28 | 5.5 |
| ISAde2 | IS1182 | Anaeromyxobacter dehalogenans | 28 | 5.5 | |
| ISThsp13 | IS1380 | Thiomonas sp. | 28 | 5.5 | |
| ISAZo16 | IS21 | Azoarcus sp. | 28 | 5.5 | |
| ISCARN15 | IS66 | Metagenomic data from CARNOULES | 28 | 5.5 | |
| ISAnsp1 | IS1182 | Anaeromyxobacter sp. | 28 | 5.5 | |
| ISBcen28 | IS21 | Burkholderia cenocepacia | 28 | 5.5 | |
| ISLxx4 | IS481 | Leifsonia xyli | 28 | 5.5 | |
| ISPpa5 | IS66 | Paracoccus pantotrophus | 28 | 5.5 | |
| ISRH1 | IS6 | - | Rhizobium hedysari | 28 | 5.5 |
| ISH8D | IS4 | ISH8 | Halobacterium sp. | 28 | 5.5 |
| ISH8A | IS4 | ISH8 | Halobacterium sp. | 28 | 5.5 |
| ISH8 | IS4 | ISH8 | Halobacterium salinarum | 28 | 5.5 |
| ISH26-1 | IS4 | ISH8 | Halobacterium salinarum | 28 | 5.5 |
| ISH26 | IS4 | ISH8 | Halobacterium salinarum | 28 | 5.5 |
| IS931 | IS256 | - | Burkholderia cepacia | 28 | 5.5 |
| IS1631 | IS21 | - | Bradyrhizobium japonicum | 28 | 5.5 |
>ISRer3
Length = 1471
Score = 34.2 bits (17), Expect = 0.090
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 213 cgtcgtgaacgatctcgtcaa 233
||||| |||||||||||||||
Sbjct: 218 cgtcgcgaacgatctcgtcaa 198
>IS1166
Length = 1469
Score = 34.2 bits (17), Expect = 0.090
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 213 cgtcgtgaacgatctcgtcaa 233
||||| |||||||||||||||
Sbjct: 218 cgtcgcgaacgatctcgtcaa 198
>ISHko4
Length = 1517
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 138 cgcgtccgaccgccc 152
|||||||||||||||
Sbjct: 650 cgcgtccgaccgccc 636
>ISApr13
Length = 1556
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 267 tgtcggcgccgaggg 281
|||||||||||||||
Sbjct: 876 tgtcggcgccgaggg 862
>ISApr12
Length = 1524
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 267 tgtcggcgccgaggg 281
|||||||||||||||
Sbjct: 882 tgtcggcgccgaggg 868
>ISPosp7
Length = 1612
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 238 gctgcgcggatcggc 252
|||||||||||||||
Sbjct: 278 gctgcgcggatcggc 264
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 188 gccagcgcggcgag 201
||||||||||||||
Sbjct: 1093 gccagcgcggcgag 1106
>ISPre4
Length = 2575
Score = 30.2 bits (15), Expect = 1.4
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 227 tcgtcaatttcgctgcgcg 245
|||||||||||| ||||||
Sbjct: 2451 tcgtcaatttcgttgcgcg 2433
>ISRaq1
Length = 1221
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 156 ataccgaaagcagcg 170
|||||||||||||||
Sbjct: 801 ataccgaaagcagcg 787
>IS1663
Length = 1225
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 17 tgatcgatcgcccgc 31
|||||||||||||||
Sbjct: 778 tgatcgatcgcccgc 764
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 64 ggcagcgccgtggc 77
||||||||||||||
Sbjct: 442 ggcagcgccgtggc 429
>ISPsy14
Length = 2597
Score = 30.2 bits (15), Expect = 1.4
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 227 tcgtcaatttcgctgcgcg 245
|||||||||||| ||||||
Sbjct: 2473 tcgtcaatttcgttgcgcg 2455
>IS1474
Length = 2633
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 184 ggccgccagcgcggc 198
|||||||||||||||
Sbjct: 424 ggccgccagcgcggc 410
>ISMyin1
Length = 1532
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 1 caacttggccgcga 14
||||||||||||||
Sbjct: 665 caacttggccgcga 652
>ISTha3
Length = 2424
Score = 28.2 bits (14), Expect = 5.5
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 238 gctgcgcggatcggcacg 255
||||||||||| ||||||
Sbjct: 2273 gctgcgcggattggcacg 2256
>ISHalo1
Length = 1671
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 203 agacgcgaggcgtc 216
||||||||||||||
Sbjct: 117 agacgcgaggcgtc 130
>ISBj5
Length = 1185
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 47 tcaggcagctcgaa 60
||||||||||||||
Sbjct: 1023 tcaggcagctcgaa 1036
>ISPa43
Length = 19903
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 182 aaggccgccagcgc 195
||||||||||||||
Sbjct: 7833 aaggccgccagcgc 7846
>ISPve1
Length = 2503
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 40 ggcgaactcaggca 53
||||||||||||||
Sbjct: 882 ggcgaactcaggca 869
>ISAzba9
Length = 1847
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 107 cgacgctccagatc 120
||||||||||||||
Sbjct: 670 cgacgctccagatc 657
>ISAzs8
Length = 1373
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 107 cgacgctccagatc 120
||||||||||||||
Sbjct: 185 cgacgctccagatc 172
>ISAs12
Length = 1438
Score = 28.2 bits (14), Expect = 5.5
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 184 ggccgccagcgcggcgag 201
||||||||||| ||||||
Sbjct: 925 ggccgccagcggggcgag 908
>ISRel21
Length = 1200
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 13 gagttgatcgatcg 26
||||||||||||||
Sbjct: 429 gagttgatcgatcg 416
>ISBdo1
Length = 1572
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 166 cagcgacagcacgc 179
||||||||||||||
Sbjct: 485 cagcgacagcacgc 498
>ISShes11
Length = 7669
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 95 atcgcttcgagacg 108
||||||||||||||
Sbjct: 3839 atcgcttcgagacg 3826
>ISPph5
Length = 1876
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 43 gaactcaggcagct 56
||||||||||||||
Sbjct: 1677 gaactcaggcagct 1664
>ISMra2
Length = 905
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 127 aggcgacaacgcgc 140
||||||||||||||
Sbjct: 676 aggcgacaacgcgc 663
>ISUnCu12
Length = 1597
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 164 agcagcgacagcac 177
||||||||||||||
Sbjct: 711 agcagcgacagcac 698
>ISDde1
Length = 1479
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 12 cgagttgatcgatc 25
||||||||||||||
Sbjct: 195 cgagttgatcgatc 182
>ISAde2
Length = 1498
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 204 gacgcgaggcgtcg 217
||||||||||||||
Sbjct: 768 gacgcgaggcgtcg 781
>ISThsp13
Length = 1583
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 180 cgaaggccgccagc 193
||||||||||||||
Sbjct: 1208 cgaaggccgccagc 1195
>ISAZo16
Length = 2485
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 187 cgccagcgcggcga 200
||||||||||||||
Sbjct: 673 cgccagcgcggcga 660
>ISCARN15
Length = 2427
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 264 aggtgtcggcgccg 277
||||||||||||||
Sbjct: 136 aggtgtcggcgccg 123
>ISAnsp1
Length = 1520
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 190 cagcgcggcgagca 203
||||||||||||||
Sbjct: 467 cagcgcggcgagca 454
>ISBcen28
Length = 2311
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 29 cgcgagattcgggc 42
||||||||||||||
Sbjct: 377 cgcgagattcgggc 390
>ISLxx4
Length = 1110
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 168 gcgacagcacgccg 181
||||||||||||||
Sbjct: 781 gcgacagcacgccg 768
>ISPpa5
Length = 2829
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 21 cgatcgcccgcgag 34
||||||||||||||
Sbjct: 2004 cgatcgcccgcgag 2017
>ISRH1
Length = 811
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 218 tgaacgatctcgtc 231
||||||||||||||
Sbjct: 379 tgaacgatctcgtc 366
>ISH8D
Length = 1402
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 163 aagcagcgacagca 176
||||||||||||||
Sbjct: 1140 aagcagcgacagca 1127
>ISH8A
Length = 1402
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 163 aagcagcgacagca 176
||||||||||||||
Sbjct: 1140 aagcagcgacagca 1127
>ISH8
Length = 1402
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 163 aagcagcgacagca 176
||||||||||||||
Sbjct: 1140 aagcagcgacagca 1127
>ISH26-1
Length = 1705
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 163 aagcagcgacagca 176
||||||||||||||
Sbjct: 253 aagcagcgacagca 266
>ISH26
Length = 1384
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 163 aagcagcgacagca 176
||||||||||||||
Sbjct: 1132 aagcagcgacagca 1119
>IS931
Length = 1477
Score = 28.2 bits (14), Expect = 5.5
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 10 cgcgagttgatcgatcgc 27
|||| |||||||||||||
Sbjct: 834 cgcgggttgatcgatcgc 851
>IS1631
Length = 2712
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 118 atcacgaacaggcg 131
||||||||||||||
Sbjct: 676 atcacgaacaggcg 663
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_133_length_281_cov_1.06863_ID_5436
(281 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISMlu1 | IS256 | Micrococcus luteus | 36 | 0.023 | |
| ISNagr7 | IS1595 | ISH4 | Natronobacterium gregoryi | 32 | 0.35 |
| IS684 | IS66 | Pseudomonas syringae | 32 | 0.35 | |
| ISMdi26 | IS5 | IS1031 | Methylobacterium dichloromethanicum | 32 | 0.35 |
| ISSpu15 | IS21 | Shewanella putrefaciens | 32 | 0.35 | |
| ISPpu15 | IS66 | Pseudomonas putida | 32 | 0.35 | |
| ISHtu6 | IS200/IS605 | IS1341 | Haloterrigena turkmenica | 30 | 1.4 |
| ISNaoc3 | IS200/IS605 | IS1341 | Natronococcus occultus | 30 | 1.4 |
| ISAzs21 | IS66 | Azospirillum sp. | 30 | 1.4 | |
| ISNph18 | IS200/IS605 | IS1341 | Natronomonas pharaonis | 30 | 1.4 |
| ISPpa8 | IS5 | IS903 | Paracoccus pantotrophus | 30 | 1.4 |
| ISPna3 | IS5 | IS5 | Polaromonas naphthalenivorans | 30 | 1.4 |
| ISMtsp14 | IS5 | IS1031 | Methylobacterium sp. | 30 | 1.4 |
| ISPsp5 | IS1182 | Pseudomonas sp. | 30 | 1.4 | |
| ISSpu2 | IS630 | Shewanella putrefaciens | 30 | 1.4 | |
| IS406 | IS256 | - | Burkholderia cepacia | 30 | 1.4 |
| ISSna1 | ISNCY | ISDol1 | Streptomyces natalensis | 28 | 5.5 |
| TnXo19 | Tn3 | Xanthomonas oryzae | 28 | 5.5 | |
| ISHarch20 | IS200/IS605 | IS1341 | Halophilic archaeon | 28 | 5.5 |
| ISNph24 | IS200/IS605 | IS1341 | Natronomonas pharaonis | 28 | 5.5 |
| ISHhu9 | IS200/IS605 | IS1341 | Halobacterium hubeiense | 28 | 5.5 |
| ISHbo7 | IS200/IS605 | IS1341 | Halogeometricum borinquense | 28 | 5.5 |
| ISSm4 | ISL3 | Serratia marcescens | 28 | 5.5 | |
| ISBte2 | ISKra4 | ISAzba1 | Burkholderia terrae | 28 | 5.5 |
| ISAzs29 | Tn3 | Azospirillum sp. | 28 | 5.5 | |
| ISRle11 | IS1182 | Rhizobium leguminosarum | 28 | 5.5 | |
| ISStau7 | IS1182 | Stigmatella aurantiaca | 28 | 5.5 | |
| ISAar21 | IS4 | IS4 | Arthrobacter arilaitensis | 28 | 5.5 |
| ISMex6 | ISNCY | IS1202 | Methylobacterium extorquens | 28 | 5.5 |
| ISThsp18 | IS1182 | Thiomonas sp. | 28 | 5.5 | |
| ISPtu2 | IS110 | Pseudoalteromonas tunicata | 28 | 5.5 | |
| ISAzo28 | IS110 | Azoarcus sp. | 28 | 5.5 | |
| ISAzo21 | IS66 | Azoarcus sp. | 28 | 5.5 | |
| ISAzo19 | IS66 | Azoarcus sp. | 28 | 5.5 | |
| ISSpu16 | IS5 | IS903 | Shewanella putrefaciens | 28 | 5.5 |
| ISCARN23 | IS1634 | Metagenomic data from CARNOULES | 28 | 5.5 | |
| ISSpu6 | IS3 | IS3 | Shewanella putrefaciens | 28 | 5.5 |
| ISSsp5 | IS21 | Sphingomonas sp. | 28 | 5.5 | |
| ISVsh1 | ISAs1 | Vibrio shilonii | 28 | 5.5 | |
| ISAusp1 | IS1595 | ISNha5 | Aurantimonas sp. | 28 | 5.5 |
| ISGvi5 | IS3 | IS3 | Gloeobacter violaceus | 28 | 5.5 |
| ISBcen19 | IS66 | Burkholderia cenocepacia | 28 | 5.5 | |
| ISBlo2 | IS21 | Bifidobacterium longum | 28 | 5.5 | |
| ISPpu10 | IS110 | Pseudomonas putida | 28 | 5.5 | |
| ISPal1 | IS5 | IS427 | Pseudomonas alcaligenes | 28 | 5.5 |
| IS911 | IS3 | IS3 | Shigella dysenteriae | 28 | 5.5 |
| IS1086 | IS30 | - | Ralstonia metallidurans | 28 | 5.5 |
>ISMlu1
Length = 1413
Score = 36.2 bits (18), Expect = 0.023
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 17 cagggcttcgccgagcag 34
||||||||||||||||||
Sbjct: 167 cagggcttcgccgagcag 150
>ISNagr7
Length = 1004
Score = 32.2 bits (16), Expect = 0.35
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 252 tccagcgctttctccg 267
||||||||||||||||
Sbjct: 411 tccagcgctttctccg 426
>IS684
Length = 2040
Score = 32.2 bits (16), Expect = 0.35
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 143 ccgctgcgcctgctgg 158
||||||||||||||||
Sbjct: 1330 ccgctgcgcctgctgg 1345
>ISMdi26
Length = 859
Score = 32.2 bits (16), Expect = 0.35
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 113 ctggcgctgctgcgag 128
||||||||||||||||
Sbjct: 112 ctggcgctgctgcgag 127
>ISSpu15
Length = 2420
Score = 32.2 bits (16), Expect = 0.35
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 118 gctgctgcgaggcgat 133
||||||||||||||||
Sbjct: 881 gctgctgcgaggcgat 896
>ISPpu15
Length = 2041
Score = 32.2 bits (16), Expect = 0.35
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 143 ccgctgcgcctgctgg 158
||||||||||||||||
Sbjct: 1331 ccgctgcgcctgctgg 1346
>ISHtu6
Length = 1516
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 241 gttcggtgctttcca 255
|||||||||||||||
Sbjct: 580 gttcggtgctttcca 566
>ISNaoc3
Length = 1633
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 241 gttcggtgctttcca 255
|||||||||||||||
Sbjct: 640 gttcggtgctttcca 626
>ISAzs21
Length = 2598
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 121 gctgcgaggcgatca 135
|||||||||||||||
Sbjct: 1477 gctgcgaggcgatca 1491
>ISNph18
Length = 1458
Score = 30.2 bits (15), Expect = 1.4
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 214 gcaggttttcgctgttttc 232
||||||||||| |||||||
Sbjct: 1172 gcaggttttcgatgttttc 1154
>ISPpa8
Length = 1050
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 12 gcgcgcagggcttcg 26
|||||||||||||||
Sbjct: 785 gcgcgcagggcttcg 771
>ISPna3
Length = 1425
Score = 30.2 bits (15), Expect = 1.4
Identities = 21/23 (91%)
Strand = Plus / Minus
Query: 139 ccatccgctgcgcctgctggttg 161
|||| ||| ||||||||||||||
Sbjct: 708 ccatgcgcggcgcctgctggttg 686
>ISMtsp14
Length = 860
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 112 cctggcgctgctgcg 126
|||||||||||||||
Sbjct: 112 cctggcgctgctgcg 126
>ISPsp5
Length = 1617
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 110 cgcctggcgctgctg 124
|||||||||||||||
Sbjct: 715 cgcctggcgctgctg 701
>ISSpu2
Length = 1152
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 233 cgccagcagttcggt 247
|||||||||||||||
Sbjct: 448 cgccagcagttcggt 434
>IS406
Length = 1367
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 15 cgcagggcttcgccg 29
|||||||||||||||
Sbjct: 235 cgcagggcttcgccg 221
>ISSna1
Length = 1560
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 81 gcctgacgcacctg 94
||||||||||||||
Sbjct: 860 gcctgacgcacctg 873
>TnXo19
Length = 18767
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 106 tggtcgcctggcgc 119
||||||||||||||
Sbjct: 7662 tggtcgcctggcgc 7649
>ISHarch20
Length = 1533
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 246 gtgctttccagcgc 259
||||||||||||||
Sbjct: 1350 gtgctttccagcgc 1337
>ISNph24
Length = 1451
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 246 gtgctttccagcgc 259
||||||||||||||
Sbjct: 1320 gtgctttccagcgc 1307
>ISHhu9
Length = 1441
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 246 gtgctttccagcgc 259
||||||||||||||
Sbjct: 1313 gtgctttccagcgc 1300
>ISHbo7
Length = 1432
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 246 gtgctttccagcgc 259
||||||||||||||
Sbjct: 1297 gtgctttccagcgc 1284
>ISSm4
Length = 9109
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 244 cggtgctttccagc 257
||||||||||||||
Sbjct: 8186 cggtgctttccagc 8173
>ISBte2
Length = 1517
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 199 ccacgatatccggc 212
||||||||||||||
Sbjct: 798 ccacgatatccggc 785
>ISAzs29
Length = 3897
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 145 gctgcgcctgctgg 158
||||||||||||||
Sbjct: 2862 gctgcgcctgctgg 2849
>ISRle11
Length = 1527
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 263 ctccgcctcgcgct 276
||||||||||||||
Sbjct: 650 ctccgcctcgcgct 637
>ISStau7
Length = 1716
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 8 ctgcgcgcgcaggg 21
||||||||||||||
Sbjct: 1423 ctgcgcgcgcaggg 1410
>ISAar21
Length = 1396
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 137 atccatccgctgcg 150
||||||||||||||
Sbjct: 62 atccatccgctgcg 49
>ISMex6
Length = 1535
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 209 cggcggcaggtttt 222
||||||||||||||
Sbjct: 197 cggcggcaggtttt 210
>ISThsp18
Length = 1330
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 139 ccatccgctgcgcc 152
||||||||||||||
Sbjct: 152 ccatccgctgcgcc 165
>ISPtu2
Length = 1201
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 95 cagggtttgattgg 108
||||||||||||||
Sbjct: 1037 cagggtttgattgg 1024
>ISAzo28
Length = 1486
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 13 cgcgcagggcttcg 26
||||||||||||||
Sbjct: 867 cgcgcagggcttcg 854
>ISAzo21
Length = 2423
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 113 ctggcgctgctgcg 126
||||||||||||||
Sbjct: 886 ctggcgctgctgcg 873
>ISAzo19
Length = 2423
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 113 ctggcgctgctgcg 126
||||||||||||||
Sbjct: 886 ctggcgctgctgcg 873
>ISSpu16
Length = 1055
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 157 ggttgagcgcctgc 170
||||||||||||||
Sbjct: 183 ggttgagcgcctgc 170
>ISCARN23
Length = 1907
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 206 atccggcggcaggt 219
||||||||||||||
Sbjct: 784 atccggcggcaggt 797
>ISSpu6
Length = 1670
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 253 ccagcgctttctcc 266
||||||||||||||
Sbjct: 502 ccagcgctttctcc 489
>ISSsp5
Length = 2501
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 145 gctgcgcctgctgg 158
||||||||||||||
Sbjct: 1380 gctgcgcctgctgg 1393
>ISVsh1
Length = 1226
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 126 gaggcgatcagatc 139
||||||||||||||
Sbjct: 39 gaggcgatcagatc 52
>ISAusp1
Length = 3418
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 13 cgcgcagggcttcg 26
||||||||||||||
Sbjct: 2737 cgcgcagggcttcg 2724
>ISGvi5
Length = 1287
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 8 ctgcgcgcgcaggg 21
||||||||||||||
Sbjct: 571 ctgcgcgcgcaggg 584
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 238 gcagttcggtgctt 251
||||||||||||||
Sbjct: 720 gcagttcggtgctt 733
>ISBcen19
Length = 2450
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 233 cgccagcagttcgg 246
||||||||||||||
Sbjct: 1033 cgccagcagttcgg 1046
>ISBlo2
Length = 2455
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 81 gcctgacgcacctg 94
||||||||||||||
Sbjct: 765 gcctgacgcacctg 778
>ISPpu10
Length = 1314
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 57 gactgttcgcgcag 70
||||||||||||||
Sbjct: 47 gactgttcgcgcag 60
>ISPal1
Length = 924
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 94 gcagggtttgattg 107
||||||||||||||
Sbjct: 335 gcagggtttgattg 348
>IS911
Length = 1250
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 250 tttccagcgctttc 263
||||||||||||||
Sbjct: 882 tttccagcgctttc 869
>IS1086
Length = 1106
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 153 tgctggttgagcgc 166
||||||||||||||
Sbjct: 648 tgctggttgagcgc 661
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_134_length_280_cov_1.3202_ID_5438
(280 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISPfr18 | ISL3 | Propionibacterium freudenreichii | 36 | 0.023 | |
| ISMch1 | IS3 | IS150 | Methylobacterium chloromethanicum | 32 | 0.35 |
| ISHtu5 | IS200/IS605 | IS1341 | Haloterrigena turkmenica | 30 | 1.4 |
| ISHhy1 | ISKra4 | ISKra4 | Haliscomenobacter hydrossis | 30 | 1.4 |
| ISRel19 | IS66 | Rhizobium etli | 30 | 1.4 | |
| ISAar46 | IS3 | IS3 | Arthrobacter arilaitensis | 30 | 1.4 |
| ISPlpa1 | IS1380 | Plesiocystis pacifica | 30 | 1.4 | |
| ISCg2 | IS30 | - | Corynebacterium glutamicum | 30 | 1.4 |
| ISBian1 | IS5 | IS5 | Bifidobacterium animalis | 30 | 1.4 |
| ISPsp9 | IS1380 | Pseudomonas sp. | 28 | 5.5 | |
| ISAcif1 | ISNCY | ISMae2 | Acidithiobacillus ferrivorans | 28 | 5.5 |
| ISPrst3 | IS5 | IS427 | Providencia stuartii | 28 | 5.5 |
| ISPrst2 | IS5 | IS427 | Providencia stuartii | 28 | 5.5 |
| ISNph6 | IS200/IS605 | Natronomonas pharaonis | 28 | 5.5 | |
| ISAcfe1 | IS1182 | Acidimicrobium ferrooxidans | 28 | 5.5 | |
| ISCaa11 | IS481 | Candidatus Amoebophilus asiaticus | 28 | 5.5 | |
| ISEc32 | IS110 | Escherichia coli | 28 | 5.5 | |
| ISStau6 | ISAzo13 | Stigmatella aurantiaca | 28 | 5.5 | |
| ISAar42 | ISL3 | Arthrobacter arilaitensis | 28 | 5.5 | |
| ISAar13 | ISL3 | Arthrobacter arilaitensis | 28 | 5.5 | |
| ISMasp7 | IS1380 | Magnetococcus sp. | 28 | 5.5 | |
| ISAzo29 | ISAs1 | Azoarcus sp. | 28 | 5.5 | |
| ISCARN63 | ISNCY | IS1202 | Metagenomic data from CARNOULES | 28 | 5.5 |
| ISAfe9 | IS21 | Acidithiobacillus ferrooxidans | 28 | 5.5 | |
| ISShes9 | IS66 | Shewanella sp. | 28 | 5.5 | |
| ISBrsp6 | IS66 | Bradyrhizobium sp. | 28 | 5.5 | |
| ISNmu3 | IS3 | IS2 | Nitrosospira multiformis | 28 | 5.5 |
| ISSod9 | Tn3 | Shewanella oneidensis | 28 | 5.5 | |
| ISMca5 | IS256 | Methylococcus capsulatus | 28 | 5.5 | |
| ISTth2 | IS4 | IS10 | Thermus thermophilus | 28 | 5.5 |
| ISAzvi6 | IS4 | IS4 | Azotobacter vinelandii | 28 | 5.5 |
| ISPa11 | IS110 | IS1111 | Pseudomonas aeruginosa | 28 | 5.5 |
| IS13869 | ISL3 | - | Brevibacterium lactofermentum | 28 | 5.5 |
| IS1313 | IS66 | - | Agrobacterium tumefaciens | 28 | 5.5 |
| IS116 | IS110 | - | Streptomyces clavuligerus | 28 | 5.5 |
>ISPfr18
Length = 1437
Score = 36.2 bits (18), Expect = 0.023
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 132 acgcggccgctggcgcat 149
||||||||||||||||||
Sbjct: 294 acgcggccgctggcgcat 311
>ISMch1
Length = 1294
Score = 32.2 bits (16), Expect = 0.35
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 125 tggacgcacgcggccgctgg 144
|||||| |||||||||||||
Sbjct: 973 tggacggacgcggccgctgg 992
>ISHtu5
Length = 1435
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 152 ccgatacgctggtag 166
|||||||||||||||
Sbjct: 896 ccgatacgctggtag 882
>ISHhy1
Length = 1356
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 243 tccgccgcaggtatt 257
|||||||||||||||
Sbjct: 1063 tccgccgcaggtatt 1077
>ISRel19
Length = 2798
Score = 30.2 bits (15), Expect = 1.4
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 177 cctggcaagcttcatcggc 195
|||||||||||||| ||||
Sbjct: 1798 cctggcaagcttcagcggc 1816
>ISAar46
Length = 1526
Score = 30.2 bits (15), Expect = 1.4
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 54 catggatgagcttgttcgg 72
||||| |||||||||||||
Sbjct: 652 catggctgagcttgttcgg 634
>ISPlpa1
Length = 1849
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 176 gcctggcaagcttca 190
|||||||||||||||
Sbjct: 1149 gcctggcaagcttca 1135
>ISCg2
Length = 1636
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 205 tttgccgacaccgac 219
|||||||||||||||
Sbjct: 730 tttgccgacaccgac 716
>ISBian1
Length = 1134
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 9 gaaaagcaacaagcc 23
|||||||||||||||
Sbjct: 955 gaaaagcaacaagcc 969
>ISPsp9
Length = 1718
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 45 accactcgccatgg 58
||||||||||||||
Sbjct: 96 accactcgccatgg 109
>ISAcif1
Length = 2464
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 114 atggttgtcgctgg 127
||||||||||||||
Sbjct: 416 atggttgtcgctgg 403
>ISPrst3
Length = 869
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 115 tggttgtcgctgga 128
||||||||||||||
Sbjct: 501 tggttgtcgctgga 514
>ISPrst2
Length = 867
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 115 tggttgtcgctgga 128
||||||||||||||
Sbjct: 502 tggttgtcgctgga 515
>ISNph6
Length = 1854
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 151 gccgatacgctggt 164
||||||||||||||
Sbjct: 1088 gccgatacgctggt 1101
>ISAcfe1
Length = 1772
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 136 ggccgctggcgcat 149
||||||||||||||
Sbjct: 856 ggccgctggcgcat 869
>ISCaa11
Length = 1019
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 71 gggcagccatggcg 84
||||||||||||||
Sbjct: 406 gggcagccatggcg 393
>ISEc32
Length = 1180
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 157 acgctggtagaaca 170
||||||||||||||
Sbjct: 1011 acgctggtagaaca 998
>ISStau6
Length = 1304
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 46 ccactcgccatgga 59
||||||||||||||
Sbjct: 1256 ccactcgccatgga 1243
>ISAar42
Length = 1443
Score = 28.2 bits (14), Expect = 5.5
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 132 acgcggccgctggcgcat 149
||||| ||||||||||||
Sbjct: 301 acgcgcccgctggcgcat 318
>ISAar13
Length = 1416
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 128 acgcacgcggccgc 141
||||||||||||||
Sbjct: 627 acgcacgcggccgc 640
>ISMasp7
Length = 1661
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 137 gccgctggcgcatt 150
||||||||||||||
Sbjct: 396 gccgctggcgcatt 383
>ISAzo29
Length = 1304
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 109 ttcggatggttgtc 122
||||||||||||||
Sbjct: 735 ttcggatggttgtc 722
>ISCARN63
Length = 1387
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 212 acaccgacgggcgc 225
||||||||||||||
Sbjct: 1141 acaccgacgggcgc 1154
>ISAfe9
Length = 2503
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 203 cttttgccgacacc 216
||||||||||||||
Sbjct: 1955 cttttgccgacacc 1942
>ISShes9
Length = 2370
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 128 acgcacgcggccgc 141
||||||||||||||
Sbjct: 1714 acgcacgcggccgc 1701
>ISBrsp6
Length = 3112
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 72 ggcagccatggcga 85
||||||||||||||
Sbjct: 254 ggcagccatggcga 241
>ISNmu3
Length = 1323
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 106 gtgttcggatggtt 119
||||||||||||||
Sbjct: 802 gtgttcggatggtt 815
>ISSod9
Length = 4412
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 14 gcaacaagccctgg 27
||||||||||||||
Sbjct: 1611 gcaacaagccctgg 1598
>ISMca5
Length = 1390
Score = 28.2 bits (14), Expect = 5.5
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 206 ttgccgacaccgacgggc 223
|||||| |||||||||||
Sbjct: 787 ttgccgtcaccgacgggc 804
>ISTth2
Length = 1184
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 18 caagccctggtggc 31
||||||||||||||
Sbjct: 406 caagccctggtggc 419
>ISAzvi6
Length = 1422
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 103 gccgtgttcggatg 116
||||||||||||||
Sbjct: 842 gccgtgttcggatg 855
>ISPa11
Length = 1372
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 51 cgccatggatgagc 64
||||||||||||||
Sbjct: 927 cgccatggatgagc 914
>IS13869
Length = 1437
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 221 ggcgctggtatttc 234
||||||||||||||
Sbjct: 960 ggcgctggtatttc 947
>IS1313
Length = 2547
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 50 tcgccatggatgag 63
||||||||||||||
Sbjct: 1664 tcgccatggatgag 1651
>IS116
Length = 1421
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 240 cggtccgccgcagg 253
||||||||||||||
Sbjct: 786 cggtccgccgcagg 773
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_135_length_279_cov_0.722772_ID_5440
(279 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISSav7 | IS481 | Streptomyces avermitilis | 36 | 0.022 | |
| ISMno35 | IS6 | Methylobacterium nodulans | 32 | 0.35 | |
| ISSso4 | IS21 | Shigella sonnei | 32 | 0.35 | |
| ISRde1 | IS3 | IS51 | Roseobacter denitrificans | 32 | 0.35 |
| IS1663 | IS110 | Bordetella pertussis | 32 | 0.35 | |
| ISActu1 | IS256 | Actinomyces turicensis | 30 | 1.4 | |
| ISNmo4 | IS5 | IS5 | Nitrococcus mobilis | 30 | 1.4 |
| ISVsp14 | IS4 | IS231 | Verrucomicrobium spinosum | 30 | 1.4 |
| ISStma11 | ISL3 | Stenotrophomonas maltophilia | 30 | 1.4 | |
| ISCARN89 | IS21 | Metagenomic data from CARNOULES | 30 | 1.4 | |
| ISCARN3 | IS21 | Metagenomic data from CARNOULES | 30 | 1.4 | |
| ISPto6 | IS1380 | IS942 | Psychroflexus torquis | 30 | 1.4 |
| ISRta2 | IS256 | Ralstonia taiwanensis | 30 | 1.4 | |
| ISXo14 | IS4 | IS10 | Xanthomonas oryzae | 30 | 1.4 |
| ISSf1 | IS5 | IS1031 | Shigella flexneri | 30 | 1.4 |
| ISRm13 | IS5 | IS5 | Sinorhizobium meliloti | 30 | 1.4 |
| ISUnCu17 | IS1182 | Uncultured bacteria | 28 | 5.5 | |
| ISAs31 | IS3 | IS3 | Aeromonas salmonicida | 28 | 5.5 |
| ISBj11 | IS21 | Bradyrhizobium japonicum | 28 | 5.5 | |
| ISHoc2 | ISKra4 | ISKra4 | Haliangium ochraceum | 28 | 5.5 |
| ISNpu15 | ISKra4 | ISMich2 | Nostoc punctiforme | 28 | 5.5 |
| ISPfe2 | IS1634 | Paracoccus ferrooxidans | 28 | 5.5 | |
| ISPpa7 | IS66 | Paracoccus pantotrophus | 28 | 5.5 | |
| ISPaen2 | IS5 | IS5 | Paenibacillus sp. | 28 | 5.5 |
| ISPna3 | IS5 | IS5 | Polaromonas naphthalenivorans | 28 | 5.5 |
| ISUnCu2 | IS5 | IS5 | Uncultured bacterium | 28 | 5.5 |
| ISArsp6 | Tn3 | Arthrobacter sp. | 28 | 5.5 | |
| ISArsp4 | IS256 | Arthrobacter sp. | 28 | 5.5 | |
| ISRer1 | IS1380 | Rhodococcus erythropolis | 28 | 5.5 | |
| ISPosp7 | IS1380 | Polaromonas sp. | 28 | 5.5 | |
| ISRsp7 | IS1380 | Rhizobium sp. | 28 | 5.5 | |
| ISStma7 | IS110 | Stenotrophomonas maltophilia | 28 | 5.5 | |
| ISThi1 | IS5 | IS5 | Thioalkalivibrio sp. | 28 | 5.5 |
| ISThsp7 | IS1634 | Thiomonas sp. | 28 | 5.5 | |
| ISCausp2 | IS1595 | ISNha5 | Caulobacter sp. | 28 | 5.5 |
| ISMsm6 | IS1634 | Mycobacterium smegmatis | 28 | 5.5 | |
| ISSsp2 | IS3 | IS150 | Sphingomonas sp. | 28 | 5.5 |
| ISHne2 | IS481 | Hyphomonas neptunium | 28 | 5.5 | |
| ISAzo9 | IS630 | Azoarcus sp. | 28 | 5.5 | |
| ISPre2 | IS5 | IS5 | Pseudomonas resinovorans | 28 | 5.5 |
| ISSme2 | IS21 | Sinorhizobium medicae | 28 | 5.5 | |
| ISGme8 | IS110 | Geobacter metallireducens | 28 | 5.5 | |
| ISSusp2 | IS3 | IS407 | Sulfitobacter sp. | 28 | 5.5 |
| ISAzvi10 | IS701 | Azotobacter vinelandii | 28 | 5.5 | |
| ISBcen19 | IS66 | Burkholderia cenocepacia | 28 | 5.5 | |
| ISBcen14 | IS66 | Burkholderia cenocepacia | 28 | 5.5 | |
| ISAzo25 | IS1182 | Azoarcus sp. | 28 | 5.5 | |
| ISSau2 | IS3 | IS150 | Staphylococcus aureus | 28 | 5.5 |
| ISCc3 | IS3 | IS150 | Caulobacter crescentus | 28 | 5.5 |
| ISRso12 | IS3 | IS407 | Ralstonia solanacearum | 28 | 5.5 |
| ISPsp1 | IS5 | IS5 | Pseudomonas sp | 28 | 5.5 |
| IS1384 | IS5 | IS5 | Pseudomonas putida | 28 | 5.5 |
| IS1002 | IS481 | - | Bordetella parapertussis | 28 | 5.5 |
>ISSav7
Length = 2992
Score = 36.2 bits (18), Expect = 0.022
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 47 tctggccgaacaggcggg 64
||||||||||||||||||
Sbjct: 2746 tctggccgaacaggcggg 2729
>ISMno35
Length = 894
Score = 32.2 bits (16), Expect = 0.35
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 142 tcgctgagcgcgtcgc 157
||||||||||||||||
Sbjct: 212 tcgctgagcgcgtcgc 197
>ISSso4
Length = 2638
Score = 32.2 bits (16), Expect = 0.35
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 33 gccgccggtggctttctggc 52
|||||||||||| |||||||
Sbjct: 1426 gccgccggtggcgttctggc 1407
>ISRde1
Length = 1238
Score = 32.2 bits (16), Expect = 0.35
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 129 ggtgatgccgtgatcg 144
||||||||||||||||
Sbjct: 983 ggtgatgccgtgatcg 968
>IS1663
Length = 1225
Score = 32.2 bits (16), Expect = 0.35
Identities = 22/24 (91%)
Strand = Plus / Plus
Query: 6 cgggcgctcgatcagcacttcgac 29
|||||| ||||||||||| |||||
Sbjct: 765 cgggcgatcgatcagcacatcgac 788
>ISActu1
Length = 1440
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 143 cgctgagcgcgtcgc 157
|||||||||||||||
Sbjct: 95 cgctgagcgcgtcgc 109
>ISNmo4
Length = 1176
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 218 cgtcgggcagcgcgt 232
|||||||||||||||
Sbjct: 375 cgtcgggcagcgcgt 361
>ISVsp14
Length = 1351
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 146 tgagcgcgtcgctgc 160
|||||||||||||||
Sbjct: 865 tgagcgcgtcgctgc 851
>ISStma11
Length = 4621
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 30 ctggccgccggtggc 44
|||||||||||||||
Sbjct: 3883 ctggccgccggtggc 3869
>ISCARN89
Length = 2461
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 41 tggctttctggccga 55
|||||||||||||||
Sbjct: 2033 tggctttctggccga 2019
>ISCARN3
Length = 2070
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 231 gtaatcaaaatcgtc 245
|||||||||||||||
Sbjct: 1410 gtaatcaaaatcgtc 1396
>ISPto6
Length = 1692
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 230 cgtaatcaaaatcgt 244
|||||||||||||||
Sbjct: 572 cgtaatcaaaatcgt 558
>ISRta2
Length = 1386
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 45 tttctggccgaacag 59
|||||||||||||||
Sbjct: 466 tttctggccgaacag 480
>ISXo14
Length = 1352
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 217 gcgtcgggcagcgcg 231
|||||||||||||||
Sbjct: 1301 gcgtcgggcagcgcg 1287
>ISSf1
Length = 1160
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 201 ggcctgagcaatcag 215
|||||||||||||||
Sbjct: 454 ggcctgagcaatcag 440
>ISRm13
Length = 1550
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 92 cgagccggtcatcgg 106
|||||||||||||||
Sbjct: 1331 cgagccggtcatcgg 1345
>ISUnCu17
Length = 1481
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 8 ggcgctcgatcagc 21
||||||||||||||
Sbjct: 390 ggcgctcgatcagc 377
>ISAs31
Length = 1322
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 197 gcggggcctgagca 210
||||||||||||||
Sbjct: 770 gcggggcctgagca 783
>ISBj11
Length = 2649
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 140 gatcgctgagcgcg 153
||||||||||||||
Sbjct: 1866 gatcgctgagcgcg 1879
>ISHoc2
Length = 1715
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 28 acctggccgccggt 41
||||||||||||||
Sbjct: 1275 acctggccgccggt 1262
>ISNpu15
Length = 1218
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 210 aatcagcgcgtcgg 223
||||||||||||||
Sbjct: 441 aatcagcgcgtcgg 454
>ISPfe2
Length = 1884
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 47 tctggccgaacagg 60
||||||||||||||
Sbjct: 998 tctggccgaacagg 1011
>ISPpa7
Length = 2731
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 168 cagcaagcggctgg 181
||||||||||||||
Sbjct: 1437 cagcaagcggctgg 1450
>ISPaen2
Length = 1786
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 93 gagccggtcatcgg 106
||||||||||||||
Sbjct: 919 gagccggtcatcgg 932
>ISPna3
Length = 1425
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 167 ccagcaagcggctg 180
||||||||||||||
Sbjct: 621 ccagcaagcggctg 608
>ISUnCu2
Length = 1491
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 139 tgatcgctgagcgc 152
||||||||||||||
Sbjct: 764 tgatcgctgagcgc 751
>ISArsp6
Length = 26712
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 31 tggccgccggtggc 44
||||||||||||||
Sbjct: 1316 tggccgccggtggc 1329
>ISArsp4
Length = 1400
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 92 cgagccggtcatcg 105
||||||||||||||
Sbjct: 403 cgagccggtcatcg 416
>ISRer1
Length = 1687
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 10 cgctcgatcagcac 23
||||||||||||||
Sbjct: 26 cgctcgatcagcac 13
>ISPosp7
Length = 1612
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 10 cgctcgatcagcac 23
||||||||||||||
Sbjct: 1228 cgctcgatcagcac 1215
>ISRsp7
Length = 2024
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 219 gtcgggcagcgcgt 232
||||||||||||||
Sbjct: 461 gtcgggcagcgcgt 474
>ISStma7
Length = 1223
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 33 gccgccggtggctt 46
||||||||||||||
Sbjct: 369 gccgccggtggctt 356
>ISThi1
Length = 1191
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 99 gtcatcggcgccga 112
||||||||||||||
Sbjct: 613 gtcatcggcgccga 600
>ISThsp7
Length = 1920
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 162 gaccaccagcaagc 175
||||||||||||||
Sbjct: 640 gaccaccagcaagc 653
>ISCausp2
Length = 7915
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 194 cgagcggggcctga 207
||||||||||||||
Sbjct: 382 cgagcggggcctga 395
>ISMsm6
Length = 1765
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 26 cgacctggccgccg 39
||||||||||||||
Sbjct: 279 cgacctggccgccg 266
>ISSsp2
Length = 1511
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 101 catcggcgccgagc 114
||||||||||||||
Sbjct: 620 catcggcgccgagc 633
>ISHne2
Length = 1316
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 14 cgatcagcacttcg 27
||||||||||||||
Sbjct: 1128 cgatcagcacttcg 1115
>ISAzo9
Length = 1483
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 2 ccaccgggcgctcg 15
||||||||||||||
Sbjct: 888 ccaccgggcgctcg 875
>ISPre2
Length = 1190
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 99 gtcatcggcgccga 112
||||||||||||||
Sbjct: 613 gtcatcggcgccga 600
>ISSme2
Length = 2219
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 13 tcgatcagcacttc 26
||||||||||||||
Sbjct: 693 tcgatcagcacttc 680
>ISGme8
Length = 1185
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 33 gccgccggtggctt 46
||||||||||||||
Sbjct: 373 gccgccggtggctt 360
>ISSusp2
Length = 1202
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 7 gggcgctcgatcag 20
||||||||||||||
Sbjct: 734 gggcgctcgatcag 747
>ISAzvi10
Length = 1431
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 50 ggccgaacaggcgg 63
||||||||||||||
Sbjct: 803 ggccgaacaggcgg 816
>ISBcen19
Length = 2450
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 127 tcggtgatgccgtg 140
||||||||||||||
Sbjct: 1850 tcggtgatgccgtg 1837
>ISBcen14
Length = 2516
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 218 cgtcgggcagcgcg 231
||||||||||||||
Sbjct: 920 cgtcgggcagcgcg 907
>ISAzo25
Length = 1388
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 8 ggcgctcgatcagc 21
||||||||||||||
Sbjct: 425 ggcgctcgatcagc 412
>ISSau2
Length = 1660
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 258 catgtgcttgatac 271
||||||||||||||
Sbjct: 577 catgtgcttgatac 564
>ISCc3
Length = 1514
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 49 tggccgaacaggcg 62
||||||||||||||
Sbjct: 393 tggccgaacaggcg 406
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 212 tcagcgcgtcgggc 225
||||||||||||||
Sbjct: 1028 tcagcgcgtcgggc 1041
>ISRso12
Length = 1225
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 3 caccgggcgctcga 16
||||||||||||||
Sbjct: 679 caccgggcgctcga 666
>ISPsp1
Length = 1188
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 99 gtcatcggcgccga 112
||||||||||||||
Sbjct: 613 gtcatcggcgccga 600
>IS1384
Length = 1178
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 99 gtcatcggcgccga 112
||||||||||||||
Sbjct: 607 gtcatcggcgccga 594
>IS1002
Length = 1030
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 168 cagcaagcggctgg 181
||||||||||||||
Sbjct: 501 cagcaagcggctgg 514
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_136_length_279_cov_0.712871_ID_5442
(279 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISAde4 | IS3 | IS407 | Anaeromyxobacter dehalogenans | 36 | 0.022 |
| ISPko1 | IS5 | IS903 | Paracoccus kondratievae | 30 | 1.4 |
| ISRhru3 | IS110 | IS1111 | Rhodospirillum rubrum | 30 | 1.4 |
| ISCARN28 | IS110 | IS1111 | Metagenomic data from CARNOULES | 30 | 1.4 |
| ISGdi17 | IS21 | Gluconacetobacter diazotrophicus | 30 | 1.4 | |
| ISStau5 | IS66 | ISBst12 | Stigmatella aurantiaca | 30 | 1.4 |
| ISStau4 | IS66 | ISBst12 | Stigmatella aurantiaca | 30 | 1.4 |
| ISRta1 | ISL3 | Ralstonia taiwanensis | 30 | 1.4 | |
| ISMysp4 | IS481 | Mycobacterium sp. | 30 | 1.4 | |
| ISBvi4 | IS3 | IS3 | Burkholderia vietnamiensis | 30 | 1.4 |
| ISEc13 | IS4 | IS50 | Escherichia coli | 30 | 1.4 |
| IS1382 | IS30 | - | Pseudomonas putida | 30 | 1.4 |
| IS1096 | ISL3 | - | Mycobacterium smegmatis | 30 | 1.4 |
| ISAeme7 | IS5 | IS903 | Aeromonas media | 28 | 5.5 |
| ISAs13 | IS5 | IS903 | Aeromonas salmonicida | 28 | 5.5 |
| ISSlgl1 | IS256 | IS1249 | Slackia heliotrinireducens | 28 | 5.5 |
| ISPa43 | Tn3 | Pseudomonas aeruginosa | 28 | 5.5 | |
| ISGau4 | IS3 | IS407 | Gemmatimonas aurantiaca | 28 | 5.5 |
| ISMafe1 | IS5 | IS5 | Mariprofundus ferrooxydans | 28 | 5.5 |
| ISStsp1 | ISAzo13 | Streptomyces sp. | 28 | 5.5 | |
| ISMno30 | ISL3 | Methylobacterium nodulans | 28 | 5.5 | |
| ISPfr3 | ISL3 | Propionibacterium freudenreichii | 28 | 5.5 | |
| ISTro1 | IS1380 | Thiocapsa roseopersicina | 28 | 5.5 | |
| ISAde3 | IS3 | IS407 | Anaeromyxobacter dehalogenans | 28 | 5.5 |
| ISMdi18 | IS1595 | ISNwi1 | Methylobacterium dichloromethanicum | 28 | 5.5 |
| ISStma11 | ISL3 | Stenotrophomonas maltophilia | 28 | 5.5 | |
| ISThsp8 | IS1634 | Thiomonas sp. | 28 | 5.5 | |
| ISGdi7 | IS110 | IS1111 | Gluconacetobacter diazotrophicus | 28 | 5.5 |
| ISMno2 | IS66 | ISBst12 | Methylobacterium nodulans | 28 | 5.5 |
| ISStau3 | IS66 | ISBst12 | Stigmatella aurantiaca | 28 | 5.5 |
| ISPst3 | IS21 | Pseudomonas stutzeri | 28 | 5.5 | |
| ISMpo1 | IS6 | Methylobacterium populi | 28 | 5.5 | |
| ISKpn4 | IS110 | IS1111 | Klebsiella pneumoniae | 28 | 5.5 |
| ISVisp1 | IS3 | IS3 | Vibrio splendidus | 28 | 5.5 |
| ISPpu17 | IS30 | Pseudomonas putida | 28 | 5.5 | |
| ISSth1 | ISL3 | Streptococcus thermophilus | 28 | 5.5 | |
| ISSpo1 | IS110 | IS1111 | Silicibacter pomeroyi | 28 | 5.5 |
| ISRm10 | IS630 | - | Sinorhizobium meliloti | 28 | 5.5 |
| IS1547 | IS110 | - | Mycobacterium tuberculosis | 28 | 5.5 |
| IS1536 | IS607 | Mycobacterium tuberculosis | 28 | 5.5 | |
| IS1511 | IS256 | - | Mycobacterium gordonae | 28 | 5.5 |
| IS1416 | IS3 | IS51 | Burkholderia glumae | 28 | 5.5 |
>ISAde4
Length = 1183
Score = 36.2 bits (18), Expect = 0.022
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 12 cgcgagcccgacgacgcg 29
||||||||||||||||||
Sbjct: 419 cgcgagcccgacgacgcg 402
>ISPko1
Length = 1050
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 197 gctgggatgccgcgc 211
|||||||||||||||
Sbjct: 170 gctgggatgccgcgc 184
>ISRhru3
Length = 1382
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 100 ctgctgcgcggcttc 114
|||||||||||||||
Sbjct: 556 ctgctgcgcggcttc 570
>ISCARN28
Length = 1419
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 202 gatgccgcgcagcgc 216
|||||||||||||||
Sbjct: 820 gatgccgcgcagcgc 806
>ISGdi17
Length = 2482
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 65 tgttcgagggcgttg 79
|||||||||||||||
Sbjct: 2068 tgttcgagggcgttg 2054
>ISStau5
Length = 1580
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 92 tgccctcgctgctgc 106
|||||||||||||||
Sbjct: 1512 tgccctcgctgctgc 1526
>ISStau4
Length = 1579
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 92 tgccctcgctgctgc 106
|||||||||||||||
Sbjct: 1511 tgccctcgctgctgc 1525
>ISRta1
Length = 1303
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 55 accacgctggtgttc 69
|||||||||||||||
Sbjct: 1188 accacgctggtgttc 1174
>ISMysp4
Length = 1090
Score = 30.2 bits (15), Expect = 1.4
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 248 tcgatgccgccaagggcgt 266
|||||||||||||| ||||
Sbjct: 866 tcgatgccgccaagtgcgt 848
>ISBvi4
Length = 1268
Score = 30.2 bits (15), Expect = 1.4
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 145 gacgaccgccggctggcct 163
||||||||||||| |||||
Sbjct: 904 gacgaccgccggcgggcct 922
>ISEc13
Length = 1550
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 44 aagacaccaccacca 58
|||||||||||||||
Sbjct: 1111 aagacaccaccacca 1097
>IS1382
Length = 1093
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 84 cgagcccgtgccctc 98
|||||||||||||||
Sbjct: 870 cgagcccgtgccctc 856
>IS1096
Length = 2259
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 68 tcgagggcgttgccg 82
|||||||||||||||
Sbjct: 920 tcgagggcgttgccg 906
>ISAeme7
Length = 1062
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 110 gcttctcggcgccg 123
||||||||||||||
Sbjct: 515 gcttctcggcgccg 502
>ISAs13
Length = 1062
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 110 gcttctcggcgccg 123
||||||||||||||
Sbjct: 515 gcttctcggcgccg 502
>ISSlgl1
Length = 1341
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 231 ggtgctggcgatga 244
||||||||||||||
Sbjct: 518 ggtgctggcgatga 505
>ISPa43
Length = 19903
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 98 cgctgctgcgcggc 111
||||||||||||||
Sbjct: 10796 cgctgctgcgcggc 10783
>ISGau4
Length = 1210
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 261 gggcgtgctgccgc 274
||||||||||||||
Sbjct: 520 gggcgtgctgccgc 507
>ISMafe1
Length = 1745
Score = 28.2 bits (14), Expect = 5.5
Identities = 20/22 (90%)
Strand = Plus / Minus
Query: 104 tgcgcggcttctcggcgccggt 125
|||||||||||| | |||||||
Sbjct: 797 tgcgcggcttcttgccgccggt 776
>ISStsp1
Length = 1694
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 153 ccggctggccttcc 166
||||||||||||||
Sbjct: 1425 ccggctggccttcc 1438
>ISMno30
Length = 1773
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 238 gcgatgacggtcga 251
||||||||||||||
Sbjct: 598 gcgatgacggtcga 585
>ISPfr3
Length = 1457
Score = 28.2 bits (14), Expect = 5.5
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 1 ggcgacacggccgcgagc 18
|||| |||||||||||||
Sbjct: 1162 ggcgccacggccgcgagc 1179
>ISTro1
Length = 1735
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 112 ttctcggcgccggt 125
||||||||||||||
Sbjct: 727 ttctcggcgccggt 714
>ISAde3
Length = 1183
Score = 28.2 bits (14), Expect = 5.5
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 12 cgcgagcccgacgacgcg 29
|||||| |||||||||||
Sbjct: 419 cgcgagtccgacgacgcg 402
>ISMdi18
Length = 3479
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 8 cggccgcgagcccg 21
||||||||||||||
Sbjct: 501 cggccgcgagcccg 514
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 110 gcttctcggcgccg 123
||||||||||||||
Sbjct: 2838 gcttctcggcgccg 2825
>ISStma11
Length = 4621
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 25 acgcgcgtggtcga 38
||||||||||||||
Sbjct: 1413 acgcgcgtggtcga 1426
>ISThsp8
Length = 1929
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 225 gcgcgtggtgctgg 238
||||||||||||||
Sbjct: 950 gcgcgtggtgctgg 963
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 204 tgccgcgcagcgct 217
||||||||||||||
Sbjct: 1127 tgccgcgcagcgct 1114
>ISGdi7
Length = 1518
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 18 cccgacgacgcgcg 31
||||||||||||||
Sbjct: 1336 cccgacgacgcgcg 1323
>ISMno2
Length = 1419
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 20 cgacgacgcgcgtg 33
||||||||||||||
Sbjct: 489 cgacgacgcgcgtg 476
>ISStau3
Length = 1579
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 93 gccctcgctgctgc 106
||||||||||||||
Sbjct: 1512 gccctcgctgctgc 1525
>ISPst3
Length = 2606
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 54 caccacgctggtgt 67
||||||||||||||
Sbjct: 2189 caccacgctggtgt 2176
>ISMpo1
Length = 888
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 248 tcgatgccgccaag 261
||||||||||||||
Sbjct: 451 tcgatgccgccaag 464
>ISKpn4
Length = 1377
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 201 ggatgccgcgcagc 214
||||||||||||||
Sbjct: 496 ggatgccgcgcagc 483
>ISVisp1
Length = 1267
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 124 gtcattctcgagct 137
||||||||||||||
Sbjct: 332 gtcattctcgagct 319
>ISPpu17
Length = 1066
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 189 cttcaaccgctggg 202
||||||||||||||
Sbjct: 399 cttcaaccgctggg 386
>ISSth1
Length = 1416
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 66 gttcgagggcgttg 79
||||||||||||||
Sbjct: 1221 gttcgagggcgttg 1208
>ISSpo1
Length = 1363
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 194 accgctgggatgcc 207
||||||||||||||
Sbjct: 959 accgctgggatgcc 972
>ISRm10
Length = 1047
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 244 acggtcgatgccgc 257
||||||||||||||
Sbjct: 575 acggtcgatgccgc 588
>IS1547
Length = 1351
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 248 tcgatgccgccaag 261
||||||||||||||
Sbjct: 769 tcgatgccgccaag 782
>IS1536
Length = 1415
Score = 28.2 bits (14), Expect = 5.5
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 231 ggtgctggcgatgacggt 248
|||||||||||| |||||
Sbjct: 1223 ggtgctggcgatcacggt 1240
>IS1511
Length = 1278
Score = 28.2 bits (14), Expect = 5.5
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 91 gtgccctcgctgctgcgc 108
|||| |||||||||||||
Sbjct: 230 gtgcgctcgctgctgcgc 213
>IS1416
Length = 1322
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 101 tgctgcgcggcttc 114
||||||||||||||
Sbjct: 466 tgctgcgcggcttc 479
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_137_length_279_cov_0.722772_ID_5444
(279 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISCARN41 | IS630 | Metagenomic data from CARNOULES | 30 | 1.4 | |
| ISGdi3 | IS5 | IS1031 | Gluconacetobacter diazotrophicus | 30 | 1.4 |
| ISRta4 | IS110 | Ralstonia taiwanensis | 30 | 1.4 | |
| ISShes5 | IS4 | IS10 | Shewanella sp. | 30 | 1.4 |
| ISRosp2 | IS3 | IS407 | Roseobacter sp. | 30 | 1.4 |
| ISSde1 | IS4 | IS10 | Shewanella denitrificans | 30 | 1.4 |
| ISAli15 | IS66 | Azospirillum lipoferum | 30 | 1.4 | |
| ISMmg1 | IS110 | IS1111 | Magnetospirillum magnetotacticum | 30 | 1.4 |
| IS1647 | IS5 | IS427 | Streptomyces coelicolor | 30 | 1.4 |
| ISAeme24 | IS66 | ISBst12 | Aeromonas media | 28 | 5.5 |
| ISSusp3 | ISKra4 | ISAzba1 | Sulfitobacter sp. | 28 | 5.5 |
| ISBps3 | IS5 | IS903 | Burkholderia pseudomallei | 28 | 5.5 |
| ISRel16 | IS21 | Rhizobium etli | 28 | 5.5 | |
| ISMdi11 | IS481 | Methylobacterium dichloromethanicum | 28 | 5.5 | |
| ISBmu11 | IS3 | IS150 | Burkholderia multivorans | 28 | 5.5 |
| ISRba2 | IS4 | IS50 | Rhodopirellula baltica | 28 | 5.5 |
| ISPst9 | ISL3 | Pseudomonas stutzeri | 28 | 5.5 | |
| IS8402 | IS4 | IS10 | Synechocystis sp. | 28 | 5.5 |
>ISCARN41
Length = 1113
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 66 agatcatgcagatcg 80
|||||||||||||||
Sbjct: 143 agatcatgcagatcg 157
>ISGdi3
Length = 912
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 171 gcatcgcgcaggtca 185
|||||||||||||||
Sbjct: 148 gcatcgcgcaggtca 134
>ISRta4
Length = 1915
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 239 atggccgaactcgaa 253
|||||||||||||||
Sbjct: 1062 atggccgaactcgaa 1076
>ISShes5
Length = 1318
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 106 gtcaccgatgcaggt 120
|||||||||||||||
Sbjct: 577 gtcaccgatgcaggt 591
>ISRosp2
Length = 1254
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 169 gggcatcgcgcaggt 183
|||||||||||||||
Sbjct: 714 gggcatcgcgcaggt 728
>ISSde1
Length = 1318
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 105 tgtcaccgatgcagg 119
|||||||||||||||
Sbjct: 576 tgtcaccgatgcagg 590
>ISAli15
Length = 2658
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 44 ccgatcagctcgatc 58
|||||||||||||||
Sbjct: 1258 ccgatcagctcgatc 1272
>ISMmg1
Length = 1359
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 162 ccatcccgggcatcg 176
|||||||||||||||
Sbjct: 728 ccatcccgggcatcg 742
>IS1647
Length = 878
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 211 gttccaggtacagcc 225
|||||||||||||||
Sbjct: 222 gttccaggtacagcc 208
>ISAeme24
Length = 1557
Score = 28.2 bits (14), Expect = 5.5
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 40 ggggccgatcagctcgat 57
||||| ||||||||||||
Sbjct: 715 ggggcggatcagctcgat 732
>ISSusp3
Length = 1434
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 199 cgaagttcggcagt 212
||||||||||||||
Sbjct: 460 cgaagttcggcagt 447
>ISBps3
Length = 1133
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 86 ccgatcgacaccat 99
||||||||||||||
Sbjct: 705 ccgatcgacaccat 718
>ISRel16
Length = 2597
Score = 28.2 bits (14), Expect = 5.5
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 35 cggatggggccgatcagc 52
|||||| |||||||||||
Sbjct: 1496 cggatgcggccgatcagc 1479
>ISMdi11
Length = 1053
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 172 catcgcgcaggtca 185
||||||||||||||
Sbjct: 467 catcgcgcaggtca 480
>ISBmu11
Length = 1626
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 53 tcgatcatgggcga 66
||||||||||||||
Sbjct: 1168 tcgatcatgggcga 1155
>ISRba2
Length = 1365
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 256 ttcgcttgatcagc 269
||||||||||||||
Sbjct: 968 ttcgcttgatcagc 955
>ISPst9
Length = 2472
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 136 ctgggtgctccgcc 149
||||||||||||||
Sbjct: 1331 ctgggtgctccgcc 1344
>IS8402
Length = 1322
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 94 caccatgaagatgt 107
||||||||||||||
Sbjct: 477 caccatgaagatgt 464
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_138_length_278_cov_0.721393_ID_5446
(278 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISGdi9 | IS481 | Gluconacetobacter diazotrophicus | 32 | 0.35 | |
| ISBthe5 | IS66 | Bacteroides thetaiotaomicron | 32 | 0.35 | |
| ISDha16 | IS701 | Desulfitobacterium hafniense | 32 | 0.35 | |
| IS2606 | IS256 | - | Mycobacterium ulcerans | 30 | 1.4 |
| ISHarch17 | IS200/IS605 | IS1341 | Halophilic archaeon | 28 | 5.5 |
| ISHala4 | IS701 | Halobiforma lacisalsi | 28 | 5.5 | |
| ISVa5 | IS66 | Vibrio anguillarum | 28 | 5.5 | |
| ISThsp5 | IS21 | Thiomonas sp. | 28 | 5.5 | |
| IS4321 | IS110 | IS1111 | Enterobacter aerogenes | 28 | 5.5 |
| IS4321R | IS110 | IS1111 | Enterobacter aerogenes | 28 | 5.5 |
| IS4321L | IS110 | IS1111 | Enterobacter aerogenes | 28 | 5.5 |
| IS1419 | IS481 | - | Burkholderia glumae | 28 | 5.5 |
>ISGdi9
Length = 1044
Score = 32.2 bits (16), Expect = 0.35
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 27 tacgaaacacatgacc 42
||||||||||||||||
Sbjct: 867 tacgaaacacatgacc 882
>ISBthe5
Length = 2537
Score = 32.2 bits (16), Expect = 0.35
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 218 ggaccacgatgaaact 233
||||||||||||||||
Sbjct: 568 ggaccacgatgaaact 583
>ISDha16
Length = 1364
Score = 32.2 bits (16), Expect = 0.35
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 122 ttgaacaagggttgct 137
||||||||||||||||
Sbjct: 564 ttgaacaagggttgct 549
>IS2606
Length = 1404
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 168 ggcgatgaccaaaac 182
|||||||||||||||
Sbjct: 232 ggcgatgaccaaaac 246
>ISHarch17
Length = 1585
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 99 tgactacaacggtg 112
||||||||||||||
Sbjct: 1290 tgactacaacggtg 1303
>ISHala4
Length = 1280
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 171 gatgaccaaaacca 184
||||||||||||||
Sbjct: 512 gatgaccaaaacca 525
>ISVa5
Length = 2381
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 98 gtgactacaacggt 111
||||||||||||||
Sbjct: 1733 gtgactacaacggt 1746
>ISThsp5
Length = 2652
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 171 gatgaccaaaacca 184
||||||||||||||
Sbjct: 2535 gatgaccaaaacca 2548
>IS4321
Length = 1327
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 62 gatagttctccgaa 75
||||||||||||||
Sbjct: 67 gatagttctccgaa 54
>IS4321R
Length = 1326
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 62 gatagttctccgaa 75
||||||||||||||
Sbjct: 66 gatagttctccgaa 53
>IS4321L
Length = 1327
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 62 gatagttctccgaa 75
||||||||||||||
Sbjct: 67 gatagttctccgaa 54
>IS1419
Length = 1215
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 175 accaaaaccaaggc 188
||||||||||||||
Sbjct: 893 accaaaaccaaggc 906
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_139_length_278_cov_0.726368_ID_5448
(278 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISStro2 | IS5 | ISL2 | Streptosporangium roseum | 32 | 0.35 |
| ISPa43 | Tn3 | Pseudomonas aeruginosa | 30 | 1.4 | |
| ISStsp6 | IS5 | ISL2 | Streptomyces sp | 30 | 1.4 |
| ISGau7 | IS21 | Gemmatimonas aurantiaca | 30 | 1.4 | |
| ISMsm12 | IS1380 | Mycobacterium smegmatis | 30 | 1.4 | |
| ISAnsp12 | IS66 | Anaeromyxobacter sp. | 30 | 1.4 | |
| ISMex22 | Tn3 | Methylobacterium extorquens | 30 | 1.4 | |
| ISRta2 | IS256 | Ralstonia taiwanensis | 30 | 1.4 | |
| ISSpo9 | IS5 | IS903 | Silicibacter pomeroyi | 30 | 1.4 |
| ISHma1 | IS4 | ISH8 | Haloarcula marismortui | 30 | 1.4 |
| ISAzo6 | IS1634 | Azoarcus sp. | 30 | 1.4 | |
| ISBcen2 | IS110 | IS1111 | Burkholderia cenocepacia | 30 | 1.4 |
| IS220 | IS1380 | - | Mycobacterium fortuitum | 30 | 1.4 |
| TnXo19 | Tn3 | Xanthomonas oryzae | 28 | 5.5 | |
| ISMno25 | IS110 | IS1111 | Methylobacterium nodulans | 28 | 5.5 |
| ISPa56 | IS3 | IS2 | Pseudomonas aeruginosa | 28 | 5.5 |
| ISBmu5 | IS3 | IS150 | Burkholderia multivorans | 28 | 5.5 |
| ISPsp8 | IS30 | Pseudomonas sp. | 28 | 5.5 | |
| ISPsp7 | IS30 | Pseudomonas sp. | 28 | 5.5 | |
| ISMyma9 | IS21 | Mycobacterium marinum | 28 | 5.5 | |
| ISHbo4 | IS200/IS605 | IS605 | Halogeometricum borinquense | 28 | 5.5 |
| ISSal1 | IS66 | Shewanella algae | 28 | 5.5 | |
| ISSiac5 | ISLre2 | Singulisphaera acidiphila | 28 | 5.5 | |
| ISMrh1 | IS256 | Mycobacterium rhodesiae | 28 | 5.5 | |
| ISStsp7 | IS5 | ISL2 | Streptomyces sp | 28 | 5.5 |
| ISBj2_B | IS5 | IS5 | Bradyrhizobium japonicum | 28 | 5.5 |
| ISFsp12 | ISAzo13 | Frankia sp. | 28 | 5.5 | |
| ISNha3 | IS1380 | Nitrobacter hamburgensis | 28 | 5.5 | |
| ISPlpa1 | IS1380 | Plesiocystis pacifica | 28 | 5.5 | |
| ISAde1 | IS66 | Anaeromyxobacter dehalogenans | 28 | 5.5 | |
| ISCARN116 | IS3 | IS407 | Metagenomic data from CARNOULES | 28 | 5.5 |
| ISSav5 | IS481 | Streptomyces avermitilis | 28 | 5.5 | |
| ISAcma26 | IS21 | Acaryochloris marina | 28 | 5.5 | |
| ISThsp12 | IS1634 | Thiomonas sp. | 28 | 5.5 | |
| ISAzo14 | IS1634 | Azoarcus sp. | 28 | 5.5 | |
| ISCARN35 | IS4 | IS4 | Metagenomic data from CARNOULES | 28 | 5.5 |
| ISStau5 | IS66 | ISBst12 | Stigmatella aurantiaca | 28 | 5.5 |
| ISSba14 | Tn3 | Shewanella baltica | 28 | 5.5 | |
| ISMno2 | IS66 | ISBst12 | Methylobacterium nodulans | 28 | 5.5 |
| ISAeh1 | IS66 | Alkalilimnicola ehrlichei | 28 | 5.5 | |
| ISLxc4 | IS30 | Leifsonia xyli | 28 | 5.5 | |
| ISHar5 | IS30 | Herminiimonas arsenicoxydans | 28 | 5.5 | |
| ISPepr5 | IS21 | Pelobacter propionicus | 28 | 5.5 | |
| ISBmu6 | IS3 | IS150 | Burkholderia multivorans | 28 | 5.5 |
| ISGur6 | IS3 | IS3 | Geobacter uraniireducens | 28 | 5.5 |
| ISBcen10 | IS3 | IS150 | Burkholderia cenocepacia | 28 | 5.5 |
| ISBcen16 | IS3 | IS150 | Burkholderia cenocepacia | 28 | 5.5 |
| ISBcen14 | IS66 | Burkholderia cenocepacia | 28 | 5.5 | |
| ISDra4 | IS630 | Deinococcus radiodurans | 28 | 5.5 | |
| ISLxx4 | IS481 | Leifsonia xyli | 28 | 5.5 | |
| ISBlo12 | IS607 | Bifidobacterium longum | 28 | 5.5 | |
| ISRm9 | IS21 | - | Rhizobium meliloti | 28 | 5.5 |
| IS900 | IS110 | - | Mycobacterium paratuberculosis | 28 | 5.5 |
| IS1394 | IS30 | - | Pseudomonas alcaligenes | 28 | 5.5 |
| IS1380B | IS1380 | - | Acetobacter pasteurianus | 28 | 5.5 |
| IS1380A | IS1380 | - | Acetobacter pasteurianus | 28 | 5.5 |
| IS117 | IS110 | - | Streptomyces coelicolor | 28 | 5.5 |
| IS112 | IS5 | ISL2 | Streptomyces albus | 28 | 5.5 |
| IS1086 | IS30 | - | Ralstonia metallidurans | 28 | 5.5 |
>ISStro2
Length = 912
Score = 32.2 bits (16), Expect = 0.35
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 117 cgcatcgagcgacagc 132
||||||||||||||||
Sbjct: 831 cgcatcgagcgacagc 846
>ISPa43
Length = 19903
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 73 agctcggcgatggtg 87
|||||||||||||||
Sbjct: 9201 agctcggcgatggtg 9187
>ISStsp6
Length = 1476
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 73 agctcggcgatggtg 87
|||||||||||||||
Sbjct: 1003 agctcggcgatggtg 989
>ISGau7
Length = 2510
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 133 tgcgcggcgtcgagg 147
|||||||||||||||
Sbjct: 992 tgcgcggcgtcgagg 978
>ISMsm12
Length = 3256
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 140 cgtcgaggccgcgct 154
|||||||||||||||
Sbjct: 705 cgtcgaggccgcgct 691
>ISAnsp12
Length = 2926
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 132 ctgcgcggcgtcgag 146
|||||||||||||||
Sbjct: 956 ctgcgcggcgtcgag 942
>ISMex22
Length = 3864
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 117 cgcatcgagcgacag 131
|||||||||||||||
Sbjct: 1896 cgcatcgagcgacag 1882
>ISRta2
Length = 1386
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 141 gtcgaggccgcgctg 155
|||||||||||||||
Sbjct: 955 gtcgaggccgcgctg 969
>ISSpo9
Length = 1049
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 175 tcgaagcgcgtcggg 189
|||||||||||||||
Sbjct: 786 tcgaagcgcgtcggg 800
>ISHma1
Length = 1403
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 140 cgtcgaggccgcgct 154
|||||||||||||||
Sbjct: 370 cgtcgaggccgcgct 384
>ISAzo6
Length = 1925
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 68 cgaggagctcggcga 82
|||||||||||||||
Sbjct: 1091 cgaggagctcggcga 1077
>ISBcen2
Length = 1363
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 112 tgcagcgcatcgagc 126
|||||||||||||||
Sbjct: 925 tgcagcgcatcgagc 939
>IS220
Length = 3257
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 140 cgtcgaggccgcgct 154
|||||||||||||||
Sbjct: 705 cgtcgaggccgcgct 691
>TnXo19
Length = 18767
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 139 gcgtcgaggccgcg 152
||||||||||||||
Sbjct: 18215 gcgtcgaggccgcg 18202
>ISMno25
Length = 1518
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 113 gcagcgcatcgagc 126
||||||||||||||
Sbjct: 671 gcagcgcatcgagc 658
>ISPa56
Length = 1359
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 152 gctgccaggtgagc 165
||||||||||||||
Sbjct: 918 gctgccaggtgagc 931
>ISBmu5
Length = 1447
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 113 gcagcgcatcgagc 126
||||||||||||||
Sbjct: 534 gcagcgcatcgagc 521
>ISPsp8
Length = 1113
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 147 gccgcgctgccagg 160
||||||||||||||
Sbjct: 871 gccgcgctgccagg 858
>ISPsp7
Length = 1113
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 147 gccgcgctgccagg 160
||||||||||||||
Sbjct: 871 gccgcgctgccagg 858
>ISMyma9
Length = 2162
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 156 ccaggtgagcgccg 169
||||||||||||||
Sbjct: 1225 ccaggtgagcgccg 1212
>ISHbo4
Length = 1835
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 182 gcgtcgggtcgcgg 195
||||||||||||||
Sbjct: 1298 gcgtcgggtcgcgg 1311
>ISSal1
Length = 2528
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 112 tgcagcgcatcgag 125
||||||||||||||
Sbjct: 1997 tgcagcgcatcgag 1984
>ISSiac5
Length = 1429
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 139 gcgtcgaggccgcg 152
||||||||||||||
Sbjct: 962 gcgtcgaggccgcg 949
>ISMrh1
Length = 1472
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 132 ctgcgcggcgtcga 145
||||||||||||||
Sbjct: 1295 ctgcgcggcgtcga 1282
>ISStsp7
Length = 976
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 74 gctcggcgatggtg 87
||||||||||||||
Sbjct: 505 gctcggcgatggtg 492
>ISBj2_B
Length = 1509
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 124 agcgacagctgcgc 137
||||||||||||||
Sbjct: 786 agcgacagctgcgc 799
>ISFsp12
Length = 1730
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 140 cgtcgaggccgcgc 153
||||||||||||||
Sbjct: 270 cgtcgaggccgcgc 257
>ISNha3
Length = 1631
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 181 cgcgtcgggtcgcg 194
||||||||||||||
Sbjct: 307 cgcgtcgggtcgcg 294
>ISPlpa1
Length = 1849
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 67 tcgaggagctcggc 80
||||||||||||||
Sbjct: 838 tcgaggagctcggc 825
>ISAde1
Length = 2957
Score = 28.2 bits (14), Expect = 5.5
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 116 gcgcatcgagcgacagct 133
|||||||||||| |||||
Sbjct: 1232 gcgcatcgagcggcagct 1249
>ISCARN116
Length = 1260
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 161 tgagcgccgcgcct 174
||||||||||||||
Sbjct: 387 tgagcgccgcgcct 400
>ISSav5
Length = 1953
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 257 cggcgatctgctcg 270
||||||||||||||
Sbjct: 1681 cggcgatctgctcg 1668
>ISAcma26
Length = 2669
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 95 cgtgggtctcgacg 108
||||||||||||||
Sbjct: 434 cgtgggtctcgacg 421
>ISThsp12
Length = 2004
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 109 aactgcagcgcatc 122
||||||||||||||
Sbjct: 1783 aactgcagcgcatc 1796
>ISAzo14
Length = 1925
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 109 aactgcagcgcatc 122
||||||||||||||
Sbjct: 1713 aactgcagcgcatc 1726
>ISCARN35
Length = 1455
Score = 28.2 bits (14), Expect = 5.5
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 141 gtcgaggccgcgctgcca 158
||||||||||||| ||||
Sbjct: 1190 gtcgaggccgcgcggcca 1173
>ISStau5
Length = 1580
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 149 cgcgctgccaggtg 162
||||||||||||||
Sbjct: 298 cgcgctgccaggtg 285
>ISSba14
Length = 3815
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 204 tggcaggaattcat 217
||||||||||||||
Sbjct: 1863 tggcaggaattcat 1876
>ISMno2
Length = 1419
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 139 gcgtcgaggccgcg 152
||||||||||||||
Sbjct: 822 gcgtcgaggccgcg 809
>ISAeh1
Length = 2320
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 150 gcgctgccaggtga 163
||||||||||||||
Sbjct: 228 gcgctgccaggtga 215
>ISLxc4
Length = 1311
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 147 gccgcgctgccagg 160
||||||||||||||
Sbjct: 1097 gccgcgctgccagg 1084
>ISHar5
Length = 1253
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 147 gccgcgctgccagg 160
||||||||||||||
Sbjct: 1053 gccgcgctgccagg 1040
>ISPepr5
Length = 2193
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 83 tggtgaagcagtcg 96
||||||||||||||
Sbjct: 2010 tggtgaagcagtcg 1997
>ISBmu6
Length = 1445
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 113 gcagcgcatcgagc 126
||||||||||||||
Sbjct: 535 gcagcgcatcgagc 522
>ISGur6
Length = 1667
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 256 ccggcgatctgctc 269
||||||||||||||
Sbjct: 374 ccggcgatctgctc 361
>ISBcen10
Length = 1447
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 113 gcagcgcatcgagc 126
||||||||||||||
Sbjct: 534 gcagcgcatcgagc 521
>ISBcen16
Length = 1445
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 113 gcagcgcatcgagc 126
||||||||||||||
Sbjct: 535 gcagcgcatcgagc 522
>ISBcen14
Length = 2516
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 126 cgacagctgcgcgg 139
||||||||||||||
Sbjct: 772 cgacagctgcgcgg 759
>ISDra4
Length = 1048
Score = 28.2 bits (14), Expect = 5.5
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 94 tcgtgggtctcgacgaac 111
||||||||||| ||||||
Sbjct: 823 tcgtgggtctccacgaac 840
>ISLxx4
Length = 1110
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 254 cgccggcgatctgc 267
||||||||||||||
Sbjct: 399 cgccggcgatctgc 386
>ISBlo12
Length = 2003
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 189 gtcgcggcggctca 202
||||||||||||||
Sbjct: 1363 gtcgcggcggctca 1350
>ISRm9
Length = 2798
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 141 gtcgaggccgcgct 154
||||||||||||||
Sbjct: 1517 gtcgaggccgcgct 1530
>IS900
Length = 1451
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 143 cgaggccgcgctgc 156
||||||||||||||
Sbjct: 343 cgaggccgcgctgc 356
>IS1394
Length = 1100
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 147 gccgcgctgccagg 160
||||||||||||||
Sbjct: 870 gccgcgctgccagg 857
>IS1380B
Length = 1665
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 44 gtgccaggcccatg 57
||||||||||||||
Sbjct: 335 gtgccaggcccatg 322
>IS1380A
Length = 1665
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 44 gtgccaggcccatg 57
||||||||||||||
Sbjct: 335 gtgccaggcccatg 322
>IS117
Length = 2527
Score = 28.2 bits (14), Expect = 5.5
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 255 gccggcgatctgctcgcg 272
|||| |||||||||||||
Sbjct: 449 gccgtcgatctgctcgcg 432
>IS112
Length = 883
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 74 gctcggcgatggtg 87
||||||||||||||
Sbjct: 408 gctcggcgatggtg 395
>IS1086
Length = 1106
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 147 gccgcgctgccagg 160
||||||||||||||
Sbjct: 874 gccgcgctgccagg 861
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_140_length_278_cov_0.726368_ID_5450
(278 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISSst1 | IS3 | IS407 | Sagittula stellata | 34 | 0.088 |
| ISAzvi9 | IS3 | IS3 | Azotobacter vinelandii | 34 | 0.088 |
| ISRle5 | IS3 | IS407 | Rhizobium leguminosarum | 32 | 0.35 |
| ISAar31 | IS630 | Arthrobacter arilaitensis | 30 | 1.4 | |
| ISPca2 | IS3 | IS51 | Pelobacter carbinolicus | 30 | 1.4 |
| ISPpa3 | IS5 | IS903 | Paracoccus pantotrophus | 30 | 1.4 |
| ISAve2 | IS5 | IS903 | Aeromonas veronii | 28 | 5.5 |
| ISStma17 | IS3 | IS51 | Stenotrophomonas maltophilia | 28 | 5.5 |
| ISAzs17 | Tn3 | Azospirillum sp. | 28 | 5.5 | |
| ISRel21 | IS3 | IS407 | Rhizobium etli | 28 | 5.5 |
| ISVsp14 | IS4 | IS231 | Verrucomicrobium spinosum | 28 | 5.5 |
| ISRssp3 | IS6 | Roseovarius sp. | 28 | 5.5 | |
| ISRjo3 | ISNCY | ISDol1 | Rhodococcus jostii | 28 | 5.5 |
| ISMno31 | IS3 | IS150 | Methylobacterium nodulans | 28 | 5.5 |
| ISBli5 | IS1380 | Brevibacterium linens | 28 | 5.5 | |
| ISAnsp11 | IS3 | IS3 | Anaeromyxobacter sp. | 28 | 5.5 |
| ISMdi3 | IS3 | IS407 | Methylobacterium dichloromethanicum | 28 | 5.5 |
| ISAli20 | Tn3 | Azospirillum lipoferum | 28 | 5.5 | |
| ISAfe4 | IS66 | Acidithiobacillus ferrooxidans | 28 | 5.5 | |
| ISCwa4 | IS66 | ISBst12 | Crocosphaera watsonii | 28 | 5.5 |
| ISSisp1 | IS3 | IS407 | Silicibacter sp. | 28 | 5.5 |
| ISBmu1 | IS21 | Burkholderia multivorans | 28 | 5.5 | |
| ISBlo6 | ISL3 | Bifidobacterium longum | 28 | 5.5 | |
| IS4811 | IS5 | IS1031 | Streptomyces lividans | 28 | 5.5 |
| IS3000 | Tn3 | - | Escherichia coli | 28 | 5.5 |
>ISSst1
Length = 1167
Score = 34.2 bits (17), Expect = 0.088
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 52 cacgatcttcttcagcc 68
|||||||||||||||||
Sbjct: 291 cacgatcttcttcagcc 275
>ISAzvi9
Length = 1246
Score = 34.2 bits (17), Expect = 0.088
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 147 cgttcatggcccaggcgatca 167
|||||||||||||| ||||||
Sbjct: 845 cgttcatggcccagccgatca 825
>ISRle5
Length = 1196
Score = 32.2 bits (16), Expect = 0.35
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 53 acgatcttcttcagcc 68
||||||||||||||||
Sbjct: 268 acgatcttcttcagcc 253
>ISAar31
Length = 1155
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 50 atcacgatcttcttc 64
|||||||||||||||
Sbjct: 877 atcacgatcttcttc 863
>ISPca2
Length = 1218
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 131 gccgggatgtcttcg 145
|||||||||||||||
Sbjct: 1062 gccgggatgtcttcg 1076
>ISPpa3
Length = 1054
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 79 agtcgagcccggcca 93
|||||||||||||||
Sbjct: 329 agtcgagcccggcca 315
>ISAve2
Length = 1062
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 193 catgggcacgccgc 206
||||||||||||||
Sbjct: 88 catgggcacgccgc 101
>ISStma17
Length = 1321
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 246 tgtcggcaccgtag 259
||||||||||||||
Sbjct: 578 tgtcggcaccgtag 565
>ISAzs17
Length = 7252
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 95 ccgccggcgaccag 108
||||||||||||||
Sbjct: 2026 ccgccggcgaccag 2039
>ISRel21
Length = 1200
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 53 acgatcttcttcag 66
||||||||||||||
Sbjct: 272 acgatcttcttcag 259
>ISVsp14
Length = 1351
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 178 gcgcagggcttttt 191
||||||||||||||
Sbjct: 325 gcgcagggcttttt 338
>ISRssp3
Length = 810
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 208 tgaaatcacgacct 221
||||||||||||||
Sbjct: 311 tgaaatcacgacct 298
>ISRjo3
Length = 1638
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 85 gcccggccagccgc 98
||||||||||||||
Sbjct: 1004 gcccggccagccgc 991
>ISMno31
Length = 1510
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 87 ccggccagccgccg 100
||||||||||||||
Sbjct: 314 ccggccagccgccg 301
>ISBli5
Length = 1687
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 141 cttcgccgttcatg 154
||||||||||||||
Sbjct: 274 cttcgccgttcatg 287
>ISAnsp11
Length = 1510
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 82 cgagcccggccagc 95
||||||||||||||
Sbjct: 292 cgagcccggccagc 279
>ISMdi3
Length = 1246
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 261 agccgacatagacc 274
||||||||||||||
Sbjct: 630 agccgacatagacc 643
>ISAli20
Length = 3828
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 153 tggcccaggcgatc 166
||||||||||||||
Sbjct: 3455 tggcccaggcgatc 3468
>ISAfe4
Length = 2477
Score = 28.2 bits (14), Expect = 5.5
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 169 ggtttcgtcgcgcagggc 186
|||||| |||||||||||
Sbjct: 952 ggtttcatcgcgcagggc 935
>ISCwa4
Length = 1870
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 61 cttcagccacttgc 74
||||||||||||||
Sbjct: 529 cttcagccacttgc 516
>ISSisp1
Length = 1236
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 53 acgatcttcttcag 66
||||||||||||||
Sbjct: 290 acgatcttcttcag 277
>ISBmu1
Length = 2581
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 24 tcgggccgtcgtgc 37
||||||||||||||
Sbjct: 1411 tcgggccgtcgtgc 1424
>ISBlo6
Length = 1330
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 100 ggcgaccagacgca 113
||||||||||||||
Sbjct: 722 ggcgaccagacgca 709
>IS4811
Length = 5396
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 173 tcgtcgcgcagggc 186
||||||||||||||
Sbjct: 1710 tcgtcgcgcagggc 1697
>IS3000
Length = 3235
Score = 28.2 bits (14), Expect = 5.5
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 250 ggcaccgtagtagccgac 267
||||||||||||| ||||
Sbjct: 943 ggcaccgtagtagtcgac 926
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_141_length_278_cov_1.44776_ID_5452
(278 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISCte5 | IS5 | Comamonas testosteroni | 36 | 0.022 | |
| ISAar42 | ISL3 | Arthrobacter arilaitensis | 32 | 0.35 | |
| ISPa62 | IS110 | IS1111 | Pseudomonas aeruginosa | 30 | 1.4 |
| ISPko7 | IS110 | IS1111 | Paracoccus kondratievae | 30 | 1.4 |
| ISNov1 | ISKra4 | ISAzba1 | Novosphingobium sp. | 30 | 1.4 |
| ISScl2 | ISAzo13 | Streptomyces clavuligerus | 30 | 1.4 | |
| ISRsp9 | IS6 | Rhizhobium sp. | 30 | 1.4 | |
| ISTha1 | ISAs1 | Thauera sp. | 30 | 1.4 | |
| ISPst6 | IS110 | IS1111 | Pseudomonas stutzeri | 30 | 1.4 |
| ISTfu1 | IS200/IS605 | Thermobifida fusca | 30 | 1.4 | |
| ISAeme2 | ISAs1 | Aeromonas media | 28 | 5.5 | |
| ISMno24 | IS91 | Methylobacterium nodulans | 28 | 5.5 | |
| ISMno16 | IS110 | IS1111 | Methylobacterium nodulans | 28 | 5.5 |
| ISPa53 | IS110 | IS1111 | Pseudomonas aeruginosa | 28 | 5.5 |
| ISNpe22 | IS1595 | ISH4 | Natrinema pellirubrum | 28 | 5.5 |
| ISMfu1 | ISAzo13 | Myxococcus fulvus | 28 | 5.5 | |
| ISPa43 | Tn3 | Pseudomonas aeruginosa | 28 | 5.5 | |
| ISPa40 | Tn3 | Pseudomonas aeruginosa | 28 | 5.5 | |
| ISPaen3 | IS5 | IS427 | Paenibacillus sp. | 28 | 5.5 |
| ISFsp7 | IS5 | ISL2 | Frankia sp. | 28 | 5.5 |
| ISSro1 | IS5 | ISL2 | Streptomyces roseosporus | 28 | 5.5 |
| ISBmu30 | IS66 | Burkholderia multivorans | 28 | 5.5 | |
| ISCap1 | ISAzo13 | Candidatus Accumulibacter phosphatis | 28 | 5.5 | |
| ISStau6 | ISAzo13 | Stigmatella aurantiaca | 28 | 5.5 | |
| ISStsp2 | ISAzo13 | Streptomyces sp. | 28 | 5.5 | |
| ISAzo13 | ISAzo13 | Azoarcus sp. | 28 | 5.5 | |
| ISArsp6 | Tn3 | Arthrobacter sp. | 28 | 5.5 | |
| ISAau3 | IS5 | IS5 | Arthrobacter aurescens | 28 | 5.5 |
| ISRop1 | IS1380 | Rhodococcus opacus | 28 | 5.5 | |
| ISRjo1 | IS1380 | Rhodococcus jostii | 28 | 5.5 | |
| ISMex23 | IS200/IS605 | IS1341 | Methylobacterium extorquens | 28 | 5.5 |
| ISGob5 | ISAs1 | Gemmata obscuriglobus | 28 | 5.5 | |
| ISVer2 | ISAs1 | Bacterium Ellin514 | 28 | 5.5 | |
| ISThsp16 | IS1182 | Thiomonas sp. | 28 | 5.5 | |
| ISAzo39 | IS5 | IS5 | Azoarcus sp. | 28 | 5.5 |
| ISAisp4 | IS110 | Acidovorax sp. | 28 | 5.5 | |
| ISAZo16 | IS21 | Azoarcus sp. | 28 | 5.5 | |
| ISGbe2 | IS3 | IS2 | Granulibacter bethesdensis | 28 | 5.5 |
| ISMpe1 | IS3 | IS3 | Methylibium petroleiphilum | 28 | 5.5 |
| ISDra7 | IS4 | ISPepr1 | Deinococcus radiodurans | 28 | 5.5 |
| ISSav1 | IS4 | IS4 | Streptomyces avermitilis | 28 | 5.5 |
| ISXo7 | IS630 | - | Xanthomonas oryzae | 28 | 5.5 |
| ISSiac1 | IS701 | Singulisphaera acidiphila | 28 | 5.5 | |
| ISPsp3 | IS5 | IS5 | Pseudomonas sp. | 28 | 5.5 |
| IS1650 | IS5 | IS427 | Streptomyces coelicolor | 28 | 5.5 |
| IS1491 | IS21 | - | Pseudomonas alcaligenes | 28 | 5.5 |
| IS2621 | IS4 | ISPepr1 | Deinococcus radiodurans | 28 | 5.5 |
| IS1096 | ISL3 | - | Mycobacterium smegmatis | 28 | 5.5 |
>ISCte5
Length = 1321
Score = 36.2 bits (18), Expect = 0.022
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 71 gctggcgagcaggaacagcgag 92
||||||||||| ||||||||||
Sbjct: 193 gctggcgagcatgaacagcgag 214
>ISAar42
Length = 1443
Score = 32.2 bits (16), Expect = 0.35
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 130 gcttcatggtgcggcc 145
||||||||||||||||
Sbjct: 1240 gcttcatggtgcggcc 1225
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 55 cggtgttcgcggtg 68
||||||||||||||
Sbjct: 544 cggtgttcgcggtg 531
>ISPa62
Length = 1382
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 122 ggcaatgcgcttcat 136
|||||||||||||||
Sbjct: 87 ggcaatgcgcttcat 73
>ISPko7
Length = 1140
Score = 30.2 bits (15), Expect = 1.4
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 134 catggtgcggcccggccgg 152
|||| ||||||||||||||
Sbjct: 924 catgctgcggcccggccgg 942
>ISNov1
Length = 2277
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 66 gtggcgctggcgagc 80
|||||||||||||||
Sbjct: 1120 gtggcgctggcgagc 1134
>ISScl2
Length = 1819
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 63 gcggtggcgctggcg 77
|||||||||||||||
Sbjct: 105 gcggtggcgctggcg 119
>ISRsp9
Length = 818
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 65 ggtggcgctggcgag 79
|||||||||||||||
Sbjct: 732 ggtggcgctggcgag 718
>ISTha1
Length = 1301
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 206 ccgagtgcggagacc 220
|||||||||||||||
Sbjct: 18 ccgagtgcggagacc 4
>ISPst6
Length = 1371
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 62 cgcggtggcgctggc 76
|||||||||||||||
Sbjct: 1017 cgcggtggcgctggc 1031
>ISTfu1
Length = 1743
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 195 agtcccggctgccga 209
|||||||||||||||
Sbjct: 391 agtcccggctgccga 405
>ISAeme2
Length = 1212
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 11 gccgttgagcgcca 24
||||||||||||||
Sbjct: 855 gccgttgagcgcca 868
>ISMno24
Length = 2157
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 232 gggcagcaggtcgg 245
||||||||||||||
Sbjct: 966 gggcagcaggtcgg 979
>ISMno16
Length = 1404
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 63 gcggtggcgctggc 76
||||||||||||||
Sbjct: 1014 gcggtggcgctggc 1027
>ISPa53
Length = 1381
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 63 gcggtggcgctggc 76
||||||||||||||
Sbjct: 1018 gcggtggcgctggc 1031
>ISNpe22
Length = 1001
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 16 tgagcgccagcagg 29
||||||||||||||
Sbjct: 672 tgagcgccagcagg 685
>ISMfu1
Length = 1293
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 102 agcgcagcggcgac 115
||||||||||||||
Sbjct: 397 agcgcagcggcgac 384
>ISPa43
Length = 19903
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 237 gcaggtcggtgtcg 250
||||||||||||||
Sbjct: 8972 gcaggtcggtgtcg 8959
>ISPa40
Length = 6592
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 63 gcggtggcgctggc 76
||||||||||||||
Sbjct: 1008 gcggtggcgctggc 995
>ISPaen3
Length = 914
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 92 gatcgcggcaagcg 105
||||||||||||||
Sbjct: 464 gatcgcggcaagcg 477
>ISFsp7
Length = 1041
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 138 gtgcggcccggccg 151
||||||||||||||
Sbjct: 615 gtgcggcccggccg 628
>ISSro1
Length = 897
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 58 tgttcgcggtggcg 71
||||||||||||||
Sbjct: 710 tgttcgcggtggcg 697
>ISBmu30
Length = 2344
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 233 ggcagcaggtcggt 246
||||||||||||||
Sbjct: 2116 ggcagcaggtcggt 2103
>ISCap1
Length = 1311
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 102 agcgcagcggcgac 115
||||||||||||||
Sbjct: 394 agcgcagcggcgac 381
>ISStau6
Length = 1304
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 102 agcgcagcggcgac 115
||||||||||||||
Sbjct: 408 agcgcagcggcgac 395
>ISStsp2
Length = 1752
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 102 agcgcagcggcgac 115
||||||||||||||
Sbjct: 390 agcgcagcggcgac 377
>ISAzo13
Length = 1305
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 102 agcgcagcggcgac 115
||||||||||||||
Sbjct: 400 agcgcagcggcgac 387
>ISArsp6
Length = 26712
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 140 gcggcccggccggc 153
||||||||||||||
Sbjct: 10268 gcggcccggccggc 10281
>ISAau3
Length = 1205
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 252 ggcgaaagcgcagg 265
||||||||||||||
Sbjct: 390 ggcgaaagcgcagg 377
>ISRop1
Length = 4160
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 111 gcgacggtgaaggc 124
||||||||||||||
Sbjct: 3377 gcgacggtgaaggc 3390
>ISRjo1
Length = 1967
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 179 tcggtgtcgatgga 192
||||||||||||||
Sbjct: 1081 tcggtgtcgatgga 1068
>ISMex23
Length = 1390
Score = 28.2 bits (14), Expect = 5.5
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 96 gcggcaagcgcagcggcg 113
||||| ||||||||||||
Sbjct: 796 gcggcgagcgcagcggcg 813
>ISGob5
Length = 1308
Score = 28.2 bits (14), Expect = 5.5
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 15 ttgagcgccagcaggtag 32
|||| |||||||||||||
Sbjct: 759 ttgaccgccagcaggtag 742
>ISVer2
Length = 1231
Score = 28.2 bits (14), Expect = 5.5
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 15 ttgagcgccagcaggtag 32
||||||||||||| ||||
Sbjct: 662 ttgagcgccagcacgtag 645
>ISThsp16
Length = 1602
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 15 ttgagcgccagcag 28
||||||||||||||
Sbjct: 1150 ttgagcgccagcag 1137
>ISAzo39
Length = 1277
Score = 28.2 bits (14), Expect = 5.5
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 41 gtcggcgaacatgtcggt 58
||||||||||| ||||||
Sbjct: 117 gtcggcgaacaggtcggt 100
>ISAisp4
Length = 1614
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 2 ggcgatgaagccgt 15
||||||||||||||
Sbjct: 1512 ggcgatgaagccgt 1499
>ISAZo16
Length = 2485
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 58 tgttcgcggtggcg 71
||||||||||||||
Sbjct: 1602 tgttcgcggtggcg 1615
>ISGbe2
Length = 1352
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 230 cggggcagcaggtc 243
||||||||||||||
Sbjct: 608 cggggcagcaggtc 595
>ISMpe1
Length = 1295
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 65 ggtggcgctggcga 78
||||||||||||||
Sbjct: 226 ggtggcgctggcga 239
>ISDra7
Length = 1322
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 80 caggaacagcgaga 93
||||||||||||||
Sbjct: 178 caggaacagcgaga 165
>ISSav1
Length = 1776
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 110 ggcgacggtgaagg 123
||||||||||||||
Sbjct: 1268 ggcgacggtgaagg 1255
>ISXo7
Length = 1114
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 104 cgcagcggcgacgg 117
||||||||||||||
Sbjct: 256 cgcagcggcgacgg 269
>ISSiac1
Length = 1358
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 150 cggcggtgaggaag 163
||||||||||||||
Sbjct: 308 cggcggtgaggaag 295
>ISPsp3
Length = 1190
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 252 ggcgaaagcgcagg 265
||||||||||||||
Sbjct: 383 ggcgaaagcgcagg 370
>IS1650
Length = 898
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 111 gcgacggtgaaggc 124
||||||||||||||
Sbjct: 457 gcgacggtgaaggc 470
>IS1491
Length = 2481
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 95 cgcggcaagcgcag 108
||||||||||||||
Sbjct: 2076 cgcggcaagcgcag 2063
>IS2621
Length = 1322
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 80 caggaacagcgaga 93
||||||||||||||
Sbjct: 178 caggaacagcgaga 165
>IS1096
Length = 2259
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 133 tcatggtgcggccc 146
||||||||||||||
Sbjct: 1162 tcatggtgcggccc 1149
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_142_length_278_cov_0.726368_ID_5454
(278 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| IS2606 | IS256 | - | Mycobacterium ulcerans | 40 | 0.001 |
| ISMtsp19 | IS701 | Methylobacterium sp. | 32 | 0.35 | |
| ISPko3 | IS5 | IS903 | Paracoccus kondratievae | 30 | 1.4 |
| ISAar39 | ISL3 | Arthrobacter arilaitensis | 30 | 1.4 | |
| ISAzba8 | IS256 | Azospirillum brasilense | 30 | 1.4 | |
| ISBrsp2 | IS1182 | Bradyrhizobium sp. | 30 | 1.4 | |
| ISCARN27 | IS256 | Metagenomic data from CARNOULES | 30 | 1.4 | |
| ISCARN3 | IS21 | Metagenomic data from CARNOULES | 30 | 1.4 | |
| ISPosp2 | IS701 | Polaromonas sp. | 30 | 1.4 | |
| ISFsp3 | IS21 | Frankia sp. | 30 | 1.4 | |
| TnAs3 | Tn3 | Aeromonas salmonicida | 28 | 5.5 | |
| ISBmu5 | IS3 | IS150 | Burkholderia multivorans | 28 | 5.5 |
| ISHhu4 | IS200/IS605 | IS1341 | Halobacterium hubeiense | 28 | 5.5 |
| ISCasp2 | ISKra4 | ISKra4 | Calothrix sp. | 28 | 5.5 |
| ISSiac4 | ISKra4 | ISKra4 | Singulisphaera acidiphila | 28 | 5.5 |
| ISPa43 | Tn3 | Pseudomonas aeruginosa | 28 | 5.5 | |
| ISAzs26 | ISKra4 | ISAzba1 | Azospirillum sp. | 28 | 5.5 |
| ISAzs13 | ISL3 | Azospirillum sp. | 28 | 5.5 | |
| ISShes11 | Tn3 | Shewanella sp. | 28 | 5.5 | |
| ISScl2 | ISAzo13 | Streptomyces clavuligerus | 28 | 5.5 | |
| ISMno23 | IS91 | Methylobacterium nodulans | 28 | 5.5 | |
| ISMra3 | IS256 | Methylobacterium radiotolerans | 28 | 5.5 | |
| ISAzba1 | ISKra4 | ISAzba1 | Azospirillum brasilense | 28 | 5.5 |
| ISCli1 | IS1380 | Corynebacterium lipophiloflavum | 28 | 5.5 | |
| ISRssp9 | IS1380 | Roseovarius sp. | 28 | 5.5 | |
| ISPosp7 | IS1380 | Polaromonas sp. | 28 | 5.5 | |
| ISApr8 | IS1380 | alpha proteobacterium | 28 | 5.5 | |
| ISMsi5 | IS3 | IS3 | Methylocella silvestris | 28 | 5.5 |
| ISCARN48 | IS66 | Metagenomic data from CARNOULES | 28 | 5.5 | |
| ISGdi4 | IS630 | Gluconacetobacter diazotrophicus | 28 | 5.5 | |
| ISApr6 | IS66 | Alpha proteobacterium | 28 | 5.5 | |
| ISNha5 | IS1595 | ISNha5 | Nitrobacter hamburgensis | 28 | 5.5 |
| ISPre3 | IS66 | Pseudomonas resinovorans | 28 | 5.5 | |
| ISSme2 | IS21 | Sinorhizobium medicae | 28 | 5.5 | |
| ISGur9 | IS21 | Geobacter uraniumreducens | 28 | 5.5 | |
| ISRel2 | IS481 | Rhizobium etli | 28 | 5.5 | |
| ISSpma1 | IS3 | IS407 | Sphingopyxis macrogoltabida | 28 | 5.5 |
| ISRme12 | IS3 | IS150 | Ralstonia metallidurans | 28 | 5.5 |
| ISSav2 | IS701 | Streptomyces avermitilis | 28 | 5.5 | |
| ISNeu1 | IS982 | Nitrosomonas europaea | 28 | 5.5 | |
| ISSru3 | IS1 | Salinibacter ruber | 28 | 5.5 | |
| ISFsp4 | IS200/IS605 | Frankia sp. | 28 | 5.5 | |
| IS884 | IS110 | IS1111 | Ralstonia eutropha | 28 | 5.5 |
| ISBcen5 | IS110 | IS1111 | Burkholderia cenocepacia | 28 | 5.5 |
| ISRso11 | IS3 | IS150 | Ralstonia solanacearum | 28 | 5.5 |
| IS666 | IS256 | - | Mycobacterium avium | 28 | 5.5 |
| IS641 | IS4 | IS4Sa | Bacillus halodurans | 28 | 5.5 |
| IS6120 | IS256 | - | Mycobacterium smegmatis | 28 | 5.5 |
| IS1071 | Tn3 | - | Alcaligenes sp | 28 | 5.5 |
>IS2606
Length = 1404
Score = 40.1 bits (20), Expect = 0.001
Identities = 35/40 (87%)
Strand = Plus / Plus
Query: 162 cgctgaacgcccgctacagtcgggcgatgagggcgcgtgg 201
|||| |||||||||||| | || ||||| |||||||||||
Sbjct: 1179 cgctcaacgcccgctaccgccgtgcgatcagggcgcgtgg 1218
>ISMtsp19
Length = 1486
Score = 32.2 bits (16), Expect = 0.35
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 151 cggcgacccggcgctg 166
||||||||||||||||
Sbjct: 169 cggcgacccggcgctg 154
>ISPko3
Length = 1017
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 117 gccagcgttaccgcc 131
|||||||||||||||
Sbjct: 631 gccagcgttaccgcc 645
>ISAar39
Length = 1433
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 58 gacctcggtcagcga 72
|||||||||||||||
Sbjct: 1214 gacctcggtcagcga 1200
>ISAzba8
Length = 1321
Score = 30.2 bits (15), Expect = 1.4
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 154 cgacccggcgctgaacgcc 172
|||||||||||||| ||||
Sbjct: 325 cgacccggcgctgatcgcc 343
>ISBrsp2
Length = 1547
Score = 30.2 bits (15), Expect = 1.4
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 213 agcgctgcagcggcgatga 231
||||||||||| |||||||
Sbjct: 939 agcgctgcagctgcgatga 957
>ISCARN27
Length = 1356
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 102 aggtggcggtcatgg 116
|||||||||||||||
Sbjct: 40 aggtggcggtcatgg 54
>ISCARN3
Length = 2070
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 174 gctacagtcgggcga 188
|||||||||||||||
Sbjct: 519 gctacagtcgggcga 533
>ISPosp2
Length = 1484
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 214 gcgctgcagcggcga 228
|||||||||||||||
Sbjct: 180 gcgctgcagcggcga 166
>ISFsp3
Length = 2209
Score = 30.2 bits (15), Expect = 1.4
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 148 ggtcggcgacccggcgctg 166
||||||||||| |||||||
Sbjct: 1530 ggtcggcgacctggcgctg 1512
>TnAs3
Length = 18735
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 145 gctggtcggcgacc 158
||||||||||||||
Sbjct: 15982 gctggtcggcgacc 15969
>ISBmu5
Length = 1447
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 96 gcgcggaggtggcg 109
||||||||||||||
Sbjct: 496 gcgcggaggtggcg 509
>ISHhu4
Length = 1401
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 138 ccgtcacgctggtc 151
||||||||||||||
Sbjct: 679 ccgtcacgctggtc 666
>ISCasp2
Length = 1773
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 226 cgatgaggcattgc 239
||||||||||||||
Sbjct: 1066 cgatgaggcattgc 1079
>ISSiac4
Length = 1519
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 95 ggcgcggaggtggc 108
||||||||||||||
Sbjct: 1422 ggcgcggaggtggc 1409
>ISPa43
Length = 19903
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 158 ccggcgctgaacgc 171
||||||||||||||
Sbjct: 6987 ccggcgctgaacgc 6974
>ISAzs26
Length = 2226
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 148 ggtcggcgacccgg 161
||||||||||||||
Sbjct: 1312 ggtcggcgacccgg 1299
>ISAzs13
Length = 1769
Score = 28.2 bits (14), Expect = 5.5
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 238 gctgaacggcatggcgag 255
||||| ||||||||||||
Sbjct: 492 gctgaccggcatggcgag 475
>ISShes11
Length = 7669
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 145 gctggtcggcgacc 158
||||||||||||||
Sbjct: 4988 gctggtcggcgacc 4975
>ISScl2
Length = 1819
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 46 ggcgctggcggcga 59
||||||||||||||
Sbjct: 110 ggcgctggcggcga 123
>ISMno23
Length = 2271
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 45 gggcgctggcggcg 58
||||||||||||||
Sbjct: 763 gggcgctggcggcg 750
>ISMra3
Length = 1398
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 53 gcggcgacctcggt 66
||||||||||||||
Sbjct: 58 gcggcgacctcggt 71
>ISAzba1
Length = 1465
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 86 ctgctgattggcgc 99
||||||||||||||
Sbjct: 1311 ctgctgattggcgc 1298
>ISCli1
Length = 1687
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 103 ggtggcggtcatgg 116
||||||||||||||
Sbjct: 1302 ggtggcggtcatgg 1315
>ISRssp9
Length = 1716
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 109 ggtcatgggccagc 122
||||||||||||||
Sbjct: 414 ggtcatgggccagc 401
>ISPosp7
Length = 1612
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 42 tcggggcgctggcg 55
||||||||||||||
Sbjct: 435 tcggggcgctggcg 422
>ISApr8
Length = 1667
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 168 acgcccgctacagt 181
||||||||||||||
Sbjct: 1334 acgcccgctacagt 1347
>ISMsi5
Length = 1228
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 151 cggcgacccggcgc 164
||||||||||||||
Sbjct: 886 cggcgacccggcgc 899
>ISCARN48
Length = 2581
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 151 cggcgacccggcgc 164
||||||||||||||
Sbjct: 128 cggcgacccggcgc 115
>ISGdi4
Length = 1176
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 46 ggcgctggcggcga 59
||||||||||||||
Sbjct: 201 ggcgctggcggcga 214
>ISApr6
Length = 2479
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 23 gccagggccgccag 36
||||||||||||||
Sbjct: 578 gccagggccgccag 565
>ISNha5
Length = 3904
Score = 28.2 bits (14), Expect = 5.5
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 63 cggtcagcgactatctct 80
||||| ||||||||||||
Sbjct: 1615 cggtccgcgactatctct 1632
>ISPre3
Length = 2957
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 24 ccagggccgccagg 37
||||||||||||||
Sbjct: 544 ccagggccgccagg 531
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 151 cggcgacccggcgc 164
||||||||||||||
Sbjct: 2451 cggcgacccggcgc 2438
>ISSme2
Length = 2219
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 141 tcacgctggtcggc 154
||||||||||||||
Sbjct: 951 tcacgctggtcggc 938
>ISGur9
Length = 2553
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 11 gaactgtttgtcgc 24
||||||||||||||
Sbjct: 658 gaactgtttgtcgc 671
>ISRel2
Length = 1047
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 46 ggcgctggcggcga 59
||||||||||||||
Sbjct: 342 ggcgctggcggcga 329
>ISSpma1
Length = 1275
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 23 gccagggccgccag 36
||||||||||||||
Sbjct: 853 gccagggccgccag 840
>ISRme12
Length = 1454
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 96 gcgcggaggtggcg 109
||||||||||||||
Sbjct: 500 gcgcggaggtggcg 513
>ISSav2
Length = 1938
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 24 ccagggccgccagg 37
||||||||||||||
Sbjct: 1635 ccagggccgccagg 1622
>ISNeu1
Length = 996
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 212 aagcgctgcagcgg 225
||||||||||||||
Sbjct: 199 aagcgctgcagcgg 212
>ISSru3
Length = 808
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 79 ctccggcctgctga 92
||||||||||||||
Sbjct: 362 ctccggcctgctga 375
>ISFsp4
Length = 1784
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 156 acccggcgctgaac 169
||||||||||||||
Sbjct: 660 acccggcgctgaac 647
>IS884
Length = 1424
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 108 cggtcatgggccag 121
||||||||||||||
Sbjct: 1105 cggtcatgggccag 1092
>ISBcen5
Length = 1425
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 108 cggtcatgggccag 121
||||||||||||||
Sbjct: 1106 cggtcatgggccag 1093
>ISRso11
Length = 1449
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 96 gcgcggaggtggcg 109
||||||||||||||
Sbjct: 950 gcgcggaggtggcg 937
>IS666
Length = 1472
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 52 ggcggcgacctcgg 65
||||||||||||||
Sbjct: 266 ggcggcgacctcgg 253
>IS641
Length = 1405
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 263 catggacaagatta 276
||||||||||||||
Sbjct: 141 catggacaagatta 154
>IS6120
Length = 1486
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 52 ggcggcgacctcgg 65
||||||||||||||
Sbjct: 270 ggcggcgacctcgg 257
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 46 ggcgctggcggcga 59
||||||||||||||
Sbjct: 994 ggcgctggcggcga 1007
>IS1071
Length = 3201
Score = 28.2 bits (14), Expect = 5.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 94 tggcgcggaggtgg 107
||||||||||||||
Sbjct: 3151 tggcgcggaggtgg 3138
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_143_length_277_cov_0.725_ID_5456
(277 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISNph11 | IS200/IS605 | IS1341 | Natronomonas pharaonis | 34 | 0.088 |
| ISNph10 | IS200/IS605 | IS1341 | Natronomonas pharaonis | 34 | 0.088 |
| ISRel15 | IS66 | Rhizobium etli | 32 | 0.35 | |
| ISPepr1 | IS4 | ISPepr1 | Pelobacter propionicus | 32 | 0.35 |
| ISNamo21 | IS200/IS605 | IS1341 | Natronomonas moolapensis | 30 | 1.4 |
| ISAcp2 | IS481 | Acidobacterium capsulatum | 30 | 1.4 | |
| ISCef7 | IS1380 | Corynebacterium efficiens | 30 | 1.4 | |
| ISMxa3 | IS66 | ISBst12 | Myxococcus xanthus | 30 | 1.4 |
| ISAba7 | IS5 | IS903 | Acinetobacter baumannii | 30 | 1.4 |
| ISPa13 | IS4 | ISH8 | Pseudomonas aeruginosa | 30 | 1.4 |
| TnXo19 | Tn3 | Xanthomonas oryzae | 28 | 5.4 | |
| ISHti9 | IS200/IS605 | IS1341 | Halorhabdus tiamatea | 28 | 5.4 |
| ISBj7 | IS6 | Bradyrhizobium japonicum | 28 | 5.4 | |
| ISAzs26 | ISKra4 | ISAzba1 | Azospirillum sp. | 28 | 5.4 |
| ISGeob1 | IS5 | ISL2 | Geodermatophilus obscurus | 28 | 5.4 |
| ISVsp4 | IS66 | Verrucomicrobium spinosum | 28 | 5.4 | |
| ISHwa5 | IS4 | ISH8 | Haloquadratum walsbyi | 28 | 5.4 |
| ISShsa1 | IS5 | IS5 | Shuttleworthia satelles | 28 | 5.4 |
| ISArsp3 | IS110 | Arthrobacter sp. | 28 | 5.4 | |
| ISAzo1 | IS1182 | Azoarcus sp. | 28 | 5.4 | |
| ISDka1 | IS607 | Desulfurococcus kamchatkensis | 28 | 5.4 | |
| ISYps3 | Tn3 | Yersinia pseudotuberculosis | 28 | 5.4 | |
| ISShes13 | IS3 | IS3 | Shewanella sp. | 28 | 5.4 |
| ISCausp2 | IS1595 | ISNha5 | Caulobacter sp. | 28 | 5.4 |
| ISSmu5 | IS982 | Streptococcus mutans | 28 | 5.4 | |
| ISNme5 | IS110 | Neisseria meningitidis | 28 | 5.4 | |
| ISPar1 | IS3 | IS3 | Psychrobacter arcticus | 28 | 5.4 |
| ISDra7 | IS4 | ISPepr1 | Deinococcus radiodurans | 28 | 5.4 |
| ISBlo12 | IS607 | Bifidobacterium longum | 28 | 5.4 | |
| IS1114 | IS5 | - | Xanthomonas oryzae | 28 | 5.4 |
>ISNph11
Length = 1359
Score = 34.2 bits (17), Expect = 0.088
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 139 acaaccagtccggtttc 155
|||||||||||||||||
Sbjct: 439 acaaccagtccggtttc 455
>ISNph10
Length = 1359
Score = 34.2 bits (17), Expect = 0.088
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 139 acaaccagtccggtttc 155
|||||||||||||||||
Sbjct: 439 acaaccagtccggtttc 455
>ISRel15
Length = 2497
Score = 32.2 bits (16), Expect = 0.35
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 205 acccggtggtggccgatccg 224
||||||| ||||||||||||
Sbjct: 712 acccggttgtggccgatccg 693
>ISPepr1
Length = 1556
Score = 32.2 bits (16), Expect = 0.35
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 81 ctgctcagcgcgcggg 96
||||||||||||||||
Sbjct: 398 ctgctcagcgcgcggg 413
>ISNamo21
Length = 1836
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 172 tgacgcgcttcatcg 186
|||||||||||||||
Sbjct: 317 tgacgcgcttcatcg 303
>ISAcp2
Length = 1025
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 168 ggcatgacgcgcttc 182
|||||||||||||||
Sbjct: 507 ggcatgacgcgcttc 521
>ISCef7
Length = 1687
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 253 tcacccgcgctgccg 267
|||||||||||||||
Sbjct: 1325 tcacccgcgctgccg 1339
>ISMxa3
Length = 1926
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 176 gcgcttcatcggccg 190
|||||||||||||||
Sbjct: 1595 gcgcttcatcggccg 1581
>ISAba7
Length = 1039
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 150 ggtttcttcagcaat 164
|||||||||||||||
Sbjct: 29 ggtttcttcagcaat 43
>ISPa13
Length = 1387
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 241 atcaggacatgttca 255
|||||||||||||||
Sbjct: 434 atcaggacatgttca 448
>TnXo19
Length = 18767
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 183 atcggccgcggcga 196
||||||||||||||
Sbjct: 6776 atcggccgcggcga 6789
>ISHti9
Length = 1587
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 232 gcgtgtccgatcag 245
||||||||||||||
Sbjct: 969 gcgtgtccgatcag 982
>ISBj7
Length = 824
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 170 catgacgcgcttca 183
||||||||||||||
Sbjct: 590 catgacgcgcttca 603
>ISAzs26
Length = 2226
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 35 gatgcagacgccgg 48
||||||||||||||
Sbjct: 1099 gatgcagacgccgg 1086
>ISGeob1
Length = 1020
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 230 gggcgtgtccgatc 243
||||||||||||||
Sbjct: 129 gggcgtgtccgatc 142
>ISVsp4
Length = 2518
Score = 28.2 bits (14), Expect = 5.4
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 69 ggcctgccgcaactgctc 86
|||| |||||||||||||
Sbjct: 1006 ggccagccgcaactgctc 989
>ISHwa5
Length = 2256
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 77 gcaactgctcagcg 90
||||||||||||||
Sbjct: 937 gcaactgctcagcg 950
>ISShsa1
Length = 1613
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 237 tccgatcaggacat 250
||||||||||||||
Sbjct: 1161 tccgatcaggacat 1148
>ISArsp3
Length = 1596
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 252 ttcacccgcgctgc 265
||||||||||||||
Sbjct: 306 ttcacccgcgctgc 319
>ISAzo1
Length = 1545
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 148 ccggtttcttcagc 161
||||||||||||||
Sbjct: 1059 ccggtttcttcagc 1072
>ISDka1
Length = 1999
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 21 ggcttcgagtacct 34
||||||||||||||
Sbjct: 477 ggcttcgagtacct 490
>ISYps3
Length = 5723
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 176 gcgcttcatcggcc 189
||||||||||||||
Sbjct: 4558 gcgcttcatcggcc 4545
>ISShes13
Length = 1305
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 53 tggcaaccgcttct 66
||||||||||||||
Sbjct: 1198 tggcaaccgcttct 1185
>ISCausp2
Length = 7915
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 86 cagcgcgcgggcgt 99
||||||||||||||
Sbjct: 6385 cagcgcgcgggcgt 6398
>ISSmu5
Length = 951
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 163 atcagggcatgacg 176
||||||||||||||
Sbjct: 392 atcagggcatgacg 405
>ISNme5
Length = 1143
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 31 acctgatgcagacg 44
||||||||||||||
Sbjct: 591 acctgatgcagacg 578
>ISPar1
Length = 1277
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 149 cggtttcttcagca 162
||||||||||||||
Sbjct: 21 cggtttcttcagca 8
>ISDra7
Length = 1322
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 100 tcaacgacctctac 113
||||||||||||||
Sbjct: 710 tcaacgacctctac 723
>ISBlo12
Length = 2003
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 143 ccagtccggtttct 156
||||||||||||||
Sbjct: 790 ccagtccggtttct 777
>IS1114
Length = 1519
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 206 cccggtggtggccg 219
||||||||||||||
Sbjct: 284 cccggtggtggccg 271
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_144_length_277_cov_0.73_ID_5458
(277 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISHaca1 | IS200/IS605 | IS605 | Haloarcula californiae | 34 | 0.088 |
| TnAs3 | Tn3 | Aeromonas salmonicida | 32 | 0.35 | |
| ISAtc3 | ISL3 | Acidithiobacillus caldus | 32 | 0.35 | |
| ISCARN13 | ISL3 | Metagenomic data from CARNOULES | 32 | 0.35 | |
| ISGob3 | IS66 | ISBst12 | Gemmata obscuriglobus | 32 | 0.35 |
| ISGob2 | IS66 | ISBst12 | Gemmata obscuriglobus | 32 | 0.35 |
| ISPre4 | IS21 | Pseudomonas resinovorans | 32 | 0.35 | |
| ISPpu7 | IS21 | - | Pseudomonas putida | 32 | 0.35 |
| IS1512 | IS256 | - | Mycobacterium gordonae | 32 | 0.35 |
| IS1491 | IS21 | - | Pseudomonas alcaligenes | 32 | 0.35 |
| ISMno25 | IS110 | IS1111 | Methylobacterium nodulans | 30 | 1.4 |
| ISGpo1 | IS256 | Gordonia polyisoprenivorans | 30 | 1.4 | |
| ISPa43 | Tn3 | Pseudomonas aeruginosa | 30 | 1.4 | |
| ISPa22 | IS1182 | Pseudomonas aeruginosa | 30 | 1.4 | |
| ISAzo14 | IS1634 | Azoarcus sp. | 30 | 1.4 | |
| ISAzo12 | IS21 | Azoarcus sp. | 30 | 1.4 | |
| ISAnsp3 | IS66 | Anaeromyxobacter sp. | 30 | 1.4 | |
| IS1511 | IS256 | - | Mycobacterium gordonae | 30 | 1.4 |
| ISAeca4 | IS3 | IS51 | Aeromonas caviae | 28 | 5.4 |
| TnXo19 | Tn3 | Xanthomonas oryzae | 28 | 5.4 | |
| ISAeme3 | IS4 | ISH8 | Aeromonas media | 28 | 5.4 |
| ISPa55 | IS110 | IS1111 | Pseudomonas aeruginosa | 28 | 5.4 |
| ISTni2 | IS481 | Thioalkalivibrio nitratireducens | 28 | 5.4 | |
| ISNha9 | IS256 | Nitrobacter hamburgensis | 28 | 5.4 | |
| ISSoEn2 | IS256 | Primary endosymbiont of Sitophilus oryzae | 28 | 5.4 | |
| ISAzs34 | ISNCY | IS892 | Azospirillum sp. | 28 | 5.4 |
| ISAzs22 | ISAs1 | Azospirillum sp. | 28 | 5.4 | |
| ISAzs19 | IS256 | Azospirillum sp. | 28 | 5.4 | |
| ISVa3 | IS91 | Vibrio anguillarum | 28 | 5.4 | |
| ISH30 | IS4 | ISH8 | Halobacterium salinarum | 28 | 5.4 |
| ISMno12 | IS5 | IS1031 | Methylobacterium nodulans | 28 | 5.4 |
| ISMtsp19 | IS701 | Methylobacterium sp. | 28 | 5.4 | |
| ISMtsp6 | IS110 | IS1111 | Methylobacterium sp. | 28 | 5.4 |
| ISRgn2 | IS66 | Ruminococcus gnavus | 28 | 5.4 | |
| ISAzo1 | IS1182 | Azoarcus sp. | 28 | 5.4 | |
| ISMex27 | IS21 | Methylobacterium extorquens | 28 | 5.4 | |
| ISCth8 | IS110 | Clostridium thermocellum | 28 | 5.4 | |
| ISCARN9 | IS1634 | Metagenomic data from CARNOULES | 28 | 5.4 | |
| ISNha5 | IS1595 | ISNha5 | Nitrobacter hamburgensis | 28 | 5.4 |
| ISGka5 | IS66 | ISBst12 | Geobacillus kaustophilus | 28 | 5.4 |
| ISGst1 | IS66 | ISBst12 | Geobacillus stearothermophilus | 28 | 5.4 |
| ISDet2 | IS3 | IS407 | Dehalococcoides ethenogenes | 28 | 5.4 |
| ISApr4 | IS1595 | ISNwi1 | Alpha proteobacterium | 28 | 5.4 |
| ISPepr5 | IS21 | Pelobacter propionicus | 28 | 5.4 | |
| ISStag1 | IS6 | Stappia aggregata | 28 | 5.4 | |
| ISRpa3 | IS481 | Rhodopseudomonas palustris | 28 | 5.4 | |
| ISBlma4 | IS3 | IS3 | Blastopirellula marina | 28 | 5.4 |
| ISXo5 | IS1595 | IS1595 | Xanthomonas oryzae | 28 | 5.4 |
| ISPsy14 | IS21 | Pseudomonas syringae | 28 | 5.4 | |
| IS1066 | IS630 | - | Pseudomonas sp. | 28 | 5.4 |
>ISHaca1
Length = 1964
Score = 34.2 bits (17), Expect = 0.088
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 32 cgtgcgtgggctcgtcc 48
|||||||||||||||||
Sbjct: 608 cgtgcgtgggctcgtcc 624
>TnAs3
Length = 18735
Score = 32.2 bits (16), Expect = 0.35
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 82 ccatcgtcgagccgca 97
||||||||||||||||
Sbjct: 233 ccatcgtcgagccgca 248
>ISAtc3
Length = 1302
Score = 32.2 bits (16), Expect = 0.35
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 54 gatcagcgcttcgaag 69
||||||||||||||||
Sbjct: 403 gatcagcgcttcgaag 388
>ISCARN13
Length = 1302
Score = 32.2 bits (16), Expect = 0.35
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 54 gatcagcgcttcgaag 69
||||||||||||||||
Sbjct: 403 gatcagcgcttcgaag 388
>ISGob3
Length = 1597
Score = 32.2 bits (16), Expect = 0.35
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 174 cagggcccgctcggcc 189
||||||||||||||||
Sbjct: 1333 cagggcccgctcggcc 1318
>ISGob2
Length = 1575
Score = 32.2 bits (16), Expect = 0.35
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 174 cagggcccgctcggcc 189
||||||||||||||||
Sbjct: 1273 cagggcccgctcggcc 1258
>ISPre4
Length = 2575
Score = 32.2 bits (16), Expect = 0.35
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 41 gctcgtcccagcggatcagc 60
||||| ||||||||||||||
Sbjct: 1408 gctcggcccagcggatcagc 1389
>ISPpu7
Length = 2598
Score = 32.2 bits (16), Expect = 0.35
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 41 gctcgtcccagcggatcagc 60
||||| ||||||||||||||
Sbjct: 1432 gctcggcccagcggatcagc 1413
>IS1512
Length = 1314
Score = 32.2 bits (16), Expect = 0.35
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 174 cagggcccgctcggcc 189
||||||||||||||||
Sbjct: 362 cagggcccgctcggcc 347
>IS1491
Length = 2481
Score = 32.2 bits (16), Expect = 0.35
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 41 gctcgtcccagcggatcagc 60
||||| ||||||||||||||
Sbjct: 1362 gctcggcccagcggatcagc 1343
>ISMno25
Length = 1518
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 253 tcgaccgcctggatc 267
|||||||||||||||
Sbjct: 729 tcgaccgcctggatc 743
>ISGpo1
Length = 1432
Score = 30.2 bits (15), Expect = 1.4
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 122 gttggtcgttggcgatggc 140
||||| |||||||||||||
Sbjct: 835 gttggccgttggcgatggc 853
>ISPa43
Length = 19903
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 52 cggatcagcgcttcg 66
|||||||||||||||
Sbjct: 13746 cggatcagcgcttcg 13732
>ISPa22
Length = 1664
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 257 ccgcctggatcaggc 271
|||||||||||||||
Sbjct: 1277 ccgcctggatcaggc 1291
>ISAzo14
Length = 1925
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 51 gcggatcagcgcttc 65
|||||||||||||||
Sbjct: 502 gcggatcagcgcttc 488
>ISAzo12
Length = 3075
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 260 cctggatcaggctgc 274
|||||||||||||||
Sbjct: 2085 cctggatcaggctgc 2071
>ISAnsp3
Length = 2518
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 246 ggcgctgtcgaccgc 260
|||||||||||||||
Sbjct: 1879 ggcgctgtcgaccgc 1893
>IS1511
Length = 1278
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 174 cagggcccgctcggc 188
|||||||||||||||
Sbjct: 369 cagggcccgctcggc 355
>ISAeca4
Length = 1235
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 258 cgcctggatcaggc 271
||||||||||||||
Sbjct: 186 cgcctggatcaggc 199
>TnXo19
Length = 18767
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 85 tcgtcgagccgcac 98
||||||||||||||
Sbjct: 2651 tcgtcgagccgcac 2664
>ISAeme3
Length = 1384
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 136 atggcccgcaacag 149
||||||||||||||
Sbjct: 245 atggcccgcaacag 232
>ISPa55
Length = 1543
Score = 28.2 bits (14), Expect = 5.4
Identities = 20/22 (90%)
Strand = Plus / Minus
Query: 129 gttggcgatggcccgcaacagc 150
||||||||||||| |||||||
Sbjct: 1074 gttggcgatggccaccaacagc 1053
>ISTni2
Length = 3451
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 176 gggcccgctcggcc 189
||||||||||||||
Sbjct: 1284 gggcccgctcggcc 1271
>ISNha9
Length = 1322
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 228 ctccttggcgccgt 241
||||||||||||||
Sbjct: 651 ctccttggcgccgt 638
>ISSoEn2
Length = 1315
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 131 tggcgatggcccgc 144
||||||||||||||
Sbjct: 285 tggcgatggcccgc 298
>ISAzs34
Length = 1650
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 140 cccgcaacagccct 153
||||||||||||||
Sbjct: 650 cccgcaacagccct 637
>ISAzs22
Length = 1267
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 23 cgatgcgcccgtgc 36
||||||||||||||
Sbjct: 848 cgatgcgcccgtgc 835
>ISAzs19
Length = 1322
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 228 ctccttggcgccgt 241
||||||||||||||
Sbjct: 649 ctccttggcgccgt 636
>ISVa3
Length = 1508
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 62 cttcgaagccaatc 75
||||||||||||||
Sbjct: 485 cttcgaagccaatc 498
>ISH30
Length = 1654
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 54 gatcagcgcttcga 67
||||||||||||||
Sbjct: 1121 gatcagcgcttcga 1108
>ISMno12
Length = 924
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 248 cgctgtcgaccgcc 261
||||||||||||||
Sbjct: 535 cgctgtcgaccgcc 522
>ISMtsp19
Length = 1486
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 48 ccagcggatcagcg 61
||||||||||||||
Sbjct: 1265 ccagcggatcagcg 1252
>ISMtsp6
Length = 1495
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 224 cgcgctccttggcg 237
||||||||||||||
Sbjct: 711 cgcgctccttggcg 698
>ISRgn2
Length = 2745
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 74 tcagctgaccatcg 87
||||||||||||||
Sbjct: 1273 tcagctgaccatcg 1260
>ISAzo1
Length = 1545
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 225 gcgctccttggcgc 238
||||||||||||||
Sbjct: 709 gcgctccttggcgc 696
>ISMex27
Length = 2493
Score = 28.2 bits (14), Expect = 5.4
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 179 cccgctcggccatgtcgg 196
||||||||||||| ||||
Sbjct: 1793 cccgctcggccatctcgg 1776
>ISCth8
Length = 1907
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 115 agcatgagttggtc 128
||||||||||||||
Sbjct: 934 agcatgagttggtc 921
>ISCARN9
Length = 1931
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 52 cggatcagcgcttc 65
||||||||||||||
Sbjct: 507 cggatcagcgcttc 494
>ISNha5
Length = 3904
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 47 cccagcggatcagc 60
||||||||||||||
Sbjct: 1470 cccagcggatcagc 1457
>ISGka5
Length = 1610
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 149 gcccttgttcgatg 162
||||||||||||||
Sbjct: 1082 gcccttgttcgatg 1069
>ISGst1
Length = 1613
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 149 gcccttgttcgatg 162
||||||||||||||
Sbjct: 1085 gcccttgttcgatg 1072
>ISDet2
Length = 1417
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 78 ctgaccatcgtcga 91
||||||||||||||
Sbjct: 753 ctgaccatcgtcga 766
>ISApr4
Length = 3691
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 228 ctccttggcgccgt 241
||||||||||||||
Sbjct: 734 ctccttggcgccgt 721
>ISPepr5
Length = 2193
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 55 atcagcgcttcgaa 68
||||||||||||||
Sbjct: 421 atcagcgcttcgaa 434
>ISStag1
Length = 889
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 207 ggcgaagcggttcc 220
||||||||||||||
Sbjct: 404 ggcgaagcggttcc 417
>ISRpa3
Length = 1261
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 7 atgaagcggtccgg 20
||||||||||||||
Sbjct: 368 atgaagcggtccgg 381
>ISBlma4
Length = 1307
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 146 acagcccttgttcg 159
||||||||||||||
Sbjct: 142 acagcccttgttcg 129
>ISXo5
Length = 1058
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 174 cagggcccgctcgg 187
||||||||||||||
Sbjct: 1014 cagggcccgctcgg 1001
>ISPsy14
Length = 2597
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 47 cccagcggatcagc 60
||||||||||||||
Sbjct: 1424 cccagcggatcagc 1411
>IS1066
Length = 1137
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 127 tcgttggcgatggc 140
||||||||||||||
Sbjct: 408 tcgttggcgatggc 421
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_145_length_277_cov_1.45_ID_5460
(277 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| TnXo19 | Tn3 | Xanthomonas oryzae | 36 | 0.022 | |
| ISCARN49 | IS21 | Metagenomic data from CARNOULES | 32 | 0.35 | |
| ISAli10 | IS66 | Azospirillum lipoferum | 32 | 0.35 | |
| IS1419 | IS481 | - | Burkholderia glumae | 32 | 0.35 |
| ISEc61 | IS5 | IS1031 | Escherichia coli | 30 | 1.4 |
| ISH31 | ISH6 | Halobacterium sp. | 30 | 1.4 | |
| ISMfu1 | ISAzo13 | Myxococcus fulvus | 30 | 1.4 | |
| ISPsy30 | Tn3 | Pseudomonas syringae | 30 | 1.4 | |
| ISAzs17 | Tn3 | Azospirillum sp. | 30 | 1.4 | |
| ISMno8 | IS1182 | Methylobacterium nodulans | 30 | 1.4 | |
| ISAzo21 | IS66 | Azoarcus sp. | 30 | 1.4 | |
| ISKrh3 | IS481 | Kocuria rhizophila | 30 | 1.4 | |
| ISBcen23 | IS3 | IS407 | Burkholderia cenocepacia | 30 | 1.4 |
| ISRhosp3 | IS701 | Rhodococcus sp. | 30 | 1.4 | |
| ISMca7 | IS5 | IS5 | Methylococcus capsulatus | 30 | 1.4 |
| ISPpa3 | IS5 | IS903 | Paracoccus pantotrophus | 30 | 1.4 |
| ISHla10 | ISH6 | Halorubrum lacusprofundi | 30 | 1.4 | |
| TnAs3 | Tn3 | Aeromonas salmonicida | 28 | 5.4 | |
| ISHalh2 | IS5 | ISH1 | Halorubrum halophilum | 28 | 5.4 |
| TnAs2 | Tn3 | Aeromonas salmonicida | 28 | 5.4 | |
| ISHmu5 | IS200/IS605 | Halomicrobium mukohataei | 28 | 5.4 | |
| ISTni1 | ISKra4 | ISKra4 | Thioalkalivibrio nitratireducens | 28 | 5.4 |
| ISLfe2 | ISKra4 | ISKra4 | Leptospirillum ferrodiazotrophum | 28 | 5.4 |
| ISSaci1 | ISAzo13 | Streptomyces acidiscabies | 28 | 5.4 | |
| ISRjo4 | IS256 | Rhodococcus jostii | 28 | 5.4 | |
| ISPa40 | Tn3 | Pseudomonas aeruginosa | 28 | 5.4 | |
| ISAzs14 | IS630 | Azospirillum sp. | 28 | 5.4 | |
| ISNph5 | IS200/IS605 | Natronomonas pharaonis | 28 | 5.4 | |
| ISRhba5 | IS5 | IS903 | Rhodobacterales bacterium | 28 | 5.4 |
| ISUnCu15 | IS5 | IS903 | Uncultured bacterium | 28 | 5.4 |
| ISRel19 | IS66 | Rhizobium etli | 28 | 5.4 | |
| ISGau3 | IS3 | IS51 | Gemmatimonas aurantiaca | 28 | 5.4 |
| ISNha8 | IS5 | Nitrobacter hamburgensis | 28 | 5.4 | |
| ISNisp7 | IS5 | Nitrobacter sp. | 28 | 5.4 | |
| ISRosp6 | IS5 | Roseobacter sp. | 28 | 5.4 | |
| ISRjo3 | ISNCY | ISDol1 | Rhodococcus jostii | 28 | 5.4 |
| ISMno31 | IS3 | IS150 | Methylobacterium nodulans | 28 | 5.4 |
| ISMtsp16 | IS481 | Methylobacterium sp. | 28 | 5.4 | |
| ISMtsp6 | IS110 | IS1111 | Methylobacterium sp. | 28 | 5.4 |
| ISMch5 | IS3 | IS51 | Methylobacterium chloromethanicum | 28 | 5.4 |
| ISMch3 | IS3 | IS150 | Methylobacterium chloromethanicum | 28 | 5.4 |
| ISMsm12 | IS1380 | Mycobacterium smegmatis | 28 | 5.4 | |
| ISCli1 | IS1380 | Corynebacterium lipophiloflavum | 28 | 5.4 | |
| ISAtu6 | IS66 | - | Agrobacterium tumefaciens | 28 | 5.4 |
| ISBli4 | IS1380 | Brevibacterium linens | 28 | 5.4 | |
| ISCef7 | IS1380 | Corynebacterium efficiens | 28 | 5.4 | |
| ISCef6 | IS1380 | Corynebacterium efficiens | 28 | 5.4 | |
| ISAcr5 | IS1380 | Acidiphilium cryptum | 28 | 5.4 | |
| ISAcr4 | IS1380 | Acidiphilium cryptum | 28 | 5.4 | |
| ISMdi27 | IS21 | Methylobacterium dichloromethanicum | 28 | 5.4 | |
| ISAnsp4 | IS21 | Anaeromyxobacter sp. | 28 | 5.4 | |
| ISThsp15 | IS630 | Thiomonas sp. | 28 | 5.4 | |
| ISAzo34 | IS256 | Azoarcus sp. | 28 | 5.4 | |
| ISCARN70 | IS4 | IS4Sa | Metagenomic data from CARNOULES | 28 | 5.4 |
| ISAzo22 | IS110 | Azoarcus sp. | 28 | 5.4 | |
| ISAzo17 | IS21 | Azoarcus sp. | 28 | 5.4 | |
| ISAzo14 | IS1634 | Azoarcus sp. | 28 | 5.4 | |
| ISCARN22 | IS66 | Metagenomic data from CARNOULES | 28 | 5.4 | |
| ISThsp2 | IS21 | Thiomonas sp. | 28 | 5.4 | |
| ISAli20 | Tn3 | Azospirillum lipoferum | 28 | 5.4 | |
| ISNisp6 | IS66 | Nitrobacter sp. | 28 | 5.4 | |
| ISAli11 | ISL3 | Azospirillum lipoferum | 28 | 5.4 | |
| ISApr5 | IS6 | Alpha proteobacterium | 28 | 5.4 | |
| ISAli2 | IS630 | Azospirillum lipoferum | 28 | 5.4 | |
| ISAau4 | Tn3 | Arthrobacter aurescens | 28 | 5.4 | |
| ISTth8 | IS701 | Thermus thermophilus | 28 | 5.4 | |
| ISLxc4 | IS30 | Leifsonia xyli | 28 | 5.4 | |
| ISSsp2 | IS3 | IS150 | Sphingomonas sp. | 28 | 5.4 |
| ISTesp3 | IS3 | IS51 | Terrabacter sp. | 28 | 5.4 |
| ISRssp5 | IS5 | IS903 | Roseovarius sp. | 28 | 5.4 |
| ISXac2 | IS3 | IS407 | Xanthomonas axonopodis | 28 | 5.4 |
| ISNph4 | IS5 | ISH1 | Natronomonas pharaonis | 28 | 5.4 |
| ISPsy11 | IS3 | IS3 | Pseudomonas syringae | 28 | 5.4 |
| ISRso18 | IS5 | IS5 | Ralstonia solanacearum | 28 | 5.4 |
| ISPpu4 | IS3 | IS3 | Pseudomonas putida | 28 | 5.4 |
| ISMt2 | IS21 | - | Mycobacterium tuberculosis | 28 | 5.4 |
| IS4811 | IS5 | IS1031 | Streptomyces lividans | 28 | 5.4 |
| IS469 | ISL3 | - | Streptomyces coelicolor | 28 | 5.4 |
| IS220 | IS1380 | - | Mycobacterium fortuitum | 28 | 5.4 |
| IS1405 | IS5 | IS5 | Ralstonia solanacearum | 28 | 5.4 |
| IS1131 | IS66 | - | Agrobacterium tumefaciens | 28 | 5.4 |
>TnXo19
Length = 18767
Score = 36.2 bits (18), Expect = 0.022
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 39 cctcgacgccgccacccg 56
||||||||||||||||||
Sbjct: 14758 cctcgacgccgccacccg 14775
>ISCARN49
Length = 2630
Score = 32.2 bits (16), Expect = 0.35
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 143 gctcgcgctggctgcg 158
||||||||||||||||
Sbjct: 1426 gctcgcgctggctgcg 1441
>ISAli10
Length = 2584
Score = 32.2 bits (16), Expect = 0.35
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 203 cccgccatgccgccgtggcc 222
||||||||||| ||||||||
Sbjct: 2211 cccgccatgcccccgtggcc 2230
>IS1419
Length = 1215
Score = 32.2 bits (16), Expect = 0.35
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 150 ctggctgcgtcacgcg 165
||||||||||||||||
Sbjct: 445 ctggctgcgtcacgcg 460
>ISEc61
Length = 954
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 89 gcgaggcttcgccca 103
|||||||||||||||
Sbjct: 422 gcgaggcttcgccca 436
>ISH31
Length = 1445
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 38 gcctcgacgccgcca 52
|||||||||||||||
Sbjct: 219 gcctcgacgccgcca 233
>ISMfu1
Length = 1293
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 70 ctgaccgaaaccctg 84
|||||||||||||||
Sbjct: 331 ctgaccgaaaccctg 345
>ISPsy30
Length = 5167
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 182 gcgaccgcgccgccg 196
|||||||||||||||
Sbjct: 1939 gcgaccgcgccgccg 1925
>ISAzs17
Length = 7252
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 229 ctcggcgatgccggc 243
|||||||||||||||
Sbjct: 555 ctcggcgatgccggc 541
>ISMno8
Length = 1466
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 80 ccctgcgcggcgagg 94
|||||||||||||||
Sbjct: 799 ccctgcgcggcgagg 813
>ISAzo21
Length = 2423
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 62 acctcgaactgaccg 76
|||||||||||||||
Sbjct: 1206 acctcgaactgaccg 1192
>ISKrh3
Length = 1113
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 64 ctcgaactgaccgaa 78
|||||||||||||||
Sbjct: 390 ctcgaactgaccgaa 404
>ISBcen23
Length = 1195
Score = 30.2 bits (15), Expect = 1.4
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 147 gcgctggctgcgtcacgcg 165
||||||||||||| |||||
Sbjct: 892 gcgctggctgcgtgacgcg 910
>ISRhosp3
Length = 1349
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 49 gccacccgccgcaac 63
|||||||||||||||
Sbjct: 701 gccacccgccgcaac 715
>ISMca7
Length = 1172
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 229 ctcggcgatgccggc 243
|||||||||||||||
Sbjct: 721 ctcggcgatgccggc 735
>ISPpa3
Length = 1054
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 243 cagcggccccggcgc 257
|||||||||||||||
Sbjct: 415 cagcggccccggcgc 401
>ISHla10
Length = 1444
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 38 gcctcgacgccgcca 52
|||||||||||||||
Sbjct: 218 gcctcgacgccgcca 232
>TnAs3
Length = 18735
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 65 tcgaactgaccgaa 78
||||||||||||||
Sbjct: 4384 tcgaactgaccgaa 4397
>ISHalh2
Length = 929
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 228 gctcggcgatgccg 241
||||||||||||||
Sbjct: 798 gctcggcgatgccg 811
>TnAs2
Length = 8650
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 210 tgccgccgtggccg 223
||||||||||||||
Sbjct: 1829 tgccgccgtggccg 1842
>ISHmu5
Length = 1847
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 27 cgaatacatccgcc 40
||||||||||||||
Sbjct: 1483 cgaatacatccgcc 1496
>ISTni1
Length = 2377
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 98 cgcccacgctgctg 111
||||||||||||||
Sbjct: 1110 cgcccacgctgctg 1123
>ISLfe2
Length = 1803
Score = 28.2 bits (14), Expect = 5.4
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 36 ccgcctcgacgccgccac 53
||||||||||| ||||||
Sbjct: 1573 ccgcctcgacgacgccac 1556
>ISSaci1
Length = 1747
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 245 gcggccccggcgcc 258
||||||||||||||
Sbjct: 1453 gcggccccggcgcc 1466
>ISRjo4
Length = 1458
Score = 28.2 bits (14), Expect = 5.4
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 192 cgccgtcaccgcccgcca 209
||||||||||| ||||||
Sbjct: 853 cgccgtcaccgaccgcca 836
>ISPa40
Length = 6592
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 238 gccggcagcggccc 251
||||||||||||||
Sbjct: 3511 gccggcagcggccc 3498
>ISAzs14
Length = 1176
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 207 ccatgccgccgtgg 220
||||||||||||||
Sbjct: 883 ccatgccgccgtgg 896
>ISNph5
Length = 1847
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 27 cgaatacatccgcc 40
||||||||||||||
Sbjct: 1483 cgaatacatccgcc 1496
>ISRhba5
Length = 1053
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 75 cgaaaccctgcgcg 88
||||||||||||||
Sbjct: 774 cgaaaccctgcgcg 787
>ISUnCu15
Length = 1053
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 75 cgaaaccctgcgcg 88
||||||||||||||
Sbjct: 774 cgaaaccctgcgcg 787
>ISRel19
Length = 2798
Score = 28.2 bits (14), Expect = 5.4
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 61 aacctcgaactgaccgaa 78
||||||||||||| ||||
Sbjct: 2506 aacctcgaactgatcgaa 2523
>ISGau3
Length = 1253
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 173 atccgctgcgcgac 186
||||||||||||||
Sbjct: 441 atccgctgcgcgac 428
>ISNha8
Length = 1288
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 44 acgccgccacccgc 57
||||||||||||||
Sbjct: 809 acgccgccacccgc 796
>ISNisp7
Length = 1276
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 44 acgccgccacccgc 57
||||||||||||||
Sbjct: 808 acgccgccacccgc 795
>ISRosp6
Length = 1357
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 111 gtcctgcctcgaca 124
||||||||||||||
Sbjct: 16 gtcctgcctcgaca 29
>ISRjo3
Length = 1638
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 176 cgctgcgcgaccgc 189
||||||||||||||
Sbjct: 722 cgctgcgcgaccgc 709
>ISMno31
Length = 1510
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 81 cctgcgcggcgagg 94
||||||||||||||
Sbjct: 201 cctgcgcggcgagg 214
>ISMtsp16
Length = 1023
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 195 cgtcaccgcccgcc 208
||||||||||||||
Sbjct: 209 cgtcaccgcccgcc 196
>ISMtsp6
Length = 1495
Score = 28.2 bits (14), Expect = 5.4
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 240 cggcagcggccccggcgc 257
|||||||||||| |||||
Sbjct: 522 cggcagcggcccgggcgc 505
>ISMch5
Length = 1240
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 180 gcgcgaccgcgccg 193
||||||||||||||
Sbjct: 629 gcgcgaccgcgccg 642
>ISMch3
Length = 1510
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 81 cctgcgcggcgagg 94
||||||||||||||
Sbjct: 201 cctgcgcggcgagg 214
>ISMsm12
Length = 3256
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 226 ttgctcggcgatgc 239
||||||||||||||
Sbjct: 1159 ttgctcggcgatgc 1146
>ISCli1
Length = 1687
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 208 catgccgccgtggc 221
||||||||||||||
Sbjct: 372 catgccgccgtggc 359
>ISAtu6
Length = 2798
Score = 28.2 bits (14), Expect = 5.4
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 61 aacctcgaactgaccgaa 78
||||||||||||| ||||
Sbjct: 2506 aacctcgaactgatcgaa 2523
>ISBli4
Length = 1713
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 208 catgccgccgtggc 221
||||||||||||||
Sbjct: 384 catgccgccgtggc 371
>ISCef7
Length = 1687
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 208 catgccgccgtggc 221
||||||||||||||
Sbjct: 372 catgccgccgtggc 359
>ISCef6
Length = 1684
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 208 catgccgccgtggc 221
||||||||||||||
Sbjct: 372 catgccgccgtggc 359
>ISAcr5
Length = 1618
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 134 ccagcatgggctcg 147
||||||||||||||
Sbjct: 295 ccagcatgggctcg 308
>ISAcr4
Length = 1618
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 134 ccagcatgggctcg 147
||||||||||||||
Sbjct: 294 ccagcatgggctcg 307
>ISMdi27
Length = 2476
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 141 gggctcgcgctggc 154
||||||||||||||
Sbjct: 1504 gggctcgcgctggc 1491
>ISAnsp4
Length = 2195
Score = 28.2 bits (14), Expect = 5.4
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 222 cgagttgctcggcgatgc 239
|||| |||||||||||||
Sbjct: 1433 cgagctgctcggcgatgc 1416
>ISThsp15
Length = 1482
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 27 cgaatacatccgcc 40
||||||||||||||
Sbjct: 697 cgaatacatccgcc 710
>ISAzo34
Length = 1439
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 81 cctgcgcggcgagg 94
||||||||||||||
Sbjct: 659 cctgcgcggcgagg 672
>ISCARN70
Length = 1312
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 229 ctcggcgatgccgg 242
||||||||||||||
Sbjct: 489 ctcggcgatgccgg 476
>ISAzo22
Length = 1763
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 234 cgatgccggcagcg 247
||||||||||||||
Sbjct: 370 cgatgccggcagcg 357
>ISAzo17
Length = 2095
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 40 ctcgacgccgccac 53
||||||||||||||
Sbjct: 857 ctcgacgccgccac 870
>ISAzo14
Length = 1925
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 82 ctgcgcggcgaggc 95
||||||||||||||
Sbjct: 1498 ctgcgcggcgaggc 1485
>ISCARN22
Length = 2674
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 98 cgcccacgctgctg 111
||||||||||||||
Sbjct: 472 cgcccacgctgctg 459
>ISThsp2
Length = 2644
Score = 28.2 bits (14), Expect = 5.4
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 215 ccgtggccgagttgctcg 232
||||||||||| ||||||
Sbjct: 990 ccgtggccgagatgctcg 1007
>ISAli20
Length = 3828
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 182 gcgaccgcgccgcc 195
||||||||||||||
Sbjct: 2458 gcgaccgcgccgcc 2471
>ISNisp6
Length = 2489
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 242 gcagcggccccggc 255
||||||||||||||
Sbjct: 2032 gcagcggccccggc 2019
>ISAli11
Length = 1739
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 200 ccgcccgccatgcc 213
||||||||||||||
Sbjct: 962 ccgcccgccatgcc 975
>ISApr5
Length = 806
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 79 accctgcgcggcga 92
||||||||||||||
Sbjct: 698 accctgcgcggcga 711
>ISAli2
Length = 1171
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 45 cgccgccacccgcc 58
||||||||||||||
Sbjct: 186 cgccgccacccgcc 173
>ISAau4
Length = 3898
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 16 gagcacgagtccga 29
||||||||||||||
Sbjct: 2939 gagcacgagtccga 2926
>ISTth8
Length = 1016
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 92 aggcttcgcccacg 105
||||||||||||||
Sbjct: 155 aggcttcgcccacg 168
>ISLxc4
Length = 1311
Score = 28.2 bits (14), Expect = 5.4
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 123 cacctgcgtcaccagcat 140
||||||||||| ||||||
Sbjct: 579 cacctgcgtcagcagcat 596
>ISSsp2
Length = 1511
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 81 cctgcgcggcgagg 94
||||||||||||||
Sbjct: 202 cctgcgcggcgagg 215
>ISTesp3
Length = 1373
Score = 28.2 bits (14), Expect = 5.4
Identities = 20/22 (90%)
Strand = Plus / Minus
Query: 220 gccgagttgctcggcgatgccg 241
|||||| | |||||||||||||
Sbjct: 177 gccgaggtcctcggcgatgccg 156
>ISRssp5
Length = 1047
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 182 gcgaccgcgccgcc 195
||||||||||||||
Sbjct: 201 gcgaccgcgccgcc 188
>ISXac2
Length = 1195
Score = 28.2 bits (14), Expect = 5.4
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 4 ggcattcgggtcgagcac 21
||||| ||||||||||||
Sbjct: 933 ggcatccgggtcgagcac 950
>ISNph4
Length = 929
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 228 gctcggcgatgccg 241
||||||||||||||
Sbjct: 798 gctcggcgatgccg 811
>ISPsy11
Length = 1313
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 145 tcgcgctggctgcg 158
||||||||||||||
Sbjct: 85 tcgcgctggctgcg 72
>ISRso18
Length = 1188
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 230 tcggcgatgccggc 243
||||||||||||||
Sbjct: 482 tcggcgatgccggc 469
>ISPpu4
Length = 1663
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 215 ccgtggccgagttg 228
||||||||||||||
Sbjct: 143 ccgtggccgagttg 156
>ISMt2
Length = 2645
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 42 cgacgccgccaccc 55
||||||||||||||
Sbjct: 515 cgacgccgccaccc 502
>IS4811
Length = 5396
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 216 cgtggccgagttgc 229
||||||||||||||
Sbjct: 587 cgtggccgagttgc 600
>IS469
Length = 1647
Score = 28.2 bits (14), Expect = 5.4
Identities = 20/22 (90%)
Strand = Plus / Plus
Query: 183 cgaccgcgccgccgtcaccgcc 204
|||||||||||| |||| ||||
Sbjct: 1454 cgaccgcgccgcagtcaacgcc 1475
>IS220
Length = 3257
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 226 ttgctcggcgatgc 239
||||||||||||||
Sbjct: 1159 ttgctcggcgatgc 1146
>IS1405
Length = 1174
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 230 tcggcgatgccggc 243
||||||||||||||
Sbjct: 707 tcggcgatgccggc 720
>IS1131
Length = 2773
Score = 28.2 bits (14), Expect = 5.4
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 61 aacctcgaactgaccgaa 78
||||||||||||| ||||
Sbjct: 2484 aacctcgaactgatcgaa 2501
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_146_length_277_cov_1.09_ID_5462
(277 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISFsp15 | IS1380 | Frankia sp. | 36 | 0.022 | |
| ISFsp14 | IS1380 | Frankia sp. | 36 | 0.022 | |
| ISAzs28 | IS5 | IS1031 | Azospirillum sp. | 30 | 1.4 |
| ISAzs22 | ISAs1 | Azospirillum sp. | 30 | 1.4 | |
| ISMno9 | IS1182 | Methylobacterium nodulans | 30 | 1.4 | |
| ISMex16 | IS3 | IS150 | Methylobacterium extorquens | 30 | 1.4 |
| ISAzo12 | IS21 | Azoarcus sp. | 30 | 1.4 | |
| ISCARN28 | IS110 | IS1111 | Metagenomic data from CARNOULES | 30 | 1.4 |
| ISGdi3 | IS5 | IS1031 | Gluconacetobacter diazotrophicus | 30 | 1.4 |
| ISAcma2 | ISAs1 | Acaryochloris marina | 30 | 1.4 | |
| ISCmi3 | IS30 | Clavibacter michiganensis | 30 | 1.4 | |
| IS1373 | IS5 | ISL2 | Streptomyces lividans | 30 | 1.4 |
| ISAve3 | IS3 | IS2 | Aeromonas veronii | 28 | 5.4 |
| ISAeme6 | IS3 | IS407 | Aeromonas media | 28 | 5.4 |
| ISAeme17 | IS21 | Aeromonas media | 28 | 5.4 | |
| ISPa39 | IS3 | IS407 | Pseudomonas aeruginosa | 28 | 5.4 |
| ISAzs36 | IS481 | Azospirillum sp. | 28 | 5.4 | |
| ISRm33 | IS5 | IS903 | Sinorhizobium meliloti | 28 | 5.4 |
| ISHph1 | IS5 | IS903 | Hoeflea phototrophica | 28 | 5.4 |
| ISBps3 | IS5 | IS903 | Burkholderia pseudomallei | 28 | 5.4 |
| ISRel24 | IS66 | Rhizobium etli | 28 | 5.4 | |
| ISVsp3 | IS66 | Verrucomicrobium spinosum | 28 | 5.4 | |
| ISMaq3 | IS1380 | Marinobacter aquaeolei | 28 | 5.4 | |
| ISDde1 | IS5 | IS5 | Desulfovibrio desulfuricans | 28 | 5.4 |
| ISAnsp12 | IS66 | Anaeromyxobacter sp. | 28 | 5.4 | |
| ISSav5 | IS481 | Streptomyces avermitilis | 28 | 5.4 | |
| ISStma1 | IS481 | Stenotrophomonas maltophilia | 28 | 5.4 | |
| ISAisp4 | IS110 | Acidovorax sp. | 28 | 5.4 | |
| ISTth7 | IS5 | Thermus thermophilus | 28 | 5.4 | |
| ISTesp3 | IS3 | IS51 | Terrabacter sp. | 28 | 5.4 |
| ISBmu6 | IS3 | IS150 | Burkholderia multivorans | 28 | 5.4 |
| ISCro2 | IS4 | IS10 | Citrobacter rodentium | 28 | 5.4 |
| ISGpr2 | IS3 | IS51 | Gamma proteobacterium | 28 | 5.4 |
| ISSco3 | IS5 | IS1031 | Streptomyces coelicolor | 28 | 5.4 |
| IS468A | IS5 | IS1031 | Streptomyces coelicolor | 28 | 5.4 |
| IS3000 | Tn3 | - | Escherichia coli | 28 | 5.4 |
>ISFsp15
Length = 1695
Score = 36.2 bits (18), Expect = 0.022
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 25 cgaccgagtaggccagcc 42
||||||||||||||||||
Sbjct: 887 cgaccgagtaggccagcc 870
>ISFsp14
Length = 1696
Score = 36.2 bits (18), Expect = 0.022
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 25 cgaccgagtaggccagcc 42
||||||||||||||||||
Sbjct: 887 cgaccgagtaggccagcc 870
>ISAzs28
Length = 1055
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 78 cgcgccgtcacgatc 92
|||||||||||||||
Sbjct: 710 cgcgccgtcacgatc 696
>ISAzs22
Length = 1267
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 158 gcgcgccatctgcca 172
|||||||||||||||
Sbjct: 624 gcgcgccatctgcca 638
>ISMno9
Length = 1548
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 157 cgcgcgccatctgcc 171
|||||||||||||||
Sbjct: 1250 cgcgcgccatctgcc 1236
>ISMex16
Length = 1511
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 111 gcatcacccgcgcct 125
|||||||||||||||
Sbjct: 1060 gcatcacccgcgcct 1046
>ISAzo12
Length = 3075
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 153 gccgcgcgcgccatc 167
|||||||||||||||
Sbjct: 2250 gccgcgcgcgccatc 2264
>ISCARN28
Length = 1419
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 140 ctgcgagatcattgc 154
|||||||||||||||
Sbjct: 364 ctgcgagatcattgc 378
>ISGdi3
Length = 912
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 78 cgcgccgtcacgatc 92
|||||||||||||||
Sbjct: 584 cgcgccgtcacgatc 570
>ISAcma2
Length = 1263
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 251 ggccaacacataatc 265
|||||||||||||||
Sbjct: 677 ggccaacacataatc 663
>ISCmi3
Length = 1459
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 5 cgcaccggccgcacc 19
|||||||||||||||
Sbjct: 843 cgcaccggccgcacc 857
>IS1373
Length = 817
Score = 30.2 bits (15), Expect = 1.4
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 5 cgcaccggccgcaccattg 23
|||||| ||||||||||||
Sbjct: 35 cgcaccagccgcaccattg 17
>ISAve3
Length = 1333
Score = 28.2 bits (14), Expect = 5.4
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 8 accggccgcaccattgac 25
|||||| |||||||||||
Sbjct: 735 accggctgcaccattgac 752
>ISAeme6
Length = 1198
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 143 cgagatcattgccg 156
||||||||||||||
Sbjct: 302 cgagatcattgccg 315
>ISAeme17
Length = 1941
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 86 cacgatcttggcct 99
||||||||||||||
Sbjct: 69 cacgatcttggcct 56
>ISPa39
Length = 1254
Score = 28.2 bits (14), Expect = 5.4
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 100 ggtagaacgacgcatcac 117
||||||||||||| ||||
Sbjct: 180 ggtagaacgacgcgtcac 163
>ISAzs36
Length = 2622
Score = 28.2 bits (14), Expect = 5.4
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 140 ctgcgagatcattgccgc 157
|||||||||||| |||||
Sbjct: 239 ctgcgagatcatcgccgc 256
>ISRm33
Length = 1116
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 142 gcgagatcattgcc 155
||||||||||||||
Sbjct: 591 gcgagatcattgcc 604
>ISHph1
Length = 1130
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 142 gcgagatcattgcc 155
||||||||||||||
Sbjct: 595 gcgagatcattgcc 608
>ISBps3
Length = 1133
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 150 attgccgcgcgcgc 163
||||||||||||||
Sbjct: 762 attgccgcgcgcgc 775
>ISRel24
Length = 2837
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 169 gccagccaccggcc 182
||||||||||||||
Sbjct: 1400 gccagccaccggcc 1413
>ISVsp3
Length = 2446
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 220 ccgaagccgccttg 233
||||||||||||||
Sbjct: 1997 ccgaagccgccttg 2010
>ISMaq3
Length = 1560
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 172 agccaccggccaca 185
||||||||||||||
Sbjct: 331 agccaccggccaca 318
>ISDde1
Length = 1479
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 83 cgtcacgatcttgg 96
||||||||||||||
Sbjct: 623 cgtcacgatcttgg 610
>ISAnsp12
Length = 2926
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 158 gcgcgccatctgcc 171
||||||||||||||
Sbjct: 2738 gcgcgccatctgcc 2751
>ISSav5
Length = 1953
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 161 cgccatctgccagc 174
||||||||||||||
Sbjct: 574 cgccatctgccagc 561
>ISStma1
Length = 1023
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 37 ccagccccggtgcc 50
||||||||||||||
Sbjct: 255 ccagccccggtgcc 242
>ISAisp4
Length = 1614
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 89 gatcttggcctggt 102
||||||||||||||
Sbjct: 363 gatcttggcctggt 350
>ISTth7
Length = 1029
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 32 gtaggccagccccg 45
||||||||||||||
Sbjct: 484 gtaggccagccccg 471
>ISTesp3
Length = 1373
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 110 cgcatcacccgcgc 123
||||||||||||||
Sbjct: 718 cgcatcacccgcgc 705
>ISBmu6
Length = 1445
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 215 gcccaccgaagccg 228
||||||||||||||
Sbjct: 429 gcccaccgaagccg 442
>ISCro2
Length = 1281
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 159 cgcgccatctgcca 172
||||||||||||||
Sbjct: 681 cgcgccatctgcca 668
>ISGpr2
Length = 1229
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 69 gcgtagaaacgcgc 82
||||||||||||||
Sbjct: 959 gcgtagaaacgcgc 946
>ISSco3
Length = 1101
Score = 28.2 bits (14), Expect = 5.4
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 193 acagcttgagcatgggca 210
||||| ||||||||||||
Sbjct: 221 acagcgtgagcatgggca 204
>IS468A
Length = 1097
Score = 28.2 bits (14), Expect = 5.4
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 193 acagcttgagcatgggca 210
||||| ||||||||||||
Sbjct: 219 acagcgtgagcatgggca 202
>IS3000
Length = 3235
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 95 ggcctggtagaacg 108
||||||||||||||
Sbjct: 413 ggcctggtagaacg 400
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_147_length_275_cov_0.737374_ID_5464
(275 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| TnAs1 | Tn3 | Aeromonas salmonicida | 36 | 0.022 | |
| ISAzs21 | IS66 | Azospirillum sp. | 34 | 0.087 | |
| ISAli17 | IS5 | IS903 | Azospirillum lipoferum | 32 | 0.35 |
| ISAve1 | IS110 | IS1111 | Aeromonas veronii | 30 | 1.4 |
| ISAcma36 | IS1 | Acaryochloris marina | 30 | 1.4 | |
| ISCARN18 | IS110 | IS1111 | Metagenomic data from CARNOULES | 30 | 1.4 |
| ISRme12 | IS3 | IS150 | Ralstonia metallidurans | 30 | 1.4 |
| ISBcen18 | IS256 | Burkholderia cenocepacia | 30 | 1.4 | |
| TnXo19 | Tn3 | Xanthomonas oryzae | 28 | 5.4 | |
| ISHti7 | IS5 | Halorhabdus tiamatea | 28 | 5.4 | |
| ISMyma10 | IS3 | IS51 | Mycobacterium marinum | 28 | 5.4 |
| ISNagr10 | IS1595 | ISH4 | Natronobacterium gregoryi | 28 | 5.4 |
| ISUnCu18 | ISKra4 | ISAzba1 | Uncultured bacterium | 28 | 5.4 |
| ISSusp3 | ISKra4 | ISAzba1 | Sulfitobacter sp. | 28 | 5.4 |
| ISMme1 | ISAzo13 | Mesorhizobium metallidurans | 28 | 5.4 | |
| ISCde3 | ISLre2 | Candidatus Desulforudis audaxviator | 28 | 5.4 | |
| ISPa43 | Tn3 | Pseudomonas aeruginosa | 28 | 5.4 | |
| ISMesi1 | IS3 | IS150 | Meiothermus silvanus | 28 | 5.4 |
| ISAcsp1 | Tn3 | Acinetobacter sp. | 28 | 5.4 | |
| ISBuce2 | IS5 | Burkholderia cepacia | 28 | 5.4 | |
| ISMtsp8 | IS21 | Methylobacterium sp. | 28 | 5.4 | |
| ISMdi2 | ISL3 | Methylobacterium dichloromethanicum | 28 | 5.4 | |
| ISAnsp4 | IS21 | Anaeromyxobacter sp. | 28 | 5.4 | |
| ISAli19 | IS200/IS605 | IS1341 | Azospirillum lipoferum | 28 | 5.4 |
| ISArch19 | IS66 | ISBst12 | uncultured archaeon | 28 | 5.4 |
| ISSpn5 | IS1380 | Streptococcus pneumoniae | 28 | 5.4 | |
| ISPpu19 | IS66 | Pseudomonas putida | 28 | 5.4 | |
| ISButh1 | IS3 | IS2 | Burkholderia thailandensis | 28 | 5.4 |
| ISMav3 | IS481 | Mycobacterium avium 104 | 28 | 5.4 | |
| ISAzo4 | IS21 | Azoarcus sp. | 28 | 5.4 | |
| ISBmu1 | IS21 | Burkholderia multivorans | 28 | 5.4 | |
| ISTth1 | IS3 | IS150 | Thermus thermophilus | 28 | 5.4 |
| IS1629 | ISAs1 | - | Streptomyces sp. | 28 | 5.4 |
>TnAs1
Length = 6694
Score = 36.2 bits (18), Expect = 0.022
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 113 gcgatcaacgacaaggtg 130
||||||||||||||||||
Sbjct: 4658 gcgatcaacgacaaggtg 4675
>ISAzs21
Length = 2598
Score = 34.2 bits (17), Expect = 0.087
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 249 ggggcagcctcggcctg 265
|||||||||||||||||
Sbjct: 2173 ggggcagcctcggcctg 2157
>ISAli17
Length = 1109
Score = 32.2 bits (16), Expect = 0.35
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 19 cggcggcccgccgcgc 34
||||||||||||||||
Sbjct: 532 cggcggcccgccgcgc 547
>ISAve1
Length = 1393
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 219 cccgcatcgtctggg 233
|||||||||||||||
Sbjct: 1050 cccgcatcgtctggg 1064
>ISAcma36
Length = 1069
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 129 tggcctcaaggatgc 143
|||||||||||||||
Sbjct: 499 tggcctcaaggatgc 513
>ISCARN18
Length = 1561
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 232 gggcaaccaggccgc 246
|||||||||||||||
Sbjct: 1459 gggcaaccaggccgc 1473
>ISRme12
Length = 1454
Score = 30.2 bits (15), Expect = 1.4
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 56 cccttatgatggccgtaga 74
|||||||||||| ||||||
Sbjct: 736 cccttatgatggtcgtaga 718
>ISBcen18
Length = 1372
Score = 30.2 bits (15), Expect = 1.4
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 69 cgtagaatggcacgacgtg 87
||||||| |||||||||||
Sbjct: 1085 cgtagaacggcacgacgtg 1067
>TnXo19
Length = 18767
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 16 gctcggcggcccgc 29
||||||||||||||
Sbjct: 1802 gctcggcggcccgc 1789
>ISHti7
Length = 1063
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 168 cgctgttcgaacac 181
||||||||||||||
Sbjct: 129 cgctgttcgaacac 142
>ISMyma10
Length = 1352
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 24 gcccgccgcgcacc 37
||||||||||||||
Sbjct: 659 gcccgccgcgcacc 646
>ISNagr10
Length = 1000
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 110 accgcgatcaacga 123
||||||||||||||
Sbjct: 603 accgcgatcaacga 590
>ISUnCu18
Length = 1434
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 198 atgtgcttgacccg 211
||||||||||||||
Sbjct: 958 atgtgcttgacccg 945
>ISSusp3
Length = 1434
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 198 atgtgcttgacccg 211
||||||||||||||
Sbjct: 958 atgtgcttgacccg 945
>ISMme1
Length = 1324
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 182 atggccgatgcggt 195
||||||||||||||
Sbjct: 487 atggccgatgcggt 474
>ISCde3
Length = 1572
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 197 tatgtgcttgaccc 210
||||||||||||||
Sbjct: 1485 tatgtgcttgaccc 1472
>ISPa43
Length = 19903
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 47 tcgcgcataccctt 60
||||||||||||||
Sbjct: 9429 tcgcgcataccctt 9416
>ISMesi1
Length = 1234
Score = 28.2 bits (14), Expect = 5.4
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 246 cctggggcagcctcggcc 263
|||||| |||||||||||
Sbjct: 829 cctgggacagcctcggcc 812
>ISAcsp1
Length = 3736
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 113 gcgatcaacgacaa 126
||||||||||||||
Sbjct: 1700 gcgatcaacgacaa 1713
>ISBuce2
Length = 1345
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 221 cgcatcgtctgggg 234
||||||||||||||
Sbjct: 99 cgcatcgtctgggg 86
>ISMtsp8
Length = 2371
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 219 cccgcatcgtctgg 232
||||||||||||||
Sbjct: 566 cccgcatcgtctgg 579
>ISMdi2
Length = 1689
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 26 ccgccgcgcaccgg 39
||||||||||||||
Sbjct: 1046 ccgccgcgcaccgg 1059
>ISAnsp4
Length = 2195
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 22 cggcccgccgcgca 35
||||||||||||||
Sbjct: 251 cggcccgccgcgca 238
>ISAli19
Length = 1336
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 106 ctcaaccgcgatca 119
||||||||||||||
Sbjct: 926 ctcaaccgcgatca 913
>ISArch19
Length = 1540
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 231 ggggcaaccaggcc 244
||||||||||||||
Sbjct: 409 ggggcaaccaggcc 422
>ISSpn5
Length = 1703
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 170 ctgttcgaacacat 183
||||||||||||||
Sbjct: 1366 ctgttcgaacacat 1353
>ISPpu19
Length = 2377
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 107 tcaaccgcgatcaa 120
||||||||||||||
Sbjct: 918 tcaaccgcgatcaa 931
>ISButh1
Length = 1330
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 164 gaagcgctgttcga 177
||||||||||||||
Sbjct: 966 gaagcgctgttcga 953
>ISMav3
Length = 1091
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 15 cgctcggcggcccg 28
||||||||||||||
Sbjct: 204 cgctcggcggcccg 191
>ISAzo4
Length = 2757
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 19 cggcggcccgccgc 32
||||||||||||||
Sbjct: 1373 cggcggcccgccgc 1360
>ISBmu1
Length = 2581
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 117 tcaacgacaaggtg 130
||||||||||||||
Sbjct: 1447 tcaacgacaaggtg 1460
>ISTth1
Length = 1261
Score = 28.2 bits (14), Expect = 5.4
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 246 cctggggcagcctcggcc 263
|||||| |||||||||||
Sbjct: 856 cctgggacagcctcggcc 839
>IS1629
Length = 1462
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 233 ggcaaccaggccgc 246
||||||||||||||
Sbjct: 238 ggcaaccaggccgc 225
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_148_length_275_cov_0.732323_ID_5466
(275 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISMex12 | IS110 | Methylobacterium extorquens | 34 | 0.087 | |
| IS292 | IS66 | - | Agrobacterium sp | 32 | 0.35 |
| TnAs3 | Tn3 | Aeromonas salmonicida | 30 | 1.4 | |
| ISBrsp5 | IS66 | ISBst12 | Bradyrhizobium sp. | 30 | 1.4 |
| ISSpo4 | IS5 | IS903 | Silicibacter pomeroyi | 30 | 1.4 |
| IS654 | IS256 | - | Bacillus halodurans | 30 | 1.4 |
| ISAeme5 | IS66 | Aeromonas media | 28 | 5.4 | |
| ISPa43 | Tn3 | Pseudomonas aeruginosa | 28 | 5.4 | |
| ISMdi14 | IS110 | IS1111 | Methylobacterium dichloromethanicum | 28 | 5.4 |
| ISMex22 | Tn3 | Methylobacterium extorquens | 28 | 5.4 | |
| ISThsp16 | IS1182 | Thiomonas sp. | 28 | 5.4 | |
| ISCARN31 | IS630 | Metagenomic data from CARNOULES | 28 | 5.4 | |
| ISAli3 | IS630 | Azospirillum lipoferum | 28 | 5.4 | |
| ISRhru2 | IS66 | ISBst12 | Rhodospirillum rubrum | 28 | 5.4 |
| ISGur6 | IS3 | IS3 | Geobacter uraniireducens | 28 | 5.4 |
| ISOcsp1 | IS21 | Ochrobactrum sp. | 28 | 5.4 | |
| ISBcen19 | IS66 | Burkholderia cenocepacia | 28 | 5.4 | |
| ISH7B | ISNCY | Halobacterium sp. | 28 | 5.4 | |
| ISH7A | ISNCY | Halobacterium sp. | 28 | 5.4 | |
| IS911 | IS3 | IS3 | Shigella dysenteriae | 28 | 5.4 |
| IS1512 | IS256 | - | Mycobacterium gordonae | 28 | 5.4 |
>ISMex12
Length = 1418
Score = 34.2 bits (17), Expect = 0.087
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 191 ttggcggccttgcgcccgacg 211
|||||| ||||||||||||||
Sbjct: 727 ttggcgaccttgcgcccgacg 707
>IS292
Length = 2496
Score = 32.2 bits (16), Expect = 0.35
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 227 cgactgtcttcgaagc 242
||||||||||||||||
Sbjct: 692 cgactgtcttcgaagc 707
>TnAs3
Length = 18735
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 152 cggtgcgggtcagcg 166
|||||||||||||||
Sbjct: 5990 cggtgcgggtcagcg 5976
>ISBrsp5
Length = 1541
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 170 aggtcaatctggcgc 184
|||||||||||||||
Sbjct: 1066 aggtcaatctggcgc 1080
>ISSpo4
Length = 1092
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 177 tctggcgctcggggt 191
|||||||||||||||
Sbjct: 958 tctggcgctcggggt 944
>IS654
Length = 1384
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 101 acatggtgatgatgg 115
|||||||||||||||
Sbjct: 397 acatggtgatgatgg 383
>ISAeme5
Length = 2438
Score = 28.2 bits (14), Expect = 5.4
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 196 ggccttgcgcccgacggc 213
|||||||||||| |||||
Sbjct: 2193 ggccttgcgccccacggc 2176
>ISPa43
Length = 19903
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 193 ggcggccttgcgcc 206
||||||||||||||
Sbjct: 19736 ggcggccttgcgcc 19749
>ISMdi14
Length = 1316
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 193 ggcggccttgcgcc 206
||||||||||||||
Sbjct: 1181 ggcggccttgcgcc 1194
>ISMex22
Length = 3864
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 149 tgacggtgcgggtc 162
||||||||||||||
Sbjct: 3346 tgacggtgcgggtc 3333
>ISThsp16
Length = 1602
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 11 ggcgatctggcccg 24
||||||||||||||
Sbjct: 204 ggcgatctggcccg 217
>ISCARN31
Length = 1099
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 23 cgcgttgcagaggc 36
||||||||||||||
Sbjct: 482 cgcgttgcagaggc 469
>ISAli3
Length = 1167
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 12 gcgatctggcccgc 25
||||||||||||||
Sbjct: 430 gcgatctggcccgc 443
>ISRhru2
Length = 1443
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 14 gatctggcccgcgt 27
||||||||||||||
Sbjct: 914 gatctggcccgcgt 927
>ISGur6
Length = 1667
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 194 gcggccttgcgccc 207
||||||||||||||
Sbjct: 733 gcggccttgcgccc 720
>ISOcsp1
Length = 1955
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 156 gcgggtcagcgcca 169
||||||||||||||
Sbjct: 501 gcgggtcagcgcca 488
>ISBcen19
Length = 2450
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 154 gtgcgggtcagcgc 167
||||||||||||||
Sbjct: 2243 gtgcgggtcagcgc 2256
>ISH7B
Length = 2924
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 104 tggtgatgatggac 117
||||||||||||||
Sbjct: 1982 tggtgatgatggac 1995
>ISH7A
Length = 3302
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 104 tggtgatgatggac 117
||||||||||||||
Sbjct: 2361 tggtgatgatggac 2374
>IS911
Length = 1250
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 129 cttgctccggccga 142
||||||||||||||
Sbjct: 550 cttgctccggccga 537
>IS1512
Length = 1314
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 52 tgctctcagcgatt 65
||||||||||||||
Sbjct: 766 tgctctcagcgatt 779
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_149_length_275_cov_0.737374_ID_5468
(275 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISNpe18 | IS5 | Natrinema pellirubrum | 32 | 0.35 | |
| ISHla6 | IS5 | Halorubrum lacusprofundi | 32 | 0.35 | |
| ISMpo6 | IS1182 | Methylobacterium populi | 32 | 0.35 | |
| ISPsp5 | IS1182 | Pseudomonas sp. | 32 | 0.35 | |
| ISPpa1 | IS256 | Paracoccus pantotrophus | 32 | 0.35 | |
| ISHti1 | IS200/IS605 | IS605 | Halorhabdus tiamatea | 30 | 1.4 |
| ISHli1 | IS5 | ISH1 | Halohasta litchfieldiae | 30 | 1.4 |
| ISStma15 | IS3 | IS51 | Stenotrophomonas maltophilia | 30 | 1.4 |
| ISRel16 | IS21 | Rhizobium etli | 30 | 1.4 | |
| ISRel6 | IS630 | Rhizobium etli | 30 | 1.4 | |
| ISBusp3 | IS5 | Burkholderia sp. | 30 | 1.4 | |
| ISMno31 | IS3 | IS150 | Methylobacterium nodulans | 30 | 1.4 |
| ISMno11 | IS630 | Methylobacterium nodulans | 30 | 1.4 | |
| ISMex26 | ISL3 | Methylobacterium extorquens | 30 | 1.4 | |
| ISAzo15 | IS66 | Azoarcus sp. | 30 | 1.4 | |
| ISRme4 | IS21 | Cupriavidus metallidurans | 30 | 1.4 | |
| ISMmg4 | IS701 | Magnetospirillum magneticum | 30 | 1.4 | |
| ISBlo12 | IS607 | Bifidobacterium longum | 30 | 1.4 | |
| ISRso14 | IS3 | IS407 | Ralstonia solanacearum | 30 | 1.4 |
| IS1162 | IS21 | - | Pseudomonas fluorescens | 30 | 1.4 |
| Tn5403 | Tn3 | Klebsiella pneumoniae | 28 | 5.4 | |
| TnAs3 | Tn3 | Aeromonas salmonicida | 28 | 5.4 | |
| ISNamo21 | IS200/IS605 | IS1341 | Natronomonas moolapensis | 28 | 5.4 |
| ISMet1 | ISKra4 | ISAzba1 | Methylocystis sp. | 28 | 5.4 |
| ISNagr8 | IS630 | Natronobacterium gregoryi | 28 | 5.4 | |
| ISAzs25 | IS1380 | Azospirillum sp. | 28 | 5.4 | |
| ISApr13 | IS5 | Alpha proteobacterium | 28 | 5.4 | |
| ISAisp4 | IS110 | Acidovorax sp. | 28 | 5.4 | |
| ISAzo21 | IS66 | Azoarcus sp. | 28 | 5.4 | |
| ISAzo19 | IS66 | Azoarcus sp. | 28 | 5.4 | |
| ISThsp9 | Tn3 | Thiomonas sp. | 28 | 5.4 | |
| ISAzo12 | IS21 | Azoarcus sp. | 28 | 5.4 | |
| ISMno3 | IS66 | ISBst12 | Methylobacterium nodulans | 28 | 5.4 |
| ISRhru1 | IS1595 | ISSod11 | Rhodospirillum rubrum | 28 | 5.4 |
| ISPen2 | IS3 | IS51 | Pseudomonas entomophila | 28 | 5.4 |
| ISPpu22 | IS3 | IS51 | Pseudomonas putida | 28 | 5.4 |
| ISAzo4 | IS21 | Azoarcus sp. | 28 | 5.4 | |
| ISLxx3 | IS21 | Leifsonia xyli | 28 | 5.4 | |
| IS117 | IS110 | - | Streptomyces coelicolor | 28 | 5.4 |
>ISNpe18
Length = 1070
Score = 32.2 bits (16), Expect = 0.35
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 16 ctcgacgaggcggtcg 31
||||||||||||||||
Sbjct: 412 ctcgacgaggcggtcg 397
>ISHla6
Length = 1069
Score = 32.2 bits (16), Expect = 0.35
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 16 ctcgacgaggcggtcg 31
||||||||||||||||
Sbjct: 412 ctcgacgaggcggtcg 397
>ISMpo6
Length = 1593
Score = 32.2 bits (16), Expect = 0.35
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 172 ctcgatctgctcgatg 187
||||||||||||||||
Sbjct: 582 ctcgatctgctcgatg 567
>ISPsp5
Length = 1617
Score = 32.2 bits (16), Expect = 0.35
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 142 ctgcgcgcctacctgg 157
||||||||||||||||
Sbjct: 199 ctgcgcgcctacctgg 214
>ISPpa1
Length = 1376
Score = 32.2 bits (16), Expect = 0.35
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 235 gatctggtgcgcgacg 250
||||||||||||||||
Sbjct: 159 gatctggtgcgcgacg 174
>ISHti1
Length = 2131
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 180 gctcgatgtactgtt 194
|||||||||||||||
Sbjct: 134 gctcgatgtactgtt 148
>ISHli1
Length = 926
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 164 attcttcgctcgatc 178
|||||||||||||||
Sbjct: 695 attcttcgctcgatc 709
>ISStma15
Length = 1250
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 87 acgtctgatgaaggc 101
|||||||||||||||
Sbjct: 609 acgtctgatgaaggc 623
>ISRel16
Length = 2597
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 110 cgcagggccggatag 124
|||||||||||||||
Sbjct: 1141 cgcagggccggatag 1127
>ISRel6
Length = 1047
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 171 gctcgatctgctcga 185
|||||||||||||||
Sbjct: 317 gctcgatctgctcga 303
>ISBusp3
Length = 1349
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 97 aaggcgtacgacgcg 111
|||||||||||||||
Sbjct: 872 aaggcgtacgacgcg 886
>ISMno31
Length = 1510
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 29 tcgtggcctggaagc 43
|||||||||||||||
Sbjct: 958 tcgtggcctggaagc 972
>ISMno11
Length = 1058
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 204 gctcaagctggccgg 218
|||||||||||||||
Sbjct: 506 gctcaagctggccgg 492
>ISMex26
Length = 1676
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 171 gctcgatctgctcga 185
|||||||||||||||
Sbjct: 1594 gctcgatctgctcga 1608
>ISAzo15
Length = 2441
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 92 tgatgaaggcgtacg 106
|||||||||||||||
Sbjct: 534 tgatgaaggcgtacg 520
>ISRme4
Length = 2469
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 142 ctgcgcgcctacctg 156
|||||||||||||||
Sbjct: 606 ctgcgcgcctacctg 620
>ISMmg4
Length = 1507
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 10 ggtgatctcgacgag 24
|||||||||||||||
Sbjct: 1135 ggtgatctcgacgag 1121
>ISBlo12
Length = 2003
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 235 gatctggtgcgcgac 249
|||||||||||||||
Sbjct: 532 gatctggtgcgcgac 546
>ISRso14
Length = 1234
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 21 cgaggcggtcgtggc 35
|||||||||||||||
Sbjct: 886 cgaggcggtcgtggc 872
>IS1162
Length = 2634
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 249 cgaattgcggcgcaa 263
|||||||||||||||
Sbjct: 501 cgaattgcggcgcaa 515
>Tn5403
Length = 3663
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 170 cgctcgatctgctc 183
||||||||||||||
Sbjct: 398 cgctcgatctgctc 385
>TnAs3
Length = 18735
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 34 gcctggaagcggat 47
||||||||||||||
Sbjct: 732 gcctggaagcggat 745
>ISNamo21
Length = 1836
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 70 ctctcgctcgccgc 83
||||||||||||||
Sbjct: 1414 ctctcgctcgccgc 1401
>ISMet1
Length = 1557
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 171 gctcgatctgctcg 184
||||||||||||||
Sbjct: 670 gctcgatctgctcg 657
>ISNagr8
Length = 1152
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 70 ctctcgctcgccgc 83
||||||||||||||
Sbjct: 1048 ctctcgctcgccgc 1061
>ISAzs25
Length = 1614
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 32 tggcctggaagcgg 45
||||||||||||||
Sbjct: 940 tggcctggaagcgg 927
>ISApr13
Length = 1556
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 40 aagcggatcgaagg 53
||||||||||||||
Sbjct: 1023 aagcggatcgaagg 1036
>ISAisp4
Length = 1614
Score = 28.2 bits (14), Expect = 5.4
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 171 gctcgatctgctcgatgt 188
||||||||||||| ||||
Sbjct: 1003 gctcgatctgctcaatgt 986
>ISAzo21
Length = 2423
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 175 gatctgctcgatgt 188
||||||||||||||
Sbjct: 1696 gatctgctcgatgt 1683
>ISAzo19
Length = 2423
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 175 gatctgctcgatgt 188
||||||||||||||
Sbjct: 1696 gatctgctcgatgt 1683
>ISThsp9
Length = 6215
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 143 tgcgcgcctacctg 156
||||||||||||||
Sbjct: 1299 tgcgcgcctacctg 1312
>ISAzo12
Length = 3075
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 168 ttcgctcgatctgc 181
||||||||||||||
Sbjct: 1880 ttcgctcgatctgc 1893
>ISMno3
Length = 1364
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 236 atctggtgcgcgac 249
||||||||||||||
Sbjct: 879 atctggtgcgcgac 892
>ISRhru1
Length = 1027
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 13 gatctcgacgaggc 26
||||||||||||||
Sbjct: 508 gatctcgacgaggc 495
>ISPen2
Length = 1232
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 92 tgatgaaggcgtac 105
||||||||||||||
Sbjct: 357 tgatgaaggcgtac 344
>ISPpu22
Length = 1232
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 92 tgatgaaggcgtac 105
||||||||||||||
Sbjct: 357 tgatgaaggcgtac 344
>ISAzo4
Length = 2757
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 198 ccgcacgctcaagc 211
||||||||||||||
Sbjct: 621 ccgcacgctcaagc 634
>ISLxx3
Length = 2637
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 17 tcgacgaggcggtc 30
||||||||||||||
Sbjct: 1910 tcgacgaggcggtc 1923
>IS117
Length = 2527
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 16 ctcgacgaggcggt 29
||||||||||||||
Sbjct: 234 ctcgacgaggcggt 247
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_150_length_274_cov_0.741117_ID_5470
(274 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISSyth3 | ISLre2 | Symbiobacterium thermophilum | 36 | 0.022 | |
| ISGvi7 | ISKra4 | ISMich2 | Gloeobacter violaceus | 30 | 1.4 |
| ISNml4 | IS256 | Nakamurella multipartita | 30 | 1.4 | |
| ISMex22 | Tn3 | Methylobacterium extorquens | 30 | 1.4 | |
| ISXau2 | IS3 | IS51 | Xanthobacter autotrophicus | 30 | 1.4 |
| ISTha3 | IS91 | Thauera sp. | 28 | 5.4 | |
| ISAeme19 | ISL3 | Aeromonas media | 28 | 5.4 | |
| ISHez1 | IS200/IS605 | IS1341 | Halorubrum ezzemoulense | 28 | 5.4 |
| ISHca1 | IS200/IS605 | IS1341 | Halorubrum californiensis | 28 | 5.4 |
| ISHko3 | IS200/IS605 | Halorubrum kocurii | 28 | 5.4 | |
| ISHaar1 | IS200/IS605 | IS1341 | Halorubrum arcis | 28 | 5.4 |
| ISHje2 | IS200/IS605 | IS605 | Halalkalicoccus jeotgali | 28 | 5.4 |
| ISHru2 | IS200/IS605 | IS605 | Halovivax ruber | 28 | 5.4 |
| ISNpe29 | IS200/IS605 | IS1341 | Natrinema pellirubrum | 28 | 5.4 |
| ISNma21 | IS200/IS605 | IS1341 | Natrialba magadii | 28 | 5.4 |
| ISNamo25 | IS200/IS605 | IS1341 | Natronomonas moolapensis | 28 | 5.4 |
| ISHbo4 | IS200/IS605 | IS605 | Halogeometricum borinquense | 28 | 5.4 |
| ISCau1 | IS256 | IS1249 | Corynebacterium aurimucosum | 28 | 5.4 |
| ISAzs12 | ISAs1 | Azospirillum sp. | 28 | 5.4 | |
| ISFsp7 | IS5 | ISL2 | Frankia sp. | 28 | 5.4 |
| ISNph20 | IS200/IS605 | IS1341 | Natronomonas pharaonis | 28 | 5.4 |
| ISAmi1 | IS5 | ISL2 | Actinosynnema mirum | 28 | 5.4 |
| ISRhru4 | IS256 | Rhodospirillum rubrum | 28 | 5.4 | |
| ISFnu7 | IS1182 | Fusobacterium nucleatum | 28 | 5.4 | |
| ISFnu1 | IS1182 | Fusobacterium nucleatum subsp. nucleatum | 28 | 5.4 | |
| ISYps3 | Tn3 | Yersinia pseudotuberculosis | 28 | 5.4 | |
| ISArch14 | IS66 | ISBst12 | uncultured archaeon | 28 | 5.4 |
| ISHma12 | IS200/IS605 | Haloarcula marismortui | 28 | 5.4 | |
| IS1380B | IS1380 | - | Acetobacter pasteurianus | 28 | 5.4 |
| IS1380A | IS1380 | - | Acetobacter pasteurianus | 28 | 5.4 |
>ISSyth3
Length = 1612
Score = 36.2 bits (18), Expect = 0.022
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 119 ggcggaaaaacagcagca 136
||||||||||||||||||
Sbjct: 574 ggcggaaaaacagcagca 591
>ISGvi7
Length = 1220
Score = 30.2 bits (15), Expect = 1.4
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 106 tggttgatgtgctggcgga 124
||||||||||| |||||||
Sbjct: 250 tggttgatgtgttggcgga 232
>ISNml4
Length = 1462
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 144 gtcaagctgctgtgg 158
|||||||||||||||
Sbjct: 1229 gtcaagctgctgtgg 1243
>ISMex22
Length = 3864
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 93 aacttcgcgcaaatg 107
|||||||||||||||
Sbjct: 1642 aacttcgcgcaaatg 1656
>ISXau2
Length = 1238
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 111 gatgtgctggcggaa 125
|||||||||||||||
Sbjct: 555 gatgtgctggcggaa 569
>ISTha3
Length = 2424
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 191 cggcgccggtgcgg 204
||||||||||||||
Sbjct: 290 cggcgccggtgcgg 303
>ISAeme19
Length = 1304
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 155 gtggggcacggcaa 168
||||||||||||||
Sbjct: 636 gtggggcacggcaa 649
>ISHez1
Length = 1579
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 35 ctgcttccacgacg 48
||||||||||||||
Sbjct: 1517 ctgcttccacgacg 1504
>ISHca1
Length = 1549
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 35 ctgcttccacgacg 48
||||||||||||||
Sbjct: 1493 ctgcttccacgacg 1480
>ISHko3
Length = 1862
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 35 ctgcttccacgacg 48
||||||||||||||
Sbjct: 1800 ctgcttccacgacg 1787
>ISHaar1
Length = 1590
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 35 ctgcttccacgacg 48
||||||||||||||
Sbjct: 1514 ctgcttccacgacg 1501
>ISHje2
Length = 1837
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 35 ctgcttccacgacg 48
||||||||||||||
Sbjct: 1775 ctgcttccacgacg 1762
>ISHru2
Length = 1942
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 35 ctgcttccacgacg 48
||||||||||||||
Sbjct: 1820 ctgcttccacgacg 1807
>ISNpe29
Length = 1597
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 35 ctgcttccacgacg 48
||||||||||||||
Sbjct: 1540 ctgcttccacgacg 1527
>ISNma21
Length = 1548
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 35 ctgcttccacgacg 48
||||||||||||||
Sbjct: 1493 ctgcttccacgacg 1480
>ISNamo25
Length = 1529
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 35 ctgcttccacgacg 48
||||||||||||||
Sbjct: 1474 ctgcttccacgacg 1461
>ISHbo4
Length = 1835
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 35 ctgcttccacgacg 48
||||||||||||||
Sbjct: 1773 ctgcttccacgacg 1760
>ISCau1
Length = 1449
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 145 tcaagctgctgtgg 158
||||||||||||||
Sbjct: 419 tcaagctgctgtgg 432
>ISAzs12
Length = 1196
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 142 gcgtcaagctgctg 155
||||||||||||||
Sbjct: 1117 gcgtcaagctgctg 1130
>ISFsp7
Length = 1041
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 41 ccacgacgttgacg 54
||||||||||||||
Sbjct: 235 ccacgacgttgacg 222
>ISNph20
Length = 1624
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 35 ctgcttccacgacg 48
||||||||||||||
Sbjct: 1572 ctgcttccacgacg 1559
>ISAmi1
Length = 883
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 192 ggcgccggtgcggc 205
||||||||||||||
Sbjct: 342 ggcgccggtgcggc 355
>ISRhru4
Length = 1411
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 139 gcggcgtcaagctg 152
||||||||||||||
Sbjct: 809 gcggcgtcaagctg 822
>ISFnu7
Length = 1756
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 4 agtttttccacaaa 17
||||||||||||||
Sbjct: 522 agtttttccacaaa 509
>ISFnu1
Length = 1788
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 4 agtttttccacaaa 17
||||||||||||||
Sbjct: 524 agtttttccacaaa 511
>ISYps3
Length = 5723
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 39 ttccacgacgttga 52
||||||||||||||
Sbjct: 2773 ttccacgacgttga 2760
>ISArch14
Length = 1560
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 124 aaaaacagcagcaa 137
||||||||||||||
Sbjct: 252 aaaaacagcagcaa 265
>ISHma12
Length = 1835
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 35 ctgcttccacgacg 48
||||||||||||||
Sbjct: 1773 ctgcttccacgacg 1760
>IS1380B
Length = 1665
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 131 gcagcaaagcggcg 144
||||||||||||||
Sbjct: 252 gcagcaaagcggcg 239
>IS1380A
Length = 1665
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 131 gcagcaaagcggcg 144
||||||||||||||
Sbjct: 252 gcagcaaagcggcg 239
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_151_length_274_cov_0.730964_ID_5472
(274 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISRel24 | IS66 | Rhizobium etli | 34 | 0.087 | |
| ISThsp3 | IS66 | Thiomonas sp. | 32 | 0.34 | |
| ISRasp1 | IS3 | IS3 | Ralstonia sp. | 32 | 0.34 |
| ISAs29 | IS21 | Aeromonas salmonicida | 30 | 1.4 | |
| ISPeth4 | IS256 | Pelotomaculum thermopropionicum | 30 | 1.4 | |
| ISAzba1 | ISKra4 | ISAzba1 | Azospirillum brasilense | 30 | 1.4 |
| ISAar25 | IS3 | IS3 | Arthrobacter arilaitensis | 30 | 1.4 |
| ISThsp9 | Tn3 | Thiomonas sp. | 30 | 1.4 | |
| ISCARN21 | IS630 | Metagenomic data from CARNOULES | 30 | 1.4 | |
| ISCausp2 | IS1595 | ISNha5 | Caulobacter sp. | 30 | 1.4 |
| ISSsp5 | IS21 | Sphingomonas sp. | 30 | 1.4 | |
| ISRpa5 | ISAs1 | Rhodopseudomonas palustris | 30 | 1.4 | |
| IS427 | IS5 | IS427 | Agrobacterium tumefaciens | 30 | 1.4 |
| IS2001 | ISL3 | - | Bifidobacterium lactis | 30 | 1.4 |
| Tn5403 | Tn3 | Klebsiella pneumoniae | 28 | 5.4 | |
| TnXo19 | Tn3 | Xanthomonas oryzae | 28 | 5.4 | |
| ISRel10 | ISNCY | IS1202 | Rhizobium etli | 28 | 5.4 |
| ISUnCu17 | IS1182 | Uncultured bacteria | 28 | 5.4 | |
| ISEc49 | IS66 | Escherichia coli | 28 | 5.4 | |
| ISPso1 | IS256 | Paracoccus solventivorans | 28 | 5.4 | |
| IS693 | IS66 | Rhizobium sp. | 28 | 5.4 | |
| ISAde2 | IS1182 | Anaeromyxobacter dehalogenans | 28 | 5.4 | |
| ISMex39 | IS21 | Methylobacterium extorquens | 28 | 5.4 | |
| ISAzo32 | IS630 | Azoarcus sp. | 28 | 5.4 | |
| ISCARN39 | IS630 | Metagenomic data from CARNOULES | 28 | 5.4 | |
| ISCARN17 | IS21 | Metagenomic data from CARNOULES | 28 | 5.4 | |
| ISAli17 | IS5 | IS903 | Azospirillum lipoferum | 28 | 5.4 |
| ISFsp11 | IS66 | ISBst12 | Frankia sp. | 28 | 5.4 |
| ISMsm1 | IS3 | IS51 | Mycobacterium smegmatis | 28 | 5.4 |
| ISRle6 | IS6 | Rhizobium leguminosarum | 28 | 5.4 | |
| ISGbe2 | IS3 | IS2 | Granulibacter bethesdensis | 28 | 5.4 |
| ISIba1 | IS3 | IS407 | Idiomarina baltica OS145 | 28 | 5.4 |
| ISIba2 | IS3 | IS407 | Idiomarina baltica | 28 | 5.4 |
| ISMyma5 | IS481 | - | Mycobacterium marinum | 28 | 5.4 |
| ISCef3 | IS982 | Corynebacterium efficiens | 28 | 5.4 | |
| IS882 | Tn3 | Ralstonia eutropha | 28 | 5.4 | |
| ISBcen1 | IS110 | IS1111 | Burkholderia cenocepacia | 28 | 5.4 |
| ISXc4 | Tn3 | - | Xanthomonas campestris | 28 | 5.4 |
| ISV-M52 | IS5 | IS903 | Vibrio mimicus | 28 | 5.4 |
| ISH50 | IS1595 | ISH4 | Halobacterium salinarum | 28 | 5.4 |
| ISH4 | IS1595 | ISH4 | Halobacterium sp. | 28 | 5.4 |
| IS5377 | IS4 | IS4Sa | Bacillus stearothermophilus | 28 | 5.4 |
>ISRel24
Length = 2837
Score = 34.2 bits (17), Expect = 0.087
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 187 tcggcgacagcacggcg 203
|||||||||||||||||
Sbjct: 190 tcggcgacagcacggcg 206
>ISThsp3
Length = 2455
Score = 32.2 bits (16), Expect = 0.34
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 119 gaagctgcccacctgg 134
||||||||||||||||
Sbjct: 2327 gaagctgcccacctgg 2342
>ISRasp1
Length = 1275
Score = 32.2 bits (16), Expect = 0.34
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 73 agctgccggtggcgtcgaac 92
|||||||||||||| |||||
Sbjct: 682 agctgccggtggcgccgaac 701
>ISAs29
Length = 2613
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 231 agaaagcccatgccg 245
|||||||||||||||
Sbjct: 1522 agaaagcccatgccg 1536
>ISPeth4
Length = 1488
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 70 cgtagctgccggtgg 84
|||||||||||||||
Sbjct: 1100 cgtagctgccggtgg 1086
>ISAzba1
Length = 1465
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 19 gcagcagcgcggcca 33
|||||||||||||||
Sbjct: 1165 gcagcagcgcggcca 1151
>ISAar25
Length = 1309
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 233 aaagcccatgccggc 247
|||||||||||||||
Sbjct: 363 aaagcccatgccggc 377
>ISThsp9
Length = 6215
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 104 cagccacacgccgag 118
|||||||||||||||
Sbjct: 5988 cagccacacgccgag 5974
>ISCARN21
Length = 1249
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 49 ccgacagcgtccaca 63
|||||||||||||||
Sbjct: 442 ccgacagcgtccaca 428
>ISCausp2
Length = 7915
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 204 ctggtcagcggcgcc 218
|||||||||||||||
Sbjct: 784 ctggtcagcggcgcc 798
>ISSsp5
Length = 2501
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 199 cggcgctggtcagcg 213
|||||||||||||||
Sbjct: 2029 cggcgctggtcagcg 2043
>ISRpa5
Length = 1193
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 191 cgacagcacggcgct 205
|||||||||||||||
Sbjct: 802 cgacagcacggcgct 788
>IS427
Length = 1271
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 112 cgccgaggaagctgc 126
|||||||||||||||
Sbjct: 264 cgccgaggaagctgc 250
>IS2001
Length = 1406
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 75 ctgccggtggcgtcg 89
|||||||||||||||
Sbjct: 924 ctgccggtggcgtcg 910
>Tn5403
Length = 3663
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 62 caccacgtcgtagc 75
||||||||||||||
Sbjct: 529 caccacgtcgtagc 542
>TnXo19
Length = 18767
Score = 28.2 bits (14), Expect = 5.4
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 20 cagcagcgcggccagcac 37
||||||||||| ||||||
Sbjct: 8990 cagcagcgcggacagcac 8973
>ISRel10
Length = 2528
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 76 tgccggtggcgtcg 89
||||||||||||||
Sbjct: 661 tgccggtggcgtcg 648
>ISUnCu17
Length = 1481
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 59 ccacaccacgtcgt 72
||||||||||||||
Sbjct: 292 ccacaccacgtcgt 279
>ISEc49
Length = 2766
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 138 ctgaagaagacgaa 151
||||||||||||||
Sbjct: 1128 ctgaagaagacgaa 1141
>ISPso1
Length = 1400
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 180 ccgaagatcggcga 193
||||||||||||||
Sbjct: 101 ccgaagatcggcga 88
>IS693
Length = 3078
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 130 cctggtggctgaag 143
||||||||||||||
Sbjct: 1571 cctggtggctgaag 1584
>ISAde2
Length = 1498
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 24 agcgcggccagcac 37
||||||||||||||
Sbjct: 466 agcgcggccagcac 453
>ISMex39
Length = 2456
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 83 ggcgtcgaacacca 96
||||||||||||||
Sbjct: 624 ggcgtcgaacacca 611
>ISAzo32
Length = 1100
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 50 cgacagcgtccaca 63
||||||||||||||
Sbjct: 359 cgacagcgtccaca 346
>ISCARN39
Length = 1106
Score = 28.2 bits (14), Expect = 5.4
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 89 gaacaccaggccgcccag 106
|||| |||||||||||||
Sbjct: 454 gaaccccaggccgcccag 437
>ISCARN17
Length = 2539
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 94 ccaggccgcccagc 107
||||||||||||||
Sbjct: 1815 ccaggccgcccagc 1828
>ISAli17
Length = 1109
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 198 acggcgctggtcag 211
||||||||||||||
Sbjct: 437 acggcgctggtcag 450
>ISFsp11
Length = 1836
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 77 gccggtggcgtcga 90
||||||||||||||
Sbjct: 1146 gccggtggcgtcga 1133
>ISMsm1
Length = 1345
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 22 gcagcgcggccagc 35
||||||||||||||
Sbjct: 293 gcagcgcggccagc 280
>ISRle6
Length = 891
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 179 gccgaagatcggcg 192
||||||||||||||
Sbjct: 665 gccgaagatcggcg 678
>ISGbe2
Length = 1352
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 36 acgccaaggccgac 49
||||||||||||||
Sbjct: 575 acgccaaggccgac 588
>ISIba1
Length = 1197
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 151 agccgaacagcgta 164
||||||||||||||
Sbjct: 425 agccgaacagcgta 438
>ISIba2
Length = 1197
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 151 agccgaacagcgta 164
||||||||||||||
Sbjct: 425 agccgaacagcgta 438
>ISMyma5
Length = 1838
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 82 tggcgtcgaacacc 95
||||||||||||||
Sbjct: 992 tggcgtcgaacacc 979
>ISCef3
Length = 989
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 180 ccgaagatcggcga 193
||||||||||||||
Sbjct: 584 ccgaagatcggcga 597
>IS882
Length = 3363
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 25 gcgcggccagcacg 38
||||||||||||||
Sbjct: 1080 gcgcggccagcacg 1093
>ISBcen1
Length = 1357
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 26 cgcggccagcacgc 39
||||||||||||||
Sbjct: 755 cgcggccagcacgc 742
>ISXc4
Length = 6938
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 23 cagcgcggccagca 36
||||||||||||||
Sbjct: 1459 cagcgcggccagca 1446
>ISV-M52
Length = 1044
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 148 cgaagccgaacagc 161
||||||||||||||
Sbjct: 1021 cgaagccgaacagc 1008
>ISH50
Length = 996
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 43 ggccgaccgacagc 56
||||||||||||||
Sbjct: 664 ggccgaccgacagc 677
>ISH4
Length = 1004
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 43 ggccgaccgacagc 56
||||||||||||||
Sbjct: 670 ggccgaccgacagc 683
>IS5377
Length = 1249
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 116 gaggaagctgccca 129
||||||||||||||
Sbjct: 1157 gaggaagctgccca 1144
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_152_length_274_cov_0.720812_ID_5474
(274 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISStau11 | ISAzo13 | Stigmatella aurantiaca | 36 | 0.022 | |
| ISAzs18 | IS66 | Azospirillum sp. | 32 | 0.34 | |
| ISCARN106 | IS630 | Metagenomic data from CARNOULES | 32 | 0.34 | |
| ISXcd1 | IS3 | IS407 | Xanthomonas axonopodis | 32 | 0.34 |
| ISMdi14B | IS110 | IS1111 | Methylobacterium dichloromethanicum DM4 | 30 | 1.4 |
| ISSpu24 | IS66 | Shewanella putrefaciens | 30 | 1.4 | |
| ISRop1 | IS1380 | Rhodococcus opacus | 30 | 1.4 | |
| ISGbr1 | IS1380 | Gordonia bronchialis | 30 | 1.4 | |
| ISStsp3 | IS1380 | Streptomyces sp. | 30 | 1.4 | |
| ISGdi10 | IS481 | Gluconacetobacter diazotrophicus | 30 | 1.4 | |
| ISRle3 | IS66 | Rhizobium leguminosarum | 30 | 1.4 | |
| ISRl1 | IS66 | - | Rhizobium leguminosarum | 30 | 1.4 |
| ISTni2 | IS481 | Thioalkalivibrio nitratireducens | 28 | 5.4 | |
| ISAzs17 | Tn3 | Azospirillum sp. | 28 | 5.4 | |
| ISRel24 | IS66 | Rhizobium etli | 28 | 5.4 | |
| ISPam2 | IS5 | IS903 | Paracoccus aminophilus | 28 | 5.4 |
| ISSysp5 | IS5 | Synechococcus sp. | 28 | 5.4 | |
| ISRhsp7 | IS5 | Rhodobacter sphaeroides | 28 | 5.4 | |
| ISRop2 | ISAzo13 | Rhodococcus opacus | 28 | 5.4 | |
| ISMno32 | IS1182 | Methylobacterium nodulans | 28 | 5.4 | |
| ISMra2 | IS5 | IS427 | Methylobacterium radiotolerans | 28 | 5.4 |
| ISMch5 | IS3 | IS51 | Methylobacterium chloromethanicum | 28 | 5.4 |
| ISStma8 | IS110 | Stenotrophomonas maltophilia | 28 | 5.4 | |
| ISStma3 | IS481 | Stenotrophomonas maltophilia | 28 | 5.4 | |
| ISAcma25 | IS630 | Acaryochloris marina | 28 | 5.4 | |
| ISCARN30 | IS5 | IS427 | Metagenomic data from CARNOULES | 28 | 5.4 |
| ISRosp4 | IS66 | Roseobacter sp. | 28 | 5.4 | |
| ISAli3 | IS630 | Azospirillum lipoferum | 28 | 5.4 | |
| ISCku7 | IS66 | ISBst12 | Candidatus Kuenenia stuttgartiensis | 28 | 5.4 |
| ISApr4 | IS1595 | ISNwi1 | Alpha proteobacterium | 28 | 5.4 |
| ISRasp1 | IS3 | IS3 | Ralstonia sp. | 28 | 5.4 |
| ISXac2 | IS3 | IS407 | Xanthomonas axonopodis | 28 | 5.4 |
| IS1595 | IS1595 | IS1595 | Xanthomonas campestris | 28 | 5.4 |
| ISCc4 | IS110 | IS1111 | Caulobacter crescentus | 28 | 5.4 |
| ISRm9 | IS21 | - | Rhizobium meliloti | 28 | 5.4 |
| ISPa42 | Tn3 | Pseudomonas aeruginosa | 28 | 5.4 | |
| ISMk1 | ISNCY | - | Mycobacterium kansasii | 28 | 5.4 |
| IS866 | IS66 | - | Agrobacterium tumefaciens | 28 | 5.4 |
>ISStau11
Length = 1349
Score = 36.2 bits (18), Expect = 0.022
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 164 gcaaggccttgcccagtt 181
||||||||||||||||||
Sbjct: 754 gcaaggccttgcccagtt 737
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 164 gcaaggccttgccc 177
||||||||||||||
Sbjct: 743 gcaaggccttgccc 756
>ISAzs18
Length = 2633
Score = 32.2 bits (16), Expect = 0.34
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 242 cctcggcgggctggcc 257
||||||||||||||||
Sbjct: 2158 cctcggcgggctggcc 2143
>ISCARN106
Length = 1148
Score = 32.2 bits (16), Expect = 0.34
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 155 cgtcggccagcaaggc 170
||||||||||||||||
Sbjct: 210 cgtcggccagcaaggc 195
>ISXcd1
Length = 1195
Score = 32.2 bits (16), Expect = 0.34
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 150 gcggccgtcggccagc 165
||||||||||||||||
Sbjct: 734 gcggccgtcggccagc 719
>ISMdi14B
Length = 1315
Score = 30.2 bits (15), Expect = 1.4
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 204 gctgtcgcgctgcaggcag 222
|||| ||||||||||||||
Sbjct: 930 gctgacgcgctgcaggcag 948
>ISSpu24
Length = 2524
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 230 agtgcttgacggcct 244
|||||||||||||||
Sbjct: 916 agtgcttgacggcct 902
>ISRop1
Length = 4160
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 92 cgcccttgtcggtgg 106
|||||||||||||||
Sbjct: 2771 cgcccttgtcggtgg 2757
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 236 tgacggcctcggcg 249
||||||||||||||
Sbjct: 2640 tgacggcctcggcg 2653
>ISGbr1
Length = 1645
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 92 cgcccttgtcggtgg 106
|||||||||||||||
Sbjct: 276 cgcccttgtcggtgg 262
>ISStsp3
Length = 1925
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 83 cctggatgtcgccct 97
|||||||||||||||
Sbjct: 345 cctggatgtcgccct 359
>ISGdi10
Length = 1229
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 172 ttgcccagttgcttc 186
|||||||||||||||
Sbjct: 185 ttgcccagttgcttc 171
>ISRle3
Length = 2500
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 39 ggctttttccagccg 53
|||||||||||||||
Sbjct: 679 ggctttttccagccg 665
>ISRl1
Length = 2495
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 39 ggctttttccagccg 53
|||||||||||||||
Sbjct: 676 ggctttttccagccg 662
>ISTni2
Length = 3451
Score = 28.2 bits (14), Expect = 5.4
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 16 tcgggggcggcgttggcc 33
||||| ||||||||||||
Sbjct: 2105 tcgggtgcggcgttggcc 2088
>ISAzs17
Length = 7252
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 153 gccgtcggccagca 166
||||||||||||||
Sbjct: 6077 gccgtcggccagca 6064
>ISRel24
Length = 2837
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 161 ccagcaaggccttg 174
||||||||||||||
Sbjct: 554 ccagcaaggccttg 567
>ISPam2
Length = 1054
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 89 tgtcgcccttgtcg 102
||||||||||||||
Sbjct: 584 tgtcgcccttgtcg 571
>ISSysp5
Length = 1398
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 159 ggccagcaaggcct 172
||||||||||||||
Sbjct: 698 ggccagcaaggcct 685
>ISRhsp7
Length = 1397
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 148 gggcggccgtcggc 161
||||||||||||||
Sbjct: 242 gggcggccgtcggc 229
>ISRop2
Length = 2171
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 74 cgcgcgcggcctgg 87
||||||||||||||
Sbjct: 1420 cgcgcgcggcctgg 1407
>ISMno32
Length = 1538
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 236 tgacggcctcggcg 249
||||||||||||||
Sbjct: 583 tgacggcctcggcg 570
>ISMra2
Length = 905
Score = 28.2 bits (14), Expect = 5.4
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 242 cctcggcgggctggcccg 259
||||||||||| ||||||
Sbjct: 143 cctcggcgggccggcccg 126
>ISMch5
Length = 1240
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 73 tcgcgcgcggcctg 86
||||||||||||||
Sbjct: 154 tcgcgcgcggcctg 141
>ISStma8
Length = 1224
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 210 gcgctgcaggcagt 223
||||||||||||||
Sbjct: 788 gcgctgcaggcagt 801
>ISStma3
Length = 1023
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 139 gcttcttccgggcg 152
||||||||||||||
Sbjct: 175 gcttcttccgggcg 162
>ISAcma25
Length = 950
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 1 aagcggccgagtca 14
||||||||||||||
Sbjct: 577 aagcggccgagtca 590
>ISCARN30
Length = 832
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 90 gtcgcccttgtcgg 103
||||||||||||||
Sbjct: 576 gtcgcccttgtcgg 563
>ISRosp4
Length = 2709
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 74 cgcgcgcggcctgg 87
||||||||||||||
Sbjct: 2239 cgcgcgcggcctgg 2226
>ISAli3
Length = 1167
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 156 gtcggccagcaagg 169
||||||||||||||
Sbjct: 665 gtcggccagcaagg 678
>ISCku7
Length = 2368
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 184 ttccatgcggcaga 197
||||||||||||||
Sbjct: 1887 ttccatgcggcaga 1874
>ISApr4
Length = 3691
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 68 ccatttcgcgcgcg 81
||||||||||||||
Sbjct: 1736 ccatttcgcgcgcg 1749
>ISRasp1
Length = 1275
Score = 28.2 bits (14), Expect = 5.4
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 93 gcccttgtcggtggccac 110
||||| ||||||||||||
Sbjct: 782 gccctcgtcggtggccac 765
>ISXac2
Length = 1195
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 150 gcggccgtcggcca 163
||||||||||||||
Sbjct: 734 gcggccgtcggcca 721
>IS1595
Length = 1072
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 45 ttccagccggcgga 58
||||||||||||||
Sbjct: 760 ttccagccggcgga 747
>ISCc4
Length = 1174
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 47 ccagccggcggatg 60
||||||||||||||
Sbjct: 985 ccagccggcggatg 972
>ISRm9
Length = 2798
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 201 caggctgtcgcgct 214
||||||||||||||
Sbjct: 1099 caggctgtcgcgct 1086
>ISPa42
Length = 16941
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 114 gtgcccctggcgat 127
||||||||||||||
Sbjct: 7610 gtgcccctggcgat 7623
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 158 cggccagcaaggcc 171
||||||||||||||
Sbjct: 10381 cggccagcaaggcc 10394
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 98 tgtcggtggccacc 111
||||||||||||||
Sbjct: 11404 tgtcggtggccacc 11417
>ISMk1
Length = 947
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 253 tggcccgcctgcaa 266
||||||||||||||
Sbjct: 194 tggcccgcctgcaa 181
>IS866
Length = 2716
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 114 gtgcccctggcgat 127
||||||||||||||
Sbjct: 370 gtgcccctggcgat 383
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_153_length_274_cov_0.715736_ID_5476
(274 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISTko2 | IS607 | Thermococcus kodakarensis | 40 | 0.001 | |
| ISHma11 | IS5 | ISH1 | Haloarcula marismortui | 36 | 0.022 |
| ISHth2 | ISH6 | Halococcus thailandensis | 30 | 1.4 | |
| ISRosp3 | IS1595 | ISNha5 | Roseobacter sp. | 30 | 1.4 |
| ISPen1 | IS4 | IS4 | Pseudomonas entomophila | 30 | 1.4 |
| ISPpu12 | ISL3 | Pseudomonas putida | 30 | 1.4 | |
| ISRjo4 | IS256 | Rhodococcus jostii | 28 | 5.4 | |
| ISPa38 | Tn3 | Pseudomonas aeruginosa | 28 | 5.4 | |
| ISPam2 | IS5 | IS903 | Paracoccus aminophilus | 28 | 5.4 |
| ISMno34 | IS6 | Methylobacterium nodulans | 28 | 5.4 | |
| IS684 | IS66 | Pseudomonas syringae | 28 | 5.4 | |
| ISCARN107 | IS5 | IS5 | Metagenomic data from CARNOULES | 28 | 5.4 |
| ISCro3 | IS4 | Citrobacter rodentium | 28 | 5.4 | |
| ISPfu2 | IS6 | Pyrococcus furiosus | 28 | 5.4 | |
| ISAfe1 | IS110 | IS1111 | Acidithiobacillus ferroxidans | 28 | 5.4 |
| ISBlo6 | ISL3 | Bifidobacterium longum | 28 | 5.4 | |
| ISWosp9 | IS4 | IS231 | Wolbachia sp. | 28 | 5.4 |
| IS51 | IS3 | IS51 | Pseudomonas syringae | 28 | 5.4 |
>ISTko2
Length = 1855
Score = 40.1 bits (20), Expect = 0.001
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 173 ggaggaagattcagaaaaag 192
||||||||||||||||||||
Sbjct: 1305 ggaggaagattcagaaaaag 1324
>ISHma11
Length = 929
Score = 36.2 bits (18), Expect = 0.022
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 218 tcttgctgtccttgacgt 235
||||||||||||||||||
Sbjct: 516 tcttgctgtccttgacgt 533
>ISHth2
Length = 1442
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 224 tgtccttgacgtagt 238
|||||||||||||||
Sbjct: 368 tgtccttgacgtagt 354
>ISRosp3
Length = 3472
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 180 gattcagaaaaagaa 194
|||||||||||||||
Sbjct: 321 gattcagaaaaagaa 335
>ISPen1
Length = 1514
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 198 cttgccaccggcctt 212
|||||||||||||||
Sbjct: 1016 cttgccaccggcctt 1002
>ISPpu12
Length = 3372
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 206 cggccttgatggtct 220
|||||||||||||||
Sbjct: 915 cggccttgatggtct 901
>ISRjo4
Length = 1458
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 155 cgttggagcggtcg 168
||||||||||||||
Sbjct: 154 cgttggagcggtcg 141
>ISPa38
Length = 6455
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 160 gagcggtcggggag 173
||||||||||||||
Sbjct: 2004 gagcggtcggggag 1991
>ISPam2
Length = 1054
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 199 ttgccaccggcctt 212
||||||||||||||
Sbjct: 201 ttgccaccggcctt 188
>ISMno34
Length = 889
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 167 cggggaggaggaag 180
||||||||||||||
Sbjct: 440 cggggaggaggaag 427
>IS684
Length = 2040
Score = 28.2 bits (14), Expect = 5.4
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 174 gaggaagattcagaaaaa 191
||||| ||||||||||||
Sbjct: 239 gaggacgattcagaaaaa 222
>ISCARN107
Length = 1172
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 215 tggtcttgctgtcc 228
||||||||||||||
Sbjct: 637 tggtcttgctgtcc 624
>ISCro3
Length = 1430
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 206 cggccttgatggtc 219
||||||||||||||
Sbjct: 1358 cggccttgatggtc 1345
>ISPfu2
Length = 782
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 182 ttcagaaaaagaag 195
||||||||||||||
Sbjct: 52 ttcagaaaaagaag 65
>ISAfe1
Length = 1424
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 195 gaccttgccaccgg 208
||||||||||||||
Sbjct: 913 gaccttgccaccgg 900
>ISBlo6
Length = 1330
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 81 gcggccggtcttca 94
||||||||||||||
Sbjct: 971 gcggccggtcttca 958
>ISWosp9
Length = 1437
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 182 ttcagaaaaagaag 195
||||||||||||||
Sbjct: 832 ttcagaaaaagaag 845
>IS51
Length = 1311
Score = 28.2 bits (14), Expect = 5.4
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 48 gtcgccggggcgattggc 65
|||| |||||||||||||
Sbjct: 450 gtcgacggggcgattggc 433
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_154_length_274_cov_0.482234_ID_5478
(274 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISLesp4 | ISKra4 | ISKra4 | Leptolyngbya sp. | 34 | 0.087 |
| ISBas1 | IS1182 | Bacteroides sp. | 28 | 5.4 | |
| ISDth2 | ISNCY | ISDol1 | Desulfonatronospira thiodismutans | 28 | 5.4 |
| ISPrsp2 | IS982 | Parabacteroides sp. | 28 | 5.4 | |
| ISRba1 | IS4 | IS4 | Rhodopirellula baltica | 28 | 5.4 |
| IS292 | IS66 | - | Agrobacterium sp | 28 | 5.4 |
>ISLesp4
Length = 1696
Score = 34.2 bits (17), Expect = 0.087
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 2 gtttggaaagcggcttt 18
|||||||||||||||||
Sbjct: 1203 gtttggaaagcggcttt 1219
>ISBas1
Length = 1757
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 78 gaagacaagtttga 91
||||||||||||||
Sbjct: 1147 gaagacaagtttga 1160
>ISDth2
Length = 1658
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 27 aagggggtaatcac 40
||||||||||||||
Sbjct: 1583 aagggggtaatcac 1596
>ISPrsp2
Length = 1021
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 138 cgtattgcccgttc 151
||||||||||||||
Sbjct: 468 cgtattgcccgttc 481
>ISRba1
Length = 1481
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 161 gcaggggtttgagc 174
||||||||||||||
Sbjct: 698 gcaggggtttgagc 711
>IS292
Length = 2496
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 254 tgttgatgacgagc 267
||||||||||||||
Sbjct: 1385 tgttgatgacgagc 1372
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_155_length_273_cov_1.11224_ID_5480
(273 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISHmo2 | IS1182 | Heliobacterium modesticaldum | 34 | 0.087 | |
| IS6100 | IS6 | - | Mycobacterium fortuitum | 32 | 0.34 |
| ISGbr1 | IS1380 | Gordonia bronchialis | 30 | 1.4 | |
| ISRel26 | ISNCY | IS1202 | Rhizobium etli | 28 | 5.4 |
| ISSoc10 | IS200/IS605 | Synechococcus sp | 28 | 5.4 | |
| ISMyma9 | IS21 | Mycobacterium marinum | 28 | 5.4 | |
| ISGsi1 | IS256 | IS1249 | Gordonia sihwensis | 28 | 5.4 |
| ISCre2 | IS256 | IS1249 | Corynebacterium resistens | 28 | 5.4 |
| ISPfe2 | IS1634 | Paracoccus ferrooxidans | 28 | 5.4 | |
| ISRel16 | IS21 | Rhizobium etli | 28 | 5.4 | |
| ISGeob1 | IS5 | ISL2 | Geodermatophilus obscurus | 28 | 5.4 |
| ISAmi1 | IS5 | ISL2 | Actinosynnema mirum | 28 | 5.4 |
| ISStpr1 | IS481 | Streptomyces pristinaespiralis | 28 | 5.4 | |
| ISAfe2 | IS256 | Acidithiobacillus ferrooxidans | 28 | 5.4 | |
| ISPpr11 | ISAs1 | Photobacterium profundum | 28 | 5.4 | |
| IS866 | IS66 | - | Agrobacterium tumefaciens | 28 | 5.4 |
| IS408 | IS21 | - | Burkholderia cepacia | 28 | 5.4 |
| IS2020 | IS6 | - | Brucella melitensis | 28 | 5.4 |
| IS1246 | IS5 | IS5 | Pseudomonas putida | 28 | 5.4 |
>ISHmo2
Length = 1914
Score = 34.2 bits (17), Expect = 0.087
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 179 tcatcgcccgcaccata 195
|||||||||||||||||
Sbjct: 1207 tcatcgcccgcaccata 1191
>IS6100
Length = 880
Score = 32.2 bits (16), Expect = 0.34
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 204 gctggccgaacgcggcattt 223
|||||| |||||||||||||
Sbjct: 163 gctggcggaacgcggcattt 182
>ISGbr1
Length = 1645
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 203 cgctggccgaacgcg 217
|||||||||||||||
Sbjct: 208 cgctggccgaacgcg 222
>ISRel26
Length = 1634
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 204 gctggccgaacgcg 217
||||||||||||||
Sbjct: 372 gctggccgaacgcg 385
>ISSoc10
Length = 1829
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 125 aggactgcattcaa 138
||||||||||||||
Sbjct: 974 aggactgcattcaa 987
>ISMyma9
Length = 2162
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 105 gggcctgaacaagc 118
||||||||||||||
Sbjct: 721 gggcctgaacaagc 708
>ISGsi1
Length = 1310
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 179 tcatcgcccgcacc 192
||||||||||||||
Sbjct: 296 tcatcgcccgcacc 309
>ISCre2
Length = 1411
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 204 gctggccgaacgcg 217
||||||||||||||
Sbjct: 662 gctggccgaacgcg 675
>ISPfe2
Length = 1884
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 180 catcgcccgcacca 193
||||||||||||||
Sbjct: 500 catcgcccgcacca 487
>ISRel16
Length = 2597
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 99 tgccatgggcctga 112
||||||||||||||
Sbjct: 1765 tgccatgggcctga 1778
>ISGeob1
Length = 1020
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 207 ggccgaacgcggca 220
||||||||||||||
Sbjct: 849 ggccgaacgcggca 862
>ISAmi1
Length = 883
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 206 tggccgaacgcggc 219
||||||||||||||
Sbjct: 146 tggccgaacgcggc 159
>ISStpr1
Length = 1052
Score = 28.2 bits (14), Expect = 5.4
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 225 ctccgagtgcgatgtggc 242
||||||||||| ||||||
Sbjct: 1007 ctccgagtgcggtgtggc 990
>ISAfe2
Length = 1124
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 133 attcaattcggcac 146
||||||||||||||
Sbjct: 331 attcaattcggcac 344
>ISPpr11
Length = 1238
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 195 acttctctcgctgg 208
||||||||||||||
Sbjct: 833 acttctctcgctgg 846
>IS866
Length = 2716
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 180 catcgcccgcacca 193
||||||||||||||
Sbjct: 540 catcgcccgcacca 527
>IS408
Length = 2798
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 204 gctggccgaacgcg 217
||||||||||||||
Sbjct: 2204 gctggccgaacgcg 2191
>IS2020
Length = 815
Score = 28.2 bits (14), Expect = 5.4
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 205 ctggccgaacgcggcatt 222
||||| ||||||||||||
Sbjct: 181 ctggctgaacgcggcatt 198
>IS1246
Length = 1275
Score = 28.2 bits (14), Expect = 5.4
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 172 cacgggttcatcgcccgc 189
||||| ||||||||||||
Sbjct: 483 cacggattcatcgcccgc 500
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_156_length_273_cov_0.882653_ID_5482
(273 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISMno23 | IS91 | Methylobacterium nodulans | 32 | 0.34 | |
| ISAli9 | IS5 | IS427 | Azospirillum lipoferum | 32 | 0.34 |
| ISXc4 | Tn3 | - | Xanthomonas campestris | 32 | 0.34 |
| ISNpe31 | IS200/IS605 | IS1341 | Natrinema pellirubrum | 30 | 1.4 |
| ISPko2 | IS256 | Paracoccus kondratievae | 30 | 1.4 | |
| ISTni2 | IS481 | Thioalkalivibrio nitratireducens | 30 | 1.4 | |
| ISRssp10 | IS5 | Roseovarius sp. | 30 | 1.4 | |
| ISStau6 | ISAzo13 | Stigmatella aurantiaca | 30 | 1.4 | |
| ISPfr18 | ISL3 | Propionibacterium freudenreichii | 30 | 1.4 | |
| ISThsp9 | Tn3 | Thiomonas sp. | 30 | 1.4 | |
| ISRtr2 | IS3 | IS51 | Rhizobium tropici | 30 | 1.4 |
| ISMav1 | IS21 | - | Mycobacterium avium | 30 | 1.4 |
| IS868 | IS3 | IS51 | Agrobacterium tumefaciens | 30 | 1.4 |
| IS1631 | IS21 | - | Bradyrhizobium japonicum | 30 | 1.4 |
| IS1162 | IS21 | - | Pseudomonas fluorescens | 30 | 1.4 |
| ISTsu1 | IS256 | Thermaerobacter subterraneus | 28 | 5.4 | |
| TnXo19 | Tn3 | Xanthomonas oryzae | 28 | 5.4 | |
| TnAs3 | Tn3 | Aeromonas salmonicida | 28 | 5.4 | |
| ISAba28 | IS66 | Acinetobacter baumannii | 28 | 5.4 | |
| ISKpn24 | IS66 | Klebsiella pneumoniae | 28 | 5.4 | |
| ISTni1 | ISKra4 | ISKra4 | Thioalkalivibrio nitratireducens | 28 | 5.4 |
| ISMrh1 | IS256 | Mycobacterium rhodesiae | 28 | 5.4 | |
| ISPa38 | Tn3 | Pseudomonas aeruginosa | 28 | 5.4 | |
| ISAzs34 | ISNCY | IS892 | Azospirillum sp. | 28 | 5.4 |
| ISRel9 | IS110 | IS1111 | Rhizobium etli | 28 | 5.4 |
| ISRhosp9 | IS5 | ISL2 | Rhodococcus sp. | 28 | 5.4 |
| ISFsp2 | IS5 | ISL2 | Frankia sp. | 28 | 5.4 |
| ISMtsp19 | IS701 | Methylobacterium sp. | 28 | 5.4 | |
| ISMno6 | IS6 | Methylobacterium nodulans | 28 | 5.4 | |
| ISPfr8 | ISL3 | Propionibacterium freudenreichii | 28 | 5.4 | |
| ISAar41 | IS110 | Arthrobacter arilaitensis | 28 | 5.4 | |
| ISAar30 | ISL3 | Arthrobacter arilaitensis | 28 | 5.4 | |
| ISMdi27 | IS21 | Methylobacterium dichloromethanicum | 28 | 5.4 | |
| ISMdi26 | IS5 | IS1031 | Methylobacterium dichloromethanicum | 28 | 5.4 |
| ISMex14 | IS256 | Methylobacterium extorquens | 28 | 5.4 | |
| ISThsp16 | IS1182 | Thiomonas sp. | 28 | 5.4 | |
| ISVei5 | IS5 | IS5 | Verminephrobacter eiseniae | 28 | 5.4 |
| ISCARN17 | IS21 | Metagenomic data from CARNOULES | 28 | 5.4 | |
| ISCARN4 | IS21 | Metagenomic data from CARNOULES | 28 | 5.4 | |
| ISThsp2 | IS21 | Thiomonas sp. | 28 | 5.4 | |
| ISGdi14 | IS3 | IS51 | Gluconacetobacter diazotrophicus | 28 | 5.4 |
| ISTesp3 | IS3 | IS51 | Terrabacter sp. | 28 | 5.4 |
| ISHar2 | IS3 | IS3 | Herminiimonas arsenicoxydans | 28 | 5.4 |
| ISEc22 | IS66 | Escherichia coli | 28 | 5.4 | |
| ISNieu4 | IS5 | IS1031 | Nitrosomonas eutropha | 28 | 5.4 |
| ISVvu3 | IS4 | IS4 | Vibrio vulnificus | 28 | 5.4 |
| IS609 | IS200/IS605 | Escherichia coli | 28 | 5.4 | |
| ISPpu17 | IS30 | Pseudomonas putida | 28 | 5.4 | |
| ISAzo6 | IS1634 | Azoarcus sp. | 28 | 5.4 | |
| ISPpa5 | IS66 | Paracoccus pantotrophus | 28 | 5.4 | |
| ISGsu2 | IS5 | Geobacter sulfurreducens | 28 | 5.4 | |
| ISBlo5 | IS256 | Bifidobacterium longum | 28 | 5.4 | |
| ISRm9 | IS21 | - | Rhizobium meliloti | 28 | 5.4 |
| ISPsy31 | IS3 | IS3 | Pseudomonas syringae | 28 | 5.4 |
| IS481v1 | IS481 | - | Bordetella pertussis | 28 | 5.4 |
| IS481 | IS481 | Bordetella pertussis | 28 | 5.4 | |
| IS1202 | ISNCY | IS1202 | Streptococcus pneumoniae | 28 | 5.4 |
>ISMno23
Length = 2271
Score = 32.2 bits (16), Expect = 0.34
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 12 gctgtcggccgacgag 27
||||||||||||||||
Sbjct: 1906 gctgtcggccgacgag 1921
>ISAli9
Length = 846
Score = 32.2 bits (16), Expect = 0.34
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 115 ccgcaccttgatcgcc 130
||||||||||||||||
Sbjct: 608 ccgcaccttgatcgcc 623
>ISXc4
Length = 6938
Score = 32.2 bits (16), Expect = 0.34
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 78 tgtcgccaacgtgctcgaag 97
|||||||||||| |||||||
Sbjct: 3474 tgtcgccaacgttctcgaag 3455
>ISNpe31
Length = 1667
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 209 acgatgaagaccgcc 223
|||||||||||||||
Sbjct: 571 acgatgaagaccgcc 585
>ISPko2
Length = 1396
Score = 30.2 bits (15), Expect = 1.4
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 185 tcgagcaagaactggccga 203
||||| |||||||||||||
Sbjct: 213 tcgaggaagaactggccga 231
>ISTni2
Length = 3451
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 157 gcgccggtggtggcg 171
|||||||||||||||
Sbjct: 508 gcgccggtggtggcg 522
>ISRssp10
Length = 1364
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 159 gccggtggtggcggt 173
|||||||||||||||
Sbjct: 622 gccggtggtggcggt 608
>ISStau6
Length = 1304
Score = 30.2 bits (15), Expect = 1.4
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 152 agggcgcgccggtggtggc 170
|||||||||||||| ||||
Sbjct: 694 agggcgcgccggtgctggc 712
>ISPfr18
Length = 1437
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 230 tcctggaagacctcg 244
|||||||||||||||
Sbjct: 73 tcctggaagacctcg 59
>ISThsp9
Length = 6215
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 227 ccttcctggaagacc 241
|||||||||||||||
Sbjct: 2030 ccttcctggaagacc 2044
>ISRtr2
Length = 1321
Score = 30.2 bits (15), Expect = 1.4
Identities = 21/23 (91%)
Strand = Plus / Minus
Query: 233 tggaagacctcggccttgaagag 255
|||| ||||||||||||| ||||
Sbjct: 1116 tggatgacctcggccttgtagag 1094
>ISMav1
Length = 2536
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 165 ggtggcggtttgtgc 179
|||||||||||||||
Sbjct: 614 ggtggcggtttgtgc 628
>IS868
Length = 1321
Score = 30.2 bits (15), Expect = 1.4
Identities = 21/23 (91%)
Strand = Plus / Minus
Query: 233 tggaagacctcggccttgaagag 255
|||| ||||||||||||| ||||
Sbjct: 1116 tggatgacctcggccttgtagag 1094
>IS1631
Length = 2712
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 148 ggcgagggcgcgccg 162
|||||||||||||||
Sbjct: 612 ggcgagggcgcgccg 626
>IS1162
Length = 2634
Score = 30.2 bits (15), Expect = 1.4
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 226 gccttcctggaagacctcg 244
|||| ||||||||||||||
Sbjct: 2000 gcctgcctggaagacctcg 2018
>ISTsu1
Length = 1315
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 115 ccgcaccttgatcg 128
||||||||||||||
Sbjct: 567 ccgcaccttgatcg 554
>TnXo19
Length = 18767
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 226 gccttcctggaaga 239
||||||||||||||
Sbjct: 6819 gccttcctggaaga 6832
>TnAs3
Length = 18735
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 234 ggaagacctcggcc 247
||||||||||||||
Sbjct: 10634 ggaagacctcggcc 10647
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 234 ggaagacctcggcc 247
||||||||||||||
Sbjct: 13793 ggaagacctcggcc 13806
>ISAba28
Length = 2740
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 228 cttcctggaagacc 241
||||||||||||||
Sbjct: 2080 cttcctggaagacc 2093
>ISKpn24
Length = 2454
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 39 tcgccagctgtgcc 52
||||||||||||||
Sbjct: 765 tcgccagctgtgcc 752
>ISTni1
Length = 2377
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 29 tcgacctgattcgc 42
||||||||||||||
Sbjct: 2049 tcgacctgattcgc 2036
>ISMrh1
Length = 1472
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 44 agctgtgcctgctg 57
||||||||||||||
Sbjct: 715 agctgtgcctgctg 728
>ISPa38
Length = 6455
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 208 gacgatgaagaccg 221
||||||||||||||
Sbjct: 2662 gacgatgaagaccg 2649
>ISAzs34
Length = 1650
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 154 ggcgcgccggtggt 167
||||||||||||||
Sbjct: 890 ggcgcgccggtggt 903
>ISRel9
Length = 1553
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 212 atgaagaccgcctg 225
||||||||||||||
Sbjct: 1231 atgaagaccgcctg 1244
>ISRhosp9
Length = 944
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 117 gcaccttgatcgcc 130
||||||||||||||
Sbjct: 454 gcaccttgatcgcc 467
>ISFsp2
Length = 1040
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 246 ccttgaagagccgg 259
||||||||||||||
Sbjct: 332 ccttgaagagccgg 319
>ISMtsp19
Length = 1486
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 193 gaactggccgacct 206
||||||||||||||
Sbjct: 901 gaactggccgacct 914
>ISMno6
Length = 816
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 141 cgccgaaggcgagg 154
||||||||||||||
Sbjct: 351 cgccgaaggcgagg 364
>ISPfr8
Length = 1436
Score = 28.2 bits (14), Expect = 5.4
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 231 cctggaagacctcggcct 248
|||||| |||||||||||
Sbjct: 169 cctggatgacctcggcct 186
>ISAar41
Length = 1346
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 20 ccgacgagatcgac 33
||||||||||||||
Sbjct: 588 ccgacgagatcgac 601
>ISAar30
Length = 1435
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 234 ggaagacctcggcc 247
||||||||||||||
Sbjct: 79 ggaagacctcggcc 66
>ISMdi27
Length = 2476
Score = 28.2 bits (14), Expect = 5.4
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 137 cactcgccgaaggcgagg 154
||||| ||||||||||||
Sbjct: 2216 cactccccgaaggcgagg 2199
>ISMdi26
Length = 859
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 11 ggctgtcggccgac 24
||||||||||||||
Sbjct: 266 ggctgtcggccgac 279
>ISMex14
Length = 1381
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 6 catggggctgtcgg 19
||||||||||||||
Sbjct: 481 catggggctgtcgg 494
>ISThsp16
Length = 1602
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 178 gccaagatcgagca 191
||||||||||||||
Sbjct: 705 gccaagatcgagca 718
>ISVei5
Length = 1620
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 59 cgatcaagccggcc 72
||||||||||||||
Sbjct: 595 cgatcaagccggcc 608
>ISCARN17
Length = 2539
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 148 ggcgagggcgcgcc 161
||||||||||||||
Sbjct: 584 ggcgagggcgcgcc 597
>ISCARN4
Length = 2599
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 159 gccggtggtggcgg 172
||||||||||||||
Sbjct: 399 gccggtggtggcgg 386
>ISThsp2
Length = 2644
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 137 cactcgccgaaggc 150
||||||||||||||
Sbjct: 2242 cactcgccgaaggc 2229
>ISGdi14
Length = 1318
Score = 28.2 bits (14), Expect = 5.4
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 238 gacctcggccttgaagag 255
||||||||||||| ||||
Sbjct: 1108 gacctcggccttgtagag 1091
>ISTesp3
Length = 1373
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 14 tgtcggccgacgag 27
||||||||||||||
Sbjct: 1131 tgtcggccgacgag 1118
>ISHar2
Length = 1249
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 82 gccaacgtgctcga 95
||||||||||||||
Sbjct: 695 gccaacgtgctcga 708
>ISEc22
Length = 2454
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 39 tcgccagctgtgcc 52
||||||||||||||
Sbjct: 765 tcgccagctgtgcc 752
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 42 ccagctgtgcctgc 55
||||||||||||||
Sbjct: 1011 ccagctgtgcctgc 998
>ISNieu4
Length = 842
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 222 cctggccttcctgg 235
||||||||||||||
Sbjct: 798 cctggccttcctgg 811
>ISVvu3
Length = 1430
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 205 ctggacgatgaaga 218
||||||||||||||
Sbjct: 606 ctggacgatgaaga 593
>IS609
Length = 1748
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 21 cgacgagatcgacc 34
||||||||||||||
Sbjct: 198 cgacgagatcgacc 185
>ISPpu17
Length = 1066
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 155 gcgcgccggtggtg 168
||||||||||||||
Sbjct: 462 gcgcgccggtggtg 475
>ISAzo6
Length = 1925
Score = 28.2 bits (14), Expect = 5.4
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 234 ggaagacctcggccttga 251
|||||| |||||||||||
Sbjct: 1406 ggaagagctcggccttga 1389
>ISPpa5
Length = 2829
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 97 gatggctttgagaa 110
||||||||||||||
Sbjct: 2598 gatggctttgagaa 2585
>ISGsu2
Length = 1319
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 159 gccggtggtggcgg 172
||||||||||||||
Sbjct: 586 gccggtggtggcgg 599
>ISBlo5
Length = 1366
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 18 ggccgacgagatcg 31
||||||||||||||
Sbjct: 235 ggccgacgagatcg 248
>ISRm9
Length = 2798
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 6 catggggctgtcgg 19
||||||||||||||
Sbjct: 583 catggggctgtcgg 596
>ISPsy31
Length = 1667
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 24 cgagatcgacctga 37
||||||||||||||
Sbjct: 310 cgagatcgacctga 323
>IS481v1
Length = 1043
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 196 ctggccgacctgga 209
||||||||||||||
Sbjct: 440 ctggccgacctgga 453
>IS481
Length = 1043
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 196 ctggccgacctgga 209
||||||||||||||
Sbjct: 440 ctggccgacctgga 453
>IS1202
Length = 1747
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 228 cttcctggaagacc 241
||||||||||||||
Sbjct: 534 cttcctggaagacc 547
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_157_length_272_cov_0.748718_ID_5484
(272 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| IS1631 | IS21 | - | Bradyrhizobium japonicum | 32 | 0.34 |
| TnAs3 | Tn3 | Aeromonas salmonicida | 30 | 1.4 | |
| ISHaca1 | IS200/IS605 | IS605 | Haloarcula californiae | 30 | 1.4 |
| ISHma16 | IS200/IS605 | IS1341 | Haloarcula marismortui | 30 | 1.4 |
| ISHwa17 | IS200/IS605 | Haloquadratum walsbyi | 30 | 1.4 | |
| ISAzs18 | IS66 | Azospirillum sp. | 30 | 1.4 | |
| ISNph7 | IS200/IS605 | Natronomonas pharaonis | 30 | 1.4 | |
| ISMamg2 | IS3 | IS407 | Magnetospirillum magneticum | 30 | 1.4 |
| ISStma11 | ISL3 | Stenotrophomonas maltophilia | 30 | 1.4 | |
| ISRm2 | IS66 | Sinorhizobium meliloti | 30 | 1.4 | |
| ISNme1 | IS5 | - | Neisseria meningitidis BZ198 | 30 | 1.4 |
| IS1106 | IS5 | IS5 | Neisseria meningitidis | 30 | 1.4 |
| ISMaq7 | IS256 | Marinobacter aquaeolei | 28 | 5.4 | |
| ISAs24 | IS110 | IS1111 | Aeromonas salmonicida | 28 | 5.4 |
| ISHvo17 | IS200/IS605 | IS1341 | Haloferax volcanii | 28 | 5.4 |
| ISCot1 | ISKra4 | ISAzba1 | Candidatus Odyssella thessalonicensis | 28 | 5.4 |
| ISAzs2 | IS21 | Azospirillum sp. | 28 | 5.4 | |
| ISBmu30 | IS66 | Burkholderia multivorans | 28 | 5.4 | |
| ISXac4 | IS3 | IS407 | Xanthomonas axonopodis | 28 | 5.4 |
| ISShsp2 | IS1182 | Sphingomonas sp. | 28 | 5.4 | |
| ISThsp12 | IS1634 | Thiomonas sp. | 28 | 5.4 | |
| ISSst2 | IS1595 | ISNha5 | Sagittula stellata | 28 | 5.4 |
| ISNha5 | IS1595 | ISNha5 | Nitrobacter hamburgensis | 28 | 5.4 |
| ISMsm7 | IS3 | IS3 | Mycobacterium smegmatis | 28 | 5.4 |
| ISMca7 | IS5 | IS5 | Methylococcus capsulatus | 28 | 5.4 |
| ISXo16 | IS1595 | IS1595 | Xanthomonas oryzae | 28 | 5.4 |
| ISvPBCV_1 | IS607 | Virus PBCV1 | 28 | 5.4 | |
| ISLxx2 | IS110 | Leifsonia xyli | 28 | 5.4 | |
| IST2 | IS256 | - | Thiobacillus ferrooxidans | 28 | 5.4 |
| ISRso14 | IS3 | IS407 | Ralstonia solanacearum | 28 | 5.4 |
| ISH5 | IS4 | ISH8 | Halobacterium sp. | 28 | 5.4 |
>IS1631
Length = 2712
Score = 32.2 bits (16), Expect = 0.34
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 57 acaaccgctcgacggt 72
||||||||||||||||
Sbjct: 1599 acaaccgctcgacggt 1584
>TnAs3
Length = 18735
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 130 cgccacggcctcggc 144
|||||||||||||||
Sbjct: 5902 cgccacggcctcggc 5888
>ISHaca1
Length = 1964
Score = 30.2 bits (15), Expect = 1.4
Identities = 21/23 (91%)
Strand = Plus / Plus
Query: 210 ggcaggcatcggcgcctgcggac 232
|||||||||||| ||||| ||||
Sbjct: 1833 ggcaggcatcggggcctgtggac 1855
>ISHma16
Length = 1526
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 230 gacttggcgttctcg 244
|||||||||||||||
Sbjct: 1078 gacttggcgttctcg 1064
>ISHwa17
Length = 2033
Score = 30.2 bits (15), Expect = 1.4
Identities = 21/23 (91%)
Strand = Plus / Plus
Query: 210 ggcaggcatcggcgcctgcggac 232
|||||||||||| ||||| ||||
Sbjct: 1899 ggcaggcatcggggcctgtggac 1921
>ISAzs18
Length = 2633
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 214 ggcatcggcgcctgc 228
|||||||||||||||
Sbjct: 1529 ggcatcggcgcctgc 1515
>ISNph7
Length = 2020
Score = 30.2 bits (15), Expect = 1.4
Identities = 21/23 (91%)
Strand = Plus / Plus
Query: 210 ggcaggcatcggcgcctgcggac 232
|||||||||||| ||||| ||||
Sbjct: 1886 ggcaggcatcggggcctgtggac 1908
>ISMamg2
Length = 1486
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 244 ggtcagctcgacggc 258
|||||||||||||||
Sbjct: 1081 ggtcagctcgacggc 1095
>ISStma11
Length = 4621
Score = 30.2 bits (15), Expect = 1.4
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 247 cagctcgacggcttcgctg 265
||||||| |||||||||||
Sbjct: 4251 cagctcggcggcttcgctg 4233
>ISRm2
Length = 2593
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 128 atcgccacggcctcg 142
|||||||||||||||
Sbjct: 1494 atcgccacggcctcg 1508
>ISNme1
Length = 1221
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 142 ggcgatgtgtttgaa 156
|||||||||||||||
Sbjct: 1012 ggcgatgtgtttgaa 1026
>IS1106
Length = 1137
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 142 ggcgatgtgtttgaa 156
|||||||||||||||
Sbjct: 890 ggcgatgtgtttgaa 904
>ISMaq7
Length = 1379
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 201 tcaccagcaggcag 214
||||||||||||||
Sbjct: 674 tcaccagcaggcag 661
>ISAs24
Length = 1394
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 139 ctcggcgatgtgtt 152
||||||||||||||
Sbjct: 1128 ctcggcgatgtgtt 1115
>ISHvo17
Length = 1508
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 3 cgcgcttgaggtcg 16
||||||||||||||
Sbjct: 305 cgcgcttgaggtcg 292
>ISCot1
Length = 2802
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 44 ttggatatcttgga 57
||||||||||||||
Sbjct: 2406 ttggatatcttgga 2419
>ISAzs2
Length = 2609
Score = 28.2 bits (14), Expect = 5.4
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 205 cagcaggcaggcatcggc 222
|||| |||||||||||||
Sbjct: 278 cagccggcaggcatcggc 261
>ISBmu30
Length = 2344
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 3 cgcgcttgaggtcg 16
||||||||||||||
Sbjct: 549 cgcgcttgaggtcg 536
>ISXac4
Length = 1202
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 232 cttggcgttctcgg 245
||||||||||||||
Sbjct: 269 cttggcgttctcgg 256
>ISShsp2
Length = 1526
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 252 cgacggcttcgctg 265
||||||||||||||
Sbjct: 497 cgacggcttcgctg 510
>ISThsp12
Length = 2004
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 136 ggcctcggcgatgt 149
||||||||||||||
Sbjct: 911 ggcctcggcgatgt 898
>ISSst2
Length = 3454
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 211 gcaggcatcggcgc 224
||||||||||||||
Sbjct: 2189 gcaggcatcggcgc 2176
>ISNha5
Length = 3904
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 130 cgccacggcctcgg 143
||||||||||||||
Sbjct: 1769 cgccacggcctcgg 1782
>ISMsm7
Length = 1280
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 218 tcggcgcctgcgga 231
||||||||||||||
Sbjct: 1013 tcggcgcctgcgga 1026
>ISMca7
Length = 1172
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 125 ggaatcgccacggc 138
||||||||||||||
Sbjct: 1064 ggaatcgccacggc 1077
>ISXo16
Length = 1072
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 66 cgacggtatctggc 79
||||||||||||||
Sbjct: 911 cgacggtatctggc 924
>ISvPBCV_1
Length = 1436
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 71 gtatctggcagcat 84
||||||||||||||
Sbjct: 238 gtatctggcagcat 225
>ISLxx2
Length = 1427
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 142 ggcgatgtgtttga 155
||||||||||||||
Sbjct: 1371 ggcgatgtgtttga 1358
>IST2
Length = 1408
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 201 tcaccagcaggcag 214
||||||||||||||
Sbjct: 679 tcaccagcaggcag 666
>ISRso14
Length = 1234
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 232 cttggcgttctcgg 245
||||||||||||||
Sbjct: 975 cttggcgttctcgg 988
>ISH5
Length = 1442
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 225 ctgcggacttggcg 238
||||||||||||||
Sbjct: 764 ctgcggacttggcg 777
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_158_length_272_cov_0.748718_ID_5486
(272 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISBusp4 | IS1182 | Burkholderia sp. | 38 | 0.006 | |
| ISHla17 | IS200/IS605 | Halorubrum lacusprofundi | 30 | 1.4 | |
| ISAzs37 | IS630 | Azospirillum sp. | 30 | 1.4 | |
| ISAzs28 | IS5 | IS1031 | Azospirillum sp. | 30 | 1.4 |
| ISGau7 | IS21 | Gemmatimonas aurantiaca | 30 | 1.4 | |
| ISMaq6 | IS5 | IS5 | Marinobacter aquaeolei | 30 | 1.4 |
| ISAar39 | ISL3 | Arthrobacter arilaitensis | 30 | 1.4 | |
| ISMex11 | IS3 | IS407 | Methylobacterium extorquens | 30 | 1.4 |
| ISSpu5 | IS21 | Shewanella putrefaciens | 30 | 1.4 | |
| ISBcen14 | IS66 | Burkholderia cenocepacia | 30 | 1.4 | |
| ISPpu4 | IS3 | IS3 | Pseudomonas putida | 30 | 1.4 |
| IS1491 | IS21 | - | Pseudomonas alcaligenes | 30 | 1.4 |
| IS1326 | IS21 | - | Pseudomonas aeruginosa | 30 | 1.4 |
| TnXo19 | Tn3 | Xanthomonas oryzae | 28 | 5.4 | |
| ISHala3 | IS200/IS605 | IS1341 | Halobiforma lacisalsi | 28 | 5.4 |
| ISStu2 | ISAzo13 | Streptomyces turgidiscabies | 28 | 5.4 | |
| ISTni1 | ISKra4 | ISKra4 | Thioalkalivibrio nitratireducens | 28 | 5.4 |
| ISAzs36 | IS481 | Azospirillum sp. | 28 | 5.4 | |
| ISRel6 | IS630 | Rhizobium etli | 28 | 5.4 | |
| ISNph20 | IS200/IS605 | IS1341 | Natronomonas pharaonis | 28 | 5.4 |
| ISPfr8 | ISL3 | Propionibacterium freudenreichii | 28 | 5.4 | |
| ISMch7 | IS701 | Methylobacterium chloromethanicum | 28 | 5.4 | |
| ISBps2 | IS3 | IS3 | Burkholderia pseudomallei | 28 | 5.4 |
| ISThsp17 | IS1595 | ISPna2 | Thiomonas sp. | 28 | 5.4 |
| ISApr6 | IS66 | Alpha proteobacterium | 28 | 5.4 | |
| ISMsm2 | IS630 | Mycobacterium smegmatis | 28 | 5.4 | |
| ISGur6 | IS3 | IS3 | Geobacter uraniireducens | 28 | 5.4 |
| ISMyma6 | IS481 | - | Mycobacterium marinum | 28 | 5.4 |
| ISRtr2 | IS3 | IS51 | Rhizobium tropici | 28 | 5.4 |
| ISAzo5 | IS4 | IS50 | Azoarcus sp. | 28 | 5.4 |
| ISXfu2 | IS5 | IS5 | Xanthomonas fuscans | 28 | 5.4 |
>ISBusp4
Length = 1633
Score = 38.2 bits (19), Expect = 0.006
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 230 acgatccggcgcagcaccg 248
|||||||||||||||||||
Sbjct: 1315 acgatccggcgcagcaccg 1333
>ISHla17
Length = 1885
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 1 gcgtctcgaaattcc 15
|||||||||||||||
Sbjct: 928 gcgtctcgaaattcc 942
>ISAzs37
Length = 1058
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 153 cggacgccggcgacc 167
|||||||||||||||
Sbjct: 825 cggacgccggcgacc 811
>ISAzs28
Length = 1055
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 230 acgatccggcgcagc 244
|||||||||||||||
Sbjct: 355 acgatccggcgcagc 341
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 231 cgatccggcgcagc 244
||||||||||||||
Sbjct: 816 cgatccggcgcagc 803
>ISGau7
Length = 2510
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 157 cgccggcgaccgacg 171
|||||||||||||||
Sbjct: 527 cgccggcgaccgacg 513
>ISMaq6
Length = 1519
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 233 atccggcgcagcacc 247
|||||||||||||||
Sbjct: 768 atccggcgcagcacc 754
>ISAar39
Length = 1433
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 165 accgacgcgcccacc 179
|||||||||||||||
Sbjct: 52 accgacgcgcccacc 38
>ISMex11
Length = 1227
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 233 atccggcgcagcacc 247
|||||||||||||||
Sbjct: 171 atccggcgcagcacc 157
>ISSpu5
Length = 2556
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 137 ctgccaggcccggta 151
|||||||||||||||
Sbjct: 543 ctgccaggcccggta 529
>ISBcen14
Length = 2516
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 161 ggcgaccgacgcgcc 175
|||||||||||||||
Sbjct: 215 ggcgaccgacgcgcc 201
>ISPpu4
Length = 1663
Score = 30.2 bits (15), Expect = 1.4
Identities = 21/23 (91%)
Strand = Plus / Plus
Query: 100 catccaccccgatggtcgggtgc 122
||||||| ||| |||||||||||
Sbjct: 1525 catccacaccgctggtcgggtgc 1547
>IS1491
Length = 2481
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 137 ctgccaggcccggta 151
|||||||||||||||
Sbjct: 488 ctgccaggcccggta 474
>IS1326
Length = 2470
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 190 gctgaagtggcagag 204
|||||||||||||||
Sbjct: 1756 gctgaagtggcagag 1770
>TnXo19
Length = 18767
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 152 acggacgccggcga 165
||||||||||||||
Sbjct: 5583 acggacgccggcga 5570
>ISHala3
Length = 1468
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 94 gcggcccatccacc 107
||||||||||||||
Sbjct: 1346 gcggcccatccacc 1333
>ISStu2
Length = 1760
Score = 28.2 bits (14), Expect = 5.4
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 243 gcaccgcgcaccctcacc 260
|||||| |||||||||||
Sbjct: 1250 gcaccgtgcaccctcacc 1267
>ISTni1
Length = 2377
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 229 aacgatccggcgca 242
||||||||||||||
Sbjct: 1249 aacgatccggcgca 1262
>ISAzs36
Length = 2622
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 155 gacgccggcgaccg 168
||||||||||||||
Sbjct: 1792 gacgccggcgaccg 1779
>ISRel6
Length = 1047
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 248 gcgcaccctcacct 261
||||||||||||||
Sbjct: 629 gcgcaccctcacct 642
>ISNph20
Length = 1624
Score = 28.2 bits (14), Expect = 5.4
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 179 catgccggtaggctgaag 196
|||| |||||||||||||
Sbjct: 602 catgacggtaggctgaag 585
>ISPfr8
Length = 1436
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 19 caccgggatggatc 32
||||||||||||||
Sbjct: 1007 caccgggatggatc 1020
>ISMch7
Length = 1412
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 167 cgacgcgcccacca 180
||||||||||||||
Sbjct: 1346 cgacgcgcccacca 1359
>ISBps2
Length = 1233
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 231 cgatccggcgcagc 244
||||||||||||||
Sbjct: 703 cgatccggcgcagc 716
>ISThsp17
Length = 1044
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 241 cagcaccgcgcacc 254
||||||||||||||
Sbjct: 419 cagcaccgcgcacc 432
>ISApr6
Length = 2479
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 231 cgatccggcgcagc 244
||||||||||||||
Sbjct: 1990 cgatccggcgcagc 1977
>ISMsm2
Length = 1126
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 63 tcgttccaggtgtc 76
||||||||||||||
Sbjct: 1035 tcgttccaggtgtc 1022
>ISGur6
Length = 1667
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 109 cgatggtcgggtgc 122
||||||||||||||
Sbjct: 1533 cgatggtcgggtgc 1546
>ISMyma6
Length = 1072
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 236 cggcgcagcaccgc 249
||||||||||||||
Sbjct: 431 cggcgcagcaccgc 418
>ISRtr2
Length = 1321
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 18 ccaccgggatggat 31
||||||||||||||
Sbjct: 146 ccaccgggatggat 133
>ISAzo5
Length = 1478
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 128 ctgcgacggctgcc 141
||||||||||||||
Sbjct: 1012 ctgcgacggctgcc 1025
>ISXfu2
Length = 1157
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 100 catccaccccgatg 113
||||||||||||||
Sbjct: 612 catccaccccgatg 599
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_159_length_272_cov_0.748718_ID_5488
(272 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISPko1 | IS5 | IS903 | Paracoccus kondratievae | 36 | 0.022 |
| ISSen6 | IS200/IS605 | Salmonella enterica | 32 | 0.34 | |
| ISRusp2 | IS5 | IS903 | Ruegeria sp. | 32 | 0.34 |
| ISSisp2 | IS5 | IS903 | Silicibacter sp. | 32 | 0.34 |
| ISFsp13 | ISAzo13 | Frankia sp. | 32 | 0.34 | |
| IS609 | IS200/IS605 | Escherichia coli | 32 | 0.34 | |
| ISSm4 | ISL3 | Serratia marcescens | 30 | 1.4 | |
| ISAnsp4 | IS21 | Anaeromyxobacter sp. | 30 | 1.4 | |
| ISThsp10 | IS21 | Thiomonas sp. | 30 | 1.4 | |
| ISHne3 | IS110 | Hyphomonas neptunium | 30 | 1.4 | |
| ISGsp3 | ISLre2 | Geobacillus sp. | 30 | 1.4 | |
| IS1676 | IS1380 | - | Rhodococcus erythropolis | 30 | 1.4 |
| ISHvo24 | IS200/IS605 | IS1341 | Haloferax volcanii | 28 | 5.4 |
| ISNpe22 | IS1595 | ISH4 | Natrinema pellirubrum | 28 | 5.4 |
| ISNpe21 | IS1595 | ISH4 | Natrinema pellirubrum | 28 | 5.4 |
| ISNha9 | IS256 | Nitrobacter hamburgensis | 28 | 5.4 | |
| ISArsp3 | IS110 | Arthrobacter sp. | 28 | 5.4 | |
| ISTro1 | IS1380 | Thiocapsa roseopersicina | 28 | 5.4 | |
| ISAzo33 | IS630 | Azoarcus sp. | 28 | 5.4 | |
| ISGNB1-1 | IS5 | IS903 | Uncultured bacterium | 28 | 5.4 |
| ISSpo9 | IS5 | IS903 | Silicibacter pomeroyi | 28 | 5.4 |
| ISRde3 | IS3 | IS407 | Roseobacter denitrificans | 28 | 5.4 |
| ISPsp3 | IS5 | IS5 | Pseudomonas sp. | 28 | 5.4 |
>ISPko1
Length = 1050
Score = 36.2 bits (18), Expect = 0.022
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 154 ccgacttcagcaccctgt 171
||||||||||||||||||
Sbjct: 335 ccgacttcagcaccctgt 352
>ISSen6
Length = 1818
Score = 32.2 bits (16), Expect = 0.34
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 202 acgcgcaacgctggct 217
||||||||||||||||
Sbjct: 1560 acgcgcaacgctggct 1545
>ISRusp2
Length = 1049
Score = 32.2 bits (16), Expect = 0.34
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 156 gacttcagcaccctgt 171
||||||||||||||||
Sbjct: 337 gacttcagcaccctgt 352
>ISSisp2
Length = 1050
Score = 32.2 bits (16), Expect = 0.34
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 154 ccgacttcagcaccct 169
||||||||||||||||
Sbjct: 335 ccgacttcagcaccct 350
>ISFsp13
Length = 1724
Score = 32.2 bits (16), Expect = 0.34
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 140 ggtgcgggtccgcgcc 155
||||||||||||||||
Sbjct: 690 ggtgcgggtccgcgcc 705
>IS609
Length = 1748
Score = 32.2 bits (16), Expect = 0.34
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 202 acgcgcaacgctggct 217
||||||||||||||||
Sbjct: 1502 acgcgcaacgctggct 1487
>ISSm4
Length = 9109
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 163 gcaccctgtatgacc 177
|||||||||||||||
Sbjct: 755 gcaccctgtatgacc 769
>ISAnsp4
Length = 2195
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 12 gaagaggacggcgta 26
|||||||||||||||
Sbjct: 1762 gaagaggacggcgta 1748
>ISThsp10
Length = 2501
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 211 gctggctcaaggccg 225
|||||||||||||||
Sbjct: 305 gctggctcaaggccg 319
>ISHne3
Length = 1172
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 73 ggtacggatttgagc 87
|||||||||||||||
Sbjct: 784 ggtacggatttgagc 770
>ISGsp3
Length = 1709
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 40 ccgatgcgcaaaccg 54
|||||||||||||||
Sbjct: 1270 ccgatgcgcaaaccg 1256
>IS1676
Length = 1693
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 130 tcacctttcaggtgc 144
|||||||||||||||
Sbjct: 112 tcacctttcaggtgc 126
>ISHvo24
Length = 1462
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 29 ccgcgtagtcaccg 42
||||||||||||||
Sbjct: 446 ccgcgtagtcaccg 433
>ISNpe22
Length = 1001
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 81 tttgagcgcttctc 94
||||||||||||||
Sbjct: 951 tttgagcgcttctc 938
>ISNpe21
Length = 1001
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 81 tttgagcgcttctc 94
||||||||||||||
Sbjct: 951 tttgagcgcttctc 938
>ISNha9
Length = 1322
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 145 gggtccgcgccgac 158
||||||||||||||
Sbjct: 626 gggtccgcgccgac 639
>ISArsp3
Length = 1596
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 143 gcgggtccgcgccg 156
||||||||||||||
Sbjct: 1344 gcgggtccgcgccg 1331
>ISTro1
Length = 1735
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 139 aggtgcgggtccgc 152
||||||||||||||
Sbjct: 999 aggtgcgggtccgc 986
>ISAzo33
Length = 1100
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 59 ctggcgcgaaacct 72
||||||||||||||
Sbjct: 956 ctggcgcgaaacct 943
>ISGNB1-1
Length = 1047
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 154 ccgacttcagcacc 167
||||||||||||||
Sbjct: 324 ccgacttcagcacc 337
>ISSpo9
Length = 1049
Score = 28.2 bits (14), Expect = 5.4
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 154 ccgacttcagcaccctgt 171
||||||||||||| ||||
Sbjct: 334 ccgacttcagcacgctgt 351
>ISRde3
Length = 908
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 159 ttcagcaccctgta 172
||||||||||||||
Sbjct: 446 ttcagcaccctgta 433
>ISPsp3
Length = 1190
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 247 cgcccgctatcggc 260
||||||||||||||
Sbjct: 1148 cgcccgctatcggc 1161
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_160_length_272_cov_0.687179_ID_5490
(272 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISGdi14 | IS3 | IS51 | Gluconacetobacter diazotrophicus | 40 | 0.001 |
| ISAzs28 | IS5 | IS1031 | Azospirillum sp. | 34 | 0.087 |
| IS1557 | ISL3 | Mycobacterium tuberculosis | 32 | 0.34 | |
| TnShfr1 | Tn3 | Shewanella frigidimarina | 30 | 1.4 | |
| ISAzs37 | IS630 | Azospirillum sp. | 30 | 1.4 | |
| ISArsp6 | Tn3 | Arthrobacter sp. | 30 | 1.4 | |
| ISMdi27 | IS21 | Methylobacterium dichloromethanicum | 30 | 1.4 | |
| ISGdi3 | IS5 | IS1031 | Gluconacetobacter diazotrophicus | 30 | 1.4 |
| ISGth1 | IS982 | Geobacillus thermodenitrificans | 30 | 1.4 | |
| ISGsp1 | IS982 | Geobacillus sp. | 30 | 1.4 | |
| ISTesp2 | ISL3 | Terrabacter sp. | 30 | 1.4 | |
| ISBs1 | IS982 | - | Bacillus stearothermophilus | 30 | 1.4 |
| ISAs28 | IS21 | Aeromonas salmonicida | 28 | 5.4 | |
| ISAs27 | IS21 | Aeromonas salmonicida | 28 | 5.4 | |
| ISClsp4 | ISLre2 | Clostridium sp. | 28 | 5.4 | |
| ISGpo1 | IS256 | Gordonia polyisoprenivorans | 28 | 5.4 | |
| ISPa43 | Tn3 | Pseudomonas aeruginosa | 28 | 5.4 | |
| ISAzs9 | IS5 | IS427 | Azospirillum sp. | 28 | 5.4 |
| ISBdo1 | IS1182 | Burkholderia dolosa | 28 | 5.4 | |
| ISRle11 | IS1182 | Rhizobium leguminosarum | 28 | 5.4 | |
| ISPfr4 | ISL3 | Propionibacterium freudenreichii | 28 | 5.4 | |
| ISAar33 | IS21 | Arthrobacter arilaitensis | 28 | 5.4 | |
| ISMex21 | IS630 | Methylobacterium extorquens | 28 | 5.4 | |
| ISGob5 | ISAs1 | Gemmata obscuriglobus | 28 | 5.4 | |
| ISCARN56 | IS607 | Metagenomic data from CARNOULES | 28 | 5.4 | |
| ISCARN22 | IS66 | Metagenomic data from CARNOULES | 28 | 5.4 | |
| ISAli9 | IS5 | IS427 | Azospirillum lipoferum | 28 | 5.4 |
| ISRel3 | IS21 | Rhizobium etli | 28 | 5.4 | |
| ISBad2 | IS3 | IS150 | Bifidobacterium adolescentis | 28 | 5.4 |
| ISRhosp1 | IS3 | IS3 | Rhodococcus sp. | 28 | 5.4 |
| ISFal3B | IS5 | IS1031 | Frankia alni | 28 | 5.4 |
| ISFal3A | IS5 | IS1031 | Frankia alni | 28 | 5.4 |
| ISMysp1 | IS110 | Mycobacterium sp. | 28 | 5.4 | |
| ISMva1 | IS1595 | ISSod11 | Mycobacterium vanbaalenii | 28 | 5.4 |
| ISvAR158_1 | IS607 | Virus AR158 | 28 | 5.4 | |
| ISBlo3 | IS3 | Bifidobacterium longum | 28 | 5.4 | |
| IS1600 | IS21 | - | Ralstonia eutropha | 28 | 5.4 |
>ISGdi14
Length = 1318
Score = 40.1 bits (20), Expect = 0.001
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 182 catcgcggcaccagcggcgc 201
||||||||||||||||||||
Sbjct: 213 catcgcggcaccagcggcgc 194
>ISAzs28
Length = 1055
Score = 34.2 bits (17), Expect = 0.087
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 189 gcaccagcggcgcgccg 205
|||||||||||||||||
Sbjct: 720 gcaccagcggcgcgccg 704
>IS1557
Length = 1509
Score = 32.2 bits (16), Expect = 0.34
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 103 ggtgcgccaggcgatc 118
||||||||||||||||
Sbjct: 560 ggtgcgccaggcgatc 545
>TnShfr1
Length = 5131
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 128 tccttcggcttgcgc 142
|||||||||||||||
Sbjct: 1710 tccttcggcttgcgc 1696
>ISAzs37
Length = 1058
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 95 atgccggtggtgcgc 109
|||||||||||||||
Sbjct: 684 atgccggtggtgcgc 670
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 256 gctgctgctcggcg 269
||||||||||||||
Sbjct: 473 gctgctgctcggcg 460
>ISArsp6
Length = 26712
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 255 ggctgctgctcggcg 269
|||||||||||||||
Sbjct: 3713 ggctgctgctcggcg 3699
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 235 cgaactcggcgatc 248
||||||||||||||
Sbjct: 23410 cgaactcggcgatc 23397
>ISMdi27
Length = 2476
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 24 atccggtcgaggtcg 38
|||||||||||||||
Sbjct: 306 atccggtcgaggtcg 292
>ISGdi3
Length = 912
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 191 accagcggcgcgccg 205
|||||||||||||||
Sbjct: 592 accagcggcgcgccg 578
>ISGth1
Length = 1001
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 150 gcaagggctattttt 164
|||||||||||||||
Sbjct: 47 gcaagggctattttt 33
>ISGsp1
Length = 1004
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 150 gcaagggctattttt 164
|||||||||||||||
Sbjct: 47 gcaagggctattttt 33
>ISTesp2
Length = 1397
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 103 ggtgcgccaggcgat 117
|||||||||||||||
Sbjct: 510 ggtgcgccaggcgat 496
>ISBs1
Length = 996
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 150 gcaagggctattttt 164
|||||||||||||||
Sbjct: 47 gcaagggctattttt 33
>ISAs28
Length = 2626
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 128 tccttcggcttgcg 141
||||||||||||||
Sbjct: 983 tccttcggcttgcg 970
>ISAs27
Length = 2628
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 128 tccttcggcttgcg 141
||||||||||||||
Sbjct: 983 tccttcggcttgcg 970
>ISClsp4
Length = 1787
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 113 gcgatcatcgcctc 126
||||||||||||||
Sbjct: 848 gcgatcatcgcctc 835
>ISGpo1
Length = 1432
Score = 28.2 bits (14), Expect = 5.4
Identities = 20/22 (90%)
Strand = Plus / Minus
Query: 181 ccatcgcggcaccagcggcgcg 202
|||||||| ||||||||||||
Sbjct: 1247 ccatcgcgagaccagcggcgcg 1226
>ISPa43
Length = 19903
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 96 tgccggtggtgcgc 109
||||||||||||||
Sbjct: 1206 tgccggtggtgcgc 1219
>ISAzs9
Length = 845
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 40 ctccgccttgctgg 53
||||||||||||||
Sbjct: 565 ctccgccttgctgg 578
>ISBdo1
Length = 1572
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 19 gctcgatccggtcg 32
||||||||||||||
Sbjct: 218 gctcgatccggtcg 231
>ISRle11
Length = 1527
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 27 cggtcgaggtcggc 40
||||||||||||||
Sbjct: 583 cggtcgaggtcggc 570
>ISPfr4
Length = 1415
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 185 cgcggcaccagcgg 198
||||||||||||||
Sbjct: 246 cgcggcaccagcgg 233
>ISAar33
Length = 2628
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 15 gccagctcgatccg 28
||||||||||||||
Sbjct: 1850 gccagctcgatccg 1837
>ISMex21
Length = 1040
Score = 28.2 bits (14), Expect = 5.4
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 92 cacatgccggtggtgcgc 109
|||| |||||||||||||
Sbjct: 651 cacaggccggtggtgcgc 634
>ISGob5
Length = 1308
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 235 cgaactcggcgatc 248
||||||||||||||
Sbjct: 311 cgaactcggcgatc 298
>ISCARN56
Length = 1894
Score = 28.2 bits (14), Expect = 5.4
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 32 gaggtcggctccgccttg 49
||||||||||||| ||||
Sbjct: 338 gaggtcggctccggcttg 355
>ISCARN22
Length = 2674
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 189 gcaccagcggcgcg 202
||||||||||||||
Sbjct: 1175 gcaccagcggcgcg 1188
>ISAli9
Length = 846
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 40 ctccgccttgctgg 53
||||||||||||||
Sbjct: 566 ctccgccttgctgg 579
>ISRel3
Length = 2308
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 95 atgccggtggtgcg 108
||||||||||||||
Sbjct: 2184 atgccggtggtgcg 2171
>ISBad2
Length = 1470
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 184 tcgcggcaccagcg 197
||||||||||||||
Sbjct: 381 tcgcggcaccagcg 368
>ISRhosp1
Length = 1321
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 232 cgccgaactcggcg 245
||||||||||||||
Sbjct: 441 cgccgaactcggcg 428
>ISFal3B
Length = 1130
Score = 28.2 bits (14), Expect = 5.4
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 255 ggctgctgctcggcgtgc 272
||||||||||| ||||||
Sbjct: 523 ggctgctgctcagcgtgc 540
>ISFal3A
Length = 1087
Score = 28.2 bits (14), Expect = 5.4
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 255 ggctgctgctcggcgtgc 272
||||||||||| ||||||
Sbjct: 523 ggctgctgctcagcgtgc 540
>ISMysp1
Length = 1461
Score = 28.2 bits (14), Expect = 5.4
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 168 ccgatccccgcccccatc 185
|||||||||||| |||||
Sbjct: 1333 ccgatccccgccaccatc 1350
>ISMva1
Length = 1093
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 43 cgccttgctggtgg 56
||||||||||||||
Sbjct: 529 cgccttgctggtgg 516
>ISvAR158_1
Length = 1987
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 31 cgaggtcggctccg 44
||||||||||||||
Sbjct: 535 cgaggtcggctccg 522
>ISBlo3
Length = 1480
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 184 tcgcggcaccagcg 197
||||||||||||||
Sbjct: 381 tcgcggcaccagcg 368
>IS1600
Length = 2520
Score = 28.2 bits (14), Expect = 5.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 14 agccagctcgatcc 27
||||||||||||||
Sbjct: 268 agccagctcgatcc 281
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_161_length_271_cov_0.752577_ID_5492
(271 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISAar32 | IS1380 | Arthrobacter arilaitensis | 34 | 0.087 | |
| IS1415 | IS21 | - | Rhodococcus erythropolis | 32 | 0.34 |
| TnXo19 | Tn3 | Xanthomonas oryzae | 30 | 1.4 | |
| TnAs3 | Tn3 | Aeromonas salmonicida | 30 | 1.4 | |
| ISShes11 | Tn3 | Shewanella sp. | 30 | 1.4 | |
| ISPpa7 | IS66 | Paracoccus pantotrophus | 30 | 1.4 | |
| ISMex26 | ISL3 | Methylobacterium extorquens | 30 | 1.4 | |
| ISStma11 | ISL3 | Stenotrophomonas maltophilia | 30 | 1.4 | |
| ISAli20 | Tn3 | Azospirillum lipoferum | 30 | 1.4 | |
| ISMsm4 | ISL3 | Mycobacterium smegmatis | 30 | 1.4 | |
| ISNieu4 | IS5 | IS1031 | Nitrosomonas eutropha | 30 | 1.4 |
| ISAtu2 | IS5 | IS5 | Agrobacterium tumefaciens | 30 | 1.4 |
| ISRso16 | IS3 | IS407 | Ralstonia solanacearum | 30 | 1.4 |
| ISMex45 | IS200/IS605 | IS1341 | Methylobacterium extorquens | 28 | 5.3 |
| ISMex44 | IS200/IS605 | IS1341 | Methylobacterium extorquens | 28 | 5.3 |
| ISNaoc2 | IS200/IS605 | IS1341 | Natronococcus occultus | 28 | 5.3 |
| ISHbo6 | IS200/IS605 | IS1341 | Halogeometricum borinquense | 28 | 5.3 |
| ISHxa1 | IS200/IS605 | IS1341 | Halopiger xanaduensis | 28 | 5.3 |
| ISUnCu7 | ISKra4 | ISAzba1 | Uncultured bacterium | 28 | 5.3 |
| ISPa43 | Tn3 | Pseudomonas aeruginosa | 28 | 5.3 | |
| ISNph7 | IS200/IS605 | Natronomonas pharaonis | 28 | 5.3 | |
| ISPam2 | IS5 | IS903 | Paracoccus aminophilus | 28 | 5.3 |
| ISBlo15 | IS200/IS605 | IS1341 | Bifidobacterium longum | 28 | 5.3 |
| ISArsp6 | Tn3 | Arthrobacter sp. | 28 | 5.3 | |
| ISAar6 | IS256 | Arthrobacter arilaitensis | 28 | 5.3 | |
| ISMex43 | IS200/IS605 | IS1341 | Methylobacterium extorquens | 28 | 5.3 |
| ISStma13 | IS3 | IS407 | Stenotrophomonas maltophilia | 28 | 5.3 |
| ISMex8 | IS21 | Methylobacterium extorquens | 28 | 5.3 | |
| ISAzo26 | IS91 | Azoarcus sp. | 28 | 5.3 | |
| ISAzo14 | IS1634 | Azoarcus sp. | 28 | 5.3 | |
| ISAzca2 | IS66 | Azorhizobium caulinodans | 28 | 5.3 | |
| ISAli5 | IS3 | IS150 | Azospirillum lipoferum | 28 | 5.3 |
| ISMtsp1 | IS6 | Methylobacterium sp. | 28 | 5.3 | |
| ISPla1 | IS1595 | ISPna2 | Parvibaculum lavamentivorans | 28 | 5.3 |
| ISGsp3 | ISLre2 | Geobacillus sp. | 28 | 5.3 | |
| ISRso8 | IS3 | - | Ralstonia solanacearum | 28 | 5.3 |
| IS1511 | IS256 | - | Mycobacterium gordonae | 28 | 5.3 |
| IS298 | IS5 | IS427 | Caulobacter crescentus | 28 | 5.3 |
| IS1137 | IS3 | IS51 | Mycobacterium smegmatis | 28 | 5.3 |
>ISAar32
Length = 1738
Score = 34.2 bits (17), Expect = 0.087
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 185 gcgcaggcgccgggtca 201
|||||||||||||||||
Sbjct: 493 gcgcaggcgccgggtca 477
>IS1415
Length = 2580
Score = 32.2 bits (16), Expect = 0.34
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 140 ctcgatgccgccggcg 155
||||||||||||||||
Sbjct: 293 ctcgatgccgccggcg 278
>TnXo19
Length = 18767
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 191 gcgccgggtcaggcg 205
|||||||||||||||
Sbjct: 16204 gcgccgggtcaggcg 16190
>TnAs3
Length = 18735
Score = 30.2 bits (15), Expect = 1.4
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 35 ctggcggacgcgaatcgcc 53
|||||||||||| ||||||
Sbjct: 16288 ctggcggacgcgcatcgcc 16306
>ISShes11
Length = 7669
Score = 30.2 bits (15), Expect = 1.4
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 35 ctggcggacgcgaatcgcc 53
|||||||||||| ||||||
Sbjct: 5222 ctggcggacgcgcatcgcc 5240
>ISPpa7
Length = 2731
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 244 ccagaccgaaggccg 258
|||||||||||||||
Sbjct: 2078 ccagaccgaaggccg 2092
>ISMex26
Length = 1676
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 179 gccggcgcgcaggcg 193
|||||||||||||||
Sbjct: 1159 gccggcgcgcaggcg 1145
>ISStma11
Length = 4621
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 180 ccggcgcgcaggcgc 194
|||||||||||||||
Sbjct: 3679 ccggcgcgcaggcgc 3693
>ISAli20
Length = 3828
Score = 30.2 bits (15), Expect = 1.4
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 176 ctggccggcgcgcaggcgc 194
||||||| |||||||||||
Sbjct: 2406 ctggccgtcgcgcaggcgc 2388
>ISMsm4
Length = 1458
Score = 30.2 bits (15), Expect = 1.4
Identities = 21/23 (91%)
Strand = Plus / Plus
Query: 175 cctggccggcgcgcaggcgccgg 197
||||||||||| || ||||||||
Sbjct: 564 cctggccggcgagctggcgccgg 586
>ISNieu4
Length = 842
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 85 cttcctggcccttct 99
|||||||||||||||
Sbjct: 804 cttcctggcccttct 818
>ISAtu2
Length = 1353
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 140 ctcgatgccgccggc 154
|||||||||||||||
Sbjct: 466 ctcgatgccgccggc 480
>ISRso16
Length = 1238
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 183 gcgcgcaggcgccgg 197
|||||||||||||||
Sbjct: 753 gcgcgcaggcgccgg 739
>ISMex45
Length = 1270
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 247 gaccgaaggccgtg 260
||||||||||||||
Sbjct: 1202 gaccgaaggccgtg 1189
>ISMex44
Length = 1270
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 247 gaccgaaggccgtg 260
||||||||||||||
Sbjct: 1202 gaccgaaggccgtg 1189
>ISNaoc2
Length = 1458
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 243 accagaccgaaggc 256
||||||||||||||
Sbjct: 844 accagaccgaaggc 857
>ISHbo6
Length = 1456
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 243 accagaccgaaggc 256
||||||||||||||
Sbjct: 842 accagaccgaaggc 855
>ISHxa1
Length = 1457
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 243 accagaccgaaggc 256
||||||||||||||
Sbjct: 843 accagaccgaaggc 856
>ISUnCu7
Length = 2273
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 125 gccgccgaacggcg 138
||||||||||||||
Sbjct: 1030 gccgccgaacggcg 1043
>ISPa43
Length = 19903
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 198 gtcaggcgcagcgc 211
||||||||||||||
Sbjct: 14180 gtcaggcgcagcgc 14167
>ISNph7
Length = 2020
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 239 ggccaccagaccga 252
||||||||||||||
Sbjct: 1939 ggccaccagaccga 1952
>ISPam2
Length = 1054
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 102 cgcccgaagccgga 115
||||||||||||||
Sbjct: 838 cgcccgaagccgga 851
>ISBlo15
Length = 1593
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 162 tcgttgacgaacac 175
||||||||||||||
Sbjct: 750 tcgttgacgaacac 737
>ISArsp6
Length = 26712
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 191 gcgccgggtcaggc 204
||||||||||||||
Sbjct: 8121 gcgccgggtcaggc 8134
Score = 28.2 bits (14), Expect = 5.3
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 137 cgtctcgatgccgccggc 154
||||||||||||| ||||
Sbjct: 13490 cgtctcgatgccgtcggc 13473
>ISAar6
Length = 1519
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 144 atgccgccggcgta 157
||||||||||||||
Sbjct: 511 atgccgccggcgta 498
>ISMex43
Length = 1250
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 198 gtcaggcgcagcgc 211
||||||||||||||
Sbjct: 636 gtcaggcgcagcgc 649
>ISStma13
Length = 1216
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 179 gccggcgcgcaggc 192
||||||||||||||
Sbjct: 339 gccggcgcgcaggc 352
>ISMex8
Length = 2597
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 139 tctcgatgccgccg 152
||||||||||||||
Sbjct: 1177 tctcgatgccgccg 1164
>ISAzo26
Length = 2604
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 125 gccgccgaacggcg 138
||||||||||||||
Sbjct: 1774 gccgccgaacggcg 1761
>ISAzo14
Length = 1925
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 232 acaccccggccacc 245
||||||||||||||
Sbjct: 1775 acaccccggccacc 1762
>ISAzca2
Length = 2458
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 201 aggcgcagcgcacg 214
||||||||||||||
Sbjct: 833 aggcgcagcgcacg 846
>ISAli5
Length = 1266
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 230 gaacaccccggcca 243
||||||||||||||
Sbjct: 234 gaacaccccggcca 221
>ISMtsp1
Length = 893
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 95 cttctcgcgcccga 108
||||||||||||||
Sbjct: 504 cttctcgcgcccga 517
>ISPla1
Length = 1132
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 125 gccgccgaacggcg 138
||||||||||||||
Sbjct: 237 gccgccgaacggcg 224
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 143 gatgccgccggcgt 156
||||||||||||||
Sbjct: 742 gatgccgccggcgt 729
>ISGsp3
Length = 1709
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 254 ggccgtgccgttgg 267
||||||||||||||
Sbjct: 662 ggccgtgccgttgg 649
>ISRso8
Length = 1287
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 181 cggcgcgcaggcgc 194
||||||||||||||
Sbjct: 1001 cggcgcgcaggcgc 1014
>IS1511
Length = 1278
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 238 cggccaccagaccg 251
||||||||||||||
Sbjct: 781 cggccaccagaccg 768
>IS298
Length = 845
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 93 cccttctcgcgccc 106
||||||||||||||
Sbjct: 655 cccttctcgcgccc 668
>IS1137
Length = 1361
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 258 gtgccgttggcgat 271
||||||||||||||
Sbjct: 1304 gtgccgttggcgat 1291
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_162_length_271_cov_0.752577_ID_5494
(271 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| TnXo19 | Tn3 | Xanthomonas oryzae | 34 | 0.087 | |
| ISMno24 | IS91 | Methylobacterium nodulans | 34 | 0.087 | |
| ISXne3 | ISAs1 | Xenorhabdus nematophila | 34 | 0.087 | |
| ISRso6 | IS21 | - | Ralstonia solanacearum | 32 | 0.34 |
| IS1512 | IS256 | - | Mycobacterium gordonae | 32 | 0.34 |
| TnShfr1 | Tn3 | Shewanella frigidimarina | 30 | 1.4 | |
| ISTni1 | ISKra4 | ISKra4 | Thioalkalivibrio nitratireducens | 30 | 1.4 |
| ISPa39 | IS3 | IS407 | Pseudomonas aeruginosa | 30 | 1.4 |
| ISPlma1 | ISNCY | ISDol1 | Planctomyces maris | 30 | 1.4 |
| ISArsp6 | Tn3 | Arthrobacter sp. | 30 | 1.4 | |
| ISMch4 | IS110 | IS1111 | Methylobacterium chloromethanicum | 30 | 1.4 |
| ISMdi5 | IS3 | IS3 | Methylobacterium dichloromethanicum | 30 | 1.4 |
| ISAzo41 | IS5 | IS5 | Azoarcus sp. | 30 | 1.4 |
| ISCARN68 | IS256 | Metagenomic data from CARNOULES | 30 | 1.4 | |
| ISAli13 | IS21 | Azospirillum lipoferum | 30 | 1.4 | |
| ISBmu3 | IS21 | Burkholderia multivorans | 30 | 1.4 | |
| ISPps1 | IS91 | - | Pseudomonas huttiensis | 30 | 1.4 |
| ISTsu1 | IS256 | Thermaerobacter subterraneus | 28 | 5.3 | |
| ISPsy34 | IS66 | Pseudomonas syringae | 28 | 5.3 | |
| ISBf13 | IS4 | IS10 | Bacteroides fragilis | 28 | 5.3 |
| ISPa43 | Tn3 | Pseudomonas aeruginosa | 28 | 5.3 | |
| ISAzs13 | ISL3 | Azospirillum sp. | 28 | 5.3 | |
| ISMlo5 | ISNCY | ISDol1 | Mesorhizobium loti | 28 | 5.3 |
| ISMno35 | IS6 | Methylobacterium nodulans | 28 | 5.3 | |
| ISAar28 | IS481 | Arthrobacter arilaitensis | 28 | 5.3 | |
| ISAar26 | IS3 | IS3 | Arthrobacter arilaitensis | 28 | 5.3 |
| ISGbr1 | IS1380 | Gordonia bronchialis | 28 | 5.3 | |
| ISMav8 | IS1380 | Mycobacterium avium | 28 | 5.3 | |
| ISMdi27 | IS21 | Methylobacterium dichloromethanicum | 28 | 5.3 | |
| ISMex39 | IS21 | Methylobacterium extorquens | 28 | 5.3 | |
| ISAnsp4 | IS21 | Anaeromyxobacter sp. | 28 | 5.3 | |
| ISAzo35 | IS701 | Azoarcus sp. | 28 | 5.3 | |
| ISAzo34 | IS256 | Azoarcus sp. | 28 | 5.3 | |
| ISAisp4 | IS110 | Acidovorax sp. | 28 | 5.3 | |
| ISAzo22 | IS110 | Azoarcus sp. | 28 | 5.3 | |
| ISThsp9 | Tn3 | Thiomonas sp. | 28 | 5.3 | |
| ISAzo11 | IS5 | IS5 | Azoarcus sp. | 28 | 5.3 |
| ISCARN17 | IS21 | Metagenomic data from CARNOULES | 28 | 5.3 | |
| ISAli18 | ISL3 | Azospirillum lipoferum | 28 | 5.3 | |
| ISDge18 | IS200/IS605 | IS1341 | Deinococcus geothermalis | 28 | 5.3 |
| ISLxc3 | IS30 | Leifsonia xyli | 28 | 5.3 | |
| ISXoo4 | IS5 | IS5 | Xanthomonas oryzae | 28 | 5.3 |
| ISRasp1 | IS3 | IS3 | Ralstonia sp. | 28 | 5.3 |
| ISPpa3 | IS5 | IS903 | Paracoccus pantotrophus | 28 | 5.3 |
| ISRsp1 | IS66 | - | Rhizobium sp. | 28 | 5.3 |
| ISRme1 | IS5 | - | Ralstonia metallidurans | 28 | 5.3 |
| ISPa42 | Tn3 | Pseudomonas aeruginosa | 28 | 5.3 | |
| ISMk1 | ISNCY | - | Mycobacterium kansasii | 28 | 5.3 |
| IS630 | IS630 | - | Shigella sonnei | 28 | 5.3 |
| IS1650 | IS5 | IS427 | Streptomyces coelicolor | 28 | 5.3 |
| IS1252 | IS30 | - | Enterococcus sp | 28 | 5.3 |
>TnXo19
Length = 18767
Score = 34.2 bits (17), Expect = 0.087
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 83 ttgatcgccggcgcccgtgcc 103
||||||||||||| |||||||
Sbjct: 5566 ttgatcgccggcgtccgtgcc 5586
>ISMno24
Length = 2157
Score = 34.2 bits (17), Expect = 0.087
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 53 gggatgcgggccatgcggtcg 73
||||||||||||| |||||||
Sbjct: 1819 gggatgcgggccaagcggtcg 1839
>ISXne3
Length = 1214
Score = 34.2 bits (17), Expect = 0.087
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 238 cagcgtgagcaggatgg 254
|||||||||||||||||
Sbjct: 368 cagcgtgagcaggatgg 384
>ISRso6
Length = 2064
Score = 32.2 bits (16), Expect = 0.34
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 253 ggcgaagacgaagggc 268
||||||||||||||||
Sbjct: 764 ggcgaagacgaagggc 779
>IS1512
Length = 1314
Score = 32.2 bits (16), Expect = 0.34
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 143 gtgaaggccagcaggt 158
||||||||||||||||
Sbjct: 1021 gtgaaggccagcaggt 1006
>TnShfr1
Length = 5131
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 195 gcaggccctgaccgg 209
|||||||||||||||
Sbjct: 2316 gcaggccctgaccgg 2302
>ISTni1
Length = 2377
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 49 ctgcgggatgcgggc 63
|||||||||||||||
Sbjct: 1840 ctgcgggatgcgggc 1826
>ISPa39
Length = 1254
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 5 gccaacgcaacgagc 19
|||||||||||||||
Sbjct: 486 gccaacgcaacgagc 472
>ISPlma1
Length = 1790
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 110 tggccggtgaccagg 124
|||||||||||||||
Sbjct: 914 tggccggtgaccagg 900
>ISArsp6
Length = 26712
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 191 gccggcaggccctga 205
|||||||||||||||
Sbjct: 1655 gccggcaggccctga 1669
>ISMch4
Length = 1631
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 218 atggcggcgatcagc 232
|||||||||||||||
Sbjct: 745 atggcggcgatcagc 731
>ISMdi5
Length = 1279
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 249 ggatggcgaagacga 263
|||||||||||||||
Sbjct: 61 ggatggcgaagacga 75
>ISAzo41
Length = 1158
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 64 catgcggtcgagcag 78
|||||||||||||||
Sbjct: 351 catgcggtcgagcag 337
>ISCARN68
Length = 1419
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 138 gcatggtgaaggcca 152
|||||||||||||||
Sbjct: 812 gcatggtgaaggcca 826
>ISAli13
Length = 2756
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 229 cagcacgatcagcgt 243
|||||||||||||||
Sbjct: 1191 cagcacgatcagcgt 1205
>ISBmu3
Length = 2697
Score = 30.2 bits (15), Expect = 1.4
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 58 gcgggccatgcggtcgagc 76
||||||||||| |||||||
Sbjct: 1909 gcgggccatgccgtcgagc 1891
>ISPps1
Length = 1863
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 207 cggtgctgagcatgg 221
|||||||||||||||
Sbjct: 543 cggtgctgagcatgg 557
>ISTsu1
Length = 1315
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 148 ggccagcaggttcc 161
||||||||||||||
Sbjct: 837 ggccagcaggttcc 824
>ISPsy34
Length = 2041
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 25 cagcacgatggcct 38
||||||||||||||
Sbjct: 356 cagcacgatggcct 343
>ISBf13
Length = 1220
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 208 ggtgctgagcatgg 221
||||||||||||||
Sbjct: 410 ggtgctgagcatgg 423
>ISPa43
Length = 19903
Score = 28.2 bits (14), Expect = 5.3
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 217 catggcggcgatcagcac 234
|||| |||||||||||||
Sbjct: 6490 catgacggcgatcagcac 6473
>ISAzs13
Length = 1769
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 179 tgctgcgccatcgc 192
||||||||||||||
Sbjct: 1691 tgctgcgccatcgc 1704
>ISMlo5
Length = 1664
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 190 cgccggcaggccct 203
||||||||||||||
Sbjct: 317 cgccggcaggccct 304
>ISMno35
Length = 894
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 231 gcacgatcagcgtg 244
||||||||||||||
Sbjct: 175 gcacgatcagcgtg 162
>ISAar28
Length = 1593
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 208 ggtgctgagcatgg 221
||||||||||||||
Sbjct: 1394 ggtgctgagcatgg 1407
>ISAar26
Length = 1344
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 123 ggatcagcgacatc 136
||||||||||||||
Sbjct: 785 ggatcagcgacatc 798
>ISGbr1
Length = 1645
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 79 tcggttgatcgccg 92
||||||||||||||
Sbjct: 716 tcggttgatcgccg 729
>ISMav8
Length = 2064
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 84 tgatcgccggcgcc 97
||||||||||||||
Sbjct: 766 tgatcgccggcgcc 753
>ISMdi27
Length = 2476
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 225 cgatcagcacgatc 238
||||||||||||||
Sbjct: 533 cgatcagcacgatc 520
>ISMex39
Length = 2456
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 225 cgatcagcacgatc 238
||||||||||||||
Sbjct: 517 cgatcagcacgatc 504
>ISAnsp4
Length = 2195
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 183 gcgccatcgccggc 196
||||||||||||||
Sbjct: 859 gcgccatcgccggc 872
>ISAzo35
Length = 1451
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 183 gcgccatcgccggc 196
||||||||||||||
Sbjct: 885 gcgccatcgccggc 872
>ISAzo34
Length = 1439
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 73 gagcagtcggttga 86
||||||||||||||
Sbjct: 138 gagcagtcggttga 151
>ISAisp4
Length = 1614
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 210 tgctgagcatggcg 223
||||||||||||||
Sbjct: 1408 tgctgagcatggcg 1395
>ISAzo22
Length = 1763
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 60 gggccatgcggtcg 73
||||||||||||||
Sbjct: 901 gggccatgcggtcg 888
>ISThsp9
Length = 6215
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 63 ccatgcggtcgagc 76
||||||||||||||
Sbjct: 770 ccatgcggtcgagc 783
>ISAzo11
Length = 1280
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 64 catgcggtcgagca 77
||||||||||||||
Sbjct: 349 catgcggtcgagca 336
>ISCARN17
Length = 2539
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 214 gagcatggcggcga 227
||||||||||||||
Sbjct: 1860 gagcatggcggcga 1847
>ISAli18
Length = 1752
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 179 tgctgcgccatcgc 192
||||||||||||||
Sbjct: 1673 tgctgcgccatcgc 1686
>ISDge18
Length = 1388
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 182 tgcgccatcgccgg 195
||||||||||||||
Sbjct: 742 tgcgccatcgccgg 755
>ISLxc3
Length = 1511
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 229 cagcacgatcagcg 242
||||||||||||||
Sbjct: 1015 cagcacgatcagcg 1002
>ISXoo4
Length = 1530
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 80 cggttgatcgccgg 93
||||||||||||||
Sbjct: 320 cggttgatcgccgg 333
>ISRasp1
Length = 1275
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 214 gagcatggcggcga 227
||||||||||||||
Sbjct: 138 gagcatggcggcga 151
>ISPpa3
Length = 1054
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 55 gatgcgggccatgc 68
||||||||||||||
Sbjct: 491 gatgcgggccatgc 478
>ISRsp1
Length = 3481
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 210 tgctgagcatggcg 223
||||||||||||||
Sbjct: 2224 tgctgagcatggcg 2211
>ISRme1
Length = 1331
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 209 gtgctgagcatggc 222
||||||||||||||
Sbjct: 1114 gtgctgagcatggc 1127
>ISPa42
Length = 16941
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 238 cagcgtgagcagga 251
||||||||||||||
Sbjct: 14851 cagcgtgagcagga 14864
>ISMk1
Length = 947
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 181 ctgcgccatcgccg 194
||||||||||||||
Sbjct: 502 ctgcgccatcgccg 489
>IS630
Length = 1153
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 232 cacgatcagcgtga 245
||||||||||||||
Sbjct: 881 cacgatcagcgtga 868
>IS1650
Length = 898
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 54 ggatgcgggccatg 67
||||||||||||||
Sbjct: 546 ggatgcgggccatg 533
>IS1252
Length = 1065
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 6 ccaacgcaacgagc 19
||||||||||||||
Sbjct: 844 ccaacgcaacgagc 857
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_163_length_271_cov_0.752577_ID_5496
(271 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISAar24 | IS3 | IS3 | Arthrobacter arilaitensis | 32 | 0.34 |
| ISShes15 | IS481 | Shewanella sp. | 32 | 0.34 | |
| ISTni1 | ISKra4 | ISKra4 | Thioalkalivibrio nitratireducens | 30 | 1.4 |
| ISEc51 | ISKra4 | ISAzba1 | Escherichia sp | 30 | 1.4 |
| ISThsp19 | IS21 | Thiomonas sp. | 30 | 1.4 | |
| ISTha1 | ISAs1 | Thauera sp. | 30 | 1.4 | |
| ISGdi8 | IS256 | Gluconacetobacter diazotrophicus | 30 | 1.4 | |
| ISXo14 | IS4 | IS10 | Xanthomonas oryzae | 30 | 1.4 |
| ISH20 | ISH3 | Haloarcula marismortui | 30 | 1.4 | |
| ISXa1 | ISAs1 | - | Xanthobacter autotrophicus | 30 | 1.4 |
| ISHti13 | IS4 | ISH8 | Halorhabdus tiamatea | 28 | 5.3 |
| ISNma16 | IS200/IS605 | IS1341 | Natrialba magadii | 28 | 5.3 |
| ISHli12 | IS200/IS605 | IS1341 | Halohasta litchfieldiae | 28 | 5.3 |
| ISMno27 | IS6 | Methylobacterium nodulans | 28 | 5.3 | |
| ISMch5 | IS3 | IS51 | Methylobacterium chloromethanicum | 28 | 5.3 |
| ISCra1 | IS1380 | Cylindrospermopsis raciborskii | 28 | 5.3 | |
| ISCARN88 | IS1182 | Metagenomic data from CARNOULES | 28 | 5.3 | |
| ISLmo1 | IS3 | IS150 | Listeria monocytogenes | 28 | 5.3 |
| ISNpu7 | IS701 | Nostoc punctiforme | 28 | 5.3 | |
| ISRle3 | IS66 | Rhizobium leguminosarum | 28 | 5.3 | |
| ISAba4 | IS982 | Acinetobacter baumannii | 28 | 5.3 | |
| ISBlo11 | IS3 | IS150 | Bifidobacterium longum | 28 | 5.3 |
| ISRl1 | IS66 | - | Rhizobium leguminosarum | 28 | 5.3 |
| ISH5 | IS4 | ISH8 | Halobacterium sp. | 28 | 5.3 |
>ISAar24
Length = 1270
Score = 32.2 bits (16), Expect = 0.34
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 115 ccgcctactgggcgtc 130
||||||||||||||||
Sbjct: 412 ccgcctactgggcgtc 427
>ISShes15
Length = 1200
Score = 32.2 bits (16), Expect = 0.34
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 177 gcaaagtggaacagca 192
||||||||||||||||
Sbjct: 824 gcaaagtggaacagca 839
>ISTni1
Length = 2377
Score = 30.2 bits (15), Expect = 1.4
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 196 gctgcaagcgttcccggcg 214
|||||||||||||| ||||
Sbjct: 662 gctgcaagcgttcctggcg 644
>ISEc51
Length = 2857
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 124 gggcgtcgtcgctga 138
|||||||||||||||
Sbjct: 669 gggcgtcgtcgctga 683
>ISThsp19
Length = 2657
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 132 tcgctgaagctgccg 146
|||||||||||||||
Sbjct: 914 tcgctgaagctgccg 900
>ISTha1
Length = 1301
Score = 30.2 bits (15), Expect = 1.4
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 125 ggcgtcgtcgctgaagctg 143
|||||| ||||||||||||
Sbjct: 1103 ggcgtcctcgctgaagctg 1085
>ISGdi8
Length = 1356
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 246 gttcggcctcccgct 260
|||||||||||||||
Sbjct: 247 gttcggcctcccgct 261
>ISXo14
Length = 1352
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 79 tcccggaaaccacca 93
|||||||||||||||
Sbjct: 505 tcccggaaaccacca 491
>ISH20
Length = 1374
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 84 gaaaccaccagcgat 98
|||||||||||||||
Sbjct: 537 gaaaccaccagcgat 551
>ISXa1
Length = 3041
Score = 30.2 bits (15), Expect = 1.4
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 238 ccatcgcggttcggc 252
|||||||||||||||
Sbjct: 2535 ccatcgcggttcggc 2549
>ISHti13
Length = 1403
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 59 cggtcgttggctat 72
||||||||||||||
Sbjct: 1339 cggtcgttggctat 1326
>ISNma16
Length = 1384
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 129 tcgtcgctgaagct 142
||||||||||||||
Sbjct: 916 tcgtcgctgaagct 929
>ISHli12
Length = 1393
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 198 tgcaagcgttcccg 211
||||||||||||||
Sbjct: 998 tgcaagcgttcccg 985
>ISMno27
Length = 893
Score = 28.2 bits (14), Expect = 5.3
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 1 catggatcatgcgcgagc 18
|||||| |||||||||||
Sbjct: 769 catggaccatgcgcgagc 786
>ISMch5
Length = 1240
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 4 ggatcatgcgcgag 17
||||||||||||||
Sbjct: 603 ggatcatgcgcgag 616
>ISCra1
Length = 1753
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 38 tttgatgatgtgta 51
||||||||||||||
Sbjct: 1064 tttgatgatgtgta 1077
>ISCARN88
Length = 1412
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 176 agcaaagtggaaca 189
||||||||||||||
Sbjct: 684 agcaaagtggaaca 697
>ISLmo1
Length = 1228
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 162 cctactatcagaca 175
||||||||||||||
Sbjct: 679 cctactatcagaca 692
>ISNpu7
Length = 1414
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 37 gtttgatgatgtgt 50
||||||||||||||
Sbjct: 133 gtttgatgatgtgt 146
>ISRle3
Length = 2500
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 232 gggcgaccatcgcg 245
||||||||||||||
Sbjct: 2333 gggcgaccatcgcg 2346
>ISAba4
Length = 975
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 167 tatcagacaagcaa 180
||||||||||||||
Sbjct: 191 tatcagacaagcaa 204
>ISBlo11
Length = 1432
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 4 ggatcatgcgcgag 17
||||||||||||||
Sbjct: 787 ggatcatgcgcgag 800
>ISRl1
Length = 2495
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 232 gggcgaccatcgcg 245
||||||||||||||
Sbjct: 2328 gggcgaccatcgcg 2341
>ISH5
Length = 1442
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 241 tcgcggttcggcct 254
||||||||||||||
Sbjct: 1058 tcgcggttcggcct 1071
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_164_length_270_cov_0.746114_ID_5498
(270 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISAve3 | IS3 | IS2 | Aeromonas veronii | 32 | 0.34 |
| ISAs17 | IS3 | IS2 | Aeromonas salmonicida | 32 | 0.34 |
| ISCku6 | IS66 | ISBst12 | Candidatus Kuenenia stuttgartiensis | 30 | 1.3 |
| TnXo19 | Tn3 | Xanthomonas oryzae | 28 | 5.3 | |
| ISDssp4 | IS1380 | Desulfobacterium sp. | 28 | 5.3 | |
| ISCcl1 | IS256 | Clostridium clariflavum | 28 | 5.3 | |
| ISPa40 | Tn3 | Pseudomonas aeruginosa | 28 | 5.3 | |
| ISShvi3 | IS91 | Shewanella violacea | 28 | 5.3 | |
| IS3514 | IS481 | Corynebacterium jeikeium | 28 | 5.3 | |
| ISBthe3 | IS4 | IS50 | Bacteroides thetaiotaomicron | 28 | 5.3 |
| ISFtu6 | IS1595 | IS1016 | Francisella tularensis | 28 | 5.3 |
>ISAve3
Length = 1333
Score = 32.2 bits (16), Expect = 0.34
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 136 tgtcatgctgaggtct 151
||||||||||||||||
Sbjct: 939 tgtcatgctgaggtct 954
>ISAs17
Length = 1333
Score = 32.2 bits (16), Expect = 0.34
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 136 tgtcatgctgaggtct 151
||||||||||||||||
Sbjct: 939 tgtcatgctgaggtct 954
>ISCku6
Length = 2571
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 39 ttatctgctcttttt 53
|||||||||||||||
Sbjct: 1082 ttatctgctcttttt 1068
>TnXo19
Length = 18767
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 113 tcaaggttctccag 126
||||||||||||||
Sbjct: 13738 tcaaggttctccag 13725
>ISDssp4
Length = 1597
Score = 28.2 bits (14), Expect = 5.3
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 63 catcaacttcaaacttta 80
|||||| |||||||||||
Sbjct: 1248 catcaagttcaaacttta 1265
>ISCcl1
Length = 1581
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 22 gatatcagtcaaca 35
||||||||||||||
Sbjct: 453 gatatcagtcaaca 466
>ISPa40
Length = 6592
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 203 cgtaccagtgcagg 216
||||||||||||||
Sbjct: 1987 cgtaccagtgcagg 2000
>ISShvi3
Length = 2319
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 174 catcctcgttatct 187
||||||||||||||
Sbjct: 669 catcctcgttatct 682
>IS3514
Length = 1427
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 153 tcaccaacgcaggc 166
||||||||||||||
Sbjct: 480 tcaccaacgcaggc 493
>ISBthe3
Length = 1458
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 16 attacagatatcag 29
||||||||||||||
Sbjct: 492 attacagatatcag 505
>ISFtu6
Length = 711
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 74 aactttaccaccag 87
||||||||||||||
Sbjct: 299 aactttaccaccag 286
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_165_length_270_cov_0.746114_ID_5500
(270 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISCARN88 | IS1182 | Metagenomic data from CARNOULES | 38 | 0.006 | |
| ISSba11 | IS21 | Shewanella baltica | 32 | 0.34 | |
| ISDds1 | IS3 | IS3 | Deinococcus deserti | 30 | 1.3 |
| ISRusp1 | IS5 | IS903 | Ruegeria sp. | 30 | 1.3 |
| ISAmde4 | ISLre2 | Ammonifex degensii | 28 | 5.3 | |
| ISMme1 | ISAzo13 | Mesorhizobium metallidurans | 28 | 5.3 | |
| ISAmde2 | ISLre2 | Ammonifex degensii | 28 | 5.3 | |
| ISAzs18 | IS66 | Azospirillum sp. | 28 | 5.3 | |
| ISBthe2 | IS1182 | Bacteroides thetaiotaomicron | 28 | 5.3 | |
| ISMdi12 | IS110 | IS1111 | Methylobacterium dichloromethanicum | 28 | 5.3 |
| ISCARN114 | IS30 | Metagenomic data from CARNOULES | 28 | 5.3 | |
| ISAcma21 | IS1380 | Acaryochloris marina | 28 | 5.3 | |
| ISCmi3 | IS30 | Clavibacter michiganensis | 28 | 5.3 | |
| ISNisp1 | IS3 | IS3 | Nitrobacter sp. | 28 | 5.3 |
| ISHch2 | IS4 | IS4 | Hahella chejuensis | 28 | 5.3 |
| ISAfe1 | IS110 | IS1111 | Acidithiobacillus ferroxidans | 28 | 5.3 |
>ISCARN88
Length = 1412
Score = 38.2 bits (19), Expect = 0.006
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 90 aaataaattcgcttaaata 108
|||||||||||||||||||
Sbjct: 39 aaataaattcgcttaaata 21
>ISSba11
Length = 2394
Score = 32.2 bits (16), Expect = 0.34
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 175 tgcacaccgccacgct 190
||||||||||||||||
Sbjct: 1169 tgcacaccgccacgct 1184
>ISDds1
Length = 1248
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 7 gcgaccgcaaggaag 21
|||||||||||||||
Sbjct: 467 gcgaccgcaaggaag 481
>ISRusp1
Length = 1051
Score = 30.2 bits (15), Expect = 1.3
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 40 tcgatatcgcgtgccatga 58
|||| ||||||||||||||
Sbjct: 910 tcgaaatcgcgtgccatga 892
>ISAmde4
Length = 1584
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 215 gggatcgacctttt 228
||||||||||||||
Sbjct: 196 gggatcgacctttt 209
>ISMme1
Length = 1324
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 35 tgatgtcgatatcg 48
||||||||||||||
Sbjct: 1010 tgatgtcgatatcg 997
>ISAmde2
Length = 1584
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 215 gggatcgacctttt 228
||||||||||||||
Sbjct: 196 gggatcgacctttt 209
>ISAzs18
Length = 2633
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 254 ggtgcccacggaag 267
||||||||||||||
Sbjct: 1945 ggtgcccacggaag 1932
>ISBthe2
Length = 1849
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 160 ctcccgccatgctc 173
||||||||||||||
Sbjct: 704 ctcccgccatgctc 717
>ISMdi12
Length = 1371
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 49 cgtgccatgatctt 62
||||||||||||||
Sbjct: 433 cgtgccatgatctt 446
>ISCARN114
Length = 1063
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 184 ccacgctgtatctg 197
||||||||||||||
Sbjct: 105 ccacgctgtatctg 92
>ISAcma21
Length = 1474
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 77 aattgaacacataa 90
||||||||||||||
Sbjct: 161 aattgaacacataa 148
>ISCmi3
Length = 1459
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 170 gctcatgcacaccg 183
||||||||||||||
Sbjct: 300 gctcatgcacaccg 287
>ISNisp1
Length = 1208
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 208 tgatctggggatcg 221
||||||||||||||
Sbjct: 142 tgatctggggatcg 155
>ISHch2
Length = 1633
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 165 gccatgctcatgca 178
||||||||||||||
Sbjct: 1128 gccatgctcatgca 1141
>ISAfe1
Length = 1424
Score = 28.2 bits (14), Expect = 5.3
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 221 gaccttttttgccatcaa 238
||||| ||||||||||||
Sbjct: 1233 gacctgttttgccatcaa 1216
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_166_length_270_cov_0.756477_ID_5502
(270 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISGvi7 | ISKra4 | ISMich2 | Gloeobacter violaceus | 32 | 0.34 |
| ISArsp6 | Tn3 | Arthrobacter sp. | 32 | 0.34 | |
| ISGrh1 | ISNCY | ISDol1 | Gordonia rhizosphera | 30 | 1.3 |
| ISSiac4 | ISKra4 | ISKra4 | Singulisphaera acidiphila | 30 | 1.3 |
| ISPmar1 | IS6 | Paracoccus marcusii | 30 | 1.3 | |
| ISPeth1 | ISNCY | ISDol1 | Pelotomaculum thermopropionicum | 30 | 1.3 |
| ISMno30 | ISL3 | Methylobacterium nodulans | 30 | 1.3 | |
| ISRso17 | IS701 | - | Ralstonia solanacearum | 30 | 1.3 |
| IS117 | IS110 | - | Streptomyces coelicolor | 30 | 1.3 |
| ISRsp13 | IS5 | Rhizhobium sp. | 28 | 5.3 | |
| ISHwa22 | IS200/IS605 | IS1341 | Haloquadratum walsbyi | 28 | 5.3 |
| ISNma19 | IS200/IS605 | IS1341 | Natrialba magadii | 28 | 5.3 |
| ISNamo20 | IS200/IS605 | IS1341 | Natronomonas moolapensis | 28 | 5.3 |
| ISAzs17 | Tn3 | Azospirillum sp. | 28 | 5.3 | |
| ISAzs6 | IS701 | Azospirillum sp. | 28 | 5.3 | |
| ISRssp11 | IS5 | Roseovarius sp. | 28 | 5.3 | |
| ISPfr6 | ISL3 | Propionibacterium freudenreichii | 28 | 5.3 | |
| IS1677 | IS1380 | Corynebacterium glutamicum | 28 | 5.3 | |
| ISMex24 | ISL3 | Methylobacterium extorquens | 28 | 5.3 | |
| ISAnsp8 | IS3 | IS407 | Anaeromyxobacter sp. | 28 | 5.3 |
| ISAnsp5 | IS21 | Anaeromyxobacter sp. | 28 | 5.3 | |
| ISAnsp4 | IS21 | Anaeromyxobacter sp. | 28 | 5.3 | |
| ISBusp1 | Tn3 | Burkholderia sp. | 28 | 5.3 | |
| ISAzo27 | IS5 | IS5 | Azoarcus sp. | 28 | 5.3 |
| ISSus3 | IS6 | Solibacter usitatus | 28 | 5.3 | |
| ISRhba1 | IS1595 | ISNwi1 | Rhodobacterales bacterium | 28 | 5.3 |
| ISSav2 | IS701 | Streptomyces avermitilis | 28 | 5.3 | |
| ISSco2 | IS481 | Streptomyces coelicolor | 28 | 5.3 | |
| ISRso8 | IS3 | - | Ralstonia solanacearum | 28 | 5.3 |
| IS1536 | IS607 | Mycobacterium tuberculosis | 28 | 5.3 | |
| IS1358 | ISAs1 | - | Vibrio cholerae | 28 | 5.3 |
>ISGvi7
Length = 1220
Score = 32.2 bits (16), Expect = 0.34
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 212 ttgaccgccgactcca 227
||||||||||||||||
Sbjct: 1077 ttgaccgccgactcca 1062
>ISArsp6
Length = 26712
Score = 32.2 bits (16), Expect = 0.34
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 146 ggtgtcaggaagcggc 161
||||||||||||||||
Sbjct: 11231 ggtgtcaggaagcggc 11216
>ISGrh1
Length = 1673
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 215 accgccgactccagc 229
|||||||||||||||
Sbjct: 402 accgccgactccagc 388
>ISSiac4
Length = 1519
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 122 cgcgtcaggtgctgc 136
|||||||||||||||
Sbjct: 303 cgcgtcaggtgctgc 289
>ISPmar1
Length = 821
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 195 aggtctcgtccatgc 209
|||||||||||||||
Sbjct: 321 aggtctcgtccatgc 307
>ISPeth1
Length = 1616
Score = 30.2 bits (15), Expect = 1.3
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 38 tcctgcagtttgagcagca 56
||||| |||||||||||||
Sbjct: 558 tcctgaagtttgagcagca 540
>ISMno30
Length = 1773
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 161 cgcgcctcggcgagc 175
|||||||||||||||
Sbjct: 1551 cgcgcctcggcgagc 1537
>ISRso17
Length = 1471
Score = 30.2 bits (15), Expect = 1.3
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 114 caaggctgcgcgtcaggtg 132
||||||||||| |||||||
Sbjct: 1416 caaggctgcgcatcaggtg 1398
>IS117
Length = 2527
Score = 30.2 bits (15), Expect = 1.3
Identities = 22/23 (95%), Gaps = 1/23 (4%)
Strand = Plus / Plus
Query: 166 ctcggcgagcacctcgggcgccg 188
||||||||||||| |||||||||
Sbjct: 861 ctcggcgagcacc-cgggcgccg 882
>ISRsp13
Length = 1353
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 79 cgggccagcctgct 92
||||||||||||||
Sbjct: 270 cgggccagcctgct 283
>ISHwa22
Length = 1541
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 243 actccacccgtgcc 256
||||||||||||||
Sbjct: 233 actccacccgtgcc 220
>ISNma19
Length = 1576
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 243 actccacccgtgcc 256
||||||||||||||
Sbjct: 283 actccacccgtgcc 270
>ISNamo20
Length = 1536
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 243 actccacccgtgcc 256
||||||||||||||
Sbjct: 237 actccacccgtgcc 224
>ISAzs17
Length = 7252
Score = 28.2 bits (14), Expect = 5.3
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 95 gacgcgctggacagattg 112
|||||||||||| |||||
Sbjct: 4794 gacgcgctggaccgattg 4811
>ISAzs6
Length = 1385
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 213 tgaccgccgactcc 226
||||||||||||||
Sbjct: 667 tgaccgccgactcc 680
>ISRssp11
Length = 1356
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 79 cgggccagcctgct 92
||||||||||||||
Sbjct: 272 cgggccagcctgct 285
>ISPfr6
Length = 1436
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 165 cctcggcgagcacc 178
||||||||||||||
Sbjct: 561 cctcggcgagcacc 548
>IS1677
Length = 1688
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 247 cacccgtgccaccg 260
||||||||||||||
Sbjct: 1332 cacccgtgccaccg 1345
>ISMex24
Length = 1677
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 1 ggtcgccaccgcgg 14
||||||||||||||
Sbjct: 197 ggtcgccaccgcgg 184
>ISAnsp8
Length = 1225
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 161 cgcgcctcggcgag 174
||||||||||||||
Sbjct: 515 cgcgcctcggcgag 502
>ISAnsp5
Length = 2192
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 90 gctcggacgcgctg 103
||||||||||||||
Sbjct: 1714 gctcggacgcgctg 1727
>ISAnsp4
Length = 2195
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 168 cggcgagcacctcg 181
||||||||||||||
Sbjct: 2015 cggcgagcacctcg 2002
>ISBusp1
Length = 3169
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 87 cctgctcggacgcg 100
||||||||||||||
Sbjct: 1772 cctgctcggacgcg 1785
>ISAzo27
Length = 1164
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 47 ttgagcagcaatcc 60
||||||||||||||
Sbjct: 472 ttgagcagcaatcc 459
>ISSus3
Length = 823
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 179 tcgggcgccgcagc 192
||||||||||||||
Sbjct: 266 tcgggcgccgcagc 253
>ISRhba1
Length = 2457
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 156 agcggcgcgcctcg 169
||||||||||||||
Sbjct: 174 agcggcgcgcctcg 161
>ISSav2
Length = 1938
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 64 cagttcgacgagcg 77
||||||||||||||
Sbjct: 490 cagttcgacgagcg 477
>ISSco2
Length = 1964
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 217 cgccgactccagcc 230
||||||||||||||
Sbjct: 424 cgccgactccagcc 411
>ISRso8
Length = 1287
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 82 gccagcctgctcgg 95
||||||||||||||
Sbjct: 1068 gccagcctgctcgg 1081
>IS1536
Length = 1415
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 1 ggtcgccaccgcgg 14
||||||||||||||
Sbjct: 1366 ggtcgccaccgcgg 1379
>IS1358
Length = 1326
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 207 tgcctttgaccgcc 220
||||||||||||||
Sbjct: 768 tgcctttgaccgcc 755
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_167_length_270_cov_0.756477_ID_5504
(270 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| TnAs3 | Tn3 | Aeromonas salmonicida | 30 | 1.3 | |
| ISGeob4 | IS5 | ISL2 | Geodermatophilus obscurus | 30 | 1.3 |
| ISMex4 | IS1380 | Methylobacterium extorquens | 30 | 1.3 | |
| ISAzo35 | IS701 | Azoarcus sp. | 30 | 1.3 | |
| ISMsm3 | IS1380 | Mycobacterium smegmatis | 30 | 1.3 | |
| ISChy2 | IS110 | Carboxydothermus hydrogenoformans | 30 | 1.3 | |
| ISPa42 | Tn3 | Pseudomonas aeruginosa | 30 | 1.3 | |
| IS1245 | IS256 | - | Mycobacterium avium | 30 | 1.3 |
| TnXo19 | Tn3 | Xanthomonas oryzae | 28 | 5.3 | |
| ISPath1 | IS110 | IS1111 | Pandoraea thiooxydans | 28 | 5.3 |
| ISSiac5 | ISLre2 | Singulisphaera acidiphila | 28 | 5.3 | |
| ISGsi1 | IS256 | IS1249 | Gordonia sihwensis | 28 | 5.3 |
| ISMva4 | IS256 | Mycobacterium vanbaalenii | 28 | 5.3 | |
| ISMysp7 | IS256 | Mycobacterium sp. | 28 | 5.3 | |
| ISMgi2 | IS1182 | Mycobacterium gilvum | 28 | 5.3 | |
| ISXac4 | IS3 | IS407 | Xanthomonas axonopodis | 28 | 5.3 |
| ISRsp5 | IS5 | Rhizobium sp. | 28 | 5.3 | |
| ISMra1 | IS3 | IS407 | Methylobacterium radiotolerans | 28 | 5.3 |
| ISMav8 | IS1380 | Mycobacterium avium | 28 | 5.3 | |
| ISMaq3 | IS1380 | Marinobacter aquaeolei | 28 | 5.3 | |
| ISAnsp12 | IS66 | Anaeromyxobacter sp. | 28 | 5.3 | |
| ISMex37 | IS3 | IS150 | Methylobacterium extorquens | 28 | 5.3 |
| ISAnsp4 | IS21 | Anaeromyxobacter sp. | 28 | 5.3 | |
| ISStpr1 | IS481 | Streptomyces pristinaespiralis | 28 | 5.3 | |
| ISThsp3 | IS66 | Thiomonas sp. | 28 | 5.3 | |
| ISApr7 | IS1595 | ISNwi1 | Alpha proteobacterium | 28 | 5.3 |
| ISCARN1 | IS607 | Metagenomic data from CARNOULES | 28 | 5.3 | |
| ISRta2 | IS256 | Ralstonia taiwanensis | 28 | 5.3 | |
| ISMva2 | IS481 | Mycobacterium vanbaalenii | 28 | 5.3 |
>TnAs3
Length = 18735
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 2 cacagggcgagcagc 16
|||||||||||||||
Sbjct: 13301 cacagggcgagcagc 13315
>ISGeob4
Length = 982
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 91 gtagcagcccagcgc 105
|||||||||||||||
Sbjct: 268 gtagcagcccagcgc 254
>ISMex4
Length = 1615
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 107 atcgagcccgccacg 121
|||||||||||||||
Sbjct: 102 atcgagcccgccacg 116
>ISAzo35
Length = 1451
Score = 30.2 bits (15), Expect = 1.3
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 235 aatgcccacgcggtccgcg 253
|||||| ||||||||||||
Sbjct: 324 aatgccgacgcggtccgcg 342
>ISMsm3
Length = 1695
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 114 ccgccacggcgcggg 128
|||||||||||||||
Sbjct: 774 ccgccacggcgcggg 760
>ISChy2
Length = 1708
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 218 taaaaggtcagctcg 232
|||||||||||||||
Sbjct: 892 taaaaggtcagctcg 906
>ISPa42
Length = 16941
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 226 cagctcggcaatgcc 240
|||||||||||||||
Sbjct: 9473 cagctcggcaatgcc 9459
>IS1245
Length = 1414
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 203 ccggccagaccgcgg 217
|||||||||||||||
Sbjct: 792 ccggccagaccgcgg 778
>TnXo19
Length = 18767
Score = 28.2 bits (14), Expect = 5.3
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 188 gccatgaacagcaagccg 205
||||||||||||| ||||
Sbjct: 6233 gccatgaacagcaggccg 6216
Score = 28.2 bits (14), Expect = 5.3
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 249 ccgcgccgagcttgacgc 266
||||||||||| ||||||
Sbjct: 9306 ccgcgccgagcatgacgc 9289
>ISPath1
Length = 1357
Score = 28.2 bits (14), Expect = 5.3
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 238 gcccacgcggtccgcgcc 255
||||||||||| ||||||
Sbjct: 1040 gcccacgcggtgcgcgcc 1023
>ISSiac5
Length = 1429
Score = 28.2 bits (14), Expect = 5.3
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 53 actgccgcggccaacggc 70
|||||||||||| |||||
Sbjct: 799 actgccgcggccgacggc 816
>ISGsi1
Length = 1310
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 246 ggtccgcgccgagc 259
||||||||||||||
Sbjct: 1110 ggtccgcgccgagc 1123
>ISMva4
Length = 1458
Score = 28.2 bits (14), Expect = 5.3
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 249 ccgcgccgagcttgacgc 266
|||||||||||| |||||
Sbjct: 992 ccgcgccgagctcgacgc 1009
>ISMysp7
Length = 1397
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 202 gccggccagaccgc 215
||||||||||||||
Sbjct: 873 gccggccagaccgc 860
>ISMgi2
Length = 1770
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 183 acaccgccatgaac 196
||||||||||||||
Sbjct: 164 acaccgccatgaac 177
>ISXac4
Length = 1202
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 77 ctgatcgcaaaaaa 90
||||||||||||||
Sbjct: 321 ctgatcgcaaaaaa 334
>ISRsp5
Length = 1320
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 72 gcaggctgatcgca 85
||||||||||||||
Sbjct: 1019 gcaggctgatcgca 1006
>ISMra1
Length = 1210
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 246 ggtccgcgccgagc 259
||||||||||||||
Sbjct: 21 ggtccgcgccgagc 34
>ISMav8
Length = 2064
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 117 ccacggcgcgggtg 130
||||||||||||||
Sbjct: 913 ccacggcgcgggtg 900
>ISMaq3
Length = 1560
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 194 aacagcaagccggc 207
||||||||||||||
Sbjct: 194 aacagcaagccggc 181
>ISAnsp12
Length = 2926
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 241 cacgcggtccgcgc 254
||||||||||||||
Sbjct: 628 cacgcggtccgcgc 615
>ISMex37
Length = 1510
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 226 cagctcggcaatgc 239
||||||||||||||
Sbjct: 232 cagctcggcaatgc 219
>ISAnsp4
Length = 2195
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 113 cccgccacggcgcg 126
||||||||||||||
Sbjct: 424 cccgccacggcgcg 411
>ISStpr1
Length = 1052
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 121 ggcgcgggtgagct 134
||||||||||||||
Sbjct: 847 ggcgcgggtgagct 834
>ISThsp3
Length = 2455
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 115 cgccacggcgcggg 128
||||||||||||||
Sbjct: 2075 cgccacggcgcggg 2088
>ISApr7
Length = 3923
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 152 gtgcgaaaaggcgt 165
||||||||||||||
Sbjct: 1682 gtgcgaaaaggcgt 1695
>ISCARN1
Length = 2232
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 115 cgccacggcgcggg 128
||||||||||||||
Sbjct: 311 cgccacggcgcggg 324
>ISRta2
Length = 1386
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 114 ccgccacggcgcgg 127
||||||||||||||
Sbjct: 922 ccgccacggcgcgg 909
>ISMva2
Length = 1966
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 58 cgcggccaacggca 71
||||||||||||||
Sbjct: 1689 cgcggccaacggca 1702
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_168_length_270_cov_0.720207_ID_5506
(270 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISMdi18 | IS1595 | ISNwi1 | Methylobacterium dichloromethanicum | 36 | 0.022 |
| ISMpo2 | IS1595 | ISNwi1 | Methylobacterium populi | 36 | 0.022 |
| ISHoc2 | ISKra4 | ISKra4 | Haliangium ochraceum | 34 | 0.086 |
| ISAzo35 | IS701 | Azoarcus sp. | 34 | 0.086 | |
| ISRle39d | IS6 | - | Rhizobium leguminosarum | 34 | 0.086 |
| ISRle39B | IS6 | - | Rhizobium leguminosarum | 34 | 0.086 |
| ISRle39A | IS6 | - | Rhizobium leguminosarum | 34 | 0.086 |
| ISPebe1 | IS256 | Pelagibaca bermudensis | 30 | 1.3 | |
| ISAcfe2 | IS1182 | Acidimicrobium ferrooxidans | 30 | 1.3 | |
| ISAcfe1 | IS1182 | Acidimicrobium ferrooxidans | 30 | 1.3 | |
| ISPso3 | IS5 | IS5 | Paracoccus solventivorans | 30 | 1.3 |
| ISPmar3 | IS5 | IS5 | Paracoccus marcusii | 30 | 1.3 |
| ISPfr13 | IS3 | IS51 | Propionibacterium freudenreichii | 30 | 1.3 |
| ISPfr4 | ISL3 | Propionibacterium freudenreichii | 30 | 1.3 | |
| ISStma7 | IS110 | Stenotrophomonas maltophilia | 30 | 1.3 | |
| ISMex3 | IS256 | Methylobacterium extorquens | 30 | 1.3 | |
| ISMca6 | ISAs1 | Methylococcus capsulatus | 30 | 1.3 | |
| Tn5403 | Tn3 | Klebsiella pneumoniae | 28 | 5.3 | |
| TnAs3 | Tn3 | Aeromonas salmonicida | 28 | 5.3 | |
| ISMdi15 | IS200/IS605 | IS1341 | Methylobacterium dichloromethanicum | 28 | 5.3 |
| TnAs2 | Tn3 | Aeromonas salmonicida | 28 | 5.3 | |
| ISNml3 | IS1182 | Nakamurella multipartita | 28 | 5.3 | |
| ISVsp8 | IS1380 | Verrucomicrobium spinosum | 28 | 5.3 | |
| ISPpa7 | IS66 | Paracoccus pantotrophus | 28 | 5.3 | |
| ISMno10 | IS1182 | Methylobacterium nodulans | 28 | 5.3 | |
| ISMno8 | IS1182 | Methylobacterium nodulans | 28 | 5.3 | |
| ISArsp6 | Tn3 | Arthrobacter sp. | 28 | 5.3 | |
| ISVsp19 | IS1380 | Verrucomicrobium spinosum | 28 | 5.3 | |
| ISBco2 | IS1380 | Bacillus coagulans | 28 | 5.3 | |
| ISAnsp12 | IS66 | Anaeromyxobacter sp. | 28 | 5.3 | |
| ISMex27 | IS21 | Methylobacterium extorquens | 28 | 5.3 | |
| ISAcma25 | IS630 | Acaryochloris marina | 28 | 5.3 | |
| ISThsp12 | IS1634 | Thiomonas sp. | 28 | 5.3 | |
| ISCARN74 | IS5 | IS5 | Metagenomic data from CARNOULES | 28 | 5.3 |
| ISThsp7 | IS1634 | Thiomonas sp. | 28 | 5.3 | |
| ISThsp4 | IS3 | IS3 | Thiomonas sp. | 28 | 5.3 |
| ISMlu1 | IS256 | Micrococcus luteus | 28 | 5.3 | |
| ISAli3 | IS630 | Azospirillum lipoferum | 28 | 5.3 | |
| IS1553 | IS256 | Mycobacterium tuberculosis | 28 | 5.3 | |
| ISMsm1 | IS3 | IS51 | Mycobacterium smegmatis | 28 | 5.3 |
| ISRta2 | IS256 | Ralstonia taiwanensis | 28 | 5.3 | |
| ISPst3 | IS21 | Pseudomonas stutzeri | 28 | 5.3 | |
| ISRhru1 | IS1595 | ISSod11 | Rhodospirillum rubrum | 28 | 5.3 |
| ISCro1 | IS66 | Citrobacter rodentium | 28 | 5.3 | |
| ISMamg1 | IS3 | IS407 | Magnetospirillum magneticum | 28 | 5.3 |
| ISBlma1 | IS4 | IS4Sa | Blastopirellula marina | 28 | 5.3 |
| ISMyca1 | IS1634 | Mycobacterium canettii | 28 | 5.3 | |
| ISXo7 | IS630 | - | Xanthomonas oryzae | 28 | 5.3 |
| ISMt2 | IS21 | - | Mycobacterium tuberculosis | 28 | 5.3 |
| IS1650 | IS5 | IS427 | Streptomyces coelicolor | 28 | 5.3 |
| IS1066 | IS630 | - | Pseudomonas sp. | 28 | 5.3 |
>ISMdi18
Length = 3479
Score = 36.2 bits (18), Expect = 0.022
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 240 cgcctcgtcggggaagaggctg 261
||||||||||| ||||||||||
Sbjct: 684 cgcctcgtcggtgaagaggctg 663
>ISMpo2
Length = 3089
Score = 36.2 bits (18), Expect = 0.022
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 240 cgcctcgtcggggaagaggctg 261
||||||||||| ||||||||||
Sbjct: 684 cgcctcgtcggtgaagaggctg 663
>ISHoc2
Length = 1715
Score = 34.2 bits (17), Expect = 0.086
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 23 ccgccagatggccgcgc 39
|||||||||||||||||
Sbjct: 1288 ccgccagatggccgcgc 1304
>ISAzo35
Length = 1451
Score = 34.2 bits (17), Expect = 0.086
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 228 ggcaatgaccggcgcct 244
|||||||||||||||||
Sbjct: 713 ggcaatgaccggcgcct 729
>ISRle39d
Length = 890
Score = 34.2 bits (17), Expect = 0.086
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 131 cctcgacgctgccaagc 147
|||||||||||||||||
Sbjct: 450 cctcgacgctgccaagc 466
>ISRle39B
Length = 890
Score = 34.2 bits (17), Expect = 0.086
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 131 cctcgacgctgccaagc 147
|||||||||||||||||
Sbjct: 452 cctcgacgctgccaagc 468
>ISRle39A
Length = 890
Score = 34.2 bits (17), Expect = 0.086
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 131 cctcgacgctgccaagc 147
|||||||||||||||||
Sbjct: 452 cctcgacgctgccaagc 468
>ISPebe1
Length = 1363
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 236 ccggcgcctcgtcgg 250
|||||||||||||||
Sbjct: 1161 ccggcgcctcgtcgg 1175
>ISAcfe2
Length = 1771
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 243 ctcgtcggggaagag 257
|||||||||||||||
Sbjct: 222 ctcgtcggggaagag 208
>ISAcfe1
Length = 1772
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 243 ctcgtcggggaagag 257
|||||||||||||||
Sbjct: 222 ctcgtcggggaagag 208
>ISPso3
Length = 1283
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 2 gcgcggcaagccgct 16
|||||||||||||||
Sbjct: 893 gcgcggcaagccgct 907
>ISPmar3
Length = 1282
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 2 gcgcggcaagccgct 16
|||||||||||||||
Sbjct: 893 gcgcggcaagccgct 907
>ISPfr13
Length = 1383
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 105 atagaagcggccgag 119
|||||||||||||||
Sbjct: 1353 atagaagcggccgag 1367
>ISPfr4
Length = 1415
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 216 gtcgagcagccgggc 230
|||||||||||||||
Sbjct: 704 gtcgagcagccgggc 690
>ISStma7
Length = 1223
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 27 cagatggccgcgctg 41
|||||||||||||||
Sbjct: 508 cagatggccgcgctg 522
>ISMex3
Length = 1399
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 222 cagccgggcaatgac 236
|||||||||||||||
Sbjct: 557 cagccgggcaatgac 543
>ISMca6
Length = 1180
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 192 caccgcctcggcggc 206
|||||||||||||||
Sbjct: 916 caccgcctcggcggc 930
>Tn5403
Length = 3663
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 221 gcagccgggcaatg 234
||||||||||||||
Sbjct: 1496 gcagccgggcaatg 1483
>TnAs3
Length = 18735
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 209 tgccatcgtcgagc 222
||||||||||||||
Sbjct: 231 tgccatcgtcgagc 244
>ISMdi15
Length = 1344
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 36 gcgctgcgcggcaa 49
||||||||||||||
Sbjct: 803 gcgctgcgcggcaa 816
>TnAs2
Length = 8650
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 36 gcgctgcgcggcaa 49
||||||||||||||
Sbjct: 8456 gcgctgcgcggcaa 8469
>ISNml3
Length = 1798
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 3 cgcggcaagccgct 16
||||||||||||||
Sbjct: 1303 cgcggcaagccgct 1290
>ISVsp8
Length = 1802
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 103 tgatagaagcggcc 116
||||||||||||||
Sbjct: 667 tgatagaagcggcc 654
>ISPpa7
Length = 2731
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 4 gcggcaagccgctt 17
||||||||||||||
Sbjct: 2018 gcggcaagccgctt 2031
>ISMno10
Length = 1749
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 193 accgcctcggcggc 206
||||||||||||||
Sbjct: 315 accgcctcggcggc 302
>ISMno8
Length = 1466
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 238 ggcgcctcgtcggg 251
||||||||||||||
Sbjct: 765 ggcgcctcgtcggg 778
>ISArsp6
Length = 26712
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 33 gccgcgctgcgcgg 46
||||||||||||||
Sbjct: 12444 gccgcgctgcgcgg 12457
>ISVsp19
Length = 1802
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 103 tgatagaagcggcc 116
||||||||||||||
Sbjct: 667 tgatagaagcggcc 654
>ISBco2
Length = 1574
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 221 gcagccgggcaatg 234
||||||||||||||
Sbjct: 1252 gcagccgggcaatg 1239
>ISAnsp12
Length = 2926
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 215 cgtcgagcagccgg 228
||||||||||||||
Sbjct: 1599 cgtcgagcagccgg 1586
>ISMex27
Length = 2493
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 215 cgtcgagcagccgg 228
||||||||||||||
Sbjct: 1516 cgtcgagcagccgg 1503
>ISAcma25
Length = 950
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 106 tagaagcggccgag 119
||||||||||||||
Sbjct: 574 tagaagcggccgag 587
>ISThsp12
Length = 2004
Score = 28.2 bits (14), Expect = 5.3
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 191 ccaccgcctcggcggcga 208
||||||||||| ||||||
Sbjct: 777 ccaccgcctcgccggcga 760
>ISCARN74
Length = 1203
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 34 ccgcgctgcgcggc 47
||||||||||||||
Sbjct: 321 ccgcgctgcgcggc 334
>ISThsp7
Length = 1920
Score = 28.2 bits (14), Expect = 5.3
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 195 cgcctcggcggcgatgcc 212
||||||||||||| ||||
Sbjct: 891 cgcctcggcggcgttgcc 874
>ISThsp4
Length = 1289
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 23 ccgccagatggccg 36
||||||||||||||
Sbjct: 229 ccgccagatggccg 216
>ISMlu1
Length = 1413
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 79 cccaccccgggccg 92
||||||||||||||
Sbjct: 270 cccaccccgggccg 283
>ISAli3
Length = 1167
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 3 cgcggcaagccgct 16
||||||||||||||
Sbjct: 623 cgcggcaagccgct 636
>IS1553
Length = 1406
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 199 tcggcggcgatgcc 212
||||||||||||||
Sbjct: 702 tcggcggcgatgcc 689
>ISMsm1
Length = 1345
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 31 tggccgcgctgcgc 44
||||||||||||||
Sbjct: 282 tggccgcgctgcgc 295
Score = 28.2 bits (14), Expect = 5.3
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 35 cgcgctgcgcggcaaacg 52
|||| |||||||||||||
Sbjct: 684 cgcggtgcgcggcaaacg 701
>ISRta2
Length = 1386
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 192 caccgcctcggcgg 205
||||||||||||||
Sbjct: 162 caccgcctcggcgg 149
>ISPst3
Length = 2606
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 256 aggctgccgctctc 269
||||||||||||||
Sbjct: 1458 aggctgccgctctc 1445
>ISRhru1
Length = 1027
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 241 gcctcgtcggggaa 254
||||||||||||||
Sbjct: 153 gcctcgtcggggaa 140
>ISCro1
Length = 2699
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 23 ccgccagatggccg 36
||||||||||||||
Sbjct: 1166 ccgccagatggccg 1179
>ISMamg1
Length = 1256
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 2 gcgcggcaagccgc 15
||||||||||||||
Sbjct: 840 gcgcggcaagccgc 853
>ISBlma1
Length = 1528
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 143 caagccgcgccgcc 156
||||||||||||||
Sbjct: 1395 caagccgcgccgcc 1408
>ISMyca1
Length = 1968
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 196 gcctcggcggcgat 209
||||||||||||||
Sbjct: 1374 gcctcggcggcgat 1361
>ISXo7
Length = 1114
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 215 cgtcgagcagccgg 228
||||||||||||||
Sbjct: 283 cgtcgagcagccgg 270
>ISMt2
Length = 2645
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 31 tggccgcgctgcgc 44
||||||||||||||
Sbjct: 2069 tggccgcgctgcgc 2082
>IS1650
Length = 898
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 89 gccgcggatgggtc 102
||||||||||||||
Sbjct: 105 gccgcggatgggtc 118
>IS1066
Length = 1137
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 39 ctgcgcggcaaacg 52
||||||||||||||
Sbjct: 189 ctgcgcggcaaacg 202
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_169_length_269_cov_0.760417_ID_5508
(269 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISPsy4 | IS21 | Pseudomonas syringae | 34 | 0.086 | |
| ISSoc5 | IS200/IS605 | IS1341 | Synechococcus sp | 32 | 0.34 |
| ISCARN105 | IS3 | IS3 | Metagenomic data from CARNOULES | 32 | 0.34 |
| ISAar44 | IS3 | IS3 | Arthrobacter arilaitensis | 30 | 1.3 |
| ISGsp2 | IS1380 | Geobacillus sp. | 30 | 1.3 | |
| ISChy4 | IS21 | Carboxydothermus hydrogenoformans | 30 | 1.3 | |
| ISRso11 | IS3 | IS150 | Ralstonia solanacearum | 30 | 1.3 |
| ISBj11 | IS21 | Bradyrhizobium japonicum | 28 | 5.3 | |
| ISHaha2 | ISL3 | Halobacillus halophilus | 28 | 5.3 | |
| ISPsy30 | Tn3 | Pseudomonas syringae | 28 | 5.3 | |
| ISRel21 | IS3 | IS407 | Rhizobium etli | 28 | 5.3 |
| ISGau7 | IS21 | Gemmatimonas aurantiaca | 28 | 5.3 | |
| ISNosp1 | IS1380 | Nocardioides sp. | 28 | 5.3 | |
| ISCARN18 | IS110 | IS1111 | Metagenomic data from CARNOULES | 28 | 5.3 |
| ISDha10 | IS110 | Desulfitobacterium hafniense | 28 | 5.3 | |
| ISAli11 | ISL3 | Azospirillum lipoferum | 28 | 5.3 | |
| ISRosp3 | IS1595 | ISNha5 | Roseobacter sp. | 28 | 5.3 |
| ISYps7 | IS1 | Yersinia pseudotuberculosis | 28 | 5.3 | |
| ISLin2 | IS3 | IS3 | Leptospira interrogans | 28 | 5.3 |
| IS1500A | IS3 | IS3 | Leptospira interrogans | 28 | 5.3 |
>ISPsy4
Length = 1962
Score = 34.2 bits (17), Expect = 0.086
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 71 ggcagcctgatcctcac 87
|||||||||||||||||
Sbjct: 1690 ggcagcctgatcctcac 1706
>ISSoc5
Length = 1413
Score = 32.2 bits (16), Expect = 0.34
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 54 tggaaatcccggcgct 69
||||||||||||||||
Sbjct: 987 tggaaatcccggcgct 972
>ISCARN105
Length = 1661
Score = 32.2 bits (16), Expect = 0.34
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 246 gtctttatcactcccg 261
||||||||||||||||
Sbjct: 723 gtctttatcactcccg 708
>ISAar44
Length = 1599
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 189 tgggcatgttgatga 203
|||||||||||||||
Sbjct: 1400 tgggcatgttgatga 1414
>ISGsp2
Length = 1677
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 117 tgaaagatttcccga 131
|||||||||||||||
Sbjct: 98 tgaaagatttcccga 112
>ISChy4
Length = 2172
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 101 aaacaggtccctgcc 115
|||||||||||||||
Sbjct: 415 aaacaggtccctgcc 429
>ISRso11
Length = 1449
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 2 ctgctgctgtttggc 16
|||||||||||||||
Sbjct: 892 ctgctgctgtttggc 906
>ISBj11
Length = 2649
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 2 ctgctgctgtttgg 15
||||||||||||||
Sbjct: 2032 ctgctgctgtttgg 2045
>ISHaha2
Length = 1378
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 185 ggtatgggcatgtt 198
||||||||||||||
Sbjct: 139 ggtatgggcatgtt 126
>ISPsy30
Length = 5167
Score = 28.2 bits (14), Expect = 5.3
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 226 ctggctgcgctatcggca 243
|||||||||||| |||||
Sbjct: 2969 ctggctgcgctaccggca 2986
>ISRel21
Length = 1200
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 155 atcgtcttctggtc 168
||||||||||||||
Sbjct: 65 atcgtcttctggtc 52
>ISGau7
Length = 2510
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 2 ctgctgctgtttgg 15
||||||||||||||
Sbjct: 144 ctgctgctgtttgg 131
>ISNosp1
Length = 1678
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 8 ctgtttggcgtgcc 21
||||||||||||||
Sbjct: 609 ctgtttggcgtgcc 596
>ISCARN18
Length = 1561
Score = 28.2 bits (14), Expect = 5.3
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 8 ctgtttggcgtgccggac 25
|||| |||||||||||||
Sbjct: 1374 ctgtatggcgtgccggac 1391
>ISDha10
Length = 1976
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 116 ctgaaagatttccc 129
||||||||||||||
Sbjct: 893 ctgaaagatttccc 906
>ISAli11
Length = 1739
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 55 ggaaatcccggcgc 68
||||||||||||||
Sbjct: 433 ggaaatcccggcgc 446
>ISRosp3
Length = 3472
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 238 tcggcagcgtcttt 251
||||||||||||||
Sbjct: 2970 tcggcagcgtcttt 2957
>ISYps7
Length = 787
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 154 tatcgtcttctggt 167
||||||||||||||
Sbjct: 537 tatcgtcttctggt 550
>ISLin2
Length = 1236
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 127 cccgaaagaggatc 140
||||||||||||||
Sbjct: 777 cccgaaagaggatc 764
>IS1500A
Length = 1235
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 127 cccgaaagaggatc 140
||||||||||||||
Sbjct: 776 cccgaaagaggatc 763
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_170_length_269_cov_0.760417_ID_5510
(269 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| IS1245 | IS256 | - | Mycobacterium avium | 38 | 0.005 |
| ISMno25 | IS110 | IS1111 | Methylobacterium nodulans | 32 | 0.34 |
| ISAzs29 | Tn3 | Azospirillum sp. | 32 | 0.34 | |
| ISRm17 | ISNCY | ISDol1 | Sinorhizobium meliloti | 32 | 0.34 |
| ISRle10 | ISNCY | ISDol1 | Rhizobium leguminosarum | 32 | 0.34 |
| ISAnsp8 | IS3 | IS407 | Anaeromyxobacter sp. | 32 | 0.34 |
| ISCARN58 | IS21 | Metagenomic data from CARNOULES | 32 | 0.34 | |
| ISLxc1 | IS21 | Leifsonia xyli | 32 | 0.34 | |
| IS999 | IS3 | IS51 | Mycobacterium avium | 32 | 0.34 |
| ISStma11 | ISL3 | Stenotrophomonas maltophilia | 30 | 1.3 | |
| ISGdi1 | IS5 | IS1031 | Gluconacetobacter diazotrophicus | 30 | 1.3 |
| ISAli1 | IS5 | IS1031 | Azospirillum lipoferum | 30 | 1.3 |
| ISFsp10 | IS66 | ISBst12 | Frankia sp. | 30 | 1.3 |
| ISRpa6 | ISAs1 | Rhodopseudomonas palustris | 30 | 1.3 | |
| IS1008 | IS6 | Acinetobacter calcoaceticus | 30 | 1.3 | |
| ISOcsp1 | IS21 | Ochrobactrum sp. | 30 | 1.3 | |
| ISOur1 | IS6 | Oligella urethralis | 30 | 1.3 | |
| ISXfu1 | IS5 | IS5 | Xanthomonas fuscans | 30 | 1.3 |
| TnAs3 | Tn3 | Aeromonas salmonicida | 28 | 5.3 | |
| ISHti11 | IS200/IS605 | IS1341 | Halorhabdus tiamatea | 28 | 5.3 |
| ISNma12 | IS200/IS605 | IS605 | Natrialba magadii | 28 | 5.3 |
| ISNaoc1 | IS200/IS605 | IS1341 | Natronococcus occultus | 28 | 5.3 |
| ISNpe26 | IS200/IS605 | IS1341 | Natrinema pellirubrum | 28 | 5.3 |
| ISPko3 | IS5 | IS903 | Paracoccus kondratievae | 28 | 5.3 |
| ISNamo18 | IS200/IS605 | IS605 | Natronomonas moolapensis | 28 | 5.3 |
| ISThio1 | ISKra4 | ISKra4 | Thiorhodovibrio sp. | 28 | 5.3 |
| ISMva4 | IS256 | Mycobacterium vanbaalenii | 28 | 5.3 | |
| ISMlu11 | IS256 | Micrococcus luteus | 28 | 5.3 | |
| ISPa38 | Tn3 | Pseudomonas aeruginosa | 28 | 5.3 | |
| ISAzs17 | Tn3 | Azospirillum sp. | 28 | 5.3 | |
| ISShes11 | Tn3 | Shewanella sp. | 28 | 5.3 | |
| ISCph1 | IS630 | Chlorobium phaeobacteroides | 28 | 5.3 | |
| ISBlo15 | IS200/IS605 | IS1341 | Bifidobacterium longum | 28 | 5.3 |
| ISMno34 | IS6 | Methylobacterium nodulans | 28 | 5.3 | |
| ISArsp6 | Tn3 | Arthrobacter sp. | 28 | 5.3 | |
| ISMch4 | IS110 | IS1111 | Methylobacterium chloromethanicum | 28 | 5.3 |
| ISNml2 | IS1380 | Nakamurella multipartita | 28 | 5.3 | |
| ISAzba8 | IS256 | Azospirillum brasilense | 28 | 5.3 | |
| ISAar9 | IS1380 | Arthrobacter arilaitensis | 28 | 5.3 | |
| ISCysp8 | ISAs1 | Cyanothece sp. | 28 | 5.3 | |
| ISThsp11 | IS3 | IS3 | Thiomonas sp. | 28 | 5.3 |
| ISAzo33 | IS630 | Azoarcus sp. | 28 | 5.3 | |
| ISCARN71 | IS5 | IS5 | Metagenomic data from CARNOULES | 28 | 5.3 |
| ISAzo15 | IS66 | Azoarcus sp. | 28 | 5.3 | |
| ISAzo12 | IS21 | Azoarcus sp. | 28 | 5.3 | |
| ISAli20 | Tn3 | Azospirillum lipoferum | 28 | 5.3 | |
| ISArch19 | IS66 | ISBst12 | uncultured archaeon | 28 | 5.3 |
| ISFsp11 | IS66 | ISBst12 | Frankia sp. | 28 | 5.3 |
| ISGvi2 | IS4 | IS50 | Gloeobacter violaceus | 28 | 5.3 |
| ISBfun1 | IS110 | IS1111 | Burkholderia fungorum | 28 | 5.3 |
| ISCgl1 | IS481 | Corynebacterium glutamicum | 28 | 5.3 | |
| IS987 | IS3 | IS51 | Mycobacterium bovis | 28 | 5.3 |
| IS5564 | IS481 | Corynebacterium striatum | 28 | 5.3 | |
| IS1629 | ISAs1 | - | Streptomyces sp. | 28 | 5.3 |
>IS1245
Length = 1414
Score = 38.2 bits (19), Expect = 0.005
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 134 gccgccgccgacctcaccgcctt 156
|||||||||||| ||||||||||
Sbjct: 1058 gccgccgccgacatcaccgcctt 1080
>ISMno25
Length = 1518
Score = 32.2 bits (16), Expect = 0.34
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 115 caacggcgacgccctc 130
||||||||||||||||
Sbjct: 1298 caacggcgacgccctc 1283
>ISAzs29
Length = 3897
Score = 32.2 bits (16), Expect = 0.34
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 28 cgccgcccgcgccgac 43
||||||||||||||||
Sbjct: 688 cgccgcccgcgccgac 673
>ISRm17
Length = 1664
Score = 32.2 bits (16), Expect = 0.34
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 152 gcctttgcccggctgc 167
||||||||||||||||
Sbjct: 414 gcctttgcccggctgc 429
>ISRle10
Length = 1665
Score = 32.2 bits (16), Expect = 0.34
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 152 gcctttgcccggctgc 167
||||||||||||||||
Sbjct: 413 gcctttgcccggctgc 428
>ISAnsp8
Length = 1225
Score = 32.2 bits (16), Expect = 0.34
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 29 gccgcccgcgccgacg 44
||||||||||||||||
Sbjct: 666 gccgcccgcgccgacg 681
>ISCARN58
Length = 2436
Score = 32.2 bits (16), Expect = 0.34
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 124 cgccctcaacgccgcc 139
||||||||||||||||
Sbjct: 843 cgccctcaacgccgcc 828
>ISLxc1
Length = 3533
Score = 32.2 bits (16), Expect = 0.34
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 124 cgccctcaacgccgcc 139
||||||||||||||||
Sbjct: 1807 cgccctcaacgccgcc 1792
>IS999
Length = 1347
Score = 32.2 bits (16), Expect = 0.34
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 17 gccctgcgcgacgccg 32
||||||||||||||||
Sbjct: 528 gccctgcgcgacgccg 543
>ISStma11
Length = 4621
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 152 gcctttgcccggctg 166
|||||||||||||||
Sbjct: 2391 gcctttgcccggctg 2377
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 129 tcaacgccgccgcc 142
||||||||||||||
Sbjct: 2907 tcaacgccgccgcc 2920
>ISGdi1
Length = 930
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 94 tgccgccgacatcca 108
|||||||||||||||
Sbjct: 556 tgccgccgacatcca 570
>ISAli1
Length = 933
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 94 tgccgccgacatcca 108
|||||||||||||||
Sbjct: 558 tgccgccgacatcca 572
>ISFsp10
Length = 1713
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 30 ccgcccgcgccgacg 44
|||||||||||||||
Sbjct: 870 ccgcccgcgccgacg 884
>ISRpa6
Length = 1193
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 63 acgccgaccacggcc 77
|||||||||||||||
Sbjct: 764 acgccgaccacggcc 778
>IS1008
Length = 820
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 230 gatcaactgcacgat 244
|||||||||||||||
Sbjct: 352 gatcaactgcacgat 338
>ISOcsp1
Length = 1955
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 135 ccgccgccgacctca 149
|||||||||||||||
Sbjct: 1521 ccgccgccgacctca 1535
>ISOur1
Length = 820
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 230 gatcaactgcacgat 244
|||||||||||||||
Sbjct: 352 gatcaactgcacgat 338
>ISXfu1
Length = 1162
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 76 ccagcgcattctcgg 90
|||||||||||||||
Sbjct: 1076 ccagcgcattctcgg 1062
>TnAs3
Length = 18735
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 124 cgccctcaacgccg 137
||||||||||||||
Sbjct: 16206 cgccctcaacgccg 16219
>ISHti11
Length = 1521
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 141 ccgacctcaccgcc 154
||||||||||||||
Sbjct: 342 ccgacctcaccgcc 355
>ISNma12
Length = 1923
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 61 ccacgccgaccacg 74
||||||||||||||
Sbjct: 410 ccacgccgaccacg 423
>ISNaoc1
Length = 1465
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 141 ccgacctcaccgcc 154
||||||||||||||
Sbjct: 344 ccgacctcaccgcc 357
>ISNpe26
Length = 1468
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 141 ccgacctcaccgcc 154
||||||||||||||
Sbjct: 347 ccgacctcaccgcc 360
>ISPko3
Length = 1017
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 28 cgccgcccgcgccg 41
||||||||||||||
Sbjct: 684 cgccgcccgcgccg 697
>ISNamo18
Length = 1885
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 61 ccacgccgaccacg 74
||||||||||||||
Sbjct: 408 ccacgccgaccacg 421
>ISThio1
Length = 1756
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 46 acagacccggctga 59
||||||||||||||
Sbjct: 836 acagacccggctga 849
>ISMva4
Length = 1458
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 29 gccgcccgcgccga 42
||||||||||||||
Sbjct: 987 gccgcccgcgccga 1000
>ISMlu11
Length = 1434
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 25 cgacgccgcccgcg 38
||||||||||||||
Sbjct: 169 cgacgccgcccgcg 156
>ISPa38
Length = 6455
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 124 cgccctcaacgccg 137
||||||||||||||
Sbjct: 3926 cgccctcaacgccg 3939
>ISAzs17
Length = 7252
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 62 cacgccgaccacgg 75
||||||||||||||
Sbjct: 1695 cacgccgaccacgg 1708
>ISShes11
Length = 7669
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 124 cgccctcaacgccg 137
||||||||||||||
Sbjct: 5140 cgccctcaacgccg 5153
>ISCph1
Length = 1216
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 199 gcgcttcaccacgg 212
||||||||||||||
Sbjct: 1145 gcgcttcaccacgg 1158
>ISBlo15
Length = 1593
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 48 agacccggctgacc 61
||||||||||||||
Sbjct: 1248 agacccggctgacc 1261
>ISMno34
Length = 889
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 18 ccctgcgcgacgcc 31
||||||||||||||
Sbjct: 186 ccctgcgcgacgcc 199
>ISArsp6
Length = 26712
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 178 cctgcgcaaacgcg 191
||||||||||||||
Sbjct: 2200 cctgcgcaaacgcg 2187
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 67 cgaccacggccagc 80
||||||||||||||
Sbjct: 8525 cgaccacggccagc 8512
>ISMch4
Length = 1631
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 32 gcccgcgccgacgc 45
||||||||||||||
Sbjct: 663 gcccgcgccgacgc 676
>ISNml2
Length = 1689
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 127 cctcaacgccgccg 140
||||||||||||||
Sbjct: 261 cctcaacgccgccg 248
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 165 tgcaactggccacc 178
||||||||||||||
Sbjct: 1292 tgcaactggccacc 1305
>ISAzba8
Length = 1321
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 67 cgaccacggccagc 80
||||||||||||||
Sbjct: 755 cgaccacggccagc 742
>ISAar9
Length = 1735
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 162 ggctgcaactggcc 175
||||||||||||||
Sbjct: 1335 ggctgcaactggcc 1348
>ISCysp8
Length = 1556
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 218 attctcgaccccga 231
||||||||||||||
Sbjct: 435 attctcgaccccga 448
>ISThsp11
Length = 1814
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 132 acgccgccgccgac 145
||||||||||||||
Sbjct: 67 acgccgccgccgac 54
>ISAzo33
Length = 1100
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 13 actcgccctgcgcg 26
||||||||||||||
Sbjct: 702 actcgccctgcgcg 689
>ISCARN71
Length = 1299
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 57 tgacccacgccgac 70
||||||||||||||
Sbjct: 725 tgacccacgccgac 738
>ISAzo15
Length = 2441
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 20 ctgcgcgacgccgc 33
||||||||||||||
Sbjct: 1110 ctgcgcgacgccgc 1123
>ISAzo12
Length = 3075
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 256 cctcaagcaactgc 269
||||||||||||||
Sbjct: 1847 cctcaagcaactgc 1860
>ISAli20
Length = 3828
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 173 gccaccctgcgcaa 186
||||||||||||||
Sbjct: 2191 gccaccctgcgcaa 2204
>ISArch19
Length = 1540
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 96 ccgccgacatccat 109
||||||||||||||
Sbjct: 1165 ccgccgacatccat 1178
>ISFsp11
Length = 1836
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 28 cgccgcccgcgccg 41
||||||||||||||
Sbjct: 1347 cgccgcccgcgccg 1360
>ISGvi2
Length = 1487
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 159 cccggctgcaactg 172
||||||||||||||
Sbjct: 880 cccggctgcaactg 867
>ISBfun1
Length = 1466
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 69 accacggccagcgc 82
||||||||||||||
Sbjct: 777 accacggccagcgc 790
>ISCgl1
Length = 2435
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 69 accacggccagcgc 82
||||||||||||||
Sbjct: 235 accacggccagcgc 222
>IS987
Length = 1355
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 193 ccgcaagcgcttca 206
||||||||||||||
Sbjct: 288 ccgcaagcgcttca 275
>IS5564
Length = 2437
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 69 accacggccagcgc 82
||||||||||||||
Sbjct: 234 accacggccagcgc 221
>IS1629
Length = 1462
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 29 gccgcccgcgccga 42
||||||||||||||
Sbjct: 611 gccgcccgcgccga 624
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_171_length_269_cov_0.760417_ID_5512
(269 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISArsp6 | Tn3 | Arthrobacter sp. | 32 | 0.34 | |
| ISThsp8 | IS1634 | Thiomonas sp. | 32 | 0.34 | |
| ISCau1 | IS256 | IS1249 | Corynebacterium aurimucosum | 30 | 1.3 |
| ISHvo6 | IS1595 | ISH4 | Haloferax volcanii | 30 | 1.3 |
| ISSac3 | ISNCY | ISDol1 | Syntrophus aciditrophicus | 30 | 1.3 |
| ISSac2 | IS5 | IS5 | Syntrophus aciditrophicus | 30 | 1.3 |
| ISRhba3 | IS481 | Rhodobacterales bacterium | 30 | 1.3 | |
| ISBcen23 | IS3 | IS407 | Burkholderia cenocepacia | 30 | 1.3 |
| TnXo19 | Tn3 | Xanthomonas oryzae | 28 | 5.3 | |
| ISAri1 | IS21 | Aeromonas rivuli | 28 | 5.3 | |
| ISAeme17 | IS21 | Aeromonas media | 28 | 5.3 | |
| ISPa43 | Tn3 | Pseudomonas aeruginosa | 28 | 5.3 | |
| ISHut1 | IS5 | ISH1 | Halorhabdus utahensis | 28 | 5.3 |
| ISMex26 | ISL3 | Methylobacterium extorquens | 28 | 5.3 | |
| ISThi1 | IS5 | IS5 | Thioalkalivibrio sp. | 28 | 5.3 |
| ISCARN48 | IS66 | Metagenomic data from CARNOULES | 28 | 5.3 | |
| ISMpo2 | IS1595 | ISNwi1 | Methylobacterium populi | 28 | 5.3 |
| ISPre2 | IS5 | IS5 | Pseudomonas resinovorans | 28 | 5.3 |
| ISClph1 | IS1595 | ISPna2 | Clostridium phytofermentans | 28 | 5.3 |
| ISSod9 | Tn3 | Shewanella oneidensis | 28 | 5.3 | |
| ISPsp1 | IS5 | IS5 | Pseudomonas sp | 28 | 5.3 |
| IS1384 | IS5 | IS5 | Pseudomonas putida | 28 | 5.3 |
| IS1110 | IS110 | - | Mycobacterium avium | 28 | 5.3 |
>ISArsp6
Length = 26712
Score = 32.2 bits (16), Expect = 0.34
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 157 cggataccggcagcga 172
||||||||||||||||
Sbjct: 17622 cggataccggcagcga 17637
>ISThsp8
Length = 1929
Score = 32.2 bits (16), Expect = 0.34
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 215 gaccaatgtgccagag 230
||||||||||||||||
Sbjct: 1478 gaccaatgtgccagag 1493
>ISCau1
Length = 1449
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 167 cagcgatattcggca 181
|||||||||||||||
Sbjct: 309 cagcgatattcggca 323
>ISHvo6
Length = 1047
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 107 ccgccgcggtaccga 121
|||||||||||||||
Sbjct: 582 ccgccgcggtaccga 568
>ISSac3
Length = 1595
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 210 atcaagaccaatgtg 224
|||||||||||||||
Sbjct: 1117 atcaagaccaatgtg 1131
>ISSac2
Length = 1595
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 210 atcaagaccaatgtg 224
|||||||||||||||
Sbjct: 1117 atcaagaccaatgtg 1131
>ISRhba3
Length = 999
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 232 atctacgccgcaagt 246
|||||||||||||||
Sbjct: 298 atctacgccgcaagt 312
>ISBcen23
Length = 1195
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 164 cggcagcgatattcg 178
|||||||||||||||
Sbjct: 625 cggcagcgatattcg 639
>TnXo19
Length = 18767
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 65 ggcggctacggcgg 78
||||||||||||||
Sbjct: 17822 ggcggctacggcgg 17835
>ISAri1
Length = 1942
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 39 gcgagcttcgccga 52
||||||||||||||
Sbjct: 1202 gcgagcttcgccga 1215
>ISAeme17
Length = 1941
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 39 gcgagcttcgccga 52
||||||||||||||
Sbjct: 1202 gcgagcttcgccga 1215
>ISPa43
Length = 19903
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 65 ggcggctacggcgg 78
||||||||||||||
Sbjct: 18992 ggcggctacggcgg 19005
>ISHut1
Length = 926
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 197 ggcggttgatttca 210
||||||||||||||
Sbjct: 905 ggcggttgatttca 892
>ISMex26
Length = 1676
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 64 cggcggctacggcg 77
||||||||||||||
Sbjct: 715 cggcggctacggcg 728
>ISThi1
Length = 1191
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 100 tcaacttccgccgc 113
||||||||||||||
Sbjct: 375 tcaacttccgccgc 388
>ISCARN48
Length = 2581
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 187 gcgacgcgatggcg 200
||||||||||||||
Sbjct: 293 gcgacgcgatggcg 306
>ISMpo2
Length = 3089
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 9 tccgagcttcgccc 22
||||||||||||||
Sbjct: 906 tccgagcttcgccc 893
>ISPre2
Length = 1190
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 100 tcaacttccgccgc 113
||||||||||||||
Sbjct: 375 tcaacttccgccgc 388
>ISClph1
Length = 1607
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 34 cgtttgcgagcttc 47
||||||||||||||
Sbjct: 666 cgtttgcgagcttc 653
>ISSod9
Length = 4412
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 202 ttgatttcatcaag 215
||||||||||||||
Sbjct: 2716 ttgatttcatcaag 2729
>ISPsp1
Length = 1188
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 100 tcaacttccgccgc 113
||||||||||||||
Sbjct: 375 tcaacttccgccgc 388
>IS1384
Length = 1178
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 100 tcaacttccgccgc 113
||||||||||||||
Sbjct: 369 tcaacttccgccgc 382
>IS1110
Length = 1462
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 253 ggaccgatttcgcc 266
||||||||||||||
Sbjct: 1022 ggaccgatttcgcc 1035
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_172_length_269_cov_0.760417_ID_5514
(269 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISCARN14 | IS5 | IS1031 | Metagenomic data from CARNOULES | 32 | 0.34 |
| ISHarch20 | IS200/IS605 | IS1341 | Halophilic archaeon | 30 | 1.3 |
| ISMyma10 | IS3 | IS51 | Mycobacterium marinum | 30 | 1.3 |
| ISSysp6 | ISKra4 | ISAzba1 | Synechococcus sp. | 30 | 1.3 |
| ISPa43 | Tn3 | Pseudomonas aeruginosa | 30 | 1.3 | |
| ISAzs12 | ISAs1 | Azospirillum sp. | 30 | 1.3 | |
| ISRssp10 | IS5 | Roseovarius sp. | 30 | 1.3 | |
| ISMno32 | IS1182 | Methylobacterium nodulans | 30 | 1.3 | |
| ISMno19 | IS630 | Methylobacterium nodulans | 30 | 1.3 | |
| ISPfr21 | IS481 | Propionibacterium freudenreichii | 30 | 1.3 | |
| ISMdi28 | IS701 | Methylobacterium dichloromethanicum | 30 | 1.3 | |
| ISMex4 | IS1380 | Methylobacterium extorquens | 30 | 1.3 | |
| ISThsp9 | Tn3 | Thiomonas sp. | 30 | 1.3 | |
| ISThsp8 | IS1634 | Thiomonas sp. | 30 | 1.3 | |
| ISCARN16 | IS21 | Metagenomic data from CARNOULES | 30 | 1.3 | |
| ISSco1 | IS481 | - | Streptomyces coelicolor | 30 | 1.3 |
| ISRm2 | IS66 | Sinorhizobium meliloti | 30 | 1.3 | |
| IS1652 | IS481 | - | Streptomyces coelicolor | 30 | 1.3 |
| IS1649 | IS481 | - | Streptomyces coelicolor | 30 | 1.3 |
| IS1096 | ISL3 | - | Mycobacterium smegmatis | 30 | 1.3 |
| ISAeme12 | IS4 | IS4 | Aeromonas media | 28 | 5.3 |
| ISAs31 | IS3 | IS3 | Aeromonas salmonicida | 28 | 5.3 |
| ISEal1 | IS3 | IS3 | Escherichia albertii | 28 | 5.3 |
| ISSal1 | IS66 | Shewanella algae | 28 | 5.3 | |
| ISAzs13 | ISL3 | Azospirillum sp. | 28 | 5.3 | |
| ISGeob6 | IS5 | IS427 | Geodermatophilus obscurus | 28 | 5.3 |
| ISHha2 | IS5 | Halorhodospira halophila | 28 | 5.3 | |
| ISFsp12 | ISAzo13 | Frankia sp. | 28 | 5.3 | |
| ISMno8 | IS1182 | Methylobacterium nodulans | 28 | 5.3 | |
| ISMch6 | IS110 | Methylobacterium chloromethanicum | 28 | 5.3 | |
| ISPfr8 | ISL3 | Propionibacterium freudenreichii | 28 | 5.3 | |
| ISRsp7 | IS1380 | Rhizobium sp. | 28 | 5.3 | |
| ISMdi25 | IS30 | Methylobacterium dichloromethanicum | 28 | 5.3 | |
| ISMdi6 | IS1182 | Methylobacterium dichloromethanicum | 28 | 5.3 | |
| ISSav5 | IS481 | Streptomyces avermitilis | 28 | 5.3 | |
| ISStma11 | ISL3 | Stenotrophomonas maltophilia | 28 | 5.3 | |
| ISStma4 | IS110 | Stenotrophomonas maltophilia | 28 | 5.3 | |
| ISThsp19 | IS21 | Thiomonas sp. | 28 | 5.3 | |
| ISCARN74 | IS5 | IS5 | Metagenomic data from CARNOULES | 28 | 5.3 |
| ISAzo11 | IS5 | IS5 | Azoarcus sp. | 28 | 5.3 |
| ISCARN17 | IS21 | Metagenomic data from CARNOULES | 28 | 5.3 | |
| ISAnsp2 | IS481 | Anaeromyxobacter sp. | 28 | 5.3 | |
| ISStau4 | IS66 | ISBst12 | Stigmatella aurantiaca | 28 | 5.3 |
| ISFsp11 | IS66 | ISBst12 | Frankia sp. | 28 | 5.3 |
| ISRssp5 | IS5 | IS903 | Roseovarius sp. | 28 | 5.3 |
| ISRpa6 | ISAs1 | Rhodopseudomonas palustris | 28 | 5.3 | |
| ISBxe4 | IS481 | Burkholderia xenovorans | 28 | 5.3 | |
| ISAzvi9 | IS3 | IS3 | Azotobacter vinelandii | 28 | 5.3 |
| ISAisp2 | IS3 | IS51 | Acidovorax sp. | 28 | 5.3 |
| ISPst9 | ISL3 | Pseudomonas stutzeri | 28 | 5.3 | |
| ISRso12 | IS3 | IS407 | Ralstonia solanacearum | 28 | 5.3 |
| ISRm7 | IS3 | IS407 | Rhizobium meliloti | 28 | 5.3 |
| IS999 | IS3 | IS51 | Mycobacterium avium | 28 | 5.3 |
| IS931 | IS256 | - | Burkholderia cepacia | 28 | 5.3 |
| IS66 | IS66 | Agrobacterium tumefaciens | 28 | 5.3 | |
| IS110 | IS110 | - | Streptomyces coelicolor | 28 | 5.3 |
>ISCARN14
Length = 1226
Score = 32.2 bits (16), Expect = 0.34
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 51 tcgatgcggatgccgtgggt 70
|||| |||||||||||||||
Sbjct: 962 tcgacgcggatgccgtgggt 943
>ISHarch20
Length = 1533
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 21 tcgccctcgccgtag 35
|||||||||||||||
Sbjct: 694 tcgccctcgccgtag 680
>ISMyma10
Length = 1352
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 97 gccgcggccgggtcg 111
|||||||||||||||
Sbjct: 623 gccgcggccgggtcg 637
>ISSysp6
Length = 2172
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 28 cgccgtagcgcttgc 42
|||||||||||||||
Sbjct: 285 cgccgtagcgcttgc 271
>ISPa43
Length = 19903
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 17 ggtgtcgccctcgcc 31
|||||||||||||||
Sbjct: 9828 ggtgtcgccctcgcc 9814
>ISAzs12
Length = 1196
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 1 tgagcgcgtcgacgg 15
|||||||||||||||
Sbjct: 600 tgagcgcgtcgacgg 586
>ISRssp10
Length = 1364
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 138 caggctggccagcgc 152
|||||||||||||||
Sbjct: 206 caggctggccagcgc 192
>ISMno32
Length = 1538
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 98 ccgcggccgggtcga 112
|||||||||||||||
Sbjct: 1287 ccgcggccgggtcga 1301
>ISMno19
Length = 1138
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 93 gatggccgcggccgg 107
|||||||||||||||
Sbjct: 1089 gatggccgcggccgg 1075
>ISPfr21
Length = 2632
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 15 gcggtgtcgccctcg 29
|||||||||||||||
Sbjct: 1277 gcggtgtcgccctcg 1291
>ISMdi28
Length = 1410
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 53 gatgcggatgccgtg 67
|||||||||||||||
Sbjct: 274 gatgcggatgccgtg 288
>ISMex4
Length = 1615
Score = 30.2 bits (15), Expect = 1.3
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 173 caaagccgcgcagggcatc 191
|||||||||||| ||||||
Sbjct: 990 caaagccgcgcacggcatc 972
>ISThsp9
Length = 6215
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 191 cgccgggcagcagca 205
|||||||||||||||
Sbjct: 2323 cgccgggcagcagca 2309
>ISThsp8
Length = 1929
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 119 gcgcggcgcggatcg 133
|||||||||||||||
Sbjct: 1201 gcgcggcgcggatcg 1187
>ISCARN16
Length = 2594
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 108 gtcgaccttgagcgc 122
|||||||||||||||
Sbjct: 321 gtcgaccttgagcgc 307
>ISSco1
Length = 1057
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 50 ttcgatgcggatgcc 64
|||||||||||||||
Sbjct: 759 ttcgatgcggatgcc 745
>ISRm2
Length = 2593
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 95 tggccgcggccgggt 109
|||||||||||||||
Sbjct: 1840 tggccgcggccgggt 1826
>IS1652
Length = 1060
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 50 ttcgatgcggatgcc 64
|||||||||||||||
Sbjct: 762 ttcgatgcggatgcc 748
>IS1649
Length = 1060
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 50 ttcgatgcggatgcc 64
|||||||||||||||
Sbjct: 762 ttcgatgcggatgcc 748
>IS1096
Length = 2259
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 238 gtggcggcggtcttg 252
|||||||||||||||
Sbjct: 848 gtggcggcggtcttg 834
>ISAeme12
Length = 1426
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 190 tcgccgggcagcag 203
||||||||||||||
Sbjct: 326 tcgccgggcagcag 313
>ISAs31
Length = 1322
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 248 tcttgccgaccatg 261
||||||||||||||
Sbjct: 223 tcttgccgaccatg 210
>ISEal1
Length = 1245
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 194 cgggcagcagcagc 207
||||||||||||||
Sbjct: 174 cgggcagcagcagc 161
>ISSal1
Length = 2528
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 179 cgcgcagggcatcg 192
||||||||||||||
Sbjct: 1546 cgcgcagggcatcg 1533
>ISAzs13
Length = 1769
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 29 gccgtagcgcttgc 42
||||||||||||||
Sbjct: 600 gccgtagcgcttgc 587
>ISGeob6
Length = 912
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 93 gatggccgcggccg 106
||||||||||||||
Sbjct: 610 gatggccgcggccg 597
>ISHha2
Length = 1339
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 173 caaagccgcgcagg 186
||||||||||||||
Sbjct: 721 caaagccgcgcagg 708
>ISFsp12
Length = 1730
Score = 28.2 bits (14), Expect = 5.3
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 13 cggcggtgtcgccctcgc 30
||||||||||||| ||||
Sbjct: 811 cggcggtgtcgccgtcgc 794
>ISMno8
Length = 1466
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 121 gcggcgcggatcgc 134
||||||||||||||
Sbjct: 703 gcggcgcggatcgc 690
>ISMch6
Length = 1379
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 179 cgcgcagggcatcg 192
||||||||||||||
Sbjct: 782 cgcgcagggcatcg 769
>ISPfr8
Length = 1436
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 183 cagggcatcgccgg 196
||||||||||||||
Sbjct: 917 cagggcatcgccgg 904
>ISRsp7
Length = 2024
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 220 aagatcggcgccca 233
||||||||||||||
Sbjct: 1511 aagatcggcgccca 1524
>ISMdi25
Length = 1601
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 224 tcggcgcccacagc 237
||||||||||||||
Sbjct: 1191 tcggcgcccacagc 1204
>ISMdi6
Length = 1466
Score = 28.2 bits (14), Expect = 5.3
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 83 gtcagcctccgatggccg 100
|||||||||||| |||||
Sbjct: 1168 gtcagcctccgacggccg 1151
>ISSav5
Length = 1953
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 254 cgaccatgaagccg 267
||||||||||||||
Sbjct: 1717 cgaccatgaagccg 1704
>ISStma11
Length = 4621
Score = 28.2 bits (14), Expect = 5.3
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 185 gggcatcgccgggcagca 202
||||||||||| ||||||
Sbjct: 2619 gggcatcgccgcgcagca 2636
>ISStma4
Length = 1249
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 18 gtgtcgccctcgcc 31
||||||||||||||
Sbjct: 1239 gtgtcgccctcgcc 1226
>ISThsp19
Length = 2657
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 175 aagccgcgcagggc 188
||||||||||||||
Sbjct: 2510 aagccgcgcagggc 2497
>ISCARN74
Length = 1203
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 53 gatgcggatgccgt 66
||||||||||||||
Sbjct: 478 gatgcggatgccgt 465
>ISAzo11
Length = 1280
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 13 cggcggtgtcgccc 26
||||||||||||||
Sbjct: 1180 cggcggtgtcgccc 1167
>ISCARN17
Length = 2539
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 22 cgccctcgccgtag 35
||||||||||||||
Sbjct: 593 cgccctcgccgtag 580
>ISAnsp2
Length = 1298
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 52 cgatgcggatgccg 65
||||||||||||||
Sbjct: 747 cgatgcggatgccg 734
>ISStau4
Length = 1579
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 224 tcggcgcccacagc 237
||||||||||||||
Sbjct: 438 tcggcgcccacagc 425
>ISFsp11
Length = 1836
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 6 gcgtcgacggcggt 19
||||||||||||||
Sbjct: 1709 gcgtcgacggcggt 1696
>ISRssp5
Length = 1047
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 121 gcggcgcggatcgc 134
||||||||||||||
Sbjct: 126 gcggcgcggatcgc 139
>ISRpa6
Length = 1193
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 121 gcggcgcggatcgc 134
||||||||||||||
Sbjct: 728 gcggcgcggatcgc 715
>ISBxe4
Length = 1090
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 32 gtagcgcttgcgca 45
||||||||||||||
Sbjct: 566 gtagcgcttgcgca 553
>ISAzvi9
Length = 1246
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 180 gcgcagggcatcgc 193
||||||||||||||
Sbjct: 883 gcgcagggcatcgc 870
>ISAisp2
Length = 1241
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 41 gcgcaggccttcga 54
||||||||||||||
Sbjct: 621 gcgcaggccttcga 608
>ISPst9
Length = 2472
Score = 28.2 bits (14), Expect = 5.3
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 123 ggcgcggatcgccatcag 140
||||| ||||||||||||
Sbjct: 795 ggcgctgatcgccatcag 812
>ISRso12
Length = 1225
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 173 caaagccgcgcagg 186
||||||||||||||
Sbjct: 428 caaagccgcgcagg 441
>ISRm7
Length = 912
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 245 cggtcttgccgacc 258
||||||||||||||
Sbjct: 558 cggtcttgccgacc 545
>IS999
Length = 1347
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 63 ccgtgggtgggatg 76
||||||||||||||
Sbjct: 1254 ccgtgggtgggatg 1241
>IS931
Length = 1477
Score = 28.2 bits (14), Expect = 5.3
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 95 tggccgcggccgggtcga 112
||||||||||| ||||||
Sbjct: 287 tggccgcggcctggtcga 304
>IS66
Length = 2556
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 120 cgcggcgcggatcg 133
||||||||||||||
Sbjct: 2349 cgcggcgcggatcg 2362
>IS110
Length = 1558
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 244 gcggtcttgccgac 257
||||||||||||||
Sbjct: 323 gcggtcttgccgac 310
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_173_length_269_cov_0.760417_ID_5516
(269 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISStma11 | ISL3 | Stenotrophomonas maltophilia | 32 | 0.34 | |
| TnAs3 | Tn3 | Aeromonas salmonicida | 30 | 1.3 | |
| ISMex22 | Tn3 | Methylobacterium extorquens | 30 | 1.3 | |
| ISAzo11 | IS5 | IS5 | Azoarcus sp. | 30 | 1.3 |
| ISShes10 | IS30 | Shewanella sp. | 30 | 1.3 | |
| ISPsy27 | IS1182 | Pseudomonas syringae | 30 | 1.3 | |
| ISDeal1 | IS66 | Dethiobacter alkaliphilus | 30 | 1.3 | |
| ISKpn1 | IS3 | IS150 | Klebsiella pneumoniae | 30 | 1.3 |
| ISRtr5 | IS66 | Rhizobium tropici | 28 | 5.3 | |
| ISVpa4 | IS3 | IS150 | Vibrio parahaemolyticus | 28 | 5.3 |
| ISKpn19 | ISKra4 | ISAzba1 | Klebsiella pneumoniae | 28 | 5.3 |
| ISNph6 | IS200/IS605 | Natronomonas pharaonis | 28 | 5.3 | |
| ISPfr3 | ISL3 | Propionibacterium freudenreichii | 28 | 5.3 | |
| ISMdi12 | IS110 | IS1111 | Methylobacterium dichloromethanicum | 28 | 5.3 |
| ISMex31 | IS110 | IS1111 | Methylobacterium extorquens | 28 | 5.3 |
| ISBps2 | IS3 | IS3 | Burkholderia pseudomallei | 28 | 5.3 |
| ISMdi7 | IS21 | Methylobacterium dichloromethanicum | 28 | 5.3 | |
| ISAcma19 | IS4 | IS10 | Acaryochloris marina | 28 | 5.3 |
| ISCARN110 | IS91 | Metagenomic data from CARNOULES | 28 | 5.3 | |
| ISAzo22 | IS110 | Azoarcus sp. | 28 | 5.3 | |
| ISKrh2 | IS481 | Kocuria rhizophila | 28 | 5.3 | |
| ISCausp2 | IS1595 | ISNha5 | Caulobacter sp. | 28 | 5.3 |
| ISEli1 | IS3 | IS407 | Erythrobacter litoralis | 28 | 5.3 |
| IS1661 | IS3 | IS150 | Yersinia pestis | 28 | 5.3 |
| ISMt1 | IS5 | IS427 | Mycobacterium tuberculosis | 28 | 5.3 |
>ISStma11
Length = 4621
Score = 32.2 bits (16), Expect = 0.34
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 97 tcaaggacgcgcacacgctg 116
||||||| ||||||||||||
Sbjct: 2615 tcaaggatgcgcacacgctg 2596
>TnAs3
Length = 18735
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 141 cgggcaggcggcgca 155
|||||||||||||||
Sbjct: 1014 cgggcaggcggcgca 1000
>ISMex22
Length = 3864
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 212 ggccgcggcggtgtt 226
|||||||||||||||
Sbjct: 1050 ggccgcggcggtgtt 1064
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 249 accagccgggccag 262
||||||||||||||
Sbjct: 2837 accagccgggccag 2824
>ISAzo11
Length = 1280
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 168 ccgctgcctcaggcg 182
|||||||||||||||
Sbjct: 1136 ccgctgcctcaggcg 1150
>ISShes10
Length = 1113
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 23 cgaggtgatgggcga 37
|||||||||||||||
Sbjct: 1015 cgaggtgatgggcga 1029
>ISPsy27
Length = 1596
Score = 30.2 bits (15), Expect = 1.3
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 142 gggcaggcggcgcattcgc 160
|||||||||||||| ||||
Sbjct: 1201 gggcaggcggcgcagtcgc 1183
>ISDeal1
Length = 2525
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 251 cagccgggccaggtc 265
|||||||||||||||
Sbjct: 343 cagccgggccaggtc 357
>ISKpn1
Length = 1445
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 83 ggtgatggagatggt 97
|||||||||||||||
Sbjct: 1047 ggtgatggagatggt 1061
>ISRtr5
Length = 2577
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 153 gcattcgccgccag 166
||||||||||||||
Sbjct: 957 gcattcgccgccag 944
>ISVpa4
Length = 1260
Score = 28.2 bits (14), Expect = 5.3
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 142 gggcaggcggcgcattcg 159
|||||| |||||||||||
Sbjct: 537 gggcagtcggcgcattcg 554
>ISKpn19
Length = 2851
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 85 tgatggagatggtc 98
||||||||||||||
Sbjct: 238 tgatggagatggtc 225
>ISNph6
Length = 1854
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 59 cgttcgccagacgc 72
||||||||||||||
Sbjct: 564 cgttcgccagacgc 551
>ISPfr3
Length = 1457
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 211 cggccgcggcggtg 224
||||||||||||||
Sbjct: 444 cggccgcggcggtg 431
>ISMdi12
Length = 1371
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 185 catcgtcatcaggc 198
||||||||||||||
Sbjct: 729 catcgtcatcaggc 716
>ISMex31
Length = 1091
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 23 cgaggtgatgggcg 36
||||||||||||||
Sbjct: 189 cgaggtgatgggcg 176
>ISBps2
Length = 1233
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 247 gcaccagccgggcc 260
||||||||||||||
Sbjct: 626 gcaccagccgggcc 613
>ISMdi7
Length = 2568
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 24 gaggtgatgggcga 37
||||||||||||||
Sbjct: 1657 gaggtgatgggcga 1644
>ISAcma19
Length = 1316
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 77 ctatgtggtgatgg 90
||||||||||||||
Sbjct: 414 ctatgtggtgatgg 427
>ISCARN110
Length = 2294
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 106 cgcacacgctgccg 119
||||||||||||||
Sbjct: 411 cgcacacgctgccg 424
>ISAzo22
Length = 1763
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 136 ctcagcgggcaggc 149
||||||||||||||
Sbjct: 1516 ctcagcgggcaggc 1529
>ISKrh2
Length = 1122
Score = 28.2 bits (14), Expect = 5.3
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 247 gcaccagccgggccaggt 264
||||||||||| ||||||
Sbjct: 292 gcaccagccggcccaggt 309
>ISCausp2
Length = 7915
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 21 cgcgaggtgatggg 34
||||||||||||||
Sbjct: 5322 cgcgaggtgatggg 5335
>ISEli1
Length = 1270
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 253 gccgggccaggtcg 266
||||||||||||||
Sbjct: 154 gccgggccaggtcg 141
>IS1661
Length = 1441
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 196 ggctggcattaccg 209
||||||||||||||
Sbjct: 1132 ggctggcattaccg 1145
>ISMt1
Length = 969
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 135 actcagcgggcagg 148
||||||||||||||
Sbjct: 215 actcagcgggcagg 202
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_174_length_269_cov_0.708333_ID_5518
(269 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISHwa30 | IS1595 | ISH4 | Haloquadratum walsbyi | 32 | 0.34 |
| ISMesp2 | IS1380 | Mesorhizobium sp. | 32 | 0.34 | |
| ISFal3B | IS5 | IS1031 | Frankia alni | 32 | 0.34 |
| ISFal3A | IS5 | IS1031 | Frankia alni | 32 | 0.34 |
| ISBsa1 | IS256 | Blastococcus saxobsidens | 30 | 1.3 | |
| ISRel8 | IS66 | Rhizobium etli | 30 | 1.3 | |
| ISAmi2 | IS5 | ISL2 | Actinosynnema mirum | 30 | 1.3 |
| ISRhsp1 | IS5 | IS5 | Rhodobacter sphaeroides | 30 | 1.3 |
| ISMch1 | IS3 | IS150 | Methylobacterium chloromethanicum | 30 | 1.3 |
| ISStma9 | IS3 | IS51 | Stenotrophomonas maltophilia | 30 | 1.3 |
| ISButh1 | IS3 | IS2 | Burkholderia thailandensis | 30 | 1.3 |
| ISRru1 | IS3 | IS51 | Rhodococcus ruber | 30 | 1.3 |
| ISRm9 | IS21 | - | Rhizobium meliloti | 30 | 1.3 |
| ISHti5 | IS1595 | ISH4 | Halorhabdus tiamatea | 28 | 5.3 |
| ISHarch7 | IS1595 | ISH4 | Halophilic archaeon | 28 | 5.3 |
| ISHarch6 | IS1595 | ISH4 | Halophilic archaeon | 28 | 5.3 |
| ISPsme1 | IS30 | Pseudomonas mendocina | 28 | 5.3 | |
| ISCoam1 | IS256 | IS1249 | Corynebacterium ammoniagenes | 28 | 5.3 |
| ISPa43 | Tn3 | Pseudomonas aeruginosa | 28 | 5.3 | |
| ISAzs33 | IS3 | IS150 | Azospirillum sp. | 28 | 5.3 |
| ISCef1 | IS1182 | Corynebacterium efficiens | 28 | 5.3 | |
| ISRssp11 | IS5 | Roseovarius sp. | 28 | 5.3 | |
| ISNha3 | IS1380 | Nitrobacter hamburgensis | 28 | 5.3 | |
| ISMex34 | IS200/IS605 | IS200 | Methylobacterium extorquens | 28 | 5.3 |
| ISMex30 | IS630 | Methylobacterium extorquens | 28 | 5.3 | |
| ISCARN79 | IS1380 | Metagenomic data from CARNOULES | 28 | 5.3 | |
| ISAzo18 | IS3 | IS150 | Azoarcus sp. | 28 | 5.3 |
| ISCARN48 | IS66 | Metagenomic data from CARNOULES | 28 | 5.3 | |
| ISMysp6 | IS481 | Mycobacterium sp. | 28 | 5.3 | |
| ISAfe12 | IS21 | Acidithiobacillus ferrooxidans | 28 | 5.3 | |
| ISNisp6 | IS66 | Nitrobacter sp. | 28 | 5.3 | |
| ISXau4 | IS66 | Xanthobacter autotrophicus | 28 | 5.3 | |
| ISAzca2 | IS66 | Azorhizobium caulinodans | 28 | 5.3 | |
| ISAli5 | IS3 | IS150 | Azospirillum lipoferum | 28 | 5.3 |
| ISRme9 | IS21 | Ralstonia metallidurans | 28 | 5.3 | |
| ISRme15 | IS3 | IS51 | Ralstonia metallidurans | 28 | 5.3 |
| ISStac1 | IS110 | IS1111 | Streptomyces aculeolatus | 28 | 5.3 |
| ISOgr2 | IS3 | IS2 | Oceanicola granulosus | 28 | 5.3 |
| ISXau3 | IS3 | IS51 | Xanthobacter autotrophicus | 28 | 5.3 |
| ISVei1 | IS3 | IS3 | Verminephrobacter eiseniae | 28 | 5.3 |
| ISRsp6 | IS4 | IS4Sa | Rhizobium sp. | 28 | 5.3 |
| ISMyma2 | IS1380 | Mycobacterium marinum | 28 | 5.3 | |
| ISAzo4 | IS21 | Azoarcus sp. | 28 | 5.3 | |
| ISPpa5 | IS66 | Paracoccus pantotrophus | 28 | 5.3 | |
| ISXo3 | IS5 | IS1031 | Xanthomonas oryzae | 28 | 5.3 |
| ISRj2 | IS3 | IS150 | Bradyrhizobium japonicum | 28 | 5.3 |
| IS868 | IS3 | IS51 | Agrobacterium tumefaciens | 28 | 5.3 |
>ISHwa30
Length = 945
Score = 32.2 bits (16), Expect = 0.34
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 196 tcgagtccgcgcgagc 211
||||||||||||||||
Sbjct: 497 tcgagtccgcgcgagc 512
>ISMesp2
Length = 1618
Score = 32.2 bits (16), Expect = 0.34
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 202 ccgcgcgagccggcgc 217
||||||||||||||||
Sbjct: 776 ccgcgcgagccggcgc 761
>ISFal3B
Length = 1130
Score = 32.2 bits (16), Expect = 0.34
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 203 cgcgcgagccggcgctgcgc 222
|||||||||||||| |||||
Sbjct: 802 cgcgcgagccggcggtgcgc 783
>ISFal3A
Length = 1087
Score = 32.2 bits (16), Expect = 0.34
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 203 cgcgcgagccggcgctgcgc 222
|||||||||||||| |||||
Sbjct: 802 cgcgcgagccggcggtgcgc 783
>ISBsa1
Length = 1464
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 213 ggcgctgcgcaaggc 227
|||||||||||||||
Sbjct: 877 ggcgctgcgcaaggc 891
>ISRel8
Length = 3226
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 114 tcgcctcgccgggcg 128
|||||||||||||||
Sbjct: 2010 tcgcctcgccgggcg 2024
>ISAmi2
Length = 942
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 214 gcgctgcgcaaggcg 228
|||||||||||||||
Sbjct: 421 gcgctgcgcaaggcg 435
>ISRhsp1
Length = 1486
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 219 gcgcaaggcgcgcgt 233
|||||||||||||||
Sbjct: 696 gcgcaaggcgcgcgt 682
>ISMch1
Length = 1294
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 249 cgctggtgaactggc 263
|||||||||||||||
Sbjct: 927 cgctggtgaactggc 913
>ISStma9
Length = 1234
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 248 tcgctggtgaactgg 262
|||||||||||||||
Sbjct: 940 tcgctggtgaactgg 926
>ISButh1
Length = 1330
Score = 30.2 bits (15), Expect = 1.3
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 67 gatgccgggctgatcgagg 85
|||||||||||| ||||||
Sbjct: 562 gatgccgggctggtcgagg 580
>ISRru1
Length = 1345
Score = 30.2 bits (15), Expect = 1.3
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 106 cgttactttcgcctcgccg 124
||||||||||| |||||||
Sbjct: 148 cgttactttcggctcgccg 130
>ISRm9
Length = 2798
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 70 gccgggctgatcgag 84
|||||||||||||||
Sbjct: 2077 gccgggctgatcgag 2091
>ISHti5
Length = 944
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 198 gagtccgcgcgagc 211
||||||||||||||
Sbjct: 516 gagtccgcgcgagc 503
>ISHarch7
Length = 945
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 198 gagtccgcgcgagc 211
||||||||||||||
Sbjct: 498 gagtccgcgcgagc 511
>ISHarch6
Length = 944
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 198 gagtccgcgcgagc 211
||||||||||||||
Sbjct: 498 gagtccgcgcgagc 511
>ISPsme1
Length = 1064
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 186 gcgcctgcgctcga 199
||||||||||||||
Sbjct: 303 gcgcctgcgctcga 290
>ISCoam1
Length = 1379
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 31 aagcaaaccatcag 44
||||||||||||||
Sbjct: 622 aagcaaaccatcag 609
>ISPa43
Length = 19903
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 67 gatgccgggctgat 80
||||||||||||||
Sbjct: 13933 gatgccgggctgat 13946
>ISAzs33
Length = 1265
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 250 gctggtgaactggc 263
||||||||||||||
Sbjct: 929 gctggtgaactggc 916
>ISCef1
Length = 1689
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 161 gcgtggcgtttcgc 174
||||||||||||||
Sbjct: 426 gcgtggcgtttcgc 439
>ISRssp11
Length = 1356
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 51 cctcgccaagttgc 64
||||||||||||||
Sbjct: 1231 cctcgccaagttgc 1218
>ISNha3
Length = 1631
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 202 ccgcgcgagccggc 215
||||||||||||||
Sbjct: 555 ccgcgcgagccggc 568
>ISMex34
Length = 658
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 185 tgcgcctgcgctcg 198
||||||||||||||
Sbjct: 415 tgcgcctgcgctcg 402
>ISMex30
Length = 1041
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 68 atgccgggctgatc 81
||||||||||||||
Sbjct: 266 atgccgggctgatc 279
>ISCARN79
Length = 1663
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 180 cgccgtgcgcctgc 193
||||||||||||||
Sbjct: 1193 cgccgtgcgcctgc 1206
>ISAzo18
Length = 1471
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 250 gctggtgaactggc 263
||||||||||||||
Sbjct: 947 gctggtgaactggc 934
>ISCARN48
Length = 2581
Score = 28.2 bits (14), Expect = 5.3
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 197 cgagtccgcgcgagccgg 214
|||||||||||| |||||
Sbjct: 104 cgagtccgcgcgcgccgg 121
>ISMysp6
Length = 1077
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 70 gccgggctgatcga 83
||||||||||||||
Sbjct: 259 gccgggctgatcga 272
>ISAfe12
Length = 2660
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 99 ccggcatcgttact 112
||||||||||||||
Sbjct: 1289 ccggcatcgttact 1302
>ISNisp6
Length = 2489
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 173 gcaccggcgccgtg 186
||||||||||||||
Sbjct: 1679 gcaccggcgccgtg 1666
>ISXau4
Length = 2458
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 173 gcaccggcgccgtg 186
||||||||||||||
Sbjct: 1648 gcaccggcgccgtg 1635
>ISAzca2
Length = 2458
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 173 gcaccggcgccgtg 186
||||||||||||||
Sbjct: 1648 gcaccggcgccgtg 1635
>ISAli5
Length = 1266
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 250 gctggtgaactggc 263
||||||||||||||
Sbjct: 929 gctggtgaactggc 916
>ISRme9
Length = 2688
Score = 28.2 bits (14), Expect = 5.3
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 163 gtggcgtttcgcaccggc 180
||||| ||||||||||||
Sbjct: 340 gtggcctttcgcaccggc 357
>ISRme15
Length = 1325
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 179 gcgccgtgcgcctg 192
||||||||||||||
Sbjct: 98 gcgccgtgcgcctg 111
>ISStac1
Length = 1484
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 113 ttcgcctcgccggg 126
||||||||||||||
Sbjct: 575 ttcgcctcgccggg 562
>ISOgr2
Length = 1299
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 1 accgagctggcggg 14
||||||||||||||
Sbjct: 1046 accgagctggcggg 1033
>ISXau3
Length = 1226
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 250 gctggtgaactggc 263
||||||||||||||
Sbjct: 932 gctggtgaactggc 919
>ISVei1
Length = 1214
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 68 atgccgggctgatc 81
||||||||||||||
Sbjct: 850 atgccgggctgatc 863
>ISRsp6
Length = 1277
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 180 cgccgtgcgcctgc 193
||||||||||||||
Sbjct: 1033 cgccgtgcgcctgc 1046
>ISMyma2
Length = 1679
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 69 tgccgggctgatcg 82
||||||||||||||
Sbjct: 1432 tgccgggctgatcg 1419
>ISAzo4
Length = 2757
Score = 28.2 bits (14), Expect = 5.3
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 190 ctgcgctcgagtccgcgc 207
||||||||||| ||||||
Sbjct: 2073 ctgcgctcgaggccgcgc 2056
>ISPpa5
Length = 2829
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 78 gatcgaggtggatg 91
||||||||||||||
Sbjct: 1627 gatcgaggtggatg 1640
>ISXo3
Length = 844
Score = 28.2 bits (14), Expect = 5.3
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 140 atttgctcgaatcgctca 157
||||||||||| ||||||
Sbjct: 92 atttgctcgaaccgctca 75
>ISRj2
Length = 1364
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 250 gctggtgaactggc 263
||||||||||||||
Sbjct: 945 gctggtgaactggc 932
>IS868
Length = 1321
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 88 gatgcacaaggccg 101
||||||||||||||
Sbjct: 965 gatgcacaaggccg 952
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_175_length_269_cov_0.90625_ID_5520
(269 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISPsp9 | IS1380 | Pseudomonas sp. | 36 | 0.022 | |
| TnXo19 | Tn3 | Xanthomonas oryzae | 34 | 0.086 | |
| ISGxy1 | IS3 | IS150 | Gluconacetobacter xylinus | 30 | 1.3 |
| ISGlo5 | IS5 | Geobacter lovleyi | 30 | 1.3 | |
| ISRhsp1 | IS5 | IS5 | Rhodobacter sphaeroides | 30 | 1.3 |
| ISGdi14 | IS3 | IS51 | Gluconacetobacter diazotrophicus | 30 | 1.3 |
| ISAzsp1 | IS3 | IS51 | Azotobacter sp. | 30 | 1.3 |
| ISSoc1 | IS200/IS605 | IS1341 | Synechococcus sp. | 28 | 5.3 |
| ISVra1 | IS256 | IS1249 | Veillonella ratti | 28 | 5.3 |
| ISMtsp9 | IS110 | Methylobacterium sp. | 28 | 5.3 | |
| ISPkr1 | IS21 | Paracoccus koreensis | 28 | 5.3 | |
| ISDth2 | ISNCY | ISDol1 | Desulfonatronospira thiodismutans | 28 | 5.3 |
| ISPfr12 | IS3 | IS51 | Propionibacterium freudenreichii | 28 | 5.3 |
| ISMch7 | IS701 | Methylobacterium chloromethanicum | 28 | 5.3 | |
| ISRop1 | IS1380 | Rhodococcus opacus | 28 | 5.3 | |
| ISUnCu12 | IS1380 | Uncultured marine microorganism | 28 | 5.3 | |
| ISPa7 | IS1182 | Pseudomonas aeruginosa | 28 | 5.3 | |
| ISMdi12 | IS110 | IS1111 | Methylobacterium dichloromethanicum | 28 | 5.3 |
| ISMdi13 | IS256 | Methylobacterium dichloromethanicum | 28 | 5.3 | |
| ISRce1 | ISAs1 | Rhodospirillum centenum | 28 | 5.3 | |
| ISAzo12 | IS21 | Azoarcus sp. | 28 | 5.3 | |
| ISCARN24 | IS21 | Metagenomic data from CARNOULES | 28 | 5.3 | |
| ISGdi7 | IS110 | IS1111 | Gluconacetobacter diazotrophicus | 28 | 5.3 |
| ISDge16 | IS5 | IS427 | Deinococcus geothermalis | 28 | 5.3 |
| ISCte4 | IS481 | Comamonas testosteroni | 28 | 5.3 | |
| ISPph1 | IS1634 | Pelodictyon phaeoclathratiforme | 28 | 5.3 | |
| IS1354 | IS256 | - | Methylobacterium dichloromethanicum | 28 | 5.3 |
>ISPsp9
Length = 1718
Score = 36.2 bits (18), Expect = 0.022
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 190 ctccagggcctccagcgt 207
||||||||||||||||||
Sbjct: 861 ctccagggcctccagcgt 844
>TnXo19
Length = 18767
Score = 34.2 bits (17), Expect = 0.086
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 168 gcgccagcagctggccg 184
|||||||||||||||||
Sbjct: 7272 gcgccagcagctggccg 7256
>ISGxy1
Length = 1313
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 71 gccagttccgccagc 85
|||||||||||||||
Sbjct: 161 gccagttccgccagc 147
>ISGlo5
Length = 1325
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 214 aaaatcagccggctg 228
|||||||||||||||
Sbjct: 1271 aaaatcagccggctg 1285
>ISRhsp1
Length = 1486
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 187 ctgctccagggcctc 201
|||||||||||||||
Sbjct: 1094 ctgctccagggcctc 1080
>ISGdi14
Length = 1318
Score = 30.2 bits (15), Expect = 1.3
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 187 ctgctccagggcctccagc 205
|||||||||||| ||||||
Sbjct: 916 ctgctccagggcgtccagc 898
>ISAzsp1
Length = 1309
Score = 30.2 bits (15), Expect = 1.3
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 187 ctgctccagggcctccagc 205
|||||||||||| ||||||
Sbjct: 913 ctgctccagggcatccagc 895
>ISSoc1
Length = 1291
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 43 aagcgcatcgttaa 56
||||||||||||||
Sbjct: 822 aagcgcatcgttaa 835
>ISVra1
Length = 1329
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 29 ttcacccgctgaaa 42
||||||||||||||
Sbjct: 1138 ttcacccgctgaaa 1151
>ISMtsp9
Length = 1456
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 102 catcaagcgcctga 115
||||||||||||||
Sbjct: 310 catcaagcgcctga 323
>ISPkr1
Length = 2469
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 172 cagcagctggccgc 185
||||||||||||||
Sbjct: 2153 cagcagctggccgc 2140
>ISDth2
Length = 1658
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 225 gctgggggtgatta 238
||||||||||||||
Sbjct: 1603 gctgggggtgatta 1590
>ISPfr12
Length = 1350
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 66 cattcgccagttcc 79
||||||||||||||
Sbjct: 76 cattcgccagttcc 63
>ISMch7
Length = 1412
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 163 cacccgcgccagca 176
||||||||||||||
Sbjct: 1197 cacccgcgccagca 1184
>ISRop1
Length = 4160
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 94 aaactgctcatcaa 107
||||||||||||||
Sbjct: 1813 aaactgctcatcaa 1826
>ISUnCu12
Length = 1597
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 170 gccagcagctggcc 183
||||||||||||||
Sbjct: 612 gccagcagctggcc 625
>ISPa7
Length = 1669
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 103 atcaagcgcctgaa 116
||||||||||||||
Sbjct: 1293 atcaagcgcctgaa 1306
>ISMdi12
Length = 1371
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 99 gctcatcaagcgcc 112
||||||||||||||
Sbjct: 324 gctcatcaagcgcc 337
>ISMdi13
Length = 1416
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 79 cgccagctcggcgg 92
||||||||||||||
Sbjct: 1012 cgccagctcggcgg 999
>ISRce1
Length = 1267
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 116 atggtcgggttggt 129
||||||||||||||
Sbjct: 666 atggtcgggttggt 653
>ISAzo12
Length = 3075
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 78 ccgccagctcggcg 91
||||||||||||||
Sbjct: 456 ccgccagctcggcg 443
>ISCARN24
Length = 2778
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 187 ctgctccagggcct 200
||||||||||||||
Sbjct: 1844 ctgctccagggcct 1831
>ISGdi7
Length = 1518
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 139 cgccatcgcgaaaa 152
||||||||||||||
Sbjct: 1479 cgccatcgcgaaaa 1492
>ISDge16
Length = 928
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 26 cgcttcacccgctg 39
||||||||||||||
Sbjct: 231 cgcttcacccgctg 244
>ISCte4
Length = 1019
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 102 catcaagcgcctga 115
||||||||||||||
Sbjct: 709 catcaagcgcctga 722
>ISPph1
Length = 1849
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 242 atggcggcaatctc 255
||||||||||||||
Sbjct: 294 atggcggcaatctc 281
>IS1354
Length = 1431
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 256 cgcgcgctggcggc 269
||||||||||||||
Sbjct: 530 cgcgcgctggcggc 543
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_176_length_269_cov_0.854167_ID_5522
(269 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISMyo1 | IS256 | Mycobacterium yongonense | 30 | 1.3 | |
| ISMno22 | IS110 | IS1111 | Methylobacterium nodulans | 30 | 1.3 |
| IS892 | ISNCY | IS892 | Anabaena sp. | 30 | 1.3 |
| ISNamo21 | IS200/IS605 | IS1341 | Natronomonas moolapensis | 28 | 5.3 |
| ISBj11 | IS21 | Bradyrhizobium japonicum | 28 | 5.3 | |
| ISOcan1 | IS5 | IS903 | Ochrobactrum anthropi | 28 | 5.3 |
| ISHwa4 | IS701 | Haloquadratum walsbyi | 28 | 5.3 | |
| ISMhu1 | IS1182 | Methanospirillum hungatei | 28 | 5.3 | |
| ISStma6 | IS110 | Stenotrophomonas maltophilia | 28 | 5.3 | |
| ISCARN58 | IS21 | Metagenomic data from CARNOULES | 28 | 5.3 | |
| ISAli9 | IS5 | IS427 | Azospirillum lipoferum | 28 | 5.3 |
| ISLxc1 | IS21 | Leifsonia xyli | 28 | 5.3 | |
| ISBlo5 | IS256 | Bifidobacterium longum | 28 | 5.3 | |
| IS406 | IS256 | - | Burkholderia cepacia | 28 | 5.3 |
>ISMyo1
Length = 1472
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 23 cgagatcgccgactt 37
|||||||||||||||
Sbjct: 603 cgagatcgccgactt 589
>ISMno22
Length = 1426
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 229 ctgaccgcactcgcc 243
|||||||||||||||
Sbjct: 673 ctgaccgcactcgcc 687
>IS892
Length = 1675
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 129 ttcggcgatgtcaaa 143
|||||||||||||||
Sbjct: 234 ttcggcgatgtcaaa 248
>ISNamo21
Length = 1836
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 22 tcgagatcgccgac 35
||||||||||||||
Sbjct: 1239 tcgagatcgccgac 1226
>ISBj11
Length = 2649
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 230 tgaccgcactcgcc 243
||||||||||||||
Sbjct: 1985 tgaccgcactcgcc 1998
>ISOcan1
Length = 1135
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 50 caaccagaagactg 63
||||||||||||||
Sbjct: 984 caaccagaagactg 997
>ISHwa4
Length = 1285
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 18 tccatcgagatcgc 31
||||||||||||||
Sbjct: 1219 tccatcgagatcgc 1206
>ISMhu1
Length = 1742
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 104 tttccagactctct 117
||||||||||||||
Sbjct: 805 tttccagactctct 792
>ISStma6
Length = 1093
Score = 28.2 bits (14), Expect = 5.3
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 64 gtgccgccaagatcgatc 81
|||||||||||| |||||
Sbjct: 422 gtgccgccaagaccgatc 439
>ISCARN58
Length = 2436
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 128 gttcggcgatgtca 141
||||||||||||||
Sbjct: 1718 gttcggcgatgtca 1705
>ISAli9
Length = 846
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 26 gatcgccgactttg 39
||||||||||||||
Sbjct: 154 gatcgccgactttg 141
>ISLxc1
Length = 3533
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 172 cgcctccaacacac 185
||||||||||||||
Sbjct: 3451 cgcctccaacacac 3464
>ISBlo5
Length = 1366
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 77 cgatctcgtcggcc 90
||||||||||||||
Sbjct: 248 cgatctcgtcggcc 235
>IS406
Length = 1367
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 66 gccgccaagatcga 79
||||||||||||||
Sbjct: 252 gccgccaagatcga 265
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_177_length_268_cov_0.764398_ID_5524
(268 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISNph9 | IS200/IS605 | IS1341 | Natronomonas pharaonis | 32 | 0.34 |
| ISAli20 | Tn3 | Azospirillum lipoferum | 30 | 1.3 | |
| ISPa25 | IS110 | IS1111 | Pseudomonas aeruginosa | 30 | 1.3 |
| ISAs24 | IS110 | IS1111 | Aeromonas salmonicida | 28 | 5.3 |
| ISAs26 | IS200/IS605 | Aeromonas salmonicida | 28 | 5.3 | |
| ISAba22 | IS3 | IS3 | Acinetobacter baumannii | 28 | 5.3 |
| ISMno8 | IS1182 | Methylobacterium nodulans | 28 | 5.3 | |
| ISFsp15 | IS1380 | Frankia sp. | 28 | 5.3 | |
| ISFsp14 | IS1380 | Frankia sp. | 28 | 5.3 | |
| ISMex38 | Tn3 | Methylobacterium extorquens | 28 | 5.3 | |
| ISMex36 | IS1182 | Methylobacterium extorquens | 28 | 5.3 | |
| IS1553 | IS256 | Mycobacterium tuberculosis | 28 | 5.3 | |
| ISKpn7 | IS21 | Klebsiella pneumoniae | 28 | 5.3 | |
| ISRme12 | IS3 | IS150 | Ralstonia metallidurans | 28 | 5.3 |
| ISRm12 | IS5 | IS5 | Sinorhizobium meliloti | 28 | 5.3 |
| ISPa45 | IS4 | IS4 | Pseudomonas aeruginosa | 28 | 5.3 |
>ISNph9
Length = 1462
Score = 32.2 bits (16), Expect = 0.34
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 215 gaccgcttcaaacagg 230
||||||||||||||||
Sbjct: 271 gaccgcttcaaacagg 286
>ISAli20
Length = 3828
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 221 ttcaaacagggccgg 235
|||||||||||||||
Sbjct: 3475 ttcaaacagggccgg 3489
>ISPa25
Length = 1410
Score = 30.2 bits (15), Expect = 1.3
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 115 cgcccaccgcatggccgaa 133
||||||||||| |||||||
Sbjct: 1316 cgcccaccgcaaggccgaa 1334
>ISAs24
Length = 1394
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 77 gattgccgggctgg 90
||||||||||||||
Sbjct: 659 gattgccgggctgg 672
>ISAs26
Length = 1798
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 80 tgccgggctggcgt 93
||||||||||||||
Sbjct: 922 tgccgggctggcgt 935
>ISAba22
Length = 1274
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 125 atggccgaagactt 138
||||||||||||||
Sbjct: 1200 atggccgaagactt 1213
>ISMno8
Length = 1466
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 13 ggggccgcccctgc 26
||||||||||||||
Sbjct: 801 ggggccgcccctgc 788
>ISFsp15
Length = 1695
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 157 aggcgaggaaggcg 170
||||||||||||||
Sbjct: 854 aggcgaggaaggcg 841
>ISFsp14
Length = 1696
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 157 aggcgaggaaggcg 170
||||||||||||||
Sbjct: 854 aggcgaggaaggcg 841
>ISMex38
Length = 3841
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 121 ccgcatggccgaag 134
||||||||||||||
Sbjct: 2676 ccgcatggccgaag 2689
>ISMex36
Length = 1467
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 13 ggggccgcccctgc 26
||||||||||||||
Sbjct: 801 ggggccgcccctgc 788
>IS1553
Length = 1406
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 196 tcgaggcgatgggt 209
||||||||||||||
Sbjct: 489 tcgaggcgatgggt 502
>ISKpn7
Length = 1956
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 158 ggcgaggaaggcgc 171
||||||||||||||
Sbjct: 389 ggcgaggaaggcgc 376
>ISRme12
Length = 1454
Score = 28.2 bits (14), Expect = 5.3
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 200 ggcgatgggtacgccgac 217
|||||| |||||||||||
Sbjct: 678 ggcgataggtacgccgac 695
>ISRm12
Length = 1481
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 19 gcccctgcggcccg 32
||||||||||||||
Sbjct: 471 gcccctgcggcccg 458
>ISPa45
Length = 1637
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 23 ctgcggcccgggcg 36
||||||||||||||
Sbjct: 1333 ctgcggcccgggcg 1320
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_178_length_268_cov_0.759162_ID_5526
(268 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISAzca2 | IS66 | Azorhizobium caulinodans | 32 | 0.34 | |
| ISGdi5 | IS630 | Gluconacetobacter diazotrophicus | 32 | 0.34 | |
| ISRsp12 | Tn3 | Rhizhobium sp. | 30 | 1.3 | |
| ISSpma2 | IS256 | Sphingopyxis macrogoltabida | 30 | 1.3 | |
| ISMav8 | IS1380 | Mycobacterium avium | 30 | 1.3 | |
| ISMsm11 | IS1380 | Mycobacterium smegmatis | 30 | 1.3 | |
| ISAZo16 | IS21 | Azoarcus sp. | 30 | 1.3 | |
| ISRso18 | IS5 | IS5 | Ralstonia solanacearum | 30 | 1.3 |
| IS219 | IS1380 | - | Mycobacterium fortuitum | 30 | 1.3 |
| IS1405 | IS5 | IS5 | Ralstonia solanacearum | 30 | 1.3 |
| ISRel26 | ISNCY | IS1202 | Rhizobium etli | 28 | 5.3 |
| ISNpe24 | IS66 | ISBst12 | Natrinema pellirubrum | 28 | 5.3 |
| ISMama1 | IS256 | Magnetococcus marinus | 28 | 5.3 | |
| ISRssp3 | IS6 | Roseovarius sp. | 28 | 5.3 | |
| ISMch3 | IS3 | IS150 | Methylobacterium chloromethanicum | 28 | 5.3 |
| ISMav6 | IS110 | Mycobacterium avium | 28 | 5.3 | |
| ISMex19 | IS5 | IS427 | Methylobacterium extorquens | 28 | 5.3 |
| ISCARN104 | IS66 | Metagenomic data from CARNOULES | 28 | 5.3 | |
| ISCARN87 | IS630 | Metagenomic data from CARNOULES | 28 | 5.3 | |
| ISAzo14 | IS1634 | Azoarcus sp. | 28 | 5.3 | |
| ISAzo12 | IS21 | Azoarcus sp. | 28 | 5.3 | |
| ISThsp1 | IS1182 | Thiomonas sp. | 28 | 5.3 | |
| ISRfsp1 | IS66 | ISBst12 | Roseiflexus sp. | 28 | 5.3 |
| ISNwi4 | IS1595 | ISNha5 | Nitrobacter winogradskyi | 28 | 5.3 |
| ISCmi3 | IS30 | Clavibacter michiganensis | 28 | 5.3 | |
| ISMfl1 | IS4 | IS4 | Mycobacterium flavescens | 28 | 5.3 |
| ISXo5 | IS1595 | IS1595 | Xanthomonas oryzae | 28 | 5.3 |
| ISPpu12 | ISL3 | Pseudomonas putida | 28 | 5.3 | |
| ISH10 | IS66 | ISBst12 | Halobacterium sp | 28 | 5.3 |
| IS902 | IS110 | - | Mycobacterium avium | 28 | 5.3 |
| IS1513 | IS30 | - | Corynebacterium striatum | 28 | 5.3 |
| IS1294 | IS91 | - | Escherichia coli | 28 | 5.3 |
| IS1164 | IS256 | - | Rhodococcus rhodochrous | 28 | 5.3 |
>ISAzca2
Length = 2458
Score = 32.2 bits (16), Expect = 0.34
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 235 caccaagaccgggcag 250
||||||||||||||||
Sbjct: 1668 caccaagaccgggcag 1683
>ISGdi5
Length = 1160
Score = 32.2 bits (16), Expect = 0.34
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 95 tcctatgtcagcgccc 110
||||||||||||||||
Sbjct: 510 tcctatgtcagcgccc 525
>ISRsp12
Length = 3701
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 177 tcgccacgctgcgca 191
|||||||||||||||
Sbjct: 3214 tcgccacgctgcgca 3200
>ISSpma2
Length = 1422
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 215 gcgccgaacaaggtc 229
|||||||||||||||
Sbjct: 806 gcgccgaacaaggtc 792
>ISMav8
Length = 2064
Score = 30.2 bits (15), Expect = 1.3
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 123 acgagctgggcatcatcga 141
||||| |||||||||||||
Sbjct: 245 acgagatgggcatcatcga 227
>ISMsm11
Length = 1658
Score = 30.2 bits (15), Expect = 1.3
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 123 acgagctgggcatcatcga 141
||||| |||||||||||||
Sbjct: 178 acgagatgggcatcatcga 160
>ISAZo16
Length = 2485
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 106 cgccctggtcgcggc 120
|||||||||||||||
Sbjct: 2161 cgccctggtcgcggc 2147
>ISRso18
Length = 1188
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 136 catcgacaagcgcga 150
|||||||||||||||
Sbjct: 460 catcgacaagcgcga 446
>IS219
Length = 1654
Score = 30.2 bits (15), Expect = 1.3
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 123 acgagctgggcatcatcga 141
||||| |||||||||||||
Sbjct: 178 acgagatgggcatcatcga 160
>IS1405
Length = 1174
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 136 catcgacaagcgcga 150
|||||||||||||||
Sbjct: 729 catcgacaagcgcga 743
>ISRel26
Length = 1634
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 8 agctatttcgaggc 21
||||||||||||||
Sbjct: 640 agctatttcgaggc 653
>ISNpe24
Length = 1605
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 246 ggcagaaggtgaac 259
||||||||||||||
Sbjct: 1132 ggcagaaggtgaac 1145
>ISMama1
Length = 1425
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 184 gctgcgcaatctgg 197
||||||||||||||
Sbjct: 1008 gctgcgcaatctgg 1021
>ISRssp3
Length = 810
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 64 ctatccgtcgacga 77
||||||||||||||
Sbjct: 630 ctatccgtcgacga 643
>ISMch3
Length = 1510
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 157 ccgccgggccacgc 170
||||||||||||||
Sbjct: 141 ccgccgggccacgc 154
>ISMav6
Length = 1472
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 168 cgctgctgatcgcc 181
||||||||||||||
Sbjct: 426 cgctgctgatcgcc 439
>ISMex19
Length = 849
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 40 ggggctggtcaacg 53
||||||||||||||
Sbjct: 374 ggggctggtcaacg 387
>ISCARN104
Length = 2483
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 161 cgggccacgctgct 174
||||||||||||||
Sbjct: 1939 cgggccacgctgct 1926
>ISCARN87
Length = 1142
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 236 accaagaccgggca 249
||||||||||||||
Sbjct: 304 accaagaccgggca 317
>ISAzo14
Length = 1925
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 237 ccaagaccgggcag 250
||||||||||||||
Sbjct: 1200 ccaagaccgggcag 1213
>ISAzo12
Length = 3075
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 148 cgacttcgaccgcc 161
||||||||||||||
Sbjct: 2042 cgacttcgaccgcc 2055
>ISThsp1
Length = 1539
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 142 caagcgcgacttcg 155
||||||||||||||
Sbjct: 809 caagcgcgacttcg 822
>ISRfsp1
Length = 1503
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 177 tcgccacgctgcgc 190
||||||||||||||
Sbjct: 1437 tcgccacgctgcgc 1450
>ISNwi4
Length = 3671
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 153 tcgaccgccgggcc 166
||||||||||||||
Sbjct: 2384 tcgaccgccgggcc 2371
>ISCmi3
Length = 1459
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 102 tcagcgccctggtc 115
||||||||||||||
Sbjct: 1165 tcagcgccctggtc 1152
>ISMfl1
Length = 1457
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 147 gcgacttcgaccgc 160
||||||||||||||
Sbjct: 1075 gcgacttcgaccgc 1062
>ISXo5
Length = 1058
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 147 gcgacttcgaccgc 160
||||||||||||||
Sbjct: 798 gcgacttcgaccgc 785
>ISPpu12
Length = 3372
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 105 gcgccctggtcgcg 118
||||||||||||||
Sbjct: 1378 gcgccctggtcgcg 1391
>ISH10
Length = 1584
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 246 ggcagaaggtgaac 259
||||||||||||||
Sbjct: 1111 ggcagaaggtgaac 1124
>IS902
Length = 1470
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 168 cgctgctgatcgcc 181
||||||||||||||
Sbjct: 425 cgctgctgatcgcc 438
>IS1513
Length = 1705
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 72 cgacgacactgtgg 85
||||||||||||||
Sbjct: 770 cgacgacactgtgg 757
>IS1294
Length = 1689
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 21 ccgggttccagccc 34
||||||||||||||
Sbjct: 749 ccgggttccagccc 736
>IS1164
Length = 1430
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 106 cgccctggtcgcgg 119
||||||||||||||
Sbjct: 679 cgccctggtcgcgg 692
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_179_length_268_cov_0.764398_ID_5528
(268 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISMal1 | ISKra4 | ISAzba1 | Mesorhizobium alhagi | 34 | 0.086 |
| ISSoEn3 | IS21 | Primary endosymbiont of Sitophilus oryzae | 32 | 0.34 | |
| ISCARN65 | IS21 | Metagenomic data from CARNOULES | 30 | 1.3 | |
| ISAca1 | IS3 | IS407 | Acinetobacter calcoaceticus | 30 | 1.3 |
| ISHla19 | IS200/IS605 | Halorubrum lacusprofundi | 28 | 5.3 | |
| ISNamo19 | IS200/IS605 | IS605 | Natronomonas moolapensis | 28 | 5.3 |
| ISNamo17 | IS200/IS605 | IS605 | Natronomonas moolapensis | 28 | 5.3 |
| ISHhu2 | IS200/IS605 | Halobacterium hubeiense | 28 | 5.3 | |
| ISH35 | IS200/IS605 | Halobacterium salinarum | 28 | 5.3 | |
| ISNpe10 | IS200/IS605 | Natrinema pellirubrum | 28 | 5.3 | |
| ISMama1 | IS256 | Magnetococcus marinus | 28 | 5.3 | |
| ISHal1 | IS200/IS605 | Haloferax alexandrinus | 28 | 5.3 | |
| ISGpo1 | IS256 | Gordonia polyisoprenivorans | 28 | 5.3 | |
| ISAzs5 | ISAs1 | Azospirillum sp. | 28 | 5.3 | |
| ISRssp12 | IS1182 | Roseovarius sp. | 28 | 5.3 | |
| ISSpal2 | IS5 | Sphingopyxis alaskensis | 28 | 5.3 | |
| ISStau6 | ISAzo13 | Stigmatella aurantiaca | 28 | 5.3 | |
| ISBce17 | IS607 | Bacillus cereus | 28 | 5.3 | |
| ISAar20 | ISL3 | Arthrobacter arilaitensis | 28 | 5.3 | |
| ISAnsp13 | ISAs1 | Anaeromyxobacter sp. | 28 | 5.3 | |
| ISThsp9 | Tn3 | Thiomonas sp. | 28 | 5.3 | |
| ISApr4 | IS1595 | ISNwi1 | Alpha proteobacterium | 28 | 5.3 |
| ISRhosp3 | IS701 | Rhodococcus sp. | 28 | 5.3 | |
| ISPa1635 | IS4 | IS4 | Pseudomonas aeruginosa | 28 | 5.3 |
| IS1629 | ISAs1 | - | Streptomyces sp. | 28 | 5.3 |
| IS1500B | IS3 | IS3 | Leptospira interrogans | 28 | 5.3 |
| IS1187 | IS982 | - | Bacteroides fragilis | 28 | 5.3 |
>ISMal1
Length = 2308
Score = 34.2 bits (17), Expect = 0.086
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 106 cggcaccacgacgcgcc 122
|||||||||||||||||
Sbjct: 209 cggcaccacgacgcgcc 193
>ISSoEn3
Length = 2600
Score = 32.2 bits (16), Expect = 0.34
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 224 atcagctcccactcgggcaa 243
||||| ||||||||||||||
Sbjct: 1200 atcaggtcccactcgggcaa 1181
>ISCARN65
Length = 2433
Score = 30.2 bits (15), Expect = 1.3
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 166 gcgttgcaggcgacgggcc 184
|||||||||||| ||||||
Sbjct: 1292 gcgttgcaggcgccgggcc 1310
>ISAca1
Length = 1186
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 43 cttgttcagttgccc 57
|||||||||||||||
Sbjct: 935 cttgttcagttgccc 921
>ISHla19
Length = 1851
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 167 cgttgcaggcgacg 180
||||||||||||||
Sbjct: 560 cgttgcaggcgacg 573
>ISNamo19
Length = 1897
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 167 cgttgcaggcgacg 180
||||||||||||||
Sbjct: 559 cgttgcaggcgacg 572
>ISNamo17
Length = 1836
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 90 actcacgaagacgc 103
||||||||||||||
Sbjct: 537 actcacgaagacgc 550
>ISHhu2
Length = 1846
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 167 cgttgcaggcgacg 180
||||||||||||||
Sbjct: 555 cgttgcaggcgacg 568
>ISH35
Length = 1836
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 90 actcacgaagacgc 103
||||||||||||||
Sbjct: 537 actcacgaagacgc 550
>ISNpe10
Length = 1835
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 90 actcacgaagacgc 103
||||||||||||||
Sbjct: 537 actcacgaagacgc 550
>ISMama1
Length = 1425
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 154 accaatcagcaggc 167
||||||||||||||
Sbjct: 1039 accaatcagcaggc 1052
>ISHal1
Length = 1846
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 167 cgttgcaggcgacg 180
||||||||||||||
Sbjct: 555 cgttgcaggcgacg 568
>ISGpo1
Length = 1432
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 217 ggcttcgatcagct 230
||||||||||||||
Sbjct: 1267 ggcttcgatcagct 1254
>ISAzs5
Length = 1333
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 165 ggcgttgcaggcga 178
||||||||||||||
Sbjct: 661 ggcgttgcaggcga 648
>ISRssp12
Length = 1554
Score = 28.2 bits (14), Expect = 5.3
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 9 ccgcgttccagtcgtcct 26
|||||| |||||||||||
Sbjct: 587 ccgcgtcccagtcgtcct 570
>ISSpal2
Length = 1314
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 168 gttgcaggcgacgg 181
||||||||||||||
Sbjct: 1140 gttgcaggcgacgg 1127
>ISStau6
Length = 1304
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 174 ggcgacgggcctct 187
||||||||||||||
Sbjct: 209 ggcgacgggcctct 222
>ISBce17
Length = 1966
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 41 aacttgttcagttg 54
||||||||||||||
Sbjct: 707 aacttgttcagttg 694
>ISAar20
Length = 1449
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 158 atcagcaggcgttg 171
||||||||||||||
Sbjct: 590 atcagcaggcgttg 577
>ISAnsp13
Length = 1367
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 172 caggcgacgggcct 185
||||||||||||||
Sbjct: 1256 caggcgacgggcct 1243
>ISThsp9
Length = 6215
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 165 ggcgttgcaggcga 178
||||||||||||||
Sbjct: 3813 ggcgttgcaggcga 3800
>ISApr4
Length = 3691
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 176 cgacgggcctcttc 189
||||||||||||||
Sbjct: 1034 cgacgggcctcttc 1047
>ISRhosp3
Length = 1349
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 160 cagcaggcgttgca 173
||||||||||||||
Sbjct: 238 cagcaggcgttgca 225
>ISPa1635
Length = 1635
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 243 aggggtaaatgcac 256
||||||||||||||
Sbjct: 497 aggggtaaatgcac 484
>IS1629
Length = 1462
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 93 cacgaagacgcggc 106
||||||||||||||
Sbjct: 712 cacgaagacgcggc 699
>IS1500B
Length = 1235
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 223 gatcagctcccact 236
||||||||||||||
Sbjct: 214 gatcagctcccact 227
>IS1187
Length = 1028
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 127 gccatccatttcca 140
||||||||||||||
Sbjct: 426 gccatccatttcca 413
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_180_length_267_cov_0.768421_ID_5530
(267 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISMno20 | IS110 | IS1111 | Methylobacterium nodulans | 30 | 1.3 |
| ISMysp7 | IS256 | Mycobacterium sp. | 30 | 1.3 | |
| ISMdi12 | IS110 | IS1111 | Methylobacterium dichloromethanicum | 30 | 1.3 |
| ISMsi1 | IS21 | Methylocella silvestris | 30 | 1.3 | |
| ISPpa2 | IS5 | IS427 | Paracoccus pantotrophus | 30 | 1.3 |
| ISPsy13 | IS3 | IS3 | Pseudomonas syringae | 30 | 1.3 |
| ISAs2 | IS30 | - | Aeromonas salmonicida | 30 | 1.3 |
| IS4811 | IS5 | IS1031 | Streptomyces lividans | 30 | 1.3 |
| IS1421 | IS5 | IS427 | Ralstonia solanacearum | 30 | 1.3 |
| ISRsp12 | Tn3 | Rhizhobium sp. | 28 | 5.3 | |
| ISAhy2 | IS630 | Aeromonas hydrophila | 28 | 5.3 | |
| ISThio1 | ISKra4 | ISKra4 | Thiorhodovibrio sp. | 28 | 5.3 |
| ISTni1 | ISKra4 | ISKra4 | Thioalkalivibrio nitratireducens | 28 | 5.3 |
| ISMtsp19 | IS701 | Methylobacterium sp. | 28 | 5.3 | |
| ISPfr11 | IS3 | IS3 | Propionibacterium freudenreichii | 28 | 5.3 |
| ISMex30 | IS630 | Methylobacterium extorquens | 28 | 5.3 | |
| ISMex38 | Tn3 | Methylobacterium extorquens | 28 | 5.3 | |
| ISCARN27 | IS256 | Metagenomic data from CARNOULES | 28 | 5.3 | |
| ISCARN26 | IS110 | Metagenomic data from CARNOULES | 28 | 5.3 | |
| ISPsy25 | IS630 | Pseudomonas syringae | 28 | 5.3 | |
| ISRsp3 | IS21 | Rhizobium sp. | 28 | 5.3 | |
| ISXca4 | IS1595 | IS1595 | Xanthomonas campestris | 28 | 5.3 |
| ISGbe1 | IS3 | IS407 | Granulibacter bethesdensis | 28 | 5.3 |
| ISRpa2 | IS3 | IS407 | Rhodopseudomonas palustris | 28 | 5.3 |
| ISRm16 | IS4 | IS4Sa | Sinorhizobium meliloti | 28 | 5.3 |
| ISAzo7 | IS1595 | ISSod11 | Azoarcus sp. | 28 | 5.3 |
| ISMba12 | IS1634 | Methanosarcina barkeri | 28 | 5.3 | |
| ISMma3 | IS1634 | Methanosarcina mazei | 28 | 5.3 | |
| ISMac5 | IS1634 | Methanosarcina acetivorans | 28 | 5.3 | |
| ISBcen1 | IS110 | IS1111 | Burkholderia cenocepacia | 28 | 5.3 |
| ISXo2 | IS1595 | IS1595 | Xanthomomas oryzae | 28 | 5.3 |
| IS1021 | IS5 | IS5 | Ralstonia solanacearum | 28 | 5.3 |
| IS1001 | ISL3 | - | Bordetella parapertussis | 28 | 5.3 |
>ISMno20
Length = 1798
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 148 cgcatcggcgcaacc 162
|||||||||||||||
Sbjct: 1027 cgcatcggcgcaacc 1041
>ISMysp7
Length = 1397
Score = 30.2 bits (15), Expect = 1.3
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 41 gcaagatggccaacgcgct 59
|||||||||||| ||||||
Sbjct: 945 gcaagatggccaccgcgct 963
>ISMdi12
Length = 1371
Score = 30.2 bits (15), Expect = 1.3
Identities = 21/23 (91%)
Strand = Plus / Plus
Query: 125 tcgtggccatgcaggcctgcgcc 147
|||| |||||| |||||||||||
Sbjct: 224 tcgtcgccatggaggcctgcgcc 246
>ISMsi1
Length = 2307
Score = 30.2 bits (15), Expect = 1.3
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 69 cggcgtcgccaagggcgac 87
|||||||||||| ||||||
Sbjct: 1263 cggcgtcgccaatggcgac 1281
>ISPpa2
Length = 832
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 76 gccaagggcgaccgc 90
|||||||||||||||
Sbjct: 464 gccaagggcgaccgc 478
>ISPsy13
Length = 1232
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 46 atggccaacgcgctc 60
|||||||||||||||
Sbjct: 325 atggccaacgcgctc 339
>ISAs2
Length = 1084
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 99 ctatctgccgatgtc 113
|||||||||||||||
Sbjct: 319 ctatctgccgatgtc 333
>IS4811
Length = 5396
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 48 ggccaacgcgctcaa 62
|||||||||||||||
Sbjct: 3617 ggccaacgcgctcaa 3603
>IS1421
Length = 864
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 164 actcggtggtgttcg 178
|||||||||||||||
Sbjct: 512 actcggtggtgttcg 526
>ISRsp12
Length = 3701
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 38 tcagcaagatggcc 51
||||||||||||||
Sbjct: 2618 tcagcaagatggcc 2631
>ISAhy2
Length = 1158
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 39 cagcaagatggcca 52
||||||||||||||
Sbjct: 214 cagcaagatggcca 201
>ISThio1
Length = 1756
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 18 caaggatctgctct 31
||||||||||||||
Sbjct: 942 caaggatctgctct 929
>ISTni1
Length = 2377
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 249 cggccagttccgtg 262
||||||||||||||
Sbjct: 218 cggccagttccgtg 205
>ISMtsp19
Length = 1486
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 62 agagcgtcggcgtc 75
||||||||||||||
Sbjct: 311 agagcgtcggcgtc 298
>ISPfr11
Length = 1315
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 225 cgcggcagccctga 238
||||||||||||||
Sbjct: 1252 cgcggcagccctga 1265
>ISMex30
Length = 1041
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 222 cagcgcggcagccc 235
||||||||||||||
Sbjct: 896 cagcgcggcagccc 909
>ISMex38
Length = 3841
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 145 gcccgcatcggcgc 158
||||||||||||||
Sbjct: 2503 gcccgcatcggcgc 2516
>ISCARN27
Length = 1356
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 48 ggccaacgcgctca 61
||||||||||||||
Sbjct: 421 ggccaacgcgctca 408
>ISCARN26
Length = 1214
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 125 tcgtggccatgcag 138
||||||||||||||
Sbjct: 656 tcgtggccatgcag 669
>ISPsy25
Length = 1171
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 217 agctccagcgcggc 230
||||||||||||||
Sbjct: 404 agctccagcgcggc 391
>ISRsp3
Length = 2489
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 14 cctacaaggatctg 27
||||||||||||||
Sbjct: 1832 cctacaaggatctg 1845
>ISXca4
Length = 1072
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 217 agctccagcgcggc 230
||||||||||||||
Sbjct: 411 agctccagcgcggc 398
>ISGbe1
Length = 1269
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 64 agcgtcggcgtcgc 77
||||||||||||||
Sbjct: 363 agcgtcggcgtcgc 350
>ISRpa2
Length = 1265
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 210 tatcgaaagctcca 223
||||||||||||||
Sbjct: 1169 tatcgaaagctcca 1182
>ISRm16
Length = 1299
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 201 gcgtgatcgtatcg 214
||||||||||||||
Sbjct: 920 gcgtgatcgtatcg 907
>ISAzo7
Length = 1044
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 129 ggccatgcaggcct 142
||||||||||||||
Sbjct: 138 ggccatgcaggcct 125
>ISMba12
Length = 1729
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 4 accaaggtgaccta 17
||||||||||||||
Sbjct: 139 accaaggtgaccta 126
>ISMma3
Length = 1719
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 4 accaaggtgaccta 17
||||||||||||||
Sbjct: 138 accaaggtgaccta 125
>ISMac5
Length = 1719
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 4 accaaggtgaccta 17
||||||||||||||
Sbjct: 138 accaaggtgaccta 125
>ISBcen1
Length = 1357
Score = 28.2 bits (14), Expect = 5.3
Identities = 20/22 (90%)
Strand = Plus / Plus
Query: 126 cgtggccatgcaggcctgcgcc 147
||||| |||| |||||||||||
Sbjct: 218 cgtggtcatggaggcctgcgcc 239
>ISXo2
Length = 1070
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 9 ggtgacctacaagg 22
||||||||||||||
Sbjct: 425 ggtgacctacaagg 438
>IS1021
Length = 1209
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 125 tcgtggccatgcag 138
||||||||||||||
Sbjct: 731 tcgtggccatgcag 718
>IS1001
Length = 1306
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 134 tgcaggcctgcgcc 147
||||||||||||||
Sbjct: 416 tgcaggcctgcgcc 403
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_181_length_267_cov_0.768421_ID_5532
(267 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISPa42 | Tn3 | Pseudomonas aeruginosa | 40 | 0.001 | |
| ISAfe13 | ISKra4 | ISAzba1 | Acidithiobacillus ferrivorans | 34 | 0.085 |
| ISSpu5 | IS21 | Shewanella putrefaciens | 34 | 0.085 | |
| ISNagr10 | IS1595 | ISH4 | Natronobacterium gregoryi | 32 | 0.34 |
| ISNpe21 | IS1595 | ISH4 | Natrinema pellirubrum | 32 | 0.34 |
| ISNpe7 | IS1595 | ISH4 | Natrinema pellirubrum | 32 | 0.34 |
| ISShes11 | Tn3 | Shewanella sp. | 32 | 0.34 | |
| ISAzo14 | IS1634 | Azoarcus sp. | 32 | 0.34 | |
| ISNph2 | IS1595 | ISH4 | Natronomonas pharaonis | 32 | 0.34 |
| ISRso9 | IS5 | IS5 | Ralstonia solanacearum | 32 | 0.34 |
| IS1252 | IS30 | - | Enterococcus sp | 32 | 0.34 |
| ISMlu11 | IS256 | Micrococcus luteus | 30 | 1.3 | |
| ISPeth3 | IS256 | Pelotomaculum thermopropionicum | 30 | 1.3 | |
| ISAzs30 | IS21 | Azospirillum sp. | 30 | 1.3 | |
| ISDeac1 | IS1380 | Delftia acidovorans | 30 | 1.3 | |
| ISCc5 | IS1182 | Caulobacter crescentus | 30 | 1.3 | |
| ISAau1 | IS3 | IS407 | Arthrobacter aurescens | 30 | 1.3 |
| ISVer2 | ISAs1 | Bacterium Ellin514 | 30 | 1.3 | |
| ISDge6 | IS5 | ISL2 | Deinococcus geothermalis | 30 | 1.3 |
| ISRpa2 | IS3 | IS407 | Rhodopseudomonas palustris | 30 | 1.3 |
| ISFsp6 | IS4 | IS4 | Frankia sp. | 30 | 1.3 |
| ISPpu13 | IS66 | Pseudomonas putida | 30 | 1.3 | |
| ISRso13 | IS4 | IS4 | Ralstonia solanacearum | 30 | 1.3 |
| ISBian1 | IS5 | IS5 | Bifidobacterium animalis | 30 | 1.3 |
| ISPsy32 | IS630 | Pseudomonas syringae | 28 | 5.3 | |
| ISPa119 | IS110 | IS1111 | Pseudomonas aeruginosa | 28 | 5.3 |
| ISRme20 | IS21 | Ralstonia metallidurans | 28 | 5.3 | |
| ISMva4 | IS256 | Mycobacterium vanbaalenii | 28 | 5.3 | |
| ISNml4 | IS256 | Nakamurella multipartita | 28 | 5.3 | |
| ISPa43 | Tn3 | Pseudomonas aeruginosa | 28 | 5.3 | |
| ISAzs28 | IS5 | IS1031 | Azospirillum sp. | 28 | 5.3 |
| ISAzs24 | IS3 | IS51 | Azospirillum sp. | 28 | 5.3 |
| ISStro2 | IS5 | ISL2 | Streptosporangium roseum | 28 | 5.3 |
| ISBmu30 | IS66 | Burkholderia multivorans | 28 | 5.3 | |
| ISXoo5 | IS5 | IS5 | Xanthomonas oryzae | 28 | 5.3 |
| ISRhsp6 | IS5 | IS5 | Rhodobacter sphaeroides | 28 | 5.3 |
| ISRsp18 | IS5 | IS5 | Rhizobium sp. | 28 | 5.3 |
| ISMtsp5 | IS3 | IS2 | Methylobacterium sp. | 28 | 5.3 |
| ISMno7 | IS110 | Methylobacterium nodulans | 28 | 5.3 | |
| ISArsp6 | Tn3 | Arthrobacter sp. | 28 | 5.3 | |
| ISGosp1 | IS1380 | Gordonia sp. | 28 | 5.3 | |
| ISAar1 | IS1595 | ISSod11 | Arthrobacter arilaitensis | 28 | 5.3 |
| ISMex8 | IS21 | Methylobacterium extorquens | 28 | 5.3 | |
| ISCARN104 | IS66 | Metagenomic data from CARNOULES | 28 | 5.3 | |
| ISAzo22 | IS110 | Azoarcus sp. | 28 | 5.3 | |
| ISVei5 | IS5 | IS5 | Verminephrobacter eiseniae | 28 | 5.3 |
| ISMysp6 | IS481 | Mycobacterium sp. | 28 | 5.3 | |
| ISAli20 | Tn3 | Azospirillum lipoferum | 28 | 5.3 | |
| ISAfe7 | IS3 | IS51 | Acidithiobacillus ferrooxidans | 28 | 5.3 |
| ISAfe4 | IS66 | Acidithiobacillus ferrooxidans | 28 | 5.3 | |
| ISMno4 | IS66 | ISBst12 | Methylobacterium nodulans | 28 | 5.3 |
| ISDds2 | IS4 | IS10 | Deinococcus deserti | 28 | 5.3 |
| ISUnCu3 | IS21 | Uncultured bacterium | 28 | 5.3 | |
| ISNieu4 | IS5 | IS1031 | Nitrosomonas eutropha | 28 | 5.3 |
| ISBad2 | IS3 | IS150 | Bifidobacterium adolescentis | 28 | 5.3 |
| ISTasp1 | IS5 | IS903 | Thalassiobium sp. | 28 | 5.3 |
| ISAzo7 | IS1595 | ISSod11 | Azoarcus sp. | 28 | 5.3 |
>ISPa42
Length = 16941
Score = 40.1 bits (20), Expect = 0.001
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 126 aaacgctccagcgcctcggc 145
||||||||||||||||||||
Sbjct: 3233 aaacgctccagcgcctcggc 3214
>ISAfe13
Length = 2868
Score = 34.2 bits (17), Expect = 0.085
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 132 tccagcgcctcggcgtt 148
|||||||||||||||||
Sbjct: 1266 tccagcgcctcggcgtt 1250
>ISSpu5
Length = 2556
Score = 34.2 bits (17), Expect = 0.085
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 104 gatcagcacgtccaccttggc 124
|||||||||||| ||||||||
Sbjct: 2210 gatcagcacgtcgaccttggc 2190
>ISNagr10
Length = 1000
Score = 32.2 bits (16), Expect = 0.34
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 86 cgtgccggtcttgtcg 101
||||||||||||||||
Sbjct: 276 cgtgccggtcttgtcg 261
>ISNpe21
Length = 1001
Score = 32.2 bits (16), Expect = 0.34
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 86 cgtgccggtcttgtcg 101
||||||||||||||||
Sbjct: 279 cgtgccggtcttgtcg 264
>ISNpe7
Length = 1004
Score = 32.2 bits (16), Expect = 0.34
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 86 cgtgccggtcttgtcg 101
||||||||||||||||
Sbjct: 279 cgtgccggtcttgtcg 264
>ISShes11
Length = 7669
Score = 32.2 bits (16), Expect = 0.34
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 81 gtgagcgtgccggtcttgtc 100
|||| |||||||||||||||
Sbjct: 2085 gtgatcgtgccggtcttgtc 2066
>ISAzo14
Length = 1925
Score = 32.2 bits (16), Expect = 0.34
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 97 tgtcgacgatcagcac 112
||||||||||||||||
Sbjct: 1773 tgtcgacgatcagcac 1788
>ISNph2
Length = 1003
Score = 32.2 bits (16), Expect = 0.34
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 86 cgtgccggtcttgtcg 101
||||||||||||||||
Sbjct: 279 cgtgccggtcttgtcg 264
>ISRso9
Length = 1483
Score = 32.2 bits (16), Expect = 0.34
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 130 gctccagcgcctcggc 145
||||||||||||||||
Sbjct: 1089 gctccagcgcctcggc 1074
>IS1252
Length = 1065
Score = 32.2 bits (16), Expect = 0.34
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 139 cctcggcgttcttgat 154
||||||||||||||||
Sbjct: 509 cctcggcgttcttgat 494
>ISMlu11
Length = 1434
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 102 acgatcagcacgtcc 116
|||||||||||||||
Sbjct: 806 acgatcagcacgtcc 792
>ISPeth3
Length = 1584
Score = 30.2 bits (15), Expect = 1.3
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 188 tgtcatgatcgacatcggc 206
||||||||||| |||||||
Sbjct: 666 tgtcatgatcgccatcggc 684
>ISAzs30
Length = 2365
Score = 30.2 bits (15), Expect = 1.3
Identities = 21/23 (91%)
Strand = Plus / Minus
Query: 89 gccggtcttgtcgacgatcagca 111
|||| ||| ||||||||||||||
Sbjct: 1968 gccgatctcgtcgacgatcagca 1946
>ISDeac1
Length = 1736
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 192 atgatcgacatcggc 206
|||||||||||||||
Sbjct: 1345 atgatcgacatcggc 1331
>ISCc5
Length = 1577
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 8 cgcgaggcgcggcgc 22
|||||||||||||||
Sbjct: 321 cgcgaggcgcggcgc 335
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 173 gccgcgccccgtgg 186
||||||||||||||
Sbjct: 797 gccgcgccccgtgg 784
>ISAau1
Length = 1257
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 137 cgcctcggcgttctt 151
|||||||||||||||
Sbjct: 248 cgcctcggcgttctt 234
>ISVer2
Length = 1231
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 105 atcagcacgtccacc 119
|||||||||||||||
Sbjct: 173 atcagcacgtccacc 159
>ISDge6
Length = 1117
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 1 ggctggccgcgaggc 15
|||||||||||||||
Sbjct: 534 ggctggccgcgaggc 520
>ISRpa2
Length = 1265
Score = 30.2 bits (15), Expect = 1.3
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 58 ccaccagcttgggcttgcc 76
|||||| ||||||||||||
Sbjct: 861 ccaccatcttgggcttgcc 843
>ISFsp6
Length = 1472
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 42 tgcgccgccagcacc 56
|||||||||||||||
Sbjct: 121 tgcgccgccagcacc 107
>ISPpu13
Length = 2370
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 208 tggccagcccgagtg 222
|||||||||||||||
Sbjct: 984 tggccagcccgagtg 998
>ISRso13
Length = 1467
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 48 gccagcaccgccacc 62
|||||||||||||||
Sbjct: 358 gccagcaccgccacc 372
>ISBian1
Length = 1134
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 145 cgttcttgatcagca 159
|||||||||||||||
Sbjct: 403 cgttcttgatcagca 389
>ISPsy32
Length = 1170
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 96 ttgtcgacgatcag 109
||||||||||||||
Sbjct: 846 ttgtcgacgatcag 833
>ISPa119
Length = 1378
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 120 ttggcaaaacgctc 133
||||||||||||||
Sbjct: 780 ttggcaaaacgctc 767
>ISRme20
Length = 1977
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 118 ccttggcaaaacgc 131
||||||||||||||
Sbjct: 1428 ccttggcaaaacgc 1441
>ISMva4
Length = 1458
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 102 acgatcagcacgtc 115
||||||||||||||
Sbjct: 811 acgatcagcacgtc 798
>ISNml4
Length = 1462
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 102 acgatcagcacgtc 115
||||||||||||||
Sbjct: 828 acgatcagcacgtc 815
>ISPa43
Length = 19903
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 45 gccgccagcaccgc 58
||||||||||||||
Sbjct: 7767 gccgccagcaccgc 7754
>ISAzs28
Length = 1055
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 210 gccagcccgagtgc 223
||||||||||||||
Sbjct: 528 gccagcccgagtgc 541
>ISAzs24
Length = 1325
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 128 acgctccagcgcct 141
||||||||||||||
Sbjct: 290 acgctccagcgcct 277
>ISStro2
Length = 912
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 79 cggtgagcgtgccg 92
||||||||||||||
Sbjct: 769 cggtgagcgtgccg 782
>ISBmu30
Length = 2344
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 9 gcgaggcgcggcgc 22
||||||||||||||
Sbjct: 508 gcgaggcgcggcgc 495
>ISXoo5
Length = 1607
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 55 ccgccaccagcttg 68
||||||||||||||
Sbjct: 707 ccgccaccagcttg 694
>ISRhsp6
Length = 1486
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 130 gctccagcgcctcg 143
||||||||||||||
Sbjct: 1092 gctccagcgcctcg 1079
>ISRsp18
Length = 1560
Score = 28.2 bits (14), Expect = 5.3
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 91 cggtcttgtcgacgatca 108
||||| ||||||||||||
Sbjct: 639 cggtcgtgtcgacgatca 622
>ISMtsp5
Length = 1347
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 130 gctccagcgcctcg 143
||||||||||||||
Sbjct: 936 gctccagcgcctcg 923
>ISMno7
Length = 1147
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 55 ccgccaccagcttg 68
||||||||||||||
Sbjct: 836 ccgccaccagcttg 849
>ISArsp6
Length = 26712
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 239 gatcagcaccgcga 252
||||||||||||||
Sbjct: 3936 gatcagcaccgcga 3949
>ISGosp1
Length = 1642
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 157 gcacacccgcctgt 170
||||||||||||||
Sbjct: 370 gcacacccgcctgt 383
>ISAar1
Length = 1217
Score = 28.2 bits (14), Expect = 5.3
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 85 gcgtgccggtcttgtcga 102
|||||| |||||||||||
Sbjct: 380 gcgtgcgggtcttgtcga 363
>ISMex8
Length = 2597
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 98 gtcgacgatcagca 111
||||||||||||||
Sbjct: 2153 gtcgacgatcagca 2140
>ISCARN104
Length = 2483
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 68 gggcttgcccacgg 81
||||||||||||||
Sbjct: 1438 gggcttgcccacgg 1451
>ISAzo22
Length = 1763
Score = 28.2 bits (14), Expect = 5.3
Identities = 20/22 (90%)
Strand = Plus / Plus
Query: 195 atcgacatcggcgtggccagcc 216
||||||||||||| ||| ||||
Sbjct: 367 atcgacatcggcggggcaagcc 388
>ISVei5
Length = 1620
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 47 cgccagcaccgcca 60
||||||||||||||
Sbjct: 203 cgccagcaccgcca 190
>ISMysp6
Length = 1077
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 95 cttgtcgacgatca 108
||||||||||||||
Sbjct: 655 cttgtcgacgatca 668
>ISAli20
Length = 3828
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 189 gtcatgatcgacat 202
||||||||||||||
Sbjct: 1235 gtcatgatcgacat 1222
>ISAfe7
Length = 1329
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 128 acgctccagcgcct 141
||||||||||||||
Sbjct: 290 acgctccagcgcct 277
>ISAfe4
Length = 2477
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 68 gggcttgcccacgg 81
||||||||||||||
Sbjct: 1432 gggcttgcccacgg 1445
>ISMno4
Length = 1385
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 3 ctggccgcgaggcg 16
||||||||||||||
Sbjct: 645 ctggccgcgaggcg 658
>ISDds2
Length = 1069
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 147 ttcttgatcagcac 160
||||||||||||||
Sbjct: 578 ttcttgatcagcac 591
>ISUnCu3
Length = 2596
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 71 cttgcccacggtga 84
||||||||||||||
Sbjct: 2165 cttgcccacggtga 2178
>ISNieu4
Length = 842
Score = 28.2 bits (14), Expect = 5.3
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 46 ccgccagcaccgccacca 63
|||||| |||||||||||
Sbjct: 583 ccgccaacaccgccacca 566
>ISBad2
Length = 1470
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 130 gctccagcgcctcg 143
||||||||||||||
Sbjct: 125 gctccagcgcctcg 112
>ISTasp1
Length = 1053
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 48 gccagcaccgccac 61
||||||||||||||
Sbjct: 408 gccagcaccgccac 395
>ISAzo7
Length = 1044
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 8 cgcgaggcgcggcg 21
||||||||||||||
Sbjct: 920 cgcgaggcgcggcg 907
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_182_length_267_cov_0.763158_ID_5534
(267 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISAar30 | ISL3 | Arthrobacter arilaitensis | 38 | 0.005 | |
| ISPfr4 | ISL3 | Propionibacterium freudenreichii | 34 | 0.085 | |
| ISAde4 | IS3 | IS407 | Anaeromyxobacter dehalogenans | 34 | 0.085 |
| ISFK1 | IS21 | Bradyrhizobium japonicum | 32 | 0.34 | |
| ISBxe1 | IS3 | IS3 | Burkholderia xenovorans | 32 | 0.34 |
| ISBj11 | IS21 | Bradyrhizobium japonicum | 30 | 1.3 | |
| ISPsp6 | IS5 | IS5 | Pseudomonas sp. | 30 | 1.3 |
| ISAzs18 | IS66 | Azospirillum sp. | 30 | 1.3 | |
| ISAzs17 | Tn3 | Azospirillum sp. | 30 | 1.3 | |
| ISHph1 | IS5 | IS903 | Hoeflea phototrophica | 30 | 1.3 |
| ISMtsp10 | IS1182 | Methylobacterium sp. | 30 | 1.3 | |
| ISMno30 | ISL3 | Methylobacterium nodulans | 30 | 1.3 | |
| ISAnsp5 | IS21 | Anaeromyxobacter sp. | 30 | 1.3 | |
| ISBxe2 | IS3 | IS3 | Burkholderia xenovorans | 30 | 1.3 |
| IS469 | ISL3 | - | Streptomyces coelicolor | 30 | 1.3 |
| IS1328 | IS110 | IS1111 | Yersinia enterocolitica | 30 | 1.3 |
| ISTha3 | IS91 | Thauera sp. | 28 | 5.3 | |
| ISMex44 | IS200/IS605 | IS1341 | Methylobacterium extorquens | 28 | 5.3 |
| ISAlac1 | ISLre2 | Alicyclobacillus acidocaldarius | 28 | 5.3 | |
| ISNha10 | IS256 | Nitrobacter hamburgensis | 28 | 5.3 | |
| ISGte1 | IS256 | Gordonia terrae | 28 | 5.3 | |
| ISPa43 | Tn3 | Pseudomonas aeruginosa | 28 | 5.3 | |
| ISSoEn4 | ISL3 | Primary endosymbiont of Sitophilus oryzae | 28 | 5.3 | |
| ISAzs36 | IS481 | Azospirillum sp. | 28 | 5.3 | |
| ISAzs29 | Tn3 | Azospirillum sp. | 28 | 5.3 | |
| ISAzs14 | IS630 | Azospirillum sp. | 28 | 5.3 | |
| ISNph12 | IS200/IS605 | IS1341 | Natronomonas pharaonis | 28 | 5.3 |
| ISRel24 | IS66 | Rhizobium etli | 28 | 5.3 | |
| ISFsp12 | ISAzo13 | Frankia sp. | 28 | 5.3 | |
| ISMtsp6 | IS110 | IS1111 | Methylobacterium sp. | 28 | 5.3 |
| ISPfr18 | ISL3 | Propionibacterium freudenreichii | 28 | 5.3 | |
| ISPfr16 | IS30 | Propionibacterium freudenreichii | 28 | 5.3 | |
| ISPfr6 | ISL3 | Propionibacterium freudenreichii | 28 | 5.3 | |
| ISPfr5 | IS481 | Propionibacterium freudenreichii | 28 | 5.3 | |
| ISPfr3 | ISL3 | Propionibacterium freudenreichii | 28 | 5.3 | |
| ISAau2 | IS21 | Arthrobacter aurescens | 28 | 5.3 | |
| ISSoc3 | IS200/IS605 | Synechococcus sp. | 28 | 5.3 | |
| ISAar39 | ISL3 | Arthrobacter arilaitensis | 28 | 5.3 | |
| ISAar4 | IS3 | IS3 | Arthrobacter arilaitensis | 28 | 5.3 |
| ISMdi27 | IS21 | Methylobacterium dichloromethanicum | 28 | 5.3 | |
| ISMex2 | IS481 | Methylobacterium extorquens | 28 | 5.3 | |
| ISApr6 | IS66 | Alpha proteobacterium | 28 | 5.3 | |
| ISSba8 | IS110 | IS1111 | Shewanella baltica | 28 | 5.3 |
| ISAli2 | IS630 | Azospirillum lipoferum | 28 | 5.3 | |
| ISMxa3 | IS66 | ISBst12 | Myxococcus xanthus | 28 | 5.3 |
| ISTth6 | IS630 | Thermus thermophilus | 28 | 5.3 | |
| ISSsp4 | IS21 | Sphingomonas sp. | 28 | 5.3 | |
| ISHne2 | IS481 | Hyphomonas neptunium | 28 | 5.3 | |
| ISRhru1 | IS1595 | ISSod11 | Rhodospirillum rubrum | 28 | 5.3 |
| ISSav2 | IS701 | Streptomyces avermitilis | 28 | 5.3 | |
| ISSav1 | IS4 | IS4 | Streptomyces avermitilis | 28 | 5.3 |
| ISEc12 | IS21 | Escherichia coli | 28 | 5.3 | |
| ISMyma3 | IS3 | IS51 | Mycobacterium marinum | 28 | 5.3 |
| ISMyca1 | IS1634 | Mycobacterium canettii | 28 | 5.3 | |
| ISTth1 | IS3 | IS150 | Thermus thermophilus | 28 | 5.3 |
| IS931 | IS256 | - | Burkholderia cepacia | 28 | 5.3 |
| IS1650 | IS5 | IS427 | Streptomyces coelicolor | 28 | 5.3 |
| IS1549 | IS1634 | - | Mycobacterium smegmatis | 28 | 5.3 |
| IS1420 | IS5 | IS903 | Ralstonia solanacearum | 28 | 5.3 |
>ISAar30
Length = 1435
Score = 38.2 bits (19), Expect = 0.005
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 34 ccacagctacaccctcatc 52
|||||||||||||||||||
Sbjct: 30 ccacagctacaccctcatc 12
>ISPfr4
Length = 1415
Score = 34.2 bits (17), Expect = 0.085
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 32 cgccacagctacaccctcatc 52
|||| ||||||||||||||||
Sbjct: 32 cgccccagctacaccctcatc 12
>ISAde4
Length = 1183
Score = 34.2 bits (17), Expect = 0.085
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 161 ggcaccggcctcgacct 177
|||||||||||||||||
Sbjct: 129 ggcaccggcctcgacct 113
>ISFK1
Length = 2592
Score = 32.2 bits (16), Expect = 0.34
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 69 cggtgctcaccgccgc 84
||||||||||||||||
Sbjct: 2248 cggtgctcaccgccgc 2263
>ISBxe1
Length = 1282
Score = 32.2 bits (16), Expect = 0.34
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 220 caccgccgccatgctc 235
||||||||||||||||
Sbjct: 153 caccgccgccatgctc 138
>ISBj11
Length = 2649
Score = 30.2 bits (15), Expect = 1.3
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 87 cccgccaggcccgcatccg 105
||||||||||||| |||||
Sbjct: 533 cccgccaggcccggatccg 515
>ISPsp6
Length = 1210
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 205 catcggcatcgacct 219
|||||||||||||||
Sbjct: 357 catcggcatcgacct 371
>ISAzs18
Length = 2633
Score = 30.2 bits (15), Expect = 1.3
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 151 cgccggcgtcggcaccggc 169
|||||||||||| ||||||
Sbjct: 2416 cgccggcgtcggaaccggc 2398
>ISAzs17
Length = 7252
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 144 tgctggtcgccggcg 158
|||||||||||||||
Sbjct: 2041 tgctggtcgccggcg 2027
>ISHph1
Length = 1130
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 61 ctacgacgcggtgct 75
|||||||||||||||
Sbjct: 725 ctacgacgcggtgct 739
>ISMtsp10
Length = 1778
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 103 ccgcagcgtcacgca 117
|||||||||||||||
Sbjct: 807 ccgcagcgtcacgca 793
>ISMno30
Length = 1773
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 243 gcctgccgcgcgccg 257
|||||||||||||||
Sbjct: 964 gcctgccgcgcgccg 950
>ISAnsp5
Length = 2192
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 48 tcatcgcgcccttct 62
|||||||||||||||
Sbjct: 1946 tcatcgcgcccttct 1932
>ISBxe2
Length = 1287
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 220 caccgccgccatgct 234
|||||||||||||||
Sbjct: 156 caccgccgccatgct 142
>IS469
Length = 1647
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 172 cgacctgccccacct 186
|||||||||||||||
Sbjct: 1412 cgacctgccccacct 1426
>IS1328
Length = 1343
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 205 catcggcatcgacct 219
|||||||||||||||
Sbjct: 84 catcggcatcgacct 98
>ISTha3
Length = 2424
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 87 cccgccaggcccgc 100
||||||||||||||
Sbjct: 1354 cccgccaggcccgc 1367
>ISMex44
Length = 1270
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 207 tcggcatcgacctc 220
||||||||||||||
Sbjct: 647 tcggcatcgacctc 660
>ISAlac1
Length = 1608
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 245 ctgccgcgcgccgg 258
||||||||||||||
Sbjct: 530 ctgccgcgcgccgg 517
>ISNha10
Length = 1428
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 142 cgtgctggtcgccg 155
||||||||||||||
Sbjct: 665 cgtgctggtcgccg 678
>ISGte1
Length = 1503
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 78 ccgccgccacccgc 91
||||||||||||||
Sbjct: 1319 ccgccgccacccgc 1332
>ISPa43
Length = 19903
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 205 catcggcatcgacc 218
||||||||||||||
Sbjct: 4172 catcggcatcgacc 4185
>ISSoEn4
Length = 1712
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 210 gcatcgacctcacc 223
||||||||||||||
Sbjct: 1528 gcatcgacctcacc 1515
>ISAzs36
Length = 2622
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 148 ggtcgccggcgtcg 161
||||||||||||||
Sbjct: 1780 ggtcgccggcgtcg 1793
>ISAzs29
Length = 3897
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 250 gcgcgccgggcggc 263
||||||||||||||
Sbjct: 1518 gcgcgccgggcggc 1505
>ISAzs14
Length = 1176
Score = 28.2 bits (14), Expect = 5.3
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 240 gcagcctgccgcgcgccg 257
|||||| |||||||||||
Sbjct: 717 gcagccggccgcgcgccg 734
>ISNph12
Length = 1424
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 207 tcggcatcgacctc 220
||||||||||||||
Sbjct: 690 tcggcatcgacctc 703
>ISRel24
Length = 2837
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 112 cacgcatctcgccg 125
||||||||||||||
Sbjct: 1797 cacgcatctcgccg 1810
>ISFsp12
Length = 1730
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 214 cgacctcaccgccg 227
||||||||||||||
Sbjct: 756 cgacctcaccgccg 769
>ISMtsp6
Length = 1495
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 208 cggcatcgacctca 221
||||||||||||||
Sbjct: 794 cggcatcgacctca 807
>ISPfr18
Length = 1437
Score = 28.2 bits (14), Expect = 5.3
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 211 catcgacctcaccgccgc 228
||||||||||||| ||||
Sbjct: 665 catcgacctcacccccgc 682
>ISPfr16
Length = 1234
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 166 cggcctcgacctgc 179
||||||||||||||
Sbjct: 895 cggcctcgacctgc 882
>ISPfr6
Length = 1436
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 63 acgacgcggtgctc 76
||||||||||||||
Sbjct: 541 acgacgcggtgctc 554
>ISPfr5
Length = 1329
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 163 caccggcctcgacc 176
||||||||||||||
Sbjct: 653 caccggcctcgacc 666
>ISPfr3
Length = 1457
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 39 gctacaccctcatc 52
||||||||||||||
Sbjct: 25 gctacaccctcatc 12
>ISAau2
Length = 2222
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 207 tcggcatcgacctc 220
||||||||||||||
Sbjct: 1322 tcggcatcgacctc 1335
>ISSoc3
Length = 1806
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 185 ctgccgccgcaaca 198
||||||||||||||
Sbjct: 605 ctgccgccgcaaca 592
>ISAar39
Length = 1433
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 39 gctacaccctcatc 52
||||||||||||||
Sbjct: 25 gctacaccctcatc 12
>ISAar4
Length = 1304
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 154 cggcgtcggcaccg 167
||||||||||||||
Sbjct: 177 cggcgtcggcaccg 190
>ISMdi27
Length = 2476
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 61 ctacgacgcggtgc 74
||||||||||||||
Sbjct: 397 ctacgacgcggtgc 410
>ISMex2
Length = 1031
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 77 accgccgccacccg 90
||||||||||||||
Sbjct: 436 accgccgccacccg 449
>ISApr6
Length = 2479
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 150 tcgccggcgtcggc 163
||||||||||||||
Sbjct: 1175 tcgccggcgtcggc 1162
>ISSba8
Length = 1331
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 200 cactacatcggcat 213
||||||||||||||
Sbjct: 1212 cactacatcggcat 1199
>ISAli2
Length = 1171
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 79 cgccgccacccgcc 92
||||||||||||||
Sbjct: 186 cgccgccacccgcc 173
>ISMxa3
Length = 1926
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 201 actacatcggcatc 214
||||||||||||||
Sbjct: 1048 actacatcggcatc 1061
>ISTth6
Length = 1056
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 126 cgcaaacccccggg 139
||||||||||||||
Sbjct: 257 cgcaaacccccggg 270
>ISSsp4
Length = 2558
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 150 tcgccggcgtcggc 163
||||||||||||||
Sbjct: 469 tcgccggcgtcggc 456
>ISHne2
Length = 1316
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 243 gcctgccgcgcgcc 256
||||||||||||||
Sbjct: 691 gcctgccgcgcgcc 704
>ISRhru1
Length = 1027
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 78 ccgccgccacccgc 91
||||||||||||||
Sbjct: 564 ccgccgccacccgc 551
>ISSav2
Length = 1938
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 211 catcgacctcaccg 224
||||||||||||||
Sbjct: 1445 catcgacctcaccg 1458
>ISSav1
Length = 1776
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 87 cccgccaggcccgc 100
||||||||||||||
Sbjct: 1369 cccgccaggcccgc 1382
>ISEc12
Length = 2581
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 105 gcagcgtcacgcat 118
||||||||||||||
Sbjct: 488 gcagcgtcacgcat 475
>ISMyma3
Length = 1364
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 208 cggcatcgacctca 221
||||||||||||||
Sbjct: 229 cggcatcgacctca 216
>ISMyca1
Length = 1968
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 238 ccgcagcctgccgc 251
||||||||||||||
Sbjct: 367 ccgcagcctgccgc 380
>ISTth1
Length = 1261
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 93 aggcccgcatccgc 106
||||||||||||||
Sbjct: 249 aggcccgcatccgc 262
>IS931
Length = 1477
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 15 gcaccgccatgtcg 28
||||||||||||||
Sbjct: 1287 gcaccgccatgtcg 1274
>IS1650
Length = 898
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 94 ggcccgcatccgca 107
||||||||||||||
Sbjct: 536 ggcccgcatccgca 549
>IS1549
Length = 1640
Score = 28.2 bits (14), Expect = 5.3
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 149 gtcgccggcgtcgg 162
||||||||||||||
Sbjct: 670 gtcgccggcgtcgg 657
>IS1420
Length = 1131
Score = 28.2 bits (14), Expect = 5.3
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 17 accgccatgtcgctgcgc 34
|||||||||||| |||||
Sbjct: 67 accgccatgtcgttgcgc 50
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_183_length_266_cov_0.772487_ID_5536
(266 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISAeme23 | IS66 | ISBst12 | Aeromonas media | 32 | 0.34 |
| ISSysp5 | IS5 | Synechococcus sp. | 32 | 0.34 | |
| ISPa46 | IS256 | Pseudomonas aeruginosa | 30 | 1.3 | |
| ISPa40 | Tn3 | Pseudomonas aeruginosa | 30 | 1.3 | |
| ISFsp2 | IS5 | ISL2 | Frankia sp. | 30 | 1.3 |
| ISPst12 | IS5 | Pseudomonas stutzeri | 30 | 1.3 | |
| ISMra5 | IS5 | IS427 | Methylobacterium radiotolerans | 30 | 1.3 |
| ISAzo19 | IS66 | Azoarcus sp. | 30 | 1.3 | |
| ISBcen19 | IS66 | Burkholderia cenocepacia | 30 | 1.3 | |
| ISPa1328 | IS256 | Pseudomonas aeruginosa | 30 | 1.3 | |
| ISAeme22 | IS4 | IS50 | Aeromonas media | 28 | 5.2 |
| ISAeme14 | IS4 | IS4 | Aeromonas media | 28 | 5.2 |
| ISNpe31 | IS200/IS605 | IS1341 | Natrinema pellirubrum | 28 | 5.2 |
| ISHwa29 | IS200/IS605 | IS1341 | Haloquadratum walsbyi | 28 | 5.2 |
| ISTni2 | IS481 | Thioalkalivibrio nitratireducens | 28 | 5.2 | |
| ISPa36 | IS21 | Pseudomonas aeruginosa | 28 | 5.2 | |
| ISHwa9 | IS4 | IS4Sa | Haloquadratum walsbyi | 28 | 5.2 |
| ISArsp6 | Tn3 | Arthrobacter sp. | 28 | 5.2 | |
| ISStr1 | IS1380 | Salinispora tropica | 28 | 5.2 | |
| ISAzo14 | IS1634 | Azoarcus sp. | 28 | 5.2 | |
| ISThsp8 | IS1634 | Thiomonas sp. | 28 | 5.2 | |
| ISAli3 | IS630 | Azospirillum lipoferum | 28 | 5.2 | |
| ISAau4 | Tn3 | Arthrobacter aurescens | 28 | 5.2 | |
| ISGur9 | IS21 | Geobacter uraniumreducens | 28 | 5.2 | |
| ISRae1 | IS481 | Rhodococcus aetherivorans | 28 | 5.2 | |
| ISBxe2 | IS3 | IS3 | Burkholderia xenovorans | 28 | 5.2 |
| ISMfl1 | IS4 | IS4 | Mycobacterium flavescens | 28 | 5.2 |
| ISRle2 | IS30 | Rhizobium leguminosarum | 28 | 5.2 | |
| ISC1174 | IS1 | Sulfolobus solfataricus | 28 | 5.2 | |
| ISV-M52 | IS5 | IS903 | Vibrio mimicus | 28 | 5.2 |
| ISSco2 | IS481 | Streptomyces coelicolor | 28 | 5.2 | |
| IS616 | IS1380 | - | Bacteroides fragilis | 28 | 5.2 |
| IS50R | IS4 | IS50 | Escherichia coli | 28 | 5.2 |
| ISXfu1 | IS5 | IS5 | Xanthomonas fuscans | 28 | 5.2 |
| IS1247 | IS1380 | - | Xanthobacter autotrophicus | 28 | 5.2 |
| IS1188 | IS1380 | - | Bacteroides fragilis | 28 | 5.2 |
| IS1051 | IS5 | IS5 | Xanthomonas campestris | 28 | 5.2 |
>ISAeme23
Length = 1557
Score = 32.2 bits (16), Expect = 0.34
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 14 cctccgactcgcccgc 29
||||||||||||||||
Sbjct: 250 cctccgactcgcccgc 265
>ISSysp5
Length = 1398
Score = 32.2 bits (16), Expect = 0.34
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 153 ctgcagcaacgaggcc 168
||||||||||||||||
Sbjct: 263 ctgcagcaacgaggcc 248
>ISPa46
Length = 1329
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 161 acgaggccgaactgc 175
|||||||||||||||
Sbjct: 946 acgaggccgaactgc 960
>ISPa40
Length = 6592
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 46 ttcgacggcgccgcc 60
|||||||||||||||
Sbjct: 2081 ttcgacggcgccgcc 2067
>ISFsp2
Length = 1040
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 111 cggcgcactcaccga 125
|||||||||||||||
Sbjct: 781 cggcgcactcaccga 795
>ISPst12
Length = 1331
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 153 ctgcagcaacgaggc 167
|||||||||||||||
Sbjct: 288 ctgcagcaacgaggc 274
>ISMra5
Length = 832
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 178 gccgtctgcctcgcc 192
|||||||||||||||
Sbjct: 784 gccgtctgcctcgcc 798
>ISAzo19
Length = 2423
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 87 cggcgtggtgctgca 101
|||||||||||||||
Sbjct: 361 cggcgtggtgctgca 375
>ISBcen19
Length = 2450
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 165 ggccgaactgctggc 179
|||||||||||||||
Sbjct: 1048 ggccgaactgctggc 1034
>ISPa1328
Length = 1328
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 161 acgaggccgaactgc 175
|||||||||||||||
Sbjct: 946 acgaggccgaactgc 960
>ISAeme22
Length = 1534
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 167 ccgaactgctggcc 180
||||||||||||||
Sbjct: 361 ccgaactgctggcc 374
>ISAeme14
Length = 1425
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 170 aactgctggccgtc 183
||||||||||||||
Sbjct: 461 aactgctggccgtc 474
>ISNpe31
Length = 1667
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 8 ccgacacctccgac 21
||||||||||||||
Sbjct: 923 ccgacacctccgac 936
>ISHwa29
Length = 1670
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 8 ccgacacctccgac 21
||||||||||||||
Sbjct: 926 ccgacacctccgac 939
>ISTni2
Length = 3451
Score = 28.2 bits (14), Expect = 5.2
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 166 gccgaactgctggccgtc 183
||||||||||| ||||||
Sbjct: 2963 gccgaactgctcgccgtc 2980
>ISPa36
Length = 2468
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 95 tgctgcaatcgccc 108
||||||||||||||
Sbjct: 1504 tgctgcaatcgccc 1491
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 167 ccgaactgctggcc 180
||||||||||||||
Sbjct: 1670 ccgaactgctggcc 1683
>ISHwa9
Length = 1511
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 233 tcaccggtgacagc 246
||||||||||||||
Sbjct: 1307 tcaccggtgacagc 1320
>ISArsp6
Length = 26712
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 48 cgacggcgccgccg 61
||||||||||||||
Sbjct: 3426 cgacggcgccgccg 3439
>ISStr1
Length = 1664
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 210 cgccggtgcccggc 223
||||||||||||||
Sbjct: 186 cgccggtgcccggc 199
>ISAzo14
Length = 1925
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 84 gctcggcgtggtgc 97
||||||||||||||
Sbjct: 820 gctcggcgtggtgc 833
>ISThsp8
Length = 1929
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 84 gctcggcgtggtgc 97
||||||||||||||
Sbjct: 827 gctcggcgtggtgc 840
>ISAli3
Length = 1167
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 86 tcggcgtggtgctg 99
||||||||||||||
Sbjct: 460 tcggcgtggtgctg 473
>ISAau4
Length = 3898
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 161 acgaggccgaactg 174
||||||||||||||
Sbjct: 3672 acgaggccgaactg 3685
>ISGur9
Length = 2553
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 102 atcgcccaacggcg 115
||||||||||||||
Sbjct: 949 atcgcccaacggcg 962
>ISRae1
Length = 1111
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 208 gccgccggtgcccg 221
||||||||||||||
Sbjct: 643 gccgccggtgcccg 656
>ISBxe2
Length = 1287
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 197 cccacgcgcacgcc 210
||||||||||||||
Sbjct: 604 cccacgcgcacgcc 591
>ISMfl1
Length = 1457
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 56 ccgccgcgcccaac 69
||||||||||||||
Sbjct: 418 ccgccgcgcccaac 405
>ISRle2
Length = 1116
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 70 cccggcaaactcgg 83
||||||||||||||
Sbjct: 815 cccggcaaactcgg 802
>ISC1174
Length = 1174
Score = 28.2 bits (14), Expect = 5.2
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 233 tcaccggtgacagcgact 250
||||||||||||| ||||
Sbjct: 788 tcaccggtgacagggact 805
>ISV-M52
Length = 1044
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 248 acttcgccgttcgc 261
||||||||||||||
Sbjct: 283 acttcgccgttcgc 296
>ISSco2
Length = 1964
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 142 gaaggcaccggctg 155
||||||||||||||
Sbjct: 1691 gaaggcaccggctg 1678
>IS616
Length = 1691
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 126 attctcaagccgtg 139
||||||||||||||
Sbjct: 491 attctcaagccgtg 478
>IS50R
Length = 1534
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 167 ccgaactgctggcc 180
||||||||||||||
Sbjct: 361 ccgaactgctggcc 374
>ISXfu1
Length = 1162
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 219 ccggcacctcatcc 232
||||||||||||||
Sbjct: 362 ccggcacctcatcc 349
>IS1247
Length = 1672
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 236 ccggtgacagcgac 249
||||||||||||||
Sbjct: 1387 ccggtgacagcgac 1374
>IS1188
Length = 1691
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 126 attctcaagccgtg 139
||||||||||||||
Sbjct: 491 attctcaagccgtg 478
>IS1051
Length = 1158
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 219 ccggcacctcatcc 232
||||||||||||||
Sbjct: 798 ccggcacctcatcc 811
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_184_length_266_cov_0.772487_ID_5538
(266 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISMtsp8 | IS21 | Methylobacterium sp. | 32 | 0.34 | |
| ISLar2 | IS1380 | Lentisphaera araneosa | 32 | 0.34 | |
| ISGme5 | ISL3 | Geobacter metallireducens | 32 | 0.34 | |
| ISXa1 | ISAs1 | - | Xanthobacter autotrophicus | 30 | 1.3 |
| ISPa62 | IS110 | IS1111 | Pseudomonas aeruginosa | 28 | 5.2 |
| ISPa119 | IS110 | IS1111 | Pseudomonas aeruginosa | 28 | 5.2 |
| ISPa53 | IS110 | IS1111 | Pseudomonas aeruginosa | 28 | 5.2 |
| ISDsh5 | IS5 | IS903 | Dinoroseobacter shibae | 28 | 5.2 |
| ISCfl1 | IS5 | Chthoniobacter flavus | 28 | 5.2 | |
| ISThsp1 | IS1182 | Thiomonas sp. | 28 | 5.2 | |
| ISDsh4 | IS5 | IS903 | Dinoroseobacter shibae | 28 | 5.2 |
| ISAzvi12 | IS110 | IS1111 | Azotobacter vinelandii | 28 | 5.2 |
| ISKpn4 | IS110 | IS1111 | Klebsiella pneumoniae | 28 | 5.2 |
| ISDha4 | IS4 | IS4Sa | Desulfitobacterium hafniense | 28 | 5.2 |
| ISMac5 | IS1634 | Methanosarcina acetivorans | 28 | 5.2 | |
| ISPa21 | IS110 | IS1111 | Pseudomonas aeruginosa | 28 | 5.2 |
| ISUnCu1 | IS110 | IS1111 | Uncultured bacterium | 28 | 5.2 |
| ISNagr12 | IS5 | ISH1 | Natronobacterium gregoryi | 28 | 5.2 |
| ISAme1 | IS4 | IS231 | Alkaliphilus metalliredigenes | 28 | 5.2 |
>ISMtsp8
Length = 2371
Score = 32.2 bits (16), Expect = 0.34
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 211 cagctggtcgttcagg 226
||||||||||||||||
Sbjct: 936 cagctggtcgttcagg 921
>ISLar2
Length = 1723
Score = 32.2 bits (16), Expect = 0.34
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 50 ccttacttttcaagaa 65
||||||||||||||||
Sbjct: 968 ccttacttttcaagaa 983
>ISGme5
Length = 1326
Score = 32.2 bits (16), Expect = 0.34
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 242 ggttcatccgggatttccgg 261
||||||||||||| ||||||
Sbjct: 1326 ggttcatccgggaattccgg 1307
>ISXa1
Length = 3041
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 213 gctggtcgttcagga 227
|||||||||||||||
Sbjct: 1355 gctggtcgttcagga 1369
>ISPa62
Length = 1382
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 4 gcgcagcgggggcc 17
||||||||||||||
Sbjct: 1263 gcgcagcgggggcc 1250
>ISPa119
Length = 1378
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 4 gcgcagcgggggcc 17
||||||||||||||
Sbjct: 1262 gcgcagcgggggcc 1249
>ISPa53
Length = 1381
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 4 gcgcagcgggggcc 17
||||||||||||||
Sbjct: 1262 gcgcagcgggggcc 1249
>ISDsh5
Length = 1049
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 155 atccccggcgggtt 168
||||||||||||||
Sbjct: 1009 atccccggcgggtt 996
>ISCfl1
Length = 1338
Score = 28.2 bits (14), Expect = 5.2
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 86 ccacccccagtgcgcggc 103
||||||||||| ||||||
Sbjct: 912 ccacccccagttcgcggc 895
>ISThsp1
Length = 1539
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 247 atccgggatttccg 260
||||||||||||||
Sbjct: 378 atccgggatttccg 391
>ISDsh4
Length = 1049
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 155 atccccggcgggtt 168
||||||||||||||
Sbjct: 1009 atccccggcgggtt 996
>ISAzvi12
Length = 1248
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 4 gcgcagcgggggcc 17
||||||||||||||
Sbjct: 1132 gcgcagcgggggcc 1119
>ISKpn4
Length = 1377
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 4 gcgcagcgggggcc 17
||||||||||||||
Sbjct: 1262 gcgcagcgggggcc 1249
>ISDha4
Length = 1593
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 235 ggtaaagggttcat 248
||||||||||||||
Sbjct: 1002 ggtaaagggttcat 989
>ISMac5
Length = 1719
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 52 ttacttttcaagaa 65
||||||||||||||
Sbjct: 1367 ttacttttcaagaa 1354
>ISPa21
Length = 1364
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 4 gcgcagcgggggcc 17
||||||||||||||
Sbjct: 1253 gcgcagcgggggcc 1240
>ISUnCu1
Length = 1381
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 4 gcgcagcgggggcc 17
||||||||||||||
Sbjct: 1262 gcgcagcgggggcc 1249
>ISNagr12
Length = 940
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 195 cgtcaaagccgatc 208
||||||||||||||
Sbjct: 297 cgtcaaagccgatc 284
>ISAme1
Length = 1488
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 54 acttttcaagaaaa 67
||||||||||||||
Sbjct: 1361 acttttcaagaaaa 1374
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_185_length_266_cov_0.772487_ID_5540
(266 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISGeob4 | IS5 | ISL2 | Geodermatophilus obscurus | 30 | 1.3 |
| ISGeob3 | IS5 | ISL2 | Geodermatophilus obscurus | 30 | 1.3 |
| ISGau7 | IS21 | Gemmatimonas aurantiaca | 30 | 1.3 | |
| ISArsp6 | Tn3 | Arthrobacter sp. | 30 | 1.3 | |
| ISAzo30 | IS630 | Azoarcus sp. | 30 | 1.3 | |
| ISGdi14 | IS3 | IS51 | Gluconacetobacter diazotrophicus | 30 | 1.3 |
| ISGsp1 | IS982 | Geobacillus sp. | 30 | 1.3 | |
| ISNwi1 | IS1595 | ISNwi1 | Nitrobacter winogradskyi | 30 | 1.3 |
| ISBj4 | IS110 | IS1111 | Bradyrhizobium japonicum | 30 | 1.3 |
| ISSbo1 | IS91 | Shigella boydii | 28 | 5.2 | |
| ISMno24 | IS91 | Methylobacterium nodulans | 28 | 5.2 | |
| ISPa46 | IS256 | Pseudomonas aeruginosa | 28 | 5.2 | |
| ISEc37 | IS91 | Escherichia coli | 28 | 5.2 | |
| ISAzs21 | IS66 | Azospirillum sp. | 28 | 5.2 | |
| ISCps8 | IS110 | IS1111 | Colwellia psychrerythraea | 28 | 5.2 |
| ISGeob1 | IS5 | ISL2 | Geodermatophilus obscurus | 28 | 5.2 |
| ISPha2 | IS5 | Paracoccus halophilus | 28 | 5.2 | |
| ISRop2 | ISAzo13 | Rhodococcus opacus | 28 | 5.2 | |
| IS1087B | IS3 | IS2 | Ralstonia metallidurans | 28 | 5.2 |
| ISMesp2 | IS1380 | Mesorhizobium sp. | 28 | 5.2 | |
| ISAnsp12 | IS66 | Anaeromyxobacter sp. | 28 | 5.2 | |
| ISKrh1 | IS481 | Kocuria rhizophila | 28 | 5.2 | |
| ISCARN16 | IS21 | Metagenomic data from CARNOULES | 28 | 5.2 | |
| ISAli20 | Tn3 | Azospirillum lipoferum | 28 | 5.2 | |
| ISRel3 | IS21 | Rhizobium etli | 28 | 5.2 | |
| ISSpo9 | IS5 | IS903 | Silicibacter pomeroyi | 28 | 5.2 |
| ISFsp9 | IS701 | Frankia sp. | 28 | 5.2 | |
| ISSav2 | IS701 | Streptomyces avermitilis | 28 | 5.2 | |
| ISApu2 | IS4 | ISH8 | Aeromonas punctata | 28 | 5.2 |
| ISSau9 | IS21 | Staphylococcus aureus | 28 | 5.2 | |
| ISAli15 | IS66 | Azospirillum lipoferum | 28 | 5.2 | |
| ISAzvi3 | IS110 | IS1111 | Azotobacter vinelandii | 28 | 5.2 |
| ISH4 | IS1595 | ISH4 | Halobacterium sp. | 28 | 5.2 |
| IS91 | IS91 | - | Escherichia coli | 28 | 5.2 |
| ISPa1328 | IS256 | Pseudomonas aeruginosa | 28 | 5.2 | |
| IS1087 | IS3 | IS2 | Ralstonia eutropha | 28 | 5.2 |
>ISGeob4
Length = 982
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 192 cgctgctcaagaccc 206
|||||||||||||||
Sbjct: 858 cgctgctcaagaccc 872
>ISGeob3
Length = 970
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 192 cgctgctcaagaccc 206
|||||||||||||||
Sbjct: 846 cgctgctcaagaccc 860
>ISGau7
Length = 2510
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 248 ggcgcggcggccggc 262
|||||||||||||||
Sbjct: 257 ggcgcggcggccggc 271
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 105 ccgagatcatcgat 118
||||||||||||||
Sbjct: 2182 ccgagatcatcgat 2169
>ISArsp6
Length = 26712
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 245 ccgggcgcggcggcc 259
|||||||||||||||
Sbjct: 6975 ccgggcgcggcggcc 6989
>ISAzo30
Length = 1100
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 115 cgatatcggcaagca 129
|||||||||||||||
Sbjct: 1024 cgatatcggcaagca 1038
>ISGdi14
Length = 1318
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 106 cgagatcatcgatat 120
|||||||||||||||
Sbjct: 1255 cgagatcatcgatat 1269
>ISGsp1
Length = 1004
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 35 aacgtggccaacacc 49
|||||||||||||||
Sbjct: 430 aacgtggccaacacc 444
>ISNwi1
Length = 2348
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 223 aggcgacgaagaaga 237
|||||||||||||||
Sbjct: 1460 aggcgacgaagaaga 1446
>ISBj4
Length = 1576
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 112 catcgatatcggcaa 126
|||||||||||||||
Sbjct: 114 catcgatatcggcaa 128
>ISSbo1
Length = 1709
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 24 gtgacagcctcaac 37
||||||||||||||
Sbjct: 1259 gtgacagcctcaac 1272
>ISMno24
Length = 2157
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 155 gccgtgctcgccta 168
||||||||||||||
Sbjct: 485 gccgtgctcgccta 472
>ISPa46
Length = 1329
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 221 gcaggcgacgaaga 234
||||||||||||||
Sbjct: 776 gcaggcgacgaaga 763
>ISEc37
Length = 1828
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 227 gacgaagaagacgc 240
||||||||||||||
Sbjct: 185 gacgaagaagacgc 198
>ISAzs21
Length = 2598
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 245 ccgggcgcggcggc 258
||||||||||||||
Sbjct: 1867 ccgggcgcggcggc 1880
>ISCps8
Length = 1563
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 107 gagatcatcgatat 120
||||||||||||||
Sbjct: 1059 gagatcatcgatat 1072
>ISGeob1
Length = 1020
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 192 cgctgctcaagacc 205
||||||||||||||
Sbjct: 866 cgctgctcaagacc 879
>ISPha2
Length = 1387
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 245 ccgggcgcggcggc 258
||||||||||||||
Sbjct: 794 ccgggcgcggcggc 807
>ISRop2
Length = 2171
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 250 cgcggcggccggcg 263
||||||||||||||
Sbjct: 1444 cgcggcggccggcg 1457
>IS1087B
Length = 1330
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 246 cgggcgcggcggcc 259
||||||||||||||
Sbjct: 551 cgggcgcggcggcc 538
>ISMesp2
Length = 1618
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 19 gcgcggtgacagcc 32
||||||||||||||
Sbjct: 815 gcgcggtgacagcc 828
>ISAnsp12
Length = 2926
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 250 cgcggcggccggcg 263
||||||||||||||
Sbjct: 349 cgcggcggccggcg 362
>ISKrh1
Length = 2854
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 121 cggcaagcaggcgc 134
||||||||||||||
Sbjct: 374 cggcaagcaggcgc 387
>ISCARN16
Length = 2594
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 39 tggccaacaccgag 52
||||||||||||||
Sbjct: 1568 tggccaacaccgag 1581
>ISAli20
Length = 3828
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 252 cggcggccggcgaa 265
||||||||||||||
Sbjct: 370 cggcggccggcgaa 357
>ISRel3
Length = 2308
Score = 28.2 bits (14), Expect = 5.2
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 5 ggcttcaacgccgagcgc 22
|||||| |||||||||||
Sbjct: 1772 ggcttcgacgccgagcgc 1755
>ISSpo9
Length = 1049
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 14 gccgagcgcggtga 27
||||||||||||||
Sbjct: 968 gccgagcgcggtga 955
>ISFsp9
Length = 1559
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 18 agcgcggtgacagc 31
||||||||||||||
Sbjct: 1235 agcgcggtgacagc 1222
>ISSav2
Length = 1938
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 250 cgcggcggccggcg 263
||||||||||||||
Sbjct: 1056 cgcggcggccggcg 1043
>ISApu2
Length = 1388
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 111 tcatcgatatcggc 124
||||||||||||||
Sbjct: 599 tcatcgatatcggc 586
>ISSau9
Length = 2446
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 190 gccgctgctcaaga 203
||||||||||||||
Sbjct: 1039 gccgctgctcaaga 1052
>ISAli15
Length = 2658
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 251 gcggcggccggcga 264
||||||||||||||
Sbjct: 2140 gcggcggccggcga 2127
>ISAzvi3
Length = 1424
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 18 agcgcggtgacagc 31
||||||||||||||
Sbjct: 940 agcgcggtgacagc 953
>ISH4
Length = 1004
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 78 tgcccgagctgccg 91
||||||||||||||
Sbjct: 173 tgcccgagctgccg 186
>IS91
Length = 1829
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 227 gacgaagaagacgc 240
||||||||||||||
Sbjct: 185 gacgaagaagacgc 198
>ISPa1328
Length = 1328
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 221 gcaggcgacgaaga 234
||||||||||||||
Sbjct: 776 gcaggcgacgaaga 763
>IS1087
Length = 1330
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 246 cgggcgcggcggcc 259
||||||||||||||
Sbjct: 555 cgggcgcggcggcc 542
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_186_length_266_cov_0.73545_ID_5542
(266 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISThsp9 | Tn3 | Thiomonas sp. | 36 | 0.021 | |
| ISCARN18 | IS110 | IS1111 | Metagenomic data from CARNOULES | 36 | 0.021 |
| ISMno8 | IS1182 | Methylobacterium nodulans | 34 | 0.085 | |
| ISPa25 | IS110 | IS1111 | Pseudomonas aeruginosa | 34 | 0.085 |
| ISAzs37 | IS630 | Azospirillum sp. | 32 | 0.34 | |
| ISMtsp18 | IS3 | IS2 | Methylobacterium sp. | 32 | 0.34 |
| ISMca6 | ISAs1 | Methylococcus capsulatus | 32 | 0.34 | |
| ISGbe2 | IS3 | IS2 | Granulibacter bethesdensis | 30 | 1.3 |
| ISRhsp2 | IS3 | IS2 | Rhodobacter sphaeroides | 30 | 1.3 |
| IS994 | IS3 | IS51 | Renibacterium salmoninarum | 30 | 1.3 |
| IS426 | IS3 | IS2 | Agrobacterium tumefaciens | 30 | 1.3 |
| ISRsp12 | Tn3 | Rhizhobium sp. | 28 | 5.2 | |
| ISAs29 | IS21 | Aeromonas salmonicida | 28 | 5.2 | |
| ISTvi1 | ISKra4 | ISKra4 | Thiocystis violascens | 28 | 5.2 |
| ISSiac4 | ISKra4 | ISKra4 | Singulisphaera acidiphila | 28 | 5.2 |
| ISNpe8 | IS66 | ISBst12 | Natrinema pellirubrum | 28 | 5.2 |
| ISPam1 | IS5 | IS903 | Paracoccus aminophilus | 28 | 5.2 |
| ISPlc1 | IS5 | IS903 | Paracoccus alcaliphilus | 28 | 5.2 |
| ISLrh2 | IS5 | IS5 | Lactobacillus rhamnosus | 28 | 5.2 |
| ISMno14 | IS110 | IS1111 | Methylobacterium nodulans | 28 | 5.2 |
| ISSpo7 | IS5 | IS427 | Silicibacter pomeroyi | 28 | 5.2 |
| ISAnsp11 | IS3 | IS3 | Anaeromyxobacter sp. | 28 | 5.2 |
| ISMex13 | IS21 | Methylobacterium extorquens | 28 | 5.2 | |
| ISTha1 | ISAs1 | Thauera sp. | 28 | 5.2 | |
| ISAzo17 | IS21 | Azoarcus sp. | 28 | 5.2 | |
| ISAfe3 | IS110 | Acidithiobacillus ferrooxidans | 28 | 5.2 | |
| ISUnCu4 | IS30 | Plasmid QKH54 | 28 | 5.2 | |
| ISSpo9 | IS5 | IS903 | Silicibacter pomeroyi | 28 | 5.2 |
| ISKpn4 | IS110 | IS1111 | Klebsiella pneumoniae | 28 | 5.2 |
| ISUnCu8 | IS4 | IS50 | uncultured bacterium | 28 | 5.2 |
| ISH10B | IS66 | ISBst12 | Halobacterium sp | 28 | 5.2 |
| IS1112b | IS30 | - | Xanthomonas oryzae | 28 | 5.2 |
| IS1112 | IS30 | - | Xanthomonas oryzae | 28 | 5.2 |
>ISThsp9
Length = 6215
Score = 36.2 bits (18), Expect = 0.021
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 246 tccgccttggccggtggc 263
||||||||||||||||||
Sbjct: 2210 tccgccttggccggtggc 2227
>ISCARN18
Length = 1561
Score = 36.2 bits (18), Expect = 0.021
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 133 tgctcaccgccacggcgg 150
||||||||||||||||||
Sbjct: 892 tgctcaccgccacggcgg 909
>ISMno8
Length = 1466
Score = 34.2 bits (17), Expect = 0.085
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 161 cgggctggtgggctttg 177
|||||||||||||||||
Sbjct: 449 cgggctggtgggctttg 465
>ISPa25
Length = 1410
Score = 34.2 bits (17), Expect = 0.085
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 132 ctgctcaccgccacggc 148
|||||||||||||||||
Sbjct: 756 ctgctcaccgccacggc 772
>ISAzs37
Length = 1058
Score = 32.2 bits (16), Expect = 0.34
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 158 ggtcgggctggtgggc 173
||||||||||||||||
Sbjct: 340 ggtcgggctggtgggc 325
>ISMtsp18
Length = 1341
Score = 32.2 bits (16), Expect = 0.34
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 70 gtgcgctggtgctcgg 85
||||||||||||||||
Sbjct: 809 gtgcgctggtgctcgg 824
>ISMca6
Length = 1180
Score = 32.2 bits (16), Expect = 0.34
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 210 gccaccggcaacgacc 225
||||||||||||||||
Sbjct: 611 gccaccggcaacgacc 626
>ISGbe2
Length = 1352
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 71 tgcgctggtgctcgg 85
|||||||||||||||
Sbjct: 821 tgcgctggtgctcgg 835
>ISRhsp2
Length = 1299
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 71 tgcgctggtgctcgg 85
|||||||||||||||
Sbjct: 775 tgcgctggtgctcgg 789
>IS994
Length = 1345
Score = 30.2 bits (15), Expect = 1.3
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 201 gtgcgcctggccaccggca 219
|||| ||||||||||||||
Sbjct: 648 gtgcacctggccaccggca 630
>IS426
Length = 1319
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 71 tgcgctggtgctcgg 85
|||||||||||||||
Sbjct: 791 tgcgctggtgctcgg 805
>ISRsp12
Length = 3701
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 182 cttgatcgtgcccc 195
||||||||||||||
Sbjct: 3165 cttgatcgtgcccc 3152
>ISAs29
Length = 2613
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 244 cctccgccttggcc 257
||||||||||||||
Sbjct: 1002 cctccgccttggcc 989
>ISTvi1
Length = 1417
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 154 cgctggtcgggctg 167
||||||||||||||
Sbjct: 712 cgctggtcgggctg 699
>ISSiac4
Length = 1519
Score = 28.2 bits (14), Expect = 5.2
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 194 ccatctggtgcgcctggc 211
||||| ||||||||||||
Sbjct: 1276 ccatccggtgcgcctggc 1259
>ISNpe8
Length = 1650
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 90 cgcagaaaacgccc 103
||||||||||||||
Sbjct: 1426 cgcagaaaacgccc 1439
>ISPam1
Length = 1050
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 145 cggcggtgacgctg 158
||||||||||||||
Sbjct: 646 cggcggtgacgctg 633
>ISPlc1
Length = 1050
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 145 cggcggtgacgctg 158
||||||||||||||
Sbjct: 646 cggcggtgacgctg 633
>ISLrh2
Length = 1575
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 124 tggcttcgctgctc 137
||||||||||||||
Sbjct: 324 tggcttcgctgctc 311
>ISMno14
Length = 1428
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 180 ggcttgatcgtgcc 193
||||||||||||||
Sbjct: 594 ggcttgatcgtgcc 607
>ISSpo7
Length = 843
Score = 28.2 bits (14), Expect = 5.2
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 199 tggtgcgcctggccaccg 216
||||| ||||||||||||
Sbjct: 294 tggtgggcctggccaccg 311
>ISAnsp11
Length = 1510
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 137 caccgccacggcgg 150
||||||||||||||
Sbjct: 1262 caccgccacggcgg 1275
>ISMex13
Length = 2359
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 73 cgctggtgctcggc 86
||||||||||||||
Sbjct: 596 cgctggtgctcggc 609
>ISTha1
Length = 1301
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 79 tgctcggcttgcgc 92
||||||||||||||
Sbjct: 207 tgctcggcttgcgc 194
>ISAzo17
Length = 2095
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 139 ccgccacggcggtg 152
||||||||||||||
Sbjct: 1003 ccgccacggcggtg 990
>ISAfe3
Length = 1560
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 60 ggcgagttgagtgc 73
||||||||||||||
Sbjct: 889 ggcgagttgagtgc 902
>ISUnCu4
Length = 1113
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 101 ccccagtctgctgg 114
||||||||||||||
Sbjct: 827 ccccagtctgctgg 814
>ISSpo9
Length = 1049
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 145 cggcggtgacgctg 158
||||||||||||||
Sbjct: 645 cggcggtgacgctg 632
>ISKpn4
Length = 1377
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 131 gctgctcaccgcca 144
||||||||||||||
Sbjct: 723 gctgctcaccgcca 736
>ISUnCu8
Length = 1509
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 146 ggcggtgacgctgg 159
||||||||||||||
Sbjct: 871 ggcggtgacgctgg 884
>ISH10B
Length = 1629
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 90 cgcagaaaacgccc 103
||||||||||||||
Sbjct: 1405 cgcagaaaacgccc 1418
>IS1112b
Length = 1055
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 125 ggcttcgctgctca 138
||||||||||||||
Sbjct: 572 ggcttcgctgctca 559
>IS1112
Length = 1055
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 125 ggcttcgctgctca 138
||||||||||||||
Sbjct: 572 ggcttcgctgctca 559
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_187_length_265_cov_0.771277_ID_5544
(265 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISCARN49 | IS21 | Metagenomic data from CARNOULES | 34 | 0.084 | |
| ISMtsp8 | IS21 | Methylobacterium sp. | 32 | 0.33 | |
| ISApr3 | IS1595 | ISSod11 | Alpha proteobacterium | 32 | 0.33 |
| ISNamo2 | IS5 | ISH1 | Natronomonas moolapensis | 30 | 1.3 |
| ISRle12 | IS256 | Rhizobium leguminosarum | 30 | 1.3 | |
| ISPa40 | Tn3 | Pseudomonas aeruginosa | 30 | 1.3 | |
| ISAnsp8 | IS3 | IS407 | Anaeromyxobacter sp. | 30 | 1.3 |
| ISCARN48 | IS66 | Metagenomic data from CARNOULES | 30 | 1.3 | |
| ISFsp10 | IS66 | ISBst12 | Frankia sp. | 30 | 1.3 |
| ISArch14 | IS66 | ISBst12 | uncultured archaeon | 30 | 1.3 |
| ISRhosp5 | IS3 | IS51 | Rhodococcus sp. | 30 | 1.3 |
| ISFsp3 | IS21 | Frankia sp. | 30 | 1.3 | |
| ISAtu1 | IS110 | IS1111 | Agrobacterium tumefaciens | 30 | 1.3 |
| ISRsp4 | IS110 | IS1111 | Rhizobium sp. | 30 | 1.3 |
| IS476 | IS3 | IS407 | Xanthomonas campestris | 30 | 1.3 |
| IS1071 | Tn3 | - | Alcaligenes sp | 30 | 1.3 |
| ISUnCu17 | IS1182 | Uncultured bacteria | 28 | 5.2 | |
| ISFsp17 | ISKra4 | ISKra4 | Frankia sp. | 28 | 5.2 |
| ISMva4 | IS256 | Mycobacterium vanbaalenii | 28 | 5.2 | |
| ISRer3 | IS256 | Rhodococcus erythropolis | 28 | 5.2 | |
| ISH30 | IS4 | ISH8 | Halobacterium salinarum | 28 | 5.2 |
| ISPmar1 | IS6 | Paracoccus marcusii | 28 | 5.2 | |
| ISPpa8 | IS5 | IS903 | Paracoccus pantotrophus | 28 | 5.2 |
| ISFac11 | IS200/IS605 | IS1341 | Ferroplasma acidarmanus | 28 | 5.2 |
| ISMafe1 | IS5 | IS5 | Mariprofundus ferrooxydans | 28 | 5.2 |
| ISMsm10 | IS1380 | Mycobacterium smegmatis | 28 | 5.2 | |
| ISOan2 | IS1380 | Octadecabacter antarcticus | 28 | 5.2 | |
| ISCc5 | IS1182 | Caulobacter crescentus | 28 | 5.2 | |
| ISMex31 | IS110 | IS1111 | Methylobacterium extorquens | 28 | 5.2 |
| ISMdi7 | IS21 | Methylobacterium dichloromethanicum | 28 | 5.2 | |
| ISThsp7 | IS1634 | Thiomonas sp. | 28 | 5.2 | |
| ISStpr1 | IS481 | Streptomyces pristinaespiralis | 28 | 5.2 | |
| ISMsm7 | IS3 | IS3 | Mycobacterium smegmatis | 28 | 5.2 |
| ISBcen22 | IS3 | IS407 | Burkholderia cenocepacia | 28 | 5.2 |
| ISSus1 | IS701 | Solibacter usitatus | 28 | 5.2 | |
| ISDar2 | IS4 | IS4Sa | Dechloromonas aromatica | 28 | 5.2 |
| ISAzo25 | IS1182 | Azoarcus sp. | 28 | 5.2 | |
| ISCge1 | IS256 | IS1249 | Corynebacterium genitalium | 28 | 5.2 |
| ISRm9 | IS21 | - | Rhizobium meliloti | 28 | 5.2 |
| IS66 | IS66 | Agrobacterium tumefaciens | 28 | 5.2 | |
| IS1535 | IS607 | Mycobacterium tuberculosis | 28 | 5.2 | |
| IS1246 | IS5 | IS5 | Pseudomonas putida | 28 | 5.2 |
| IS1166 | IS256 | - | Rhodococcus sp. | 28 | 5.2 |
>ISCARN49
Length = 2630
Score = 34.2 bits (17), Expect = 0.084
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 106 gtcgaccgcatcgaagc 122
|||||||||||||||||
Sbjct: 1172 gtcgaccgcatcgaagc 1188
>ISMtsp8
Length = 2371
Score = 32.2 bits (16), Expect = 0.33
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 89 atcaaggccacgctgg 104
||||||||||||||||
Sbjct: 1470 atcaaggccacgctgg 1485
>ISApr3
Length = 1080
Score = 32.2 bits (16), Expect = 0.33
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 32 gtctggctggccatca 47
||||||||||||||||
Sbjct: 346 gtctggctggccatca 331
>ISNamo2
Length = 937
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 49 cgcatcggtgcgcgg 63
|||||||||||||||
Sbjct: 355 cgcatcggtgcgcgg 341
>ISRle12
Length = 1297
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 114 catcgaagcgctgaa 128
|||||||||||||||
Sbjct: 1066 catcgaagcgctgaa 1080
>ISPa40
Length = 6592
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 132 attcatccacatcca 146
|||||||||||||||
Sbjct: 5354 attcatccacatcca 5340
>ISAnsp8
Length = 1225
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 2 gccgtcggcgcgggc 16
|||||||||||||||
Sbjct: 683 gccgtcggcgcgggc 669
>ISCARN48
Length = 2581
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 47 accgcatcggtgcgc 61
|||||||||||||||
Sbjct: 2006 accgcatcggtgcgc 2020
>ISFsp10
Length = 1713
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 2 gccgtcggcgcgggc 16
|||||||||||||||
Sbjct: 886 gccgtcggcgcgggc 872
>ISArch14
Length = 1560
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 45 tcaccgcatcggtgc 59
|||||||||||||||
Sbjct: 583 tcaccgcatcggtgc 597
>ISRhosp5
Length = 1335
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 4 cgtcggcgcgggcac 18
|||||||||||||||
Sbjct: 551 cgtcggcgcgggcac 537
>ISFsp3
Length = 2209
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 220 ctccgacggcatgcc 234
|||||||||||||||
Sbjct: 1373 ctccgacggcatgcc 1387
>ISAtu1
Length = 1316
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 104 gcgtcgaccgcatcg 118
|||||||||||||||
Sbjct: 340 gcgtcgaccgcatcg 326
>ISRsp4
Length = 1398
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 111 ccgcatcgaagcgct 125
|||||||||||||||
Sbjct: 547 ccgcatcgaagcgct 561
>IS476
Length = 1226
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 114 catcgaagcgctgaa 128
|||||||||||||||
Sbjct: 292 catcgaagcgctgaa 306
>IS1071
Length = 3201
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 44 atcaccgcatcggtg 58
|||||||||||||||
Sbjct: 1803 atcaccgcatcggtg 1817
>ISUnCu17
Length = 1481
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 201 cgaccacaatccgc 214
||||||||||||||
Sbjct: 1076 cgaccacaatccgc 1089
>ISFsp17
Length = 1693
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 54 cggtgcgcggcgcg 67
||||||||||||||
Sbjct: 917 cggtgcgcggcgcg 904
>ISMva4
Length = 1458
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 33 tctggctggccatc 46
||||||||||||||
Sbjct: 1222 tctggctggccatc 1235
>ISRer3
Length = 1471
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 1 ggccgtcggcgcgg 14
||||||||||||||
Sbjct: 755 ggccgtcggcgcgg 742
>ISH30
Length = 1654
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 114 catcgaagcgctga 127
||||||||||||||
Sbjct: 1106 catcgaagcgctga 1119
>ISPmar1
Length = 821
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 209 atccgcaccatctc 222
||||||||||||||
Sbjct: 574 atccgcaccatctc 561
>ISPpa8
Length = 1050
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 112 cgcatcgaagcgct 125
||||||||||||||
Sbjct: 783 cgcatcgaagcgct 796
>ISFac11
Length = 1514
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 131 aattcatccacatc 144
||||||||||||||
Sbjct: 50 aattcatccacatc 37
>ISMafe1
Length = 1745
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 225 acggcatgccggcc 238
||||||||||||||
Sbjct: 965 acggcatgccggcc 952
>ISMsm10
Length = 1661
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 31 ggtctggctggcca 44
||||||||||||||
Sbjct: 225 ggtctggctggcca 212
>ISOan2
Length = 1655
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 75 tggcacgcagctca 88
||||||||||||||
Sbjct: 164 tggcacgcagctca 177
>ISCc5
Length = 1577
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 196 gcgcccgaccacaa 209
||||||||||||||
Sbjct: 369 gcgcccgaccacaa 382
>ISMex31
Length = 1091
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 4 cgtcggcgcgggca 17
||||||||||||||
Sbjct: 621 cgtcggcgcgggca 608
>ISMdi7
Length = 2568
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 109 gaccgcatcgaagc 122
||||||||||||||
Sbjct: 1469 gaccgcatcgaagc 1456
>ISThsp7
Length = 1920
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 222 ccgacggcatgccg 235
||||||||||||||
Sbjct: 839 ccgacggcatgccg 852
>ISStpr1
Length = 1052
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 107 tcgaccgcatcgaa 120
||||||||||||||
Sbjct: 738 tcgaccgcatcgaa 751
>ISMsm7
Length = 1280
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 30 aggtctggctggcc 43
||||||||||||||
Sbjct: 743 aggtctggctggcc 756
>ISBcen22
Length = 1202
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 53 tcggtgcgcggcgc 66
||||||||||||||
Sbjct: 854 tcggtgcgcggcgc 841
>ISSus1
Length = 1474
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 194 acgcgcccgaccac 207
||||||||||||||
Sbjct: 1297 acgcgcccgaccac 1310
>ISDar2
Length = 1322
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 217 catctccgacggca 230
||||||||||||||
Sbjct: 643 catctccgacggca 656
>ISAzo25
Length = 1388
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 201 cgaccacaatccgc 214
||||||||||||||
Sbjct: 1117 cgaccacaatccgc 1130
>ISCge1
Length = 1386
Score = 28.2 bits (14), Expect = 5.2
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 107 tcgaccgcatcgaagcgc 124
|||| |||||||||||||
Sbjct: 587 tcgaacgcatcgaagcgc 604
>ISRm9
Length = 2798
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 168 cattggtggcgggc 181
||||||||||||||
Sbjct: 1979 cattggtggcgggc 1992
>IS66
Length = 2556
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 29 aaggtctggctggc 42
||||||||||||||
Sbjct: 507 aaggtctggctggc 520
>IS1535
Length = 2300
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 201 cgaccacaatccgc 214
||||||||||||||
Sbjct: 476 cgaccacaatccgc 463
>IS1246
Length = 1275
Score = 28.2 bits (14), Expect = 5.2
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 203 accacaatccgcaccatc 220
|||| |||||||||||||
Sbjct: 286 accagaatccgcaccatc 269
>IS1166
Length = 1469
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 1 ggccgtcggcgcgg 14
||||||||||||||
Sbjct: 754 ggccgtcggcgcgg 741
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_188_length_265_cov_0.776596_ID_5546
(265 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISMmg1 | IS110 | IS1111 | Magnetospirillum magnetotacticum | 36 | 0.021 |
| TnAs3 | Tn3 | Aeromonas salmonicida | 34 | 0.084 | |
| ISFK1 | IS21 | Bradyrhizobium japonicum | 34 | 0.084 | |
| ISRm21 | ISAs1 | Sinorhizobium meliloti | 34 | 0.084 | |
| ISGho1 | IS1182 | Grimontia hollisae | 32 | 0.33 | |
| ISMch7 | IS701 | Methylobacterium chloromethanicum | 32 | 0.33 | |
| TnAs2 | Tn3 | Aeromonas salmonicida | 30 | 1.3 | |
| ISCARN37 | ISAzo13 | Metagenomic data from CARNOULES | 30 | 1.3 | |
| ISMra1 | IS3 | IS407 | Methylobacterium radiotolerans | 30 | 1.3 |
| IS3514 | IS481 | Corynebacterium jeikeium | 30 | 1.3 | |
| ISMdi13 | IS256 | Methylobacterium dichloromethanicum | 30 | 1.3 | |
| ISCARN5 | IS110 | IS1111 | Metagenomic data from CARNOULES | 30 | 1.3 |
| ISMno3 | IS66 | ISBst12 | Methylobacterium nodulans | 30 | 1.3 |
| ISRhru2 | IS66 | ISBst12 | Rhodospirillum rubrum | 30 | 1.3 |
| ISChy3 | IS481 | Carboxydothermus hydrogenoformans | 30 | 1.3 | |
| ISEc14 | IS3 | IS51 | Escherichia coli | 30 | 1.3 |
| ISPa61 | ISL3 | Pseudomonas aeruginosa | 28 | 5.2 | |
| ISMex45 | IS200/IS605 | IS1341 | Methylobacterium extorquens | 28 | 5.2 |
| ISNamo19 | IS200/IS605 | IS605 | Natronomonas moolapensis | 28 | 5.2 |
| ISHvo9 | IS110 | IS1111 | Haloferax volcanii | 28 | 5.2 |
| ISDere1 | ISKra4 | ISKra4 | Desulfohalobium retbaense | 28 | 5.2 |
| ISBsa1 | IS256 | Blastococcus saxobsidens | 28 | 5.2 | |
| ISLcr1 | ISLre2 | Lactobacillus crispatus | 28 | 5.2 | |
| ISNha9 | IS256 | Nitrobacter hamburgensis | 28 | 5.2 | |
| ISAzs36 | IS481 | Azospirillum sp. | 28 | 5.2 | |
| ISAzs17 | Tn3 | Azospirillum sp. | 28 | 5.2 | |
| ISRel5 | IS21 | Rhizobium etli | 28 | 5.2 | |
| ISPko1 | IS5 | IS903 | Paracoccus kondratievae | 28 | 5.2 |
| ISMtsp8 | IS21 | Methylobacterium sp. | 28 | 5.2 | |
| ISCde1 | IS66 | Candidatus Desulforudis audaxviator | 28 | 5.2 | |
| IS1090 | IS256 | Ralstonia eutropha | 28 | 5.2 | |
| ISAcma50 | IS21 | Acaryochloris marina | 28 | 5.2 | |
| ISAcma38 | IS21 | Acaryochloris marina | 28 | 5.2 | |
| ISAde4 | IS3 | IS407 | Anaeromyxobacter dehalogenans | 28 | 5.2 |
| ISAnsp10 | IS630 | Anaeromyxobacter sp. | 28 | 5.2 | |
| ISMdi27 | IS21 | Methylobacterium dichloromethanicum | 28 | 5.2 | |
| ISMex39 | IS21 | Methylobacterium extorquens | 28 | 5.2 | |
| ISStma11 | ISL3 | Stenotrophomonas maltophilia | 28 | 5.2 | |
| ISCARN70 | IS4 | IS4Sa | Metagenomic data from CARNOULES | 28 | 5.2 |
| ISCARN45 | IS256 | Metagenomic data from CARNOULES | 28 | 5.2 | |
| ISSpe3 | IS3 | IS3 | Shewanella pealeana | 28 | 5.2 |
| ISAzo14 | IS1634 | Azoarcus sp. | 28 | 5.2 | |
| ISThsp9 | Tn3 | Thiomonas sp. | 28 | 5.2 | |
| ISCARN23 | IS1634 | Metagenomic data from CARNOULES | 28 | 5.2 | |
| ISCARN18 | IS110 | IS1111 | Metagenomic data from CARNOULES | 28 | 5.2 |
| ISAnsp3 | IS66 | Anaeromyxobacter sp. | 28 | 5.2 | |
| ISAli16 | IS110 | Azospirillum lipoferum | 28 | 5.2 | |
| ISRusp1 | IS5 | IS903 | Ruegeria sp. | 28 | 5.2 |
| ISPst3 | IS21 | Pseudomonas stutzeri | 28 | 5.2 | |
| ISPla1 | IS1595 | ISPna2 | Parvibaculum lavamentivorans | 28 | 5.2 |
| ISKpn4 | IS110 | IS1111 | Klebsiella pneumoniae | 28 | 5.2 |
| ISBad2 | IS3 | IS150 | Bifidobacterium adolescentis | 28 | 5.2 |
| ISRba6 | IS3 | IS3 | Rhodopirellula baltica | 28 | 5.2 |
| ISMca5 | IS256 | Methylococcus capsulatus | 28 | 5.2 | |
| ISPen1 | IS4 | IS4 | Pseudomonas entomophila | 28 | 5.2 |
| ISMyma3 | IS3 | IS51 | Mycobacterium marinum | 28 | 5.2 |
| ISPst9 | ISL3 | Pseudomonas stutzeri | 28 | 5.2 | |
| ISLxx2 | IS110 | Leifsonia xyli | 28 | 5.2 | |
| ISPpu12 | ISL3 | Pseudomonas putida | 28 | 5.2 | |
| ISXo2 | IS1595 | IS1595 | Xanthomomas oryzae | 28 | 5.2 |
| ISPst2 | ISL3 | - | Pseudomonas stutzeri | 28 | 5.2 |
| IS1539 | IS607 | Mycobacterium tuberculosis | 28 | 5.2 | |
| IS1396 | ISL3 | - | Serratia marcescens | 28 | 5.2 |
| IS1086 | IS30 | - | Ralstonia metallidurans | 28 | 5.2 |
>ISMmg1
Length = 1359
Score = 36.2 bits (18), Expect = 0.021
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 164 gcccatgtggtgcgcacc 181
||||||||||||||||||
Sbjct: 261 gcccatgtggtgcgcacc 244
>TnAs3
Length = 18735
Score = 34.2 bits (17), Expect = 0.084
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 246 cgctgatcgagcgcggc 262
|||||||||||||||||
Sbjct: 2059 cgctgatcgagcgcggc 2075
>ISFK1
Length = 2592
Score = 34.2 bits (17), Expect = 0.084
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 73 cggcgcggtcgatgccc 89
|||||||||||||||||
Sbjct: 1989 cggcgcggtcgatgccc 1973
>ISRm21
Length = 1167
Score = 34.2 bits (17), Expect = 0.084
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 135 ctctcgacgtggtcggc 151
|||||||||||||||||
Sbjct: 723 ctctcgacgtggtcggc 707
>ISGho1
Length = 1618
Score = 32.2 bits (16), Expect = 0.33
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 212 catcgcctgttcgacg 227
||||||||||||||||
Sbjct: 492 catcgcctgttcgacg 477
>ISMch7
Length = 1412
Score = 32.2 bits (16), Expect = 0.33
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 248 ctgatcgagcgcggcg 263
||||||||||||||||
Sbjct: 942 ctgatcgagcgcggcg 927
>TnAs2
Length = 8650
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 248 ctgatcgagcgcggc 262
|||||||||||||||
Sbjct: 2043 ctgatcgagcgcggc 2057
>ISCARN37
Length = 1308
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 228 caccggcctggctcg 242
|||||||||||||||
Sbjct: 191 caccggcctggctcg 205
>ISMra1
Length = 1210
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 213 atcgcctgttcgacg 227
|||||||||||||||
Sbjct: 721 atcgcctgttcgacg 735
>IS3514
Length = 1427
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 152 ctcgacacctttgcc 166
|||||||||||||||
Sbjct: 968 ctcgacacctttgcc 982
>ISMdi13
Length = 1416
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 99 ccgccatcggccgcc 113
|||||||||||||||
Sbjct: 540 ccgccatcggccgcc 554
>ISCARN5
Length = 1367
Score = 30.2 bits (15), Expect = 1.3
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 165 cccatgtggtgcgcaccat 183
|||| ||||||||||||||
Sbjct: 1048 cccaggtggtgcgcaccat 1030
>ISMno3
Length = 1364
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 4 ggccacccgcgtcgg 18
|||||||||||||||
Sbjct: 772 ggccacccgcgtcgg 758
>ISRhru2
Length = 1443
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 245 gcgctgatcgagcgc 259
|||||||||||||||
Sbjct: 131 gcgctgatcgagcgc 145
>ISChy3
Length = 3098
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 140 gacgtggtcggcctc 154
|||||||||||||||
Sbjct: 732 gacgtggtcggcctc 746
>ISEc14
Length = 1271
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 238 gctcgacgcgctgat 252
|||||||||||||||
Sbjct: 891 gctcgacgcgctgat 905
>ISPa61
Length = 1219
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 242 gacgcgctgatcga 255
||||||||||||||
Sbjct: 61 gacgcgctgatcga 48
>ISMex45
Length = 1270
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 251 atcgagcgcggcgc 264
||||||||||||||
Sbjct: 174 atcgagcgcggcgc 161
>ISNamo19
Length = 1897
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 120 gcgccacctaccgc 133
||||||||||||||
Sbjct: 576 gcgccacctaccgc 589
>ISHvo9
Length = 1462
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 136 tctcgacgtggtcg 149
||||||||||||||
Sbjct: 761 tctcgacgtggtcg 774
>ISDere1
Length = 1533
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 227 gcaccggcctggct 240
||||||||||||||
Sbjct: 746 gcaccggcctggct 733
>ISBsa1
Length = 1464
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 252 tcgagcgcggcgcg 265
||||||||||||||
Sbjct: 1356 tcgagcgcggcgcg 1343
>ISLcr1
Length = 1597
Score = 28.2 bits (14), Expect = 5.2
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 92 accggccccgccatcggc 109
|||||| |||||||||||
Sbjct: 894 accggcaccgccatcggc 877
>ISNha9
Length = 1322
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 97 ccccgccatcggcc 110
||||||||||||||
Sbjct: 978 ccccgccatcggcc 991
>ISAzs36
Length = 2622
Score = 28.2 bits (14), Expect = 5.2
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 80 gtcgatgccctcaccggc 97
|||||||||||| |||||
Sbjct: 2287 gtcgatgccctcgccggc 2270
>ISAzs17
Length = 7252
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 78 cggtcgatgccctc 91
||||||||||||||
Sbjct: 5584 cggtcgatgccctc 5571
>ISRel5
Length = 2587
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 229 accggcctggctcg 242
||||||||||||||
Sbjct: 554 accggcctggctcg 541
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 214 tcgcctgttcgacg 227
||||||||||||||
Sbjct: 1201 tcgcctgttcgacg 1214
>ISPko1
Length = 1050
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 144 tggtcggcctcgac 157
||||||||||||||
Sbjct: 311 tggtcggcctcgac 324
>ISMtsp8
Length = 2371
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 77 gcggtcgatgccct 90
||||||||||||||
Sbjct: 1569 gcggtcgatgccct 1582
>ISCde1
Length = 2422
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 168 atgtggtgcgcacc 181
||||||||||||||
Sbjct: 367 atgtggtgcgcacc 380
>IS1090
Length = 1343
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 245 gcgctgatcgagcg 258
||||||||||||||
Sbjct: 180 gcgctgatcgagcg 193
>ISAcma50
Length = 2718
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 20 gtgttttccctgtt 33
||||||||||||||
Sbjct: 2028 gtgttttccctgtt 2015
>ISAcma38
Length = 2708
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 20 gtgttttccctgtt 33
||||||||||||||
Sbjct: 2033 gtgttttccctgtt 2020
>ISAde4
Length = 1183
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 143 gtggtcggcctcga 156
||||||||||||||
Sbjct: 788 gtggtcggcctcga 775
>ISAnsp10
Length = 1185
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 102 ccatcggccgcccg 115
||||||||||||||
Sbjct: 64 ccatcggccgcccg 77
>ISMdi27
Length = 2476
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 111 gcccgcgcagcgcc 124
||||||||||||||
Sbjct: 380 gcccgcgcagcgcc 367
>ISMex39
Length = 2456
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 111 gcccgcgcagcgcc 124
||||||||||||||
Sbjct: 364 gcccgcgcagcgcc 351
>ISStma11
Length = 4621
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 246 cgctgatcgagcgc 259
||||||||||||||
Sbjct: 2879 cgctgatcgagcgc 2866
>ISCARN70
Length = 1312
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 169 tgtggtgcgcacca 182
||||||||||||||
Sbjct: 768 tgtggtgcgcacca 781
>ISCARN45
Length = 1430
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 245 gcgctgatcgagcg 258
||||||||||||||
Sbjct: 201 gcgctgatcgagcg 214
>ISSpe3
Length = 1302
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 209 tggcatcgcctgtt 222
||||||||||||||
Sbjct: 965 tggcatcgcctgtt 952
>ISAzo14
Length = 1925
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 240 tcgacgcgctgatc 253
||||||||||||||
Sbjct: 1227 tcgacgcgctgatc 1240
>ISThsp9
Length = 6215
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 99 ccgccatcggccgc 112
||||||||||||||
Sbjct: 2903 ccgccatcggccgc 2916
>ISCARN23
Length = 1907
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 182 atgcagcgcaccct 195
||||||||||||||
Sbjct: 637 atgcagcgcaccct 650
>ISCARN18
Length = 1561
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 174 tgcgcaccatgcag 187
||||||||||||||
Sbjct: 619 tgcgcaccatgcag 632
>ISAnsp3
Length = 2518
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 252 tcgagcgcggcgcg 265
||||||||||||||
Sbjct: 1962 tcgagcgcggcgcg 1949
>ISAli16
Length = 1153
Score = 28.2 bits (14), Expect = 5.2
Identities = 20/22 (90%)
Strand = Plus / Plus
Query: 237 ggctcgacgcgctgatcgagcg 258
||||||| |||||||||||||
Sbjct: 690 ggctcgaaacgctgatcgagcg 711
>ISRusp1
Length = 1051
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 144 tggtcggcctcgac 157
||||||||||||||
Sbjct: 313 tggtcggcctcgac 326
>ISPst3
Length = 2606
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 241 cgacgcgctgatcg 254
||||||||||||||
Sbjct: 1183 cgacgcgctgatcg 1196
>ISPla1
Length = 1132
Score = 28.2 bits (14), Expect = 5.2
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 86 gccctcaccggccccgcc 103
|||||||||||| |||||
Sbjct: 368 gccctcaccggcaccgcc 385
>ISKpn4
Length = 1377
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 211 gcatcgcctgttcg 224
||||||||||||||
Sbjct: 643 gcatcgcctgttcg 630
>ISBad2
Length = 1470
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 136 tctcgacgtggtcg 149
||||||||||||||
Sbjct: 305 tctcgacgtggtcg 292
>ISRba6
Length = 1309
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 41 gcacaccacaccgc 54
||||||||||||||
Sbjct: 593 gcacaccacaccgc 580
>ISMca5
Length = 1390
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 245 gcgctgatcgagcg 258
||||||||||||||
Sbjct: 195 gcgctgatcgagcg 208
>ISPen1
Length = 1514
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 60 tcggcctgggtttc 73
||||||||||||||
Sbjct: 610 tcggcctgggtttc 623
>ISMyma3
Length = 1364
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 136 tctcgacgtggtcg 149
||||||||||||||
Sbjct: 1197 tctcgacgtggtcg 1184
>ISPst9
Length = 2472
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 166 ccatgtggtgcgca 179
||||||||||||||
Sbjct: 1811 ccatgtggtgcgca 1824
>ISLxx2
Length = 1427
Score = 28.2 bits (14), Expect = 5.2
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 73 cggcgcggtcgatgccct 90
|||||||||||| |||||
Sbjct: 693 cggcgcggtcgaggccct 710
>ISPpu12
Length = 3372
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 166 ccatgtggtgcgca 179
||||||||||||||
Sbjct: 2711 ccatgtggtgcgca 2724
>ISXo2
Length = 1070
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 240 tcgacgcgctgatc 253
||||||||||||||
Sbjct: 248 tcgacgcgctgatc 261
>ISPst2
Length = 2984
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 166 ccatgtggtgcgca 179
||||||||||||||
Sbjct: 2323 ccatgtggtgcgca 2336
>IS1539
Length = 2092
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 74 ggcgcggtcgatgc 87
||||||||||||||
Sbjct: 980 ggcgcggtcgatgc 993
>IS1396
Length = 1771
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 166 ccatgtggtgcgca 179
||||||||||||||
Sbjct: 664 ccatgtggtgcgca 677
>IS1086
Length = 1106
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 106 cggccgcccgcgca 119
||||||||||||||
Sbjct: 979 cggccgcccgcgca 992
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_189_length_264_cov_0.770053_ID_5548
(264 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISRel15 | IS66 | Rhizobium etli | 32 | 0.33 | |
| ISPfr21 | IS481 | Propionibacterium freudenreichii | 32 | 0.33 | |
| ISSod13 | IS481 | Shewanella oneidensis | 32 | 0.33 | |
| ISGsu6 | IS21 | Geobacter sulfurreducens | 32 | 0.33 | |
| ISKpn25 | ISL3 | Klebsiella pneumoniae | 30 | 1.3 | |
| ISCasp2 | ISKra4 | ISKra4 | Calothrix sp. | 30 | 1.3 |
| ISBf7 | IS1380 | IS942 | Bacteroides fragilis | 30 | 1.3 |
| IS231L | IS4 | IS231 | Bacillus anthracis | 30 | 1.3 |
| ISTni2 | IS481 | Thioalkalivibrio nitratireducens | 28 | 5.2 | |
| ISMlo5 | ISNCY | ISDol1 | Mesorhizobium loti | 28 | 5.2 |
| ISMtsp16 | IS481 | Methylobacterium sp. | 28 | 5.2 | |
| ISAar38 | IS5 | IS427 | Arthrobacter arilaitensis | 28 | 5.2 |
| ISMex18 | IS630 | Methylobacterium extorquens | 28 | 5.2 | |
| ISStma12 | IS481 | Stenotrophomonas maltophilia | 28 | 5.2 | |
| ISAcma26 | IS21 | Acaryochloris marina | 28 | 5.2 | |
| ISAli18 | ISL3 | Azospirillum lipoferum | 28 | 5.2 | |
| ISApr6 | IS66 | Alpha proteobacterium | 28 | 5.2 | |
| ISSus3 | IS6 | Solibacter usitatus | 28 | 5.2 | |
| ISGme4 | IS21 | Geobacter metallireducens | 28 | 5.2 | |
| ISDra7 | IS4 | ISPepr1 | Deinococcus radiodurans | 28 | 5.2 |
| ISCsp2 | IS1595 | ISSod11 | Comamonas sp | 28 | 5.2 |
| ISAisp1 | IS1595 | ISSod11 | Acidovorax sp. | 28 | 5.2 |
| ISBmu2 | IS5 | IS5 | Burkholderia multivorans | 28 | 5.2 |
| ISPpu8 | IS4 | IS4 | Pseudomonas putida | 28 | 5.2 |
| IS616 | IS1380 | - | Bacteroides fragilis | 28 | 5.2 |
| IS1420 | IS5 | IS903 | Ralstonia solanacearum | 28 | 5.2 |
| IS1188 | IS1380 | - | Bacteroides fragilis | 28 | 5.2 |
>ISRel15
Length = 2497
Score = 32.2 bits (16), Expect = 0.33
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 3 tcagcttgccgtttac 18
||||||||||||||||
Sbjct: 2482 tcagcttgccgtttac 2497
>ISPfr21
Length = 2632
Score = 32.2 bits (16), Expect = 0.33
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 48 cgcagacgtagccgga 63
||||||||||||||||
Sbjct: 1901 cgcagacgtagccgga 1886
>ISSod13
Length = 1202
Score = 32.2 bits (16), Expect = 0.33
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 239 gcctgggtgcgcggtt 254
||||||||||||||||
Sbjct: 597 gcctgggtgcgcggtt 582
>ISGsu6
Length = 1975
Score = 32.2 bits (16), Expect = 0.33
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 213 cccgttcagcgaaacg 228
||||||||||||||||
Sbjct: 1636 cccgttcagcgaaacg 1651
>ISKpn25
Length = 8154
Score = 30.2 bits (15), Expect = 1.3
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 1 gatcagcttgccgtttacc 19
||||| |||||||||||||
Sbjct: 232 gatcatcttgccgtttacc 250
>ISCasp2
Length = 1773
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 6 gcttgccgtttacca 20
|||||||||||||||
Sbjct: 624 gcttgccgtttacca 610
>ISBf7
Length = 1595
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 249 gcggttggcgcggat 263
|||||||||||||||
Sbjct: 865 gcggttggcgcggat 851
>IS231L
Length = 5396
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 196 tccttgcggttaaaa 210
|||||||||||||||
Sbjct: 1600 tccttgcggttaaaa 1586
>ISTni2
Length = 3451
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 241 ctgggtgcgcggtt 254
||||||||||||||
Sbjct: 557 ctgggtgcgcggtt 570
>ISMlo5
Length = 1664
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 4 cagcttgccgttta 17
||||||||||||||
Sbjct: 24 cagcttgccgttta 11
>ISMtsp16
Length = 1023
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 1 gatcagcttgccgt 14
||||||||||||||
Sbjct: 509 gatcagcttgccgt 496
>ISAar38
Length = 1010
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 222 cgaaacgggaaagg 235
||||||||||||||
Sbjct: 653 cgaaacgggaaagg 640
>ISMex18
Length = 1167
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 193 gtttccttgcggtt 206
||||||||||||||
Sbjct: 17 gtttccttgcggtt 30
>ISStma12
Length = 1023
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 18 ccagccgcagcccc 31
||||||||||||||
Sbjct: 274 ccagccgcagcccc 287
>ISAcma26
Length = 2669
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 141 tatcctgcaggtac 154
||||||||||||||
Sbjct: 472 tatcctgcaggtac 459
>ISAli18
Length = 1752
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 213 cccgttcagcgaaa 226
||||||||||||||
Sbjct: 1409 cccgttcagcgaaa 1422
>ISApr6
Length = 2479
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 248 cgcggttggcgcgg 261
||||||||||||||
Sbjct: 1222 cgcggttggcgcgg 1209
>ISSus3
Length = 823
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 97 aacgaattcgccgt 110
||||||||||||||
Sbjct: 237 aacgaattcgccgt 250
>ISGme4
Length = 1976
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 214 ccgttcagcgaaac 227
||||||||||||||
Sbjct: 1638 ccgttcagcgaaac 1651
>ISDra7
Length = 1322
Score = 28.2 bits (14), Expect = 5.2
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 94 atgaacgaattcgccgtt 111
|||| |||||||||||||
Sbjct: 1254 atgagcgaattcgccgtt 1271
>ISCsp2
Length = 1089
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 147 gcaggtacgcctga 160
||||||||||||||
Sbjct: 779 gcaggtacgcctga 766
>ISAisp1
Length = 1086
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 147 gcaggtacgcctga 160
||||||||||||||
Sbjct: 777 gcaggtacgcctga 764
>ISBmu2
Length = 1210
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 48 cgcagacgtagccg 61
||||||||||||||
Sbjct: 33 cgcagacgtagccg 46
>ISPpu8
Length = 1419
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 235 gaaggcctgggtgc 248
||||||||||||||
Sbjct: 1327 gaaggcctgggtgc 1340
>IS616
Length = 1691
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 2 atcagcttgccgtt 15
||||||||||||||
Sbjct: 706 atcagcttgccgtt 693
>IS1420
Length = 1131
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 129 tgtcgttgcgcgta 142
||||||||||||||
Sbjct: 60 tgtcgttgcgcgta 47
>IS1188
Length = 1691
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 2 atcagcttgccgtt 15
||||||||||||||
Sbjct: 706 atcagcttgccgtt 693
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_190_length_264_cov_0.775401_ID_5550
(264 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISCsp2 | IS1595 | ISSod11 | Comamonas sp | 34 | 0.084 |
| ISAisp1 | IS1595 | ISSod11 | Acidovorax sp. | 34 | 0.084 |
| ISHaru2 | IS200/IS605 | IS1341 | Halobellus rufus | 32 | 0.33 |
| ISAzs2 | IS21 | Azospirillum sp. | 32 | 0.33 | |
| IS900 | IS110 | - | Mycobacterium paratuberculosis | 32 | 0.33 |
| ISAeme2 | ISAs1 | Aeromonas media | 30 | 1.3 | |
| ISKpn27 | IS481 | Klebsiella pneumoniae | 30 | 1.3 | |
| ISAli7 | IS256 | Azospirillum lipoferum | 30 | 1.3 | |
| ISSfl9 | IS4 | IS10 | Shigella flexneri | 30 | 1.3 |
| ISAs2 | IS30 | - | Aeromonas salmonicida | 30 | 1.3 |
| ISAs1 | ISAs1 | - | Aeromonas salmonicida | 30 | 1.3 |
| IS1602 | IS607 | Mycobacterium tuberculosis | 30 | 1.3 | |
| TnAs3 | Tn3 | Aeromonas salmonicida | 28 | 5.2 | |
| ISHme3 | IS200/IS605 | IS1341 | Haloferax mediterranei | 28 | 5.2 |
| ISMno24 | IS91 | Methylobacterium nodulans | 28 | 5.2 | |
| ISBj12 | ISNCY | ISLbi1 | Bradyrhizobium japonicum | 28 | 5.2 |
| ISNpe20 | IS200/IS605 | IS1341 | Natrinema pellirubrum | 28 | 5.2 |
| ISMra4 | IS3 | IS3 | Methylobacterium radiotolerans | 28 | 5.2 |
| ISMtsp8 | IS21 | Methylobacterium sp. | 28 | 5.2 | |
| ISAau5 | ISNCY | Arthrobacter aurescens | 28 | 5.2 | |
| IS693 | IS66 | Rhizobium sp. | 28 | 5.2 | |
| IS692 | IS66 | Agrobacterium tumefaciens | 28 | 5.2 | |
| ISDth1 | IS1380 | Desulfonatronospira thiodismutans | 28 | 5.2 | |
| ISBfun3 | IS1182 | Burkholderia fungorum | 28 | 5.2 | |
| ISAnsp11 | IS3 | IS3 | Anaeromyxobacter sp. | 28 | 5.2 |
| ISBj7_B | IS66 | Bradyrhizobium japonicum | 28 | 5.2 | |
| ISBcen28 | IS21 | Burkholderia cenocepacia | 28 | 5.2 | |
| ISRba3 | IS4 | IS4 | Rhodopirellula baltica | 28 | 5.2 |
| ISSod4 | IS256 | Shewanella oneidensis | 28 | 5.2 | |
| IS1539 | IS607 | Mycobacterium tuberculosis | 28 | 5.2 | |
| IS1538 | IS607 | Mycobacterium tuberculosis | 28 | 5.2 | |
| IS1396 | ISL3 | - | Serratia marcescens | 28 | 5.2 |
>ISCsp2
Length = 1089
Score = 34.2 bits (17), Expect = 0.084
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 221 gccccttgagcttgtcc 237
|||||||||||||||||
Sbjct: 469 gccccttgagcttgtcc 453
>ISAisp1
Length = 1086
Score = 34.2 bits (17), Expect = 0.084
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 221 gccccttgagcttgtcc 237
|||||||||||||||||
Sbjct: 467 gccccttgagcttgtcc 451
>ISHaru2
Length = 1536
Score = 32.2 bits (16), Expect = 0.33
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 99 ccacggcaccgcgccg 114
||||||||||||||||
Sbjct: 1502 ccacggcaccgcgccg 1487
>ISAzs2
Length = 2609
Score = 32.2 bits (16), Expect = 0.33
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 29 acaagcccagcgccga 44
||||||||||||||||
Sbjct: 925 acaagcccagcgccga 940
>IS900
Length = 1451
Score = 32.2 bits (16), Expect = 0.33
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 113 cgtcgggggcgtttga 128
||||||||||||||||
Sbjct: 1218 cgtcgggggcgtttga 1203
>ISAeme2
Length = 1212
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 199 acaatgcagcgcaga 213
|||||||||||||||
Sbjct: 322 acaatgcagcgcaga 308
>ISKpn27
Length = 1080
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 10 acaaagcccggctcg 24
|||||||||||||||
Sbjct: 520 acaaagcccggctcg 506
>ISAli7
Length = 1416
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 86 tgggcacgctgaacc 100
|||||||||||||||
Sbjct: 356 tgggcacgctgaacc 370
>ISSfl9
Length = 1304
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 163 tcgggcgagcagaag 177
|||||||||||||||
Sbjct: 997 tcgggcgagcagaag 1011
>ISAs2
Length = 1084
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 6 gccgacaaagcccgg 20
|||||||||||||||
Sbjct: 448 gccgacaaagcccgg 462
>ISAs1
Length = 1212
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 199 acaatgcagcgcaga 213
|||||||||||||||
Sbjct: 322 acaatgcagcgcaga 308
>IS1602
Length = 2053
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 104 gcaccgcgccgtcgg 118
|||||||||||||||
Sbjct: 1364 gcaccgcgccgtcgg 1350
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 125 ttgacggcggcccc 138
||||||||||||||
Sbjct: 1914 ttgacggcggcccc 1901
>TnAs3
Length = 18735
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 29 acaagcccagcgcc 42
||||||||||||||
Sbjct: 4937 acaagcccagcgcc 4924
>ISHme3
Length = 1530
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 15 gcccggctcgatac 28
||||||||||||||
Sbjct: 239 gcccggctcgatac 226
>ISMno24
Length = 2157
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 68 agcccgcgtgccgc 81
||||||||||||||
Sbjct: 231 agcccgcgtgccgc 244
>ISBj12
Length = 1743
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 70 cccgcgtgccgccg 83
||||||||||||||
Sbjct: 523 cccgcgtgccgccg 510
>ISNpe20
Length = 1529
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 235 tccgaccatttcgc 248
||||||||||||||
Sbjct: 946 tccgaccatttcgc 933
>ISMra4
Length = 1237
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 31 aagcccagcgccga 44
||||||||||||||
Sbjct: 1167 aagcccagcgccga 1154
>ISMtsp8
Length = 2371
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 209 gcagacggtcctgc 222
||||||||||||||
Sbjct: 645 gcagacggtcctgc 658
>ISAau5
Length = 3989
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 15 gcccggctcgatac 28
||||||||||||||
Sbjct: 3096 gcccggctcgatac 3109
>IS693
Length = 3078
Score = 28.2 bits (14), Expect = 5.2
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 201 aatgcagcgcagacggtc 218
|||||||||||| |||||
Sbjct: 708 aatgcagcgcagccggtc 691
>IS692
Length = 2563
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 9 gacaaagcccggct 22
||||||||||||||
Sbjct: 164 gacaaagcccggct 177
>ISDth1
Length = 1673
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 146 tgaactccatgagc 159
||||||||||||||
Sbjct: 372 tgaactccatgagc 385
>ISBfun3
Length = 1627
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 8 cgacaaagcccggc 21
||||||||||||||
Sbjct: 51 cgacaaagcccggc 38
>ISAnsp11
Length = 1510
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 100 cacggcaccgcgcc 113
||||||||||||||
Sbjct: 1419 cacggcaccgcgcc 1406
>ISBj7_B
Length = 2865
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 212 gacggtcctgcccc 225
||||||||||||||
Sbjct: 1997 gacggtcctgcccc 2010
>ISBcen28
Length = 2311
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 209 gcagacggtcctgc 222
||||||||||||||
Sbjct: 634 gcagacggtcctgc 647
>ISRba3
Length = 1667
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 224 ccttgagcttgtcc 237
||||||||||||||
Sbjct: 404 ccttgagcttgtcc 391
>ISSod4
Length = 1293
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 18 cggctcgatacaca 31
||||||||||||||
Sbjct: 895 cggctcgatacaca 882
>IS1539
Length = 2092
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 125 ttgacggcggcccc 138
||||||||||||||
Sbjct: 1950 ttgacggcggcccc 1937
>IS1538
Length = 2090
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 125 ttgacggcggcccc 138
||||||||||||||
Sbjct: 1948 ttgacggcggcccc 1935
>IS1396
Length = 1771
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 239 accatttcgctggc 252
||||||||||||||
Sbjct: 1668 accatttcgctggc 1681
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_191_length_264_cov_0.780749_ID_5552
(264 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| IS1602 | IS607 | Mycobacterium tuberculosis | 34 | 0.084 | |
| IS1162 | IS21 | - | Pseudomonas fluorescens | 34 | 0.084 |
| ISPa43 | Tn3 | Pseudomonas aeruginosa | 30 | 1.3 | |
| ISSen2 | IS5 | IS427 | Salmonella enterica | 30 | 1.3 |
| ISThsp5 | IS21 | Thiomonas sp. | 30 | 1.3 | |
| ISCc1 | IS5 | IS427 | Caulobacter crescentus | 30 | 1.3 |
| IS987 | IS3 | IS51 | Mycobacterium bovis | 30 | 1.3 |
| IS986 | IS3 | IS51 | Mycobacterium tuberculosis | 30 | 1.3 |
| IS6110 | IS3 | IS51 | Mycobacterium tuberculosis | 30 | 1.3 |
| ISTha3 | IS91 | Thauera sp. | 28 | 5.2 | |
| TnAs3 | Tn3 | Aeromonas salmonicida | 28 | 5.2 | |
| TnAs2 | Tn3 | Aeromonas salmonicida | 28 | 5.2 | |
| ISPebe1 | IS256 | Pelagibaca bermudensis | 28 | 5.2 | |
| ISPa41 | IS5 | IS5 | Pseudomonas aeruginosa | 28 | 5.2 |
| ISAba16 | IS66 | Acinetobacter baumannii | 28 | 5.2 | |
| ISAzs20 | IS66 | Azospirillum sp. | 28 | 5.2 | |
| ISAzs14 | IS630 | Azospirillum sp. | 28 | 5.2 | |
| ISNph12 | IS200/IS605 | IS1341 | Natronomonas pharaonis | 28 | 5.2 |
| ISRel24 | IS66 | Rhizobium etli | 28 | 5.2 | |
| ISSyth2 | IS1182 | Symbiobacterium thermophilum | 28 | 5.2 | |
| ISMno17 | IS1182 | Methylobacterium nodulans | 28 | 5.2 | |
| ISArsp6 | Tn3 | Arthrobacter sp. | 28 | 5.2 | |
| ISCph8 | IS1380 | Chlorobium phaeobacteroides | 28 | 5.2 | |
| ISPelu1 | IS1380 | Pelodictyon luteolum | 28 | 5.2 | |
| ISApr10 | IS256 | Alpha proteobacterium | 28 | 5.2 | |
| ISMex35 | IS5 | IS5 | Methylobacterium extorquens | 28 | 5.2 |
| ISMex17 | IS110 | Methylobacterium extorquens | 28 | 5.2 | |
| ISAnsp4 | IS21 | Anaeromyxobacter sp. | 28 | 5.2 | |
| ISThsp9 | Tn3 | Thiomonas sp. | 28 | 5.2 | |
| ISAzo12 | IS21 | Azoarcus sp. | 28 | 5.2 | |
| ISCARN27 | IS256 | Metagenomic data from CARNOULES | 28 | 5.2 | |
| ISKrh1 | IS481 | Kocuria rhizophila | 28 | 5.2 | |
| ISAli13 | IS21 | Azospirillum lipoferum | 28 | 5.2 | |
| ISAli2 | IS630 | Azospirillum lipoferum | 28 | 5.2 | |
| ISFsp10 | IS66 | ISBst12 | Frankia sp. | 28 | 5.2 |
| ISAau4 | Tn3 | Arthrobacter aurescens | 28 | 5.2 | |
| ISRsp3 | IS21 | Rhizobium sp. | 28 | 5.2 | |
| ISSde5 | IS256 | Shewanella denitrificans | 28 | 5.2 | |
| ISSer1 | IS110 | Saccharopolyspora erythraea | 28 | 5.2 | |
| ISNha4 | IS3 | IS407 | Nitrobacter hamburgensis | 28 | 5.2 |
| ISGvi2 | IS4 | IS50 | Gloeobacter violaceus | 28 | 5.2 |
| ISBlo10 | IS3 | Bifidobacterium longum | 28 | 5.2 | |
| ISPa42 | Tn3 | Pseudomonas aeruginosa | 28 | 5.2 | |
| IS902 | IS110 | - | Mycobacterium avium | 28 | 5.2 |
>IS1602
Length = 2053
Score = 34.2 bits (17), Expect = 0.084
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 177 cgaagcggcgctggccg 193
|||||||||||||||||
Sbjct: 458 cgaagcggcgctggccg 474
>IS1162
Length = 2634
Score = 34.2 bits (17), Expect = 0.084
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 182 cggcgctggccgtgctg 198
|||||||||||||||||
Sbjct: 389 cggcgctggccgtgctg 405
>ISPa43
Length = 19903
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 181 gcggcgctggccgtg 195
|||||||||||||||
Sbjct: 10371 gcggcgctggccgtg 10357
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 111 agccgatgccgccgt 125
|||||||||||||||
Sbjct: 19013 agccgatgccgccgt 18999
>ISSen2
Length = 846
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 78 cgccggcagcgcctc 92
|||||||||||||||
Sbjct: 566 cgccggcagcgcctc 552
>ISThsp5
Length = 2652
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 152 cgacgctgagcgcgc 166
|||||||||||||||
Sbjct: 1472 cgacgctgagcgcgc 1458
>ISCc1
Length = 848
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 233 cgctggcgcgcggcg 247
|||||||||||||||
Sbjct: 381 cgctggcgcgcggcg 395
>IS987
Length = 1355
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 176 ccgaagcggcgctgg 190
|||||||||||||||
Sbjct: 778 ccgaagcggcgctgg 764
>IS986
Length = 1354
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 176 ccgaagcggcgctgg 190
|||||||||||||||
Sbjct: 777 ccgaagcggcgctgg 763
>IS6110
Length = 1354
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 176 ccgaagcggcgctgg 190
|||||||||||||||
Sbjct: 778 ccgaagcggcgctgg 764
>ISTha3
Length = 2424
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 235 ctggcgcgcggcgc 248
||||||||||||||
Sbjct: 1220 ctggcgcgcggcgc 1207
>TnAs3
Length = 18735
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 10 ctgcgtgtgctgca 23
||||||||||||||
Sbjct: 14876 ctgcgtgtgctgca 14889
>TnAs2
Length = 8650
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 10 ctgcgtgtgctgca 23
||||||||||||||
Sbjct: 4784 ctgcgtgtgctgca 4797
>ISPebe1
Length = 1363
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 243 cggcgccaagaccg 256
||||||||||||||
Sbjct: 207 cggcgccaagaccg 220
>ISPa41
Length = 1168
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 153 gacgctgagcgcgc 166
||||||||||||||
Sbjct: 338 gacgctgagcgcgc 351
>ISAba16
Length = 2552
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 44 agaacaccgccgcg 57
||||||||||||||
Sbjct: 2100 agaacaccgccgcg 2113
>ISAzs20
Length = 2811
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 249 caagaccgacaccg 262
||||||||||||||
Sbjct: 1730 caagaccgacaccg 1743
>ISAzs14
Length = 1176
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 207 ctcgccgcgggcga 220
||||||||||||||
Sbjct: 167 ctcgccgcgggcga 154
>ISNph12
Length = 1424
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 2 acgaacgcctgcgt 15
||||||||||||||
Sbjct: 771 acgaacgcctgcgt 784
>ISRel24
Length = 2837
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 107 tgcaagccgatgcc 120
||||||||||||||
Sbjct: 1826 tgcaagccgatgcc 1839
>ISSyth2
Length = 1687
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 82 ggcagcgcctcgca 95
||||||||||||||
Sbjct: 1346 ggcagcgcctcgca 1359
>ISMno17
Length = 1534
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 80 ccggcagcgcctcg 93
||||||||||||||
Sbjct: 1142 ccggcagcgcctcg 1155
>ISArsp6
Length = 26712
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 75 ggacgccggcagcg 88
||||||||||||||
Sbjct: 7230 ggacgccggcagcg 7217
>ISCph8
Length = 1755
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 70 cgcatggacgccgg 83
||||||||||||||
Sbjct: 799 cgcatggacgccgg 812
>ISPelu1
Length = 1742
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 70 cgcatggacgccgg 83
||||||||||||||
Sbjct: 799 cgcatggacgccgg 812
>ISApr10
Length = 1366
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 118 gccgccgtggccca 131
||||||||||||||
Sbjct: 678 gccgccgtggccca 691
>ISMex35
Length = 1294
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 108 gcaagccgatgccg 121
||||||||||||||
Sbjct: 951 gcaagccgatgccg 964
>ISMex17
Length = 1132
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 245 gcgccaagaccgac 258
||||||||||||||
Sbjct: 454 gcgccaagaccgac 467
>ISAnsp4
Length = 2195
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 206 gctcgccgcgggcg 219
||||||||||||||
Sbjct: 1466 gctcgccgcgggcg 1453
>ISThsp9
Length = 6215
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 235 ctggcgcgcggcgc 248
||||||||||||||
Sbjct: 1497 ctggcgcgcggcgc 1510
>ISAzo12
Length = 3075
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 204 gcgctcgccgcggg 217
||||||||||||||
Sbjct: 2702 gcgctcgccgcggg 2715
>ISCARN27
Length = 1356
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 139 tcggatctggccac 152
||||||||||||||
Sbjct: 968 tcggatctggccac 981
>ISKrh1
Length = 2854
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 187 ctggccgtgctgct 200
||||||||||||||
Sbjct: 968 ctggccgtgctgct 981
>ISAli13
Length = 2756
Score = 28.2 bits (14), Expect = 5.2
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 203 ggcgctcgccgcgggcga 220
|||||||||||| |||||
Sbjct: 2000 ggcgctcgccgctggcga 2017
>ISAli2
Length = 1171
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 236 tggcgcgcggcgcc 249
||||||||||||||
Sbjct: 714 tggcgcgcggcgcc 701
>ISFsp10
Length = 1713
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 207 ctcgccgcgggcga 220
||||||||||||||
Sbjct: 1261 ctcgccgcgggcga 1248
>ISAau4
Length = 3898
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 45 gaacaccgccgcgt 58
||||||||||||||
Sbjct: 1466 gaacaccgccgcgt 1453
>ISRsp3
Length = 2489
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 180 agcggcgctggccg 193
||||||||||||||
Sbjct: 1647 agcggcgctggccg 1634
>ISSde5
Length = 1292
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 175 accgaagcggcgct 188
||||||||||||||
Sbjct: 160 accgaagcggcgct 173
>ISSer1
Length = 1447
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 243 cggcgccaagaccg 256
||||||||||||||
Sbjct: 920 cggcgccaagaccg 933
>ISNha4
Length = 1266
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 243 cggcgccaagaccg 256
||||||||||||||
Sbjct: 944 cggcgccaagaccg 957
>ISGvi2
Length = 1487
Score = 28.2 bits (14), Expect = 5.2
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 231 gacgctggcgcgcggcgc 248
|||| |||||||||||||
Sbjct: 729 gacgttggcgcgcggcgc 712
>ISBlo10
Length = 1339
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 58 ttgttgcgccaacg 71
||||||||||||||
Sbjct: 216 ttgttgcgccaacg 203
>ISPa42
Length = 16941
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 114 cgatgccgccgtgg 127
||||||||||||||
Sbjct: 9851 cgatgccgccgtgg 9864
>IS902
Length = 1470
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 203 ggcgctcgccgcgg 216
||||||||||||||
Sbjct: 873 ggcgctcgccgcgg 886
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_192_length_264_cov_0.780749_ID_5554
(264 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISSaen1 | IS110 | IS1111 | Salmonella enteritidis | 34 | 0.084 |
| ISSoc6 | IS200/IS605 | Synechococcus sp. | 32 | 0.33 | |
| TnXo19 | Tn3 | Xanthomonas oryzae | 30 | 1.3 | |
| ISRsp3 | IS21 | Rhizobium sp. | 30 | 1.3 | |
| IS231I | IS4 | IS231 | Bacillus thuringiensis | 30 | 1.3 |
| ISKpn2 | IS110 | IS1111 | Klebsiella pneumoniae | 30 | 1.3 |
| ISHaru2 | IS200/IS605 | IS1341 | Halobellus rufus | 28 | 5.2 |
| ISHwa26 | IS200/IS605 | Haloquadratum walsbyi | 28 | 5.2 | |
| ISHwa22 | IS200/IS605 | IS1341 | Haloquadratum walsbyi | 28 | 5.2 |
| ISHwa21 | IS200/IS605 | IS1341 | Haloquadratum walsbyi | 28 | 5.2 |
| ISNma19 | IS200/IS605 | IS1341 | Natrialba magadii | 28 | 5.2 |
| ISNma18 | IS200/IS605 | IS1341 | Natrialba magadii | 28 | 5.2 |
| ISHli3 | IS200/IS605 | IS1341 | Halohasta litchfieldiae | 28 | 5.2 |
| ISTel2 | IS200/IS605 | Thermosynechococcus elongatus | 28 | 5.2 | |
| ISSpn7 | IS5 | ISL2 | Streptococcus pneumoniae | 28 | 5.2 |
| ISMsi3 | IS3 | IS407 | Methylocella silvestris | 28 | 5.2 |
| ISDha9 | IS1634 | Desulfitobacterium hafniense | 28 | 5.2 | |
| ISPg7 | IS5 | IS5 | Porphyromonas gingivalis | 28 | 5.2 |
| ISPlsp1 | IS3 | IS150 | Polynucleobacter sp. | 28 | 5.2 |
| IS21 | IS21 | - | Pseudomonas aeruginosa | 28 | 5.2 |
| IS1406 | IS5 | Pseudomonas sp. | 28 | 5.2 | |
| IS1381 | IS5 | ISL2 | Streptococcus pneumoniae | 28 | 5.2 |
>ISSaen1
Length = 1294
Score = 34.2 bits (17), Expect = 0.084
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 88 gccatgcagcaaaatggcgac 108
||||||||||||| |||||||
Sbjct: 809 gccatgcagcaaagtggcgac 789
>ISSoc6
Length = 1806
Score = 32.2 bits (16), Expect = 0.33
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 139 ttggtcaacgctgatg 154
||||||||||||||||
Sbjct: 1642 ttggtcaacgctgatg 1657
>TnXo19
Length = 18767
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 211 agaagcgcgtatcaa 225
|||||||||||||||
Sbjct: 5319 agaagcgcgtatcaa 5333
>ISRsp3
Length = 2489
Score = 30.2 bits (15), Expect = 1.3
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 239 gcgctcctgcgtcaacttc 257
|||||| ||||||||||||
Sbjct: 1882 gcgctcgtgcgtcaacttc 1900
>IS231I
Length = 1649
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 246 tgcgtcaacttcttt 260
|||||||||||||||
Sbjct: 1265 tgcgtcaacttcttt 1279
>ISKpn2
Length = 1306
Score = 30.2 bits (15), Expect = 1.3
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 88 gccatgcagcaaaatggcg 106
||||||||||||| |||||
Sbjct: 809 gccatgcagcaaagtggcg 791
>ISHaru2
Length = 1536
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 143 tcaacgctgatgtg 156
||||||||||||||
Sbjct: 1292 tcaacgctgatgtg 1305
>ISHwa26
Length = 1570
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 143 tcaacgctgatgtg 156
||||||||||||||
Sbjct: 1325 tcaacgctgatgtg 1338
>ISHwa22
Length = 1541
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 143 tcaacgctgatgtg 156
||||||||||||||
Sbjct: 1294 tcaacgctgatgtg 1307
>ISHwa21
Length = 1590
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 143 tcaacgctgatgtg 156
||||||||||||||
Sbjct: 1340 tcaacgctgatgtg 1353
>ISNma19
Length = 1576
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 143 tcaacgctgatgtg 156
||||||||||||||
Sbjct: 1332 tcaacgctgatgtg 1345
>ISNma18
Length = 1531
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 143 tcaacgctgatgtg 156
||||||||||||||
Sbjct: 1287 tcaacgctgatgtg 1300
>ISHli3
Length = 1526
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 143 tcaacgctgatgtg 156
||||||||||||||
Sbjct: 1296 tcaacgctgatgtg 1309
>ISTel2
Length = 1675
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 102 tggcgacttctcga 115
||||||||||||||
Sbjct: 290 tggcgacttctcga 303
>ISSpn7
Length = 856
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 162 taagaaggtcttct 175
||||||||||||||
Sbjct: 203 taagaaggtcttct 190
>ISMsi3
Length = 1107
Score = 28.2 bits (14), Expect = 5.2
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 86 ccgccatgcagcaaaatg 103
||||||||||||| ||||
Sbjct: 678 ccgccatgcagcacaatg 695
>ISDha9
Length = 1860
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 172 ttctgactaaatga 185
||||||||||||||
Sbjct: 1682 ttctgactaaatga 1669
>ISPg7
Length = 1428
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 18 aaatgagttctatc 31
||||||||||||||
Sbjct: 476 aaatgagttctatc 463
>ISPlsp1
Length = 1446
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 55 agtgcttttgctgg 68
||||||||||||||
Sbjct: 550 agtgcttttgctgg 537
>IS21
Length = 2131
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 80 cgacatccgccatg 93
||||||||||||||
Sbjct: 1004 cgacatccgccatg 1017
>IS1406
Length = 1214
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 163 aagaaggtcttctg 176
||||||||||||||
Sbjct: 105 aagaaggtcttctg 92
>IS1381
Length = 846
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 162 taagaaggtcttct 175
||||||||||||||
Sbjct: 185 taagaaggtcttct 172
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_193_length_264_cov_1.14973_ID_5556
(264 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISRfsp1 | IS66 | ISBst12 | Roseiflexus sp. | 36 | 0.021 |
| ISTth2 | IS4 | IS10 | Thermus thermophilus | 32 | 0.33 |
| ISHli10 | IS630 | Halohasta litchfieldiae | 30 | 1.3 | |
| ISAmi2 | IS5 | ISL2 | Actinosynnema mirum | 30 | 1.3 |
| ISAnsp13 | ISAs1 | Anaeromyxobacter sp. | 30 | 1.3 | |
| IS885 | IS630 | Ralstonia eutropha | 30 | 1.3 | |
| ISRsp12 | Tn3 | Rhizhobium sp. | 28 | 5.2 | |
| ISMno24 | IS91 | Methylobacterium nodulans | 28 | 5.2 | |
| ISPsp9 | IS1380 | Pseudomonas sp. | 28 | 5.2 | |
| ISUnCu7 | ISKra4 | ISAzba1 | Uncultured bacterium | 28 | 5.2 |
| ISH31 | ISH6 | Halobacterium sp. | 28 | 5.2 | |
| ISAzs29 | Tn3 | Azospirillum sp. | 28 | 5.2 | |
| ISRel25 | IS110 | Rhizobium etli | 28 | 5.2 | |
| ISGau7 | IS21 | Gemmatimonas aurantiaca | 28 | 5.2 | |
| ISPth1 | IS5 | IS903 | Paracoccus thiocyanatus | 28 | 5.2 |
| ISMno33 | IS1182 | Methylobacterium nodulans | 28 | 5.2 | |
| ISMesp2 | IS1380 | Mesorhizobium sp. | 28 | 5.2 | |
| ISAde1 | IS66 | Anaeromyxobacter dehalogenans | 28 | 5.2 | |
| ISCARN22 | IS66 | Metagenomic data from CARNOULES | 28 | 5.2 | |
| ISGdi12 | IS701 | Gluconacetobacter diazotrophicus | 28 | 5.2 | |
| ISAau4 | Tn3 | Arthrobacter aurescens | 28 | 5.2 | |
| ISBxe3 | IS481 | Burkholderia xenovorans | 28 | 5.2 | |
| ISRde3 | IS3 | IS407 | Roseobacter denitrificans | 28 | 5.2 |
| ISBxe2 | IS3 | IS3 | Burkholderia xenovorans | 28 | 5.2 |
| ISGvi5 | IS3 | IS3 | Gloeobacter violaceus | 28 | 5.2 |
| ISAtu2 | IS5 | IS5 | Agrobacterium tumefaciens | 28 | 5.2 |
| ISHla10 | ISH6 | Halorubrum lacusprofundi | 28 | 5.2 | |
| IS1476 | ISL3 | - | Enterococcus faecium | 28 | 5.2 |
>ISRfsp1
Length = 1503
Score = 36.2 bits (18), Expect = 0.021
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 192 cttcgccacgctgcgcga 209
||||||||||||||||||
Sbjct: 1435 cttcgccacgctgcgcga 1452
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 144 caccgccgccgcca 157
||||||||||||||
Sbjct: 733 caccgccgccgcca 720
>ISTth2
Length = 1184
Score = 32.2 bits (16), Expect = 0.33
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 12 gggcgaggagggggag 27
||||||||||||||||
Sbjct: 337 gggcgaggagggggag 322
>ISHli10
Length = 1055
Score = 30.2 bits (15), Expect = 1.3
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 167 tcctcaaggaagagggtct 185
|||||||||||| ||||||
Sbjct: 446 tcctcaaggaagcgggtct 464
>ISAmi2
Length = 942
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 142 gacaccgccgccgcc 156
|||||||||||||||
Sbjct: 616 gacaccgccgccgcc 630
>ISAnsp13
Length = 1367
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 203 tgcgcgaactgtacg 217
|||||||||||||||
Sbjct: 878 tgcgcgaactgtacg 892
>IS885
Length = 1100
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 147 cgccgccgccacgct 161
|||||||||||||||
Sbjct: 164 cgccgccgccacgct 150
>ISRsp12
Length = 3701
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 194 tcgccacgctgcgc 207
||||||||||||||
Sbjct: 3214 tcgccacgctgcgc 3201
>ISMno24
Length = 2157
Score = 28.2 bits (14), Expect = 5.2
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 144 caccgccgccgccacgct 161
||||||||||| ||||||
Sbjct: 873 caccgccgccgacacgct 856
>ISPsp9
Length = 1718
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 150 cgccgccacgctga 163
||||||||||||||
Sbjct: 1371 cgccgccacgctga 1384
>ISUnCu7
Length = 2273
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 137 ccgaagacaccgcc 150
||||||||||||||
Sbjct: 1802 ccgaagacaccgcc 1815
>ISH31
Length = 1445
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 138 cgaagacaccgccg 151
||||||||||||||
Sbjct: 706 cgaagacaccgccg 719
>ISAzs29
Length = 3897
Score = 28.2 bits (14), Expect = 5.2
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 147 cgccgccgccacgctgaa 164
||||||||||| ||||||
Sbjct: 1394 cgccgccgccaagctgaa 1411
>ISRel25
Length = 1638
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 200 cgctgcgcgaactg 213
||||||||||||||
Sbjct: 677 cgctgcgcgaactg 664
>ISGau7
Length = 2510
Score = 28.2 bits (14), Expect = 5.2
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 142 gacaccgccgccgccacg 159
||||||||||||| ||||
Sbjct: 2307 gacaccgccgccgtcacg 2324
>ISPth1
Length = 1054
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 144 caccgccgccgcca 157
||||||||||||||
Sbjct: 488 caccgccgccgcca 501
>ISMno33
Length = 1767
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 137 ccgaagacaccgcc 150
||||||||||||||
Sbjct: 106 ccgaagacaccgcc 119
>ISMesp2
Length = 1618
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 193 ttcgccacgctgcg 206
||||||||||||||
Sbjct: 1320 ttcgccacgctgcg 1333
>ISAde1
Length = 2957
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 165 gatcctcaaggaag 178
||||||||||||||
Sbjct: 2669 gatcctcaaggaag 2682
>ISCARN22
Length = 2674
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 222 gcaggttgttctgc 235
||||||||||||||
Sbjct: 2324 gcaggttgttctgc 2311
>ISGdi12
Length = 1419
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 237 cgcaggcaaaggct 250
||||||||||||||
Sbjct: 721 cgcaggcaaaggct 734
>ISAau4
Length = 3898
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 143 acaccgccgccgcc 156
||||||||||||||
Sbjct: 2968 acaccgccgccgcc 2981
>ISBxe3
Length = 1279
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 146 ccgccgccgccacg 159
||||||||||||||
Sbjct: 454 ccgccgccgccacg 467
>ISRde3
Length = 908
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 153 cgccacgctgaaga 166
||||||||||||||
Sbjct: 254 cgccacgctgaaga 267
>ISBxe2
Length = 1287
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 189 gcacttcgccacgc 202
||||||||||||||
Sbjct: 1097 gcacttcgccacgc 1110
>ISGvi5
Length = 1287
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 195 cgccacgctgcgcg 208
||||||||||||||
Sbjct: 564 cgccacgctgcgcg 577
>ISAtu2
Length = 1353
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 153 cgccacgctgaaga 166
||||||||||||||
Sbjct: 972 cgccacgctgaaga 985
>ISHla10
Length = 1444
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 138 cgaagacaccgccg 151
||||||||||||||
Sbjct: 705 cgaagacaccgccg 718
>IS1476
Length = 1500
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 208 gaactgtacgaaaa 221
||||||||||||||
Sbjct: 488 gaactgtacgaaaa 501
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_194_length_264_cov_1.29412_ID_5558
(264 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISRde3 | IS3 | IS407 | Roseobacter denitrificans | 34 | 0.084 |
| ISEc8 | IS66 | Escherichia coli | 34 | 0.084 | |
| ISHsp2 | IS630 | Halomonas sp. | 34 | 0.084 | |
| IS476 | IS3 | IS407 | Xanthomonas campestris | 34 | 0.084 |
| ISBph2 | IS5 | Burkholderia phymatum | 32 | 0.33 | |
| ISMaq5 | ISNCY | ISDol1 | Marinobacter aquaeolei | 32 | 0.33 |
| ISGbr1 | IS1380 | Gordonia bronchialis | 32 | 0.33 | |
| ISFsp6 | IS4 | IS4 | Frankia sp. | 32 | 0.33 |
| IS1070 | IS30 | - | Leuconostoc lactis | 32 | 0.33 |
| Tn5403 | Tn3 | Klebsiella pneumoniae | 30 | 1.3 | |
| ISHli14 | IS200/IS605 | IS1341 | Halohasta litchfieldiae | 30 | 1.3 |
| ISPsp6 | IS5 | IS5 | Pseudomonas sp. | 30 | 1.3 |
| ISMra6 | IS5 | IS427 | Methylobacterium radiotolerans | 30 | 1.3 |
| ISRm17 | ISNCY | ISDol1 | Sinorhizobium meliloti | 30 | 1.3 |
| ISMlo5 | ISNCY | ISDol1 | Mesorhizobium loti | 30 | 1.3 |
| ISMpo6 | IS1182 | Methylobacterium populi | 30 | 1.3 | |
| ISStma9 | IS3 | IS51 | Stenotrophomonas maltophilia | 30 | 1.3 |
| ISCARN26 | IS110 | Metagenomic data from CARNOULES | 30 | 1.3 | |
| ISXc8 | IS3 | IS3 | Xanthomonas campestris | 30 | 1.3 |
| ISXo14 | IS4 | IS10 | Xanthomonas oryzae | 30 | 1.3 |
| ISXac1 | IS4 | IS10 | Xanthomonas axonopodis | 30 | 1.3 |
| ISSfr1 | IS110 | IS1111 | Sinorhizobium fredii | 30 | 1.3 |
| ISXc4 | Tn3 | - | Xanthomonas campestris | 30 | 1.3 |
| ISXaca1 | IS4 | IS10 | Xanthomonas campestris | 30 | 1.3 |
| ISVsa3 | IS91 | - | Vibrio salmonicida | 30 | 1.3 |
| IS481v2 | IS481 | - | Bordetella pertussis | 30 | 1.3 |
| IS481v1 | IS481 | - | Bordetella pertussis | 30 | 1.3 |
| IS481 | IS481 | Bordetella pertussis | 30 | 1.3 | |
| ISPsy34 | IS66 | Pseudomonas syringae | 28 | 5.2 | |
| ISXci1 | IS21 | Xanthomonas citri | 28 | 5.2 | |
| ISIde2 | IS21 | Ideonella dechloratans | 28 | 5.2 | |
| ISSoEn1 | IS5 | IS903 | Primary endosymbiont of Sitophilus oryzae | 28 | 5.2 |
| ISAzs17 | Tn3 | Azospirillum sp. | 28 | 5.2 | |
| ISSgl1 | IS5 | IS903 | Sodalis glossinidius | 28 | 5.2 |
| ISPfr6 | ISL3 | Propionibacterium freudenreichii | 28 | 5.2 | |
| ISSpu19 | IS1380 | Shewanella putrefaciens | 28 | 5.2 | |
| ISMsi4 | IS3 | IS407 | Methylocella silvestris | 28 | 5.2 |
| ISMsi2 | IS3 | IS407 | Methylocella silvestris | 28 | 5.2 |
| ISThsp15 | IS630 | Thiomonas sp. | 28 | 5.2 | |
| ISThsp7 | IS1634 | Thiomonas sp. | 28 | 5.2 | |
| ISGdi12 | IS701 | Gluconacetobacter diazotrophicus | 28 | 5.2 | |
| ISvNY2A_2 | IS607 | Virus NY2A | 28 | 5.2 | |
| ISBcen14 | IS66 | Burkholderia cenocepacia | 28 | 5.2 | |
| ISBmu1 | IS21 | Burkholderia multivorans | 28 | 5.2 | |
| ISUnCu1 | IS110 | IS1111 | Uncultured bacterium | 28 | 5.2 |
| ISAzvi2 | IS110 | IS1111 | Azotobacter vinelandii | 28 | 5.2 |
| ISPa11 | IS110 | IS1111 | Pseudomonas aeruginosa | 28 | 5.2 |
| ISPsy14 | IS21 | Pseudomonas syringae | 28 | 5.2 | |
| IS6100 | IS6 | - | Mycobacterium fortuitum | 28 | 5.2 |
| IS1646 | IS5 | IS5 | Xanthomonas campestris | 28 | 5.2 |
| IS1479 | IS5 | IS5 | Xanthomonas campestris | 28 | 5.2 |
>ISRde3
Length = 908
Score = 34.2 bits (17), Expect = 0.084
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 110 cgtcgatgacattcagc 126
|||||||||||||||||
Sbjct: 457 cgtcgatgacattcagc 441
>ISEc8
Length = 2442
Score = 34.2 bits (17), Expect = 0.084
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 49 aggcgcagctggcgatg 65
|||||||||||||||||
Sbjct: 738 aggcgcagctggcgatg 754
>ISHsp2
Length = 1078
Score = 34.2 bits (17), Expect = 0.084
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 228 cagtatctcaatcagat 244
|||||||||||||||||
Sbjct: 951 cagtatctcaatcagat 935
>IS476
Length = 1226
Score = 34.2 bits (17), Expect = 0.084
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 130 ggctggtcgagctggcc 146
|||||||||||||||||
Sbjct: 479 ggctggtcgagctggcc 495
>ISBph2
Length = 1335
Score = 32.2 bits (16), Expect = 0.33
Identities = 22/24 (91%)
Strand = Plus / Plus
Query: 92 gtcgggcgagcatctgagcgtcga 115
||||||||||||| | ||||||||
Sbjct: 512 gtcgggcgagcatttcagcgtcga 535
>ISMaq5
Length = 1677
Score = 32.2 bits (16), Expect = 0.33
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 67 aggcgctgcggcattt 82
||||||||||||||||
Sbjct: 1300 aggcgctgcggcattt 1315
>ISGbr1
Length = 1645
Score = 32.2 bits (16), Expect = 0.33
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 97 gcgagcatctgagcgt 112
||||||||||||||||
Sbjct: 244 gcgagcatctgagcgt 259
>ISFsp6
Length = 1472
Score = 32.2 bits (16), Expect = 0.33
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 125 gctcgggctggtcgag 140
||||||||||||||||
Sbjct: 566 gctcgggctggtcgag 581
>IS1070
Length = 1027
Score = 32.2 bits (16), Expect = 0.33
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 67 aggcgctgcggcatttttat 86
|||||||||||| |||||||
Sbjct: 51 aggcgctgcggcttttttat 32
>Tn5403
Length = 3663
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 14 cggcgagcatttcac 28
|||||||||||||||
Sbjct: 1340 cggcgagcatttcac 1326
>ISHli14
Length = 1650
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 98 cgagcatctgagcgt 112
|||||||||||||||
Sbjct: 132 cgagcatctgagcgt 118
>ISPsp6
Length = 1210
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 45 gccaaggcgcagctg 59
|||||||||||||||
Sbjct: 889 gccaaggcgcagctg 903
>ISMra6
Length = 851
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 60 gcgatggaggcgctg 74
|||||||||||||||
Sbjct: 365 gcgatggaggcgctg 351
>ISRm17
Length = 1664
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 216 ccgcgccaggtgcag 230
|||||||||||||||
Sbjct: 1393 ccgcgccaggtgcag 1379
>ISMlo5
Length = 1664
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 216 ccgcgccaggtgcag 230
|||||||||||||||
Sbjct: 1390 ccgcgccaggtgcag 1376
>ISMpo6
Length = 1593
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 37 gcacgccggccaagg 51
|||||||||||||||
Sbjct: 1226 gcacgccggccaagg 1240
>ISStma9
Length = 1234
Score = 30.2 bits (15), Expect = 1.3
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 31 tgctcggcacgccggccaa 49
|||||| ||||||||||||
Sbjct: 233 tgctcgacacgccggccaa 215
>ISCARN26
Length = 1214
Score = 30.2 bits (15), Expect = 1.3
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 38 cacgccggccaaggcgcag 56
||||||| |||||||||||
Sbjct: 927 cacgccgaccaaggcgcag 909
>ISXc8
Length = 1227
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 177 accctgctgacccgc 191
|||||||||||||||
Sbjct: 175 accctgctgacccgc 189
>ISXo14
Length = 1352
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 7 cccgtcgcggcgagc 21
|||||||||||||||
Sbjct: 1067 cccgtcgcggcgagc 1081
>ISXac1
Length = 1350
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 7 cccgtcgcggcgagc 21
|||||||||||||||
Sbjct: 1066 cccgtcgcggcgagc 1080
>ISSfr1
Length = 1359
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 181 tgctgacccgcaagg 195
|||||||||||||||
Sbjct: 1066 tgctgacccgcaagg 1080
>ISXc4
Length = 6938
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 7 cccgtcgcggcgagc 21
|||||||||||||||
Sbjct: 6041 cccgtcgcggcgagc 6055
>ISXaca1
Length = 1350
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 7 cccgtcgcggcgagc 21
|||||||||||||||
Sbjct: 1066 cccgtcgcggcgagc 1080
>ISVsa3
Length = 977
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 107 gagcgtcgatgacat 121
|||||||||||||||
Sbjct: 738 gagcgtcgatgacat 752
>IS481v2
Length = 1043
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 40 cgccggccaaggcgc 54
|||||||||||||||
Sbjct: 312 cgccggccaaggcgc 326
>IS481v1
Length = 1043
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 40 cgccggccaaggcgc 54
|||||||||||||||
Sbjct: 312 cgccggccaaggcgc 326
>IS481
Length = 1043
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 40 cgccggccaaggcgc 54
|||||||||||||||
Sbjct: 312 cgccggccaaggcgc 326
>ISPsy34
Length = 2041
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 131 gctggtcgagctgg 144
||||||||||||||
Sbjct: 173 gctggtcgagctgg 186
>ISXci1
Length = 2013
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 43 cggccaaggcgcag 56
||||||||||||||
Sbjct: 1533 cggccaaggcgcag 1546
>ISIde2
Length = 2529
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 85 atgcccagtcgggc 98
||||||||||||||
Sbjct: 393 atgcccagtcgggc 380
>ISSoEn1
Length = 1055
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 136 tcgagctggccaat 149
||||||||||||||
Sbjct: 753 tcgagctggccaat 740
>ISAzs17
Length = 7252
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 244 tccaggagttcgac 257
||||||||||||||
Sbjct: 1074 tccaggagttcgac 1061
>ISSgl1
Length = 1053
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 105 ctgagcgtcgatga 118
||||||||||||||
Sbjct: 844 ctgagcgtcgatga 831
>ISPfr6
Length = 1436
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 7 cccgtcgcggcgag 20
||||||||||||||
Sbjct: 643 cccgtcgcggcgag 656
>ISSpu19
Length = 1648
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 143 ggccaatgcggccg 156
||||||||||||||
Sbjct: 858 ggccaatgcggccg 871
>ISMsi4
Length = 1332
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 135 gtcgagctggccaa 148
||||||||||||||
Sbjct: 499 gtcgagctggccaa 512
>ISMsi2
Length = 1332
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 135 gtcgagctggccaa 148
||||||||||||||
Sbjct: 498 gtcgagctggccaa 511
>ISThsp15
Length = 1482
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 105 ctgagcgtcgatga 118
||||||||||||||
Sbjct: 605 ctgagcgtcgatga 618
>ISThsp7
Length = 1920
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 169 aggcgccgaccctg 182
||||||||||||||
Sbjct: 887 aggcgccgaccctg 900
>ISGdi12
Length = 1419
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 64 tggaggcgctgcgg 77
||||||||||||||
Sbjct: 108 tggaggcgctgcgg 121
>ISvNY2A_2
Length = 1443
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 242 gatccaggagttcg 255
||||||||||||||
Sbjct: 732 gatccaggagttcg 745
>ISBcen14
Length = 2516
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 65 ggaggcgctgcggc 78
||||||||||||||
Sbjct: 1948 ggaggcgctgcggc 1961
>ISBmu1
Length = 2581
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 206 cgggcgcacgccgc 219
||||||||||||||
Sbjct: 369 cgggcgcacgccgc 382
>ISUnCu1
Length = 1381
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 124 agctcgggctggtc 137
||||||||||||||
Sbjct: 577 agctcgggctggtc 564
>ISAzvi2
Length = 1396
Score = 28.2 bits (14), Expect = 5.2
Identities = 21/22 (95%), Gaps = 1/22 (4%)
Strand = Plus / Plus
Query: 58 tggcgatggaggcgctgcggca 79
||||||||||||| ||||||||
Sbjct: 231 tggcgatggaggc-ctgcggca 251
>ISPa11
Length = 1372
Score = 28.2 bits (14), Expect = 5.2
Identities = 21/22 (95%), Gaps = 1/22 (4%)
Strand = Plus / Plus
Query: 58 tggcgatggaggcgctgcggca 79
||||||||||||| ||||||||
Sbjct: 226 tggcgatggaggc-ctgcggca 246
>ISPsy14
Length = 2597
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 85 atgcccagtcgggc 98
||||||||||||||
Sbjct: 434 atgcccagtcgggc 421
>IS6100
Length = 880
Score = 28.2 bits (14), Expect = 5.2
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 222 caggtgcagtatctcaat 239
|||||| |||||||||||
Sbjct: 548 caggtgaagtatctcaat 565
>IS1646
Length = 1158
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 125 gctcgggctggtcg 138
||||||||||||||
Sbjct: 168 gctcgggctggtcg 181
>IS1479
Length = 1154
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 125 gctcgggctggtcg 138
||||||||||||||
Sbjct: 167 gctcgggctggtcg 180
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_195_length_263_cov_0.784946_ID_5560
(263 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISBj3 | IS3 | IS150 | Bradyrhizobium japonicum | 38 | 0.005 |
| ISMex2 | IS481 | Methylobacterium extorquens | 34 | 0.084 | |
| ISCef5 | IS6 | Corynebacterium efficiens | 32 | 0.33 | |
| ISVal2 | IS3 | IS3 | Vibrio alginolyticus | 30 | 1.3 |
| ISSsu5 | IS1380 | Streptococcus suis | 30 | 1.3 | |
| ISCARN53 | ISNCY | IS1202 | Metagenomic data from CARNOULES | 30 | 1.3 |
| ISNisp5 | IS1 | ISMhu11 | Nitrobacter sp. | 30 | 1.3 |
| ISVpa2 | IS3 | IS3 | Vibrio parahaemolyticus | 30 | 1.3 |
| ISPssy | IS5 | IS5 | Pseudomonas syringae | 30 | 1.3 |
| IS640 | IS21 | - | Shigella sonnei | 30 | 1.3 |
| IS21 | IS21 | - | Pseudomonas aeruginosa | 30 | 1.3 |
| IS1533 | IS110 | - | Leptospira borgpetersenii | 30 | 1.3 |
| ISMich2 | ISKra4 | ISMich2 | Microcoleus chthonoplastes | 28 | 5.2 |
| ISAra2 | ISKra4 | ISAzba1 | Agrobacterium radiobacter | 28 | 5.2 |
| ISAsp3 | IS4 | ISPepr1 | Anabaena sp. | 28 | 5.2 |
| ISAzs30 | IS21 | Azospirillum sp. | 28 | 5.2 | |
| ISPha2 | IS5 | Paracoccus halophilus | 28 | 5.2 | |
| ISMex42 | IS5 | IS427 | Methylobacterium extorquens | 28 | 5.2 |
| ISPsy28 | IS3 | IS3 | Pseudomonas syringae | 28 | 5.2 |
| ISMasp2 | IS4 | ISPepr1 | Magnetococcus sp. | 28 | 5.2 |
| ISBmu2 | IS5 | IS5 | Burkholderia multivorans | 28 | 5.2 |
>ISBj3
Length = 1284
Score = 38.2 bits (19), Expect = 0.005
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 89 tgcagcggcttgaccggct 107
|||||||||||||||||||
Sbjct: 511 tgcagcggcttgaccggct 529
>ISMex2
Length = 1031
Score = 34.2 bits (17), Expect = 0.084
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 214 ggcgagttgatccacat 230
|||||||||||||||||
Sbjct: 476 ggcgagttgatccacat 492
>ISCef5
Length = 845
Score = 32.2 bits (16), Expect = 0.33
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 142 ggggcgttcaaaaacc 157
||||||||||||||||
Sbjct: 617 ggggcgttcaaaaacc 632
>ISVal2
Length = 1243
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 199 atgcgctatcaatgg 213
|||||||||||||||
Sbjct: 870 atgcgctatcaatgg 884
>ISSsu5
Length = 1683
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 144 ggcgttcaaaaacct 158
|||||||||||||||
Sbjct: 1452 ggcgttcaaaaacct 1438
>ISCARN53
Length = 1404
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 213 gggcgagttgatcca 227
|||||||||||||||
Sbjct: 489 gggcgagttgatcca 503
>ISNisp5
Length = 3580
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 186 atgtggcggtgatat 200
|||||||||||||||
Sbjct: 1482 atgtggcggtgatat 1496
>ISVpa2
Length = 1243
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 199 atgcgctatcaatgg 213
|||||||||||||||
Sbjct: 870 atgcgctatcaatgg 884
>ISPssy
Length = 1188
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 180 cggcgaatgtggcgg 194
|||||||||||||||
Sbjct: 649 cggcgaatgtggcgg 663
>IS640
Length = 2130
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 248 tgtcagcgccagtga 262
|||||||||||||||
Sbjct: 1 tgtcagcgccagtga 15
>IS21
Length = 2131
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 248 tgtcagcgccagtga 262
|||||||||||||||
Sbjct: 1 tgtcagcgccagtga 15
>IS1533
Length = 1460
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 56 ttggcgagagtgttg 70
|||||||||||||||
Sbjct: 1257 ttggcgagagtgttg 1271
>ISMich2
Length = 1805
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 6 aaaaaagggcgatt 19
||||||||||||||
Sbjct: 301 aaaaaagggcgatt 288
>ISAra2
Length = 2535
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 171 gagccggaccggcg 184
||||||||||||||
Sbjct: 2372 gagccggaccggcg 2385
>ISAsp3
Length = 1452
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 151 aaaaacctggacgg 164
||||||||||||||
Sbjct: 577 aaaaacctggacgg 590
>ISAzs30
Length = 2365
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 214 ggcgagttgatcca 227
||||||||||||||
Sbjct: 973 ggcgagttgatcca 960
>ISPha2
Length = 1387
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 90 gcagcggcttgacc 103
||||||||||||||
Sbjct: 494 gcagcggcttgacc 481
>ISMex42
Length = 841
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 122 cgacagcatcacgc 135
||||||||||||||
Sbjct: 74 cgacagcatcacgc 61
>ISPsy28
Length = 1291
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 223 atccacataaggcc 236
||||||||||||||
Sbjct: 914 atccacataaggcc 927
>ISMasp2
Length = 1597
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 213 gggcgagttgatcc 226
||||||||||||||
Sbjct: 1375 gggcgagttgatcc 1362
>ISBmu2
Length = 1210
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 123 gacagcatcacgct 136
||||||||||||||
Sbjct: 333 gacagcatcacgct 346
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_196_length_263_cov_0.774194_ID_5562
(263 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISMno22 | IS110 | IS1111 | Methylobacterium nodulans | 36 | 0.021 |
| ISMno6 | IS6 | Methylobacterium nodulans | 32 | 0.33 | |
| ISCARN17 | IS21 | Metagenomic data from CARNOULES | 32 | 0.33 | |
| ISAfe12 | IS21 | Acidithiobacillus ferrooxidans | 32 | 0.33 | |
| ISRta4 | IS110 | Ralstonia taiwanensis | 32 | 0.33 | |
| ISMav1 | IS21 | - | Mycobacterium avium | 32 | 0.33 |
| IS1612 | IS21 | - | Mycobacterium avium | 32 | 0.33 |
| ISUnCu7 | ISKra4 | ISAzba1 | Uncultured bacterium | 30 | 1.3 |
| ISStsp2 | ISAzo13 | Streptomyces sp. | 30 | 1.3 | |
| ISMex2 | IS481 | Methylobacterium extorquens | 30 | 1.3 | |
| ISGdi4 | IS630 | Gluconacetobacter diazotrophicus | 30 | 1.3 | |
| ISMasp4 | IS66 | ISBst12 | Magnetococcus sp. | 30 | 1.3 |
| ISDge4 | IS66 | ISBst12 | Deinococcus geothermalis | 30 | 1.3 |
| ISAzvi6 | IS4 | IS4 | Azotobacter vinelandii | 30 | 1.3 |
| ISBcen14 | IS66 | Burkholderia cenocepacia | 30 | 1.3 | |
| IS1479 | IS5 | IS5 | Xanthomonas campestris | 30 | 1.3 |
| TnAs3 | Tn3 | Aeromonas salmonicida | 28 | 5.2 | |
| ISMno16 | IS110 | IS1111 | Methylobacterium nodulans | 28 | 5.2 |
| ISPa119 | IS110 | IS1111 | Pseudomonas aeruginosa | 28 | 5.2 |
| ISAs6 | IS3 | IS3 | Aeromonas salmonicida | 28 | 5.2 |
| ISPa54 | IS5 | IS5 | Pseudomonas aeruginosa | 28 | 5.2 |
| ISPa43 | Tn3 | Pseudomonas aeruginosa | 28 | 5.2 | |
| ISNph15 | IS200/IS605 | IS1341 | Natronomonas pharaonis | 28 | 5.2 |
| ISBvi6 | IS5 | IS903 | Burkholderia vietnamiensis | 28 | 5.2 |
| ISStma15 | IS3 | IS51 | Stenotrophomonas maltophilia | 28 | 5.2 |
| ISBdo1 | IS1182 | Burkholderia dolosa | 28 | 5.2 | |
| ISMlo5 | ISNCY | ISDol1 | Mesorhizobium loti | 28 | 5.2 |
| ISRsp17 | ISNCY | ISDol1 | Rhizobium sp. | 28 | 5.2 |
| ISSpma3 | IS3 | IS407 | Sphingopyxis macrogoltabida | 28 | 5.2 |
| ISPfr7 | ISL3 | Propionibacterium freudenreichii | 28 | 5.2 | |
| ISArsp6 | Tn3 | Arthrobacter sp. | 28 | 5.2 | |
| ISMesp2 | IS1380 | Mesorhizobium sp. | 28 | 5.2 | |
| ISBfun3 | IS1182 | Burkholderia fungorum | 28 | 5.2 | |
| ISMex39 | IS21 | Methylobacterium extorquens | 28 | 5.2 | |
| ISStma11 | ISL3 | Stenotrophomonas maltophilia | 28 | 5.2 | |
| ISCARN105 | IS3 | IS3 | Metagenomic data from CARNOULES | 28 | 5.2 |
| ISCARN104 | IS66 | Metagenomic data from CARNOULES | 28 | 5.2 | |
| ISAzo41 | IS5 | IS5 | Azoarcus sp. | 28 | 5.2 |
| ISAzo15 | IS66 | Azoarcus sp. | 28 | 5.2 | |
| ISAfe5 | IS3 | IS3 | Acidithiobacillus ferrooxidans | 28 | 5.2 |
| ISAzca2 | IS66 | Azorhizobium caulinodans | 28 | 5.2 | |
| ISAfe4 | IS66 | Acidithiobacillus ferrooxidans | 28 | 5.2 | |
| ISGdi12 | IS701 | Gluconacetobacter diazotrophicus | 28 | 5.2 | |
| ISAnsp1 | IS1182 | Anaeromyxobacter sp. | 28 | 5.2 | |
| ISBthe6 | IS66 | Bacteroides thetaiotaomicron | 28 | 5.2 | |
| ISRme9 | IS21 | Ralstonia metallidurans | 28 | 5.2 | |
| ISDge10 | IS200/IS605 | Deinococcus geothermalis | 28 | 5.2 | |
| ISKpn7 | IS21 | Klebsiella pneumoniae | 28 | 5.2 | |
| ISAzvi8 | IS701 | Azotobacter vinelandii | 28 | 5.2 | |
| ISMbu3 | IS1 | Methanococcoides burtonii | 28 | 5.2 | |
| ISAzo5 | IS4 | IS50 | Azoarcus sp. | 28 | 5.2 |
| ISBmu3 | IS21 | Burkholderia multivorans | 28 | 5.2 | |
| ISBlo8 | IS256 | Bifidobacterium longum | 28 | 5.2 |
>ISMno22
Length = 1426
Score = 36.2 bits (18), Expect = 0.021
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 59 ctggatgtcggtctcgcc 76
||||||||||||||||||
Sbjct: 891 ctggatgtcggtctcgcc 874
>ISMno6
Length = 816
Score = 32.2 bits (16), Expect = 0.33
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 92 gctggcgcgcagcgcagccg 111
|||||||||||||| |||||
Sbjct: 38 gctggcgcgcagcgtagccg 57
>ISCARN17
Length = 2539
Score = 32.2 bits (16), Expect = 0.33
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 234 tcccggatctcgatgc 249
||||||||||||||||
Sbjct: 1248 tcccggatctcgatgc 1233
>ISAfe12
Length = 2660
Score = 32.2 bits (16), Expect = 0.33
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 229 gggcatcccggatctc 244
||||||||||||||||
Sbjct: 254 gggcatcccggatctc 239
>ISRta4
Length = 1915
Score = 32.2 bits (16), Expect = 0.33
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 96 gcgcgcagcgcagccg 111
||||||||||||||||
Sbjct: 166 gcgcgcagcgcagccg 181
>ISMav1
Length = 2536
Score = 32.2 bits (16), Expect = 0.33
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 42 atcgcggcgcggccgcgctg 61
||||||||||||||| ||||
Sbjct: 233 atcgcggcgcggccgagctg 252
>IS1612
Length = 2532
Score = 32.2 bits (16), Expect = 0.33
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 42 atcgcggcgcggccgcgctg 61
||||||||||||||| ||||
Sbjct: 232 atcgcggcgcggccgagctg 251
>ISUnCu7
Length = 2273
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 211 gttcggcggcaaagg 225
|||||||||||||||
Sbjct: 1039 gttcggcggcaaagg 1025
>ISStsp2
Length = 1752
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 173 cgccaccgcttccac 187
|||||||||||||||
Sbjct: 1218 cgccaccgcttccac 1232
>ISMex2
Length = 1031
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 69 gtctcgcccgccacc 83
|||||||||||||||
Sbjct: 371 gtctcgcccgccacc 385
>ISGdi4
Length = 1176
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 8 cggcagattgtgcgg 22
|||||||||||||||
Sbjct: 265 cggcagattgtgcgg 279
>ISMasp4
Length = 1969
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 100 gcagcgcagccgcct 114
|||||||||||||||
Sbjct: 1439 gcagcgcagccgcct 1425
>ISDge4
Length = 1453
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 38 cagcatcgcggcgcg 52
|||||||||||||||
Sbjct: 1211 cagcatcgcggcgcg 1197
>ISAzvi6
Length = 1422
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 91 tgctggcgcgcagcg 105
|||||||||||||||
Sbjct: 341 tgctggcgcgcagcg 355
>ISBcen14
Length = 2516
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 43 tcgcggcgcggccgc 57
|||||||||||||||
Sbjct: 1179 tcgcggcgcggccgc 1165
>IS1479
Length = 1154
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 33 gcttccagcatcgcg 47
|||||||||||||||
Sbjct: 428 gcttccagcatcgcg 414
>TnAs3
Length = 18735
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 110 cgccttgcgcgcca 123
||||||||||||||
Sbjct: 4439 cgccttgcgcgcca 4452
>ISMno16
Length = 1404
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 110 cgccttgcgcgcca 123
||||||||||||||
Sbjct: 1001 cgccttgcgcgcca 988
>ISPa119
Length = 1378
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 33 gcttccagcatcgc 46
||||||||||||||
Sbjct: 366 gcttccagcatcgc 353
>ISAs6
Length = 1239
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 57 cgctggatgtcggt 70
||||||||||||||
Sbjct: 166 cgctggatgtcggt 179
>ISPa54
Length = 1159
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 112 ccttgcgcgccagg 125
||||||||||||||
Sbjct: 458 ccttgcgcgccagg 445
>ISPa43
Length = 19903
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 56 gcgctggatgtcgg 69
||||||||||||||
Sbjct: 18175 gcgctggatgtcgg 18188
>ISNph15
Length = 1476
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 32 ggcttccagcatcg 45
||||||||||||||
Sbjct: 1088 ggcttccagcatcg 1075
>ISBvi6
Length = 1047
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 1 cggccagcggcaga 14
||||||||||||||
Sbjct: 170 cggccagcggcaga 183
>ISStma15
Length = 1250
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 107 agccgccttgcgcg 120
||||||||||||||
Sbjct: 1219 agccgccttgcgcg 1206
>ISBdo1
Length = 1572
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 101 cagcgcagccgcct 114
||||||||||||||
Sbjct: 1508 cagcgcagccgcct 1521
>ISMlo5
Length = 1664
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 96 gcgcgcagcgcagc 109
||||||||||||||
Sbjct: 339 gcgcgcagcgcagc 326
>ISRsp17
Length = 1664
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 96 gcgcgcagcgcagc 109
||||||||||||||
Sbjct: 341 gcgcgcagcgcagc 328
>ISSpma3
Length = 1269
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 207 tgcagttcggcggc 220
||||||||||||||
Sbjct: 1143 tgcagttcggcggc 1130
>ISPfr7
Length = 1423
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 49 cgcggccgcgctgg 62
||||||||||||||
Sbjct: 493 cgcggccgcgctgg 506
>ISArsp6
Length = 26712
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 171 agcgccaccgcttc 184
||||||||||||||
Sbjct: 17995 agcgccaccgcttc 17982
>ISMesp2
Length = 1618
Score = 28.2 bits (14), Expect = 5.2
Identities = 20/22 (90%)
Strand = Plus / Minus
Query: 50 gcggccgcgctggatgtcggtc 71
|||| ||||| |||||||||||
Sbjct: 344 gcgggcgcgcaggatgtcggtc 323
>ISBfun3
Length = 1627
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 52 ggccgcgctggatg 65
||||||||||||||
Sbjct: 580 ggccgcgctggatg 593
>ISMex39
Length = 2456
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 236 ccggatctcgatgc 249
||||||||||||||
Sbjct: 1155 ccggatctcgatgc 1142
>ISStma11
Length = 4621
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 91 tgctggcgcgcagc 104
||||||||||||||
Sbjct: 2360 tgctggcgcgcagc 2347
>ISCARN105
Length = 1661
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 101 cagcgcagccgcct 114
||||||||||||||
Sbjct: 521 cagcgcagccgcct 508
>ISCARN104
Length = 2483
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 29 gaaggcttccagca 42
||||||||||||||
Sbjct: 2071 gaaggcttccagca 2058
>ISAzo41
Length = 1158
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 108 gccgccttgcgcgc 121
||||||||||||||
Sbjct: 249 gccgccttgcgcgc 236
>ISAzo15
Length = 2441
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 203 cgcctgcagttcgg 216
||||||||||||||
Sbjct: 334 cgcctgcagttcgg 347
>ISAfe5
Length = 1658
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 101 cagcgcagccgcct 114
||||||||||||||
Sbjct: 518 cagcgcagccgcct 505
>ISAzca2
Length = 2458
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 171 agcgccaccgcttc 184
||||||||||||||
Sbjct: 1022 agcgccaccgcttc 1035
>ISAfe4
Length = 2477
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 29 gaaggcttccagca 42
||||||||||||||
Sbjct: 2065 gaaggcttccagca 2052
>ISGdi12
Length = 1419
Score = 28.2 bits (14), Expect = 5.2
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 72 tcgcccgccacccaccgg 89
||||| ||||||||||||
Sbjct: 678 tcgccagccacccaccgg 661
>ISAnsp1
Length = 1520
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 53 gccgcgctggatgt 66
||||||||||||||
Sbjct: 1196 gccgcgctggatgt 1183
>ISBthe6
Length = 2544
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 158 gagggaaggcggaa 171
||||||||||||||
Sbjct: 662 gagggaaggcggaa 649
>ISRme9
Length = 2688
Score = 28.2 bits (14), Expect = 5.2
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 109 ccgccttgcgcgccaggg 126
||||||||||| ||||||
Sbjct: 1368 ccgccttgcgcaccaggg 1351
>ISDge10
Length = 1757
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 247 tgctggcggagaag 260
||||||||||||||
Sbjct: 267 tgctggcggagaag 280
>ISKpn7
Length = 1956
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 36 tccagcatcgcggc 49
||||||||||||||
Sbjct: 1782 tccagcatcgcggc 1769
>ISAzvi8
Length = 1482
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 113 cttgcgcgccaggg 126
||||||||||||||
Sbjct: 187 cttgcgcgccaggg 174
>ISMbu3
Length = 741
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 190 gttcatgcacaaac 203
||||||||||||||
Sbjct: 57 gttcatgcacaaac 44
>ISAzo5
Length = 1478
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 112 ccttgcgcgccagg 125
||||||||||||||
Sbjct: 1362 ccttgcgcgccagg 1349
>ISBmu3
Length = 2697
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 46 cggcgcggccgcgc 59
||||||||||||||
Sbjct: 1026 cggcgcggccgcgc 1039
>ISBlo8
Length = 1408
Score = 28.2 bits (14), Expect = 5.2
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 36 tccagcatcgcggcgcgg 53
|||||||||||| |||||
Sbjct: 1041 tccagcatcgcgtcgcgg 1024
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_197_length_263_cov_1.17742_ID_5564
(263 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| IS1512 | IS256 | - | Mycobacterium gordonae | 32 | 0.33 |
| IS1407 | IS256 | - | Mycobacterium celatum | 32 | 0.33 |
| IS1395 | IS256 | - | Mycobacterium xenopi | 32 | 0.33 |
| ISMyma6 | IS481 | - | Mycobacterium marinum | 30 | 1.3 |
| ISXcd1 | IS3 | IS407 | Xanthomonas axonopodis | 30 | 1.3 |
| TnXo19 | Tn3 | Xanthomonas oryzae | 28 | 5.2 | |
| ISNaoc7 | IS200/IS605 | IS1341 | Natronococcus occultus | 28 | 5.2 |
| ISKpn25 | ISL3 | Klebsiella pneumoniae | 28 | 5.2 | |
| ISBlo17 | IS256 | IS1249 | Bifidobacterium longum | 28 | 5.2 |
| ISTni2 | IS481 | Thioalkalivibrio nitratireducens | 28 | 5.2 | |
| ISPfe1 | IS3 | IS407 | Paracoccus ferrooxidans | 28 | 5.2 |
| ISCysp14 | IS200/IS605 | Cyanothece sp. | 28 | 5.2 | |
| ISCth7 | IS110 | Clostridium thermocellum | 28 | 5.2 | |
| ISApr7 | IS1595 | ISNwi1 | Alpha proteobacterium | 28 | 5.2 |
| ISSpwi1 | IS3 | IS407 | Sphingomonas wittichii | 28 | 5.2 |
| ISRssp1 | IS3 | IS407 | Roseovarius sp. | 28 | 5.2 |
| ISPosp1 | IS4 | IS4 | Polaromonas sp. | 28 | 5.2 |
| ISSpo8 | IS1595 | ISNwi1 | Silicibacter pomeroyi | 28 | 5.2 |
| ISMyma2 | IS1380 | Mycobacterium marinum | 28 | 5.2 | |
| ISCfe1 | IS607 | Campylobacter fetus | 28 | 5.2 | |
| ISRso16 | IS3 | IS407 | Ralstonia solanacearum | 28 | 5.2 |
| IS868 | IS3 | IS51 | Agrobacterium tumefaciens | 28 | 5.2 |
| IS5Sb | IS5 | IS1031 | Synechocystis sp. | 28 | 5.2 |
| IS5Sa | IS5 | IS1031 | Synechocystis sp. | 28 | 5.2 |
| IS1408 | IS256 | - | Mycobacterium branderi | 28 | 5.2 |
>IS1512
Length = 1314
Score = 32.2 bits (16), Expect = 0.33
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 138 aatgggtgcggcagcg 153
||||||||||||||||
Sbjct: 825 aatgggtgcggcagcg 810
>IS1407
Length = 1422
Score = 32.2 bits (16), Expect = 0.33
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 138 aatgggtgcggcagcg 153
||||||||||||||||
Sbjct: 862 aatgggtgcggcagcg 847
>IS1395
Length = 1323
Score = 32.2 bits (16), Expect = 0.33
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 138 aatgggtgcggcagcg 153
||||||||||||||||
Sbjct: 823 aatgggtgcggcagcg 808
>ISMyma6
Length = 1072
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 161 cggcggaaaaacacc 175
|||||||||||||||
Sbjct: 1017 cggcggaaaaacacc 1031
>ISXcd1
Length = 1195
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 232 ttgtagaacgtcgcc 246
|||||||||||||||
Sbjct: 188 ttgtagaacgtcgcc 174
>TnXo19
Length = 18767
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 78 acgcaaggtgctca 91
||||||||||||||
Sbjct: 14986 acgcaaggtgctca 14999
>ISNaoc7
Length = 1388
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 185 caagcacccagcga 198
||||||||||||||
Sbjct: 411 caagcacccagcga 424
>ISKpn25
Length = 8154
Score = 28.2 bits (14), Expect = 5.2
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 26 taatcagcgcctgccgct 43
||||||||||||| ||||
Sbjct: 2806 taatcagcgcctggcgct 2789
>ISBlo17
Length = 1352
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 198 acacacgggtcgaa 211
||||||||||||||
Sbjct: 1290 acacacgggtcgaa 1303
>ISTni2
Length = 3451
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 222 catggcgccattgt 235
||||||||||||||
Sbjct: 2147 catggcgccattgt 2160
>ISPfe1
Length = 1248
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 232 ttgtagaacgtcgc 245
||||||||||||||
Sbjct: 187 ttgtagaacgtcgc 174
>ISCysp14
Length = 1822
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 174 ccaacaaagcccaa 187
||||||||||||||
Sbjct: 595 ccaacaaagcccaa 608
>ISCth7
Length = 1595
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 127 gcatctagtgcaat 140
||||||||||||||
Sbjct: 996 gcatctagtgcaat 983
>ISApr7
Length = 3923
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 145 gcggcagcgtagct 158
||||||||||||||
Sbjct: 3481 gcggcagcgtagct 3468
>ISSpwi1
Length = 1269
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 115 acggcctccggcgc 128
||||||||||||||
Sbjct: 1156 acggcctccggcgc 1143
>ISRssp1
Length = 1253
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 232 ttgtagaacgtcgc 245
||||||||||||||
Sbjct: 186 ttgtagaacgtcgc 173
>ISPosp1
Length = 1529
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 30 cagcgcctgccgct 43
||||||||||||||
Sbjct: 453 cagcgcctgccgct 466
>ISSpo8
Length = 1863
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 89 tcagatgcgcggtc 102
||||||||||||||
Sbjct: 1100 tcagatgcgcggtc 1113
>ISMyma2
Length = 1679
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 188 gcacccagcgacac 201
||||||||||||||
Sbjct: 1570 gcacccagcgacac 1583
>ISCfe1
Length = 2030
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 2 cttcaacttcttta 15
||||||||||||||
Sbjct: 550 cttcaacttcttta 537
>ISRso16
Length = 1238
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 232 ttgtagaacgtcgc 245
||||||||||||||
Sbjct: 199 ttgtagaacgtcgc 186
>IS868
Length = 1321
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 236 agaacgtcgcccaa 249
||||||||||||||
Sbjct: 465 agaacgtcgcccaa 478
>IS5Sb
Length = 871
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 158 tgacggcggaaaaa 171
||||||||||||||
Sbjct: 433 tgacggcggaaaaa 446
>IS5Sa
Length = 871
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 158 tgacggcggaaaaa 171
||||||||||||||
Sbjct: 433 tgacggcggaaaaa 446
>IS1408
Length = 1325
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 140 tgggtgcggcagcg 153
||||||||||||||
Sbjct: 823 tgggtgcggcagcg 810
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_198_length_263_cov_0.784946_ID_5566
(263 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISMlo1 | IS110 | IS1111 | Mesorhizobium loti | 34 | 0.084 |
| ISHwa7 | IS630 | Haloquadratum walsbyi | 32 | 0.33 | |
| ISPfr16 | IS30 | Propionibacterium freudenreichii | 32 | 0.33 | |
| ISAs33 | IS3 | IS3 | Aeromonas salmonicida | 30 | 1.3 |
| ISTni1 | ISKra4 | ISKra4 | Thioalkalivibrio nitratireducens | 30 | 1.3 |
| ISBsa1 | IS256 | Blastococcus saxobsidens | 30 | 1.3 | |
| ISButh7 | IS5 | IS903 | Burkholderia thailandensis | 30 | 1.3 |
| ISAnsp12 | IS66 | Anaeromyxobacter sp. | 30 | 1.3 | |
| ISCARN56 | IS607 | Metagenomic data from CARNOULES | 30 | 1.3 | |
| ISSpu7 | IS1634 | Shewanella putrefaciens | 30 | 1.3 | |
| ISAzvi10 | IS701 | Azotobacter vinelandii | 30 | 1.3 | |
| ISCef4 | IS4 | IS4 | Corynebacterium efficiens | 30 | 1.3 |
| ISRm16 | IS4 | IS4Sa | Sinorhizobium meliloti | 30 | 1.3 |
| ISFsp4 | IS200/IS605 | Frankia sp. | 30 | 1.3 | |
| ISHasp1 | IS200/IS605 | IS1341 | Halobacterium sp. | 28 | 5.2 |
| ISLfe2 | ISKra4 | ISKra4 | Leptospirillum ferrodiazotrophum | 28 | 5.2 |
| ISBast1 | IS256 | IS1249 | Bifidobacterium asteroides | 28 | 5.2 |
| ISPa40 | Tn3 | Pseudomonas aeruginosa | 28 | 5.2 | |
| ISNph21 | IS200/IS605 | IS1341 | Natronomonas pharaonis | 28 | 5.2 |
| ISPna1 | IS630 | Polaromonas naphthalenivorans | 28 | 5.2 | |
| ISMno33 | IS1182 | Methylobacterium nodulans | 28 | 5.2 | |
| ISMno23 | IS91 | Methylobacterium nodulans | 28 | 5.2 | |
| ISArsp6 | Tn3 | Arthrobacter sp. | 28 | 5.2 | |
| ISMex38 | Tn3 | Methylobacterium extorquens | 28 | 5.2 | |
| ISStma11 | ISL3 | Stenotrophomonas maltophilia | 28 | 5.2 | |
| ISThsp9 | Tn3 | Thiomonas sp. | 28 | 5.2 | |
| ISThsp8 | IS1634 | Thiomonas sp. | 28 | 5.2 | |
| ISAnsp3 | IS66 | Anaeromyxobacter sp. | 28 | 5.2 | |
| ISDge5 | IS701 | Deinococcus geothermalis | 28 | 5.2 | |
| IS1557 | ISL3 | Mycobacterium tuberculosis | 28 | 5.2 | |
| ISMsm3 | IS1380 | Mycobacterium smegmatis | 28 | 5.2 | |
| ISPa16 | IS5 | IS5 | Pseudomonas aeruginosa | 28 | 5.2 |
| ISMul1 | ISAs1 | Mycobacterium ulcerans | 28 | 5.2 | |
| ISRle6 | IS6 | Rhizobium leguminosarum | 28 | 5.2 | |
| ISRme4 | IS21 | Cupriavidus metallidurans | 28 | 5.2 | |
| ISMrsp2 | IS1595 | IS1595 | Marinobacter sp. | 28 | 5.2 |
| ISHma1 | IS4 | ISH8 | Haloarcula marismortui | 28 | 5.2 |
| ISPpu18 | IS5 | IS5 | Pseudomonas putida | 28 | 5.2 |
| ISPst5 | IS5 | IS5 | Pseudomonas stutzeri | 28 | 5.2 |
| ISAzo6 | IS1634 | Azoarcus sp. | 28 | 5.2 | |
| ISAzo25 | IS1182 | Azoarcus sp. | 28 | 5.2 | |
| IS640 | IS21 | - | Shigella sonnei | 28 | 5.2 |
| ISBian1 | IS5 | IS5 | Bifidobacterium animalis | 28 | 5.2 |
| IS2404 | ISAs1 | - | Mycobacterium ulcerans | 28 | 5.2 |
| IS21 | IS21 | - | Pseudomonas aeruginosa | 28 | 5.2 |
>ISMlo1
Length = 1405
Score = 34.2 bits (17), Expect = 0.084
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 28 gcagcacgacctcttcg 44
|||||||||||||||||
Sbjct: 169 gcagcacgacctcttcg 153
>ISHwa7
Length = 1142
Score = 32.2 bits (16), Expect = 0.33
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 122 gacgcctggaacgaag 137
||||||||||||||||
Sbjct: 236 gacgcctggaacgaag 251
>ISPfr16
Length = 1234
Score = 32.2 bits (16), Expect = 0.33
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 63 gcatccccggcatgagcatg 82
||||||||||||||| ||||
Sbjct: 701 gcatccccggcatgatcatg 720
>ISAs33
Length = 1239
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 103 caaactcgaagccgc 117
|||||||||||||||
Sbjct: 104 caaactcgaagccgc 118
>ISTni1
Length = 2377
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 213 tctgccgccgcgccg 227
|||||||||||||||
Sbjct: 341 tctgccgccgcgccg 327
>ISBsa1
Length = 1464
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 113 gccgcgctcgacgcc 127
|||||||||||||||
Sbjct: 1346 gccgcgctcgacgcc 1360
>ISButh7
Length = 1128
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 113 gccgcgctcgacgcc 127
|||||||||||||||
Sbjct: 846 gccgcgctcgacgcc 860
>ISAnsp12
Length = 2926
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 113 gccgcgctcgacgcc 127
|||||||||||||||
Sbjct: 1965 gccgcgctcgacgcc 1979
>ISCARN56
Length = 1894
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 76 gagcatgatctccac 90
|||||||||||||||
Sbjct: 305 gagcatgatctccac 319
>ISSpu7
Length = 1761
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 110 gaagccgcgctcgac 124
|||||||||||||||
Sbjct: 1406 gaagccgcgctcgac 1392
>ISAzvi10
Length = 1431
Score = 30.2 bits (15), Expect = 1.3
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 237 tggtcggtctggcgcagga 255
|||||| ||||||||||||
Sbjct: 1355 tggtcgctctggcgcagga 1373
>ISCef4
Length = 1451
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 183 ccgccagccaggccc 197
|||||||||||||||
Sbjct: 438 ccgccagccaggccc 424
>ISRm16
Length = 1299
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 63 gcatccccggcatga 77
|||||||||||||||
Sbjct: 207 gcatccccggcatga 193
>ISFsp4
Length = 1784
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 233 atgctggtcggtctg 247
|||||||||||||||
Sbjct: 1379 atgctggtcggtctg 1393
>ISHasp1
Length = 1601
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 160 catcctccccggcg 173
||||||||||||||
Sbjct: 1597 catcctccccggcg 1584
>ISLfe2
Length = 1803
Score = 28.2 bits (14), Expect = 5.2
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 160 catcctccccggcggatc 177
||||||||||||| ||||
Sbjct: 218 catcctccccggccgatc 235
>ISBast1
Length = 1357
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 37 cctcttcgatctgg 50
||||||||||||||
Sbjct: 154 cctcttcgatctgg 141
>ISPa40
Length = 6592
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 180 gcgccgccagccag 193
||||||||||||||
Sbjct: 154 gcgccgccagccag 167
>ISNph21
Length = 1518
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 116 gcgctcgacgcctg 129
||||||||||||||
Sbjct: 959 gcgctcgacgcctg 946
>ISPna1
Length = 1179
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 101 gacaaactcgaagc 114
||||||||||||||
Sbjct: 946 gacaaactcgaagc 933
>ISMno33
Length = 1767
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 237 tggtcggtctggcg 250
||||||||||||||
Sbjct: 23 tggtcggtctggcg 36
>ISMno23
Length = 2271
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 250 gcaggaagaagccg 263
||||||||||||||
Sbjct: 1559 gcaggaagaagccg 1546
>ISArsp6
Length = 26712
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 220 ccgcgccgaacgca 233
||||||||||||||
Sbjct: 10468 ccgcgccgaacgca 10455
>ISMex38
Length = 3841
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 182 gccgccagccaggc 195
||||||||||||||
Sbjct: 2357 gccgccagccaggc 2344
>ISStma11
Length = 4621
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 16 gctcaccgacgtgc 29
||||||||||||||
Sbjct: 4263 gctcaccgacgtgc 4276
>ISThsp9
Length = 6215
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 185 gccagccaggccca 198
||||||||||||||
Sbjct: 373 gccagccaggccca 360
>ISThsp8
Length = 1929
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 110 gaagccgcgctcga 123
||||||||||||||
Sbjct: 1553 gaagccgcgctcga 1540
>ISAnsp3
Length = 2518
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 113 gccgcgctcgacgc 126
||||||||||||||
Sbjct: 1952 gccgcgctcgacgc 1965
>ISDge5
Length = 1150
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 140 ctctccccgctcaa 153
||||||||||||||
Sbjct: 790 ctctccccgctcaa 777
>IS1557
Length = 1509
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 183 ccgccagccaggcc 196
||||||||||||||
Sbjct: 507 ccgccagccaggcc 494
>ISMsm3
Length = 1695
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 22 cgacgtgcagcacg 35
||||||||||||||
Sbjct: 1414 cgacgtgcagcacg 1401
>ISPa16
Length = 1192
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 95 caggtcgacaaact 108
||||||||||||||
Sbjct: 672 caggtcgacaaact 685
>ISMul1
Length = 1366
Score = 28.2 bits (14), Expect = 5.2
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 4 cgtacgcgccctgctcac 21
|||||| |||||||||||
Sbjct: 686 cgtacgtgccctgctcac 703
>ISRle6
Length = 891
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 108 tcgaagccgcgctc 121
||||||||||||||
Sbjct: 247 tcgaagccgcgctc 234
>ISRme4
Length = 2469
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 173 ggatcccgcgccgc 186
||||||||||||||
Sbjct: 679 ggatcccgcgccgc 692
>ISMrsp2
Length = 1027
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 45 atctgggcggcgaa 58
||||||||||||||
Sbjct: 514 atctgggcggcgaa 527
>ISHma1
Length = 1403
Score = 28.2 bits (14), Expect = 5.2
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 108 tcgaagccgcgctcgacg 125
|||| |||||||||||||
Sbjct: 372 tcgaggccgcgctcgacg 389
>ISPpu18
Length = 1192
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 95 caggtcgacaaact 108
||||||||||||||
Sbjct: 672 caggtcgacaaact 685
>ISPst5
Length = 1191
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 95 caggtcgacaaact 108
||||||||||||||
Sbjct: 672 caggtcgacaaact 685
>ISAzo6
Length = 1925
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 110 gaagccgcgctcga 123
||||||||||||||
Sbjct: 1546 gaagccgcgctcga 1533
>ISAzo25
Length = 1388
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 184 cgccagccaggccc 197
||||||||||||||
Sbjct: 364 cgccagccaggccc 351
>IS640
Length = 2130
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 5 gtacgcgccctgct 18
||||||||||||||
Sbjct: 158 gtacgcgccctgct 145
>ISBian1
Length = 1134
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 76 gagcatgatctcca 89
||||||||||||||
Sbjct: 240 gagcatgatctcca 227
>IS2404
Length = 1279
Score = 28.2 bits (14), Expect = 5.2
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 4 cgtacgcgccctgctcac 21
|||||| |||||||||||
Sbjct: 549 cgtacgtgccctgctcac 566
>IS21
Length = 2131
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 5 gtacgcgccctgct 18
||||||||||||||
Sbjct: 158 gtacgcgccctgct 145
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_199_length_263_cov_1.17204_ID_5568
(263 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISEc32 | IS110 | Escherichia coli | 32 | 0.33 | |
| ISBbi1 | IS1595 | Bifidobacterium bifidum | 32 | 0.33 | |
| ISMyma1 | IS3 | IS407 | Mycobacterium marinum | 32 | 0.33 |
| ISTvi1 | ISKra4 | ISKra4 | Thiocystis violascens | 30 | 1.3 |
| ISMtsp8 | IS21 | Methylobacterium sp. | 30 | 1.3 | |
| ISMva2 | IS481 | Mycobacterium vanbaalenii | 30 | 1.3 | |
| IS658 | IS30 | - | Bacillus halodurans | 30 | 1.3 |
| ISAve3 | IS3 | IS2 | Aeromonas veronii | 28 | 5.2 |
| ISAs17 | IS3 | IS2 | Aeromonas salmonicida | 28 | 5.2 |
| ISRjo3 | ISNCY | ISDol1 | Rhodococcus jostii | 28 | 5.2 |
| ISMno26 | IS110 | IS1111 | Methylobacterium nodulans | 28 | 5.2 |
| ISHwa2 | IS4 | IS50 | Haloquadratum walsbyi | 28 | 5.2 |
| ISCgl4 | IS1380 | Corynebacterium glutamicum | 28 | 5.2 | |
| IS1677 | IS1380 | Corynebacterium glutamicum | 28 | 5.2 | |
| ISSfu1 | IS1380 | Syntrophobacter fumaroxidans | 28 | 5.2 | |
| ISAcr3 | ISAs1 | Acidiphilium cryptum | 28 | 5.2 | |
| ISCARN41 | IS630 | Metagenomic data from CARNOULES | 28 | 5.2 | |
| ISAfe2 | IS256 | Acidithiobacillus ferrooxidans | 28 | 5.2 | |
| ISMno3 | IS66 | ISBst12 | Methylobacterium nodulans | 28 | 5.2 |
| ISUnCu3 | IS21 | Uncultured bacterium | 28 | 5.2 | |
| ISPsy27 | IS1182 | Pseudomonas syringae | 28 | 5.2 | |
| ISGpr2 | IS3 | IS51 | Gamma proteobacterium | 28 | 5.2 |
| ISPph1 | IS1634 | Pelodictyon phaeoclathratiforme | 28 | 5.2 | |
| ISBmu1 | IS21 | Burkholderia multivorans | 28 | 5.2 | |
| IS881 | IS5 | IS5 | Ralstonia eutropha | 28 | 5.2 |
| ISMlo2 | IS110 | IS1111 | Mesorhizobium loti | 28 | 5.2 |
| ISPpu7 | IS21 | - | Pseudomonas putida | 28 | 5.2 |
| ISMav1 | IS21 | - | Mycobacterium avium | 28 | 5.2 |
| ISBli2 | IS256 | - | Brevibacterium linens | 28 | 5.2 |
| IS666 | IS256 | - | Mycobacterium avium | 28 | 5.2 |
| IS51 | IS3 | IS51 | Pseudomonas syringae | 28 | 5.2 |
| IS1612 | IS21 | - | Mycobacterium avium | 28 | 5.2 |
| IS1491 | IS21 | - | Pseudomonas alcaligenes | 28 | 5.2 |
| IS1372 | IS3 | IS51 | Streptomyces lividans | 28 | 5.2 |
>ISEc32
Length = 1180
Score = 32.2 bits (16), Expect = 0.33
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 57 atcgccaccaccgccacgat 76
||||||||||||| ||||||
Sbjct: 229 atcgccaccaccgacacgat 248
>ISBbi1
Length = 981
Score = 32.2 bits (16), Expect = 0.33
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 23 ggtgctttcggccatc 38
||||||||||||||||
Sbjct: 564 ggtgctttcggccatc 549
>ISMyma1
Length = 1240
Score = 32.2 bits (16), Expect = 0.33
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 203 caactcggcatcggcc 218
||||||||||||||||
Sbjct: 320 caactcggcatcggcc 305
>ISTvi1
Length = 1417
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 61 ccaccaccgccacga 75
|||||||||||||||
Sbjct: 164 ccaccaccgccacga 150
>ISMtsp8
Length = 2371
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 70 ccacgatcagcagcg 84
|||||||||||||||
Sbjct: 1953 ccacgatcagcagcg 1939
>ISMva2
Length = 1966
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 57 atcgccaccaccgcc 71
|||||||||||||||
Sbjct: 332 atcgccaccaccgcc 318
>IS658
Length = 1058
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 52 actcaatcgccacca 66
|||||||||||||||
Sbjct: 195 actcaatcgccacca 209
>ISAve3
Length = 1333
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 174 tagctgcgcacgcg 187
||||||||||||||
Sbjct: 501 tagctgcgcacgcg 488
>ISAs17
Length = 1333
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 174 tagctgcgcacgcg 187
||||||||||||||
Sbjct: 501 tagctgcgcacgcg 488
>ISRjo3
Length = 1638
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 81 agcggatccaggcc 94
||||||||||||||
Sbjct: 615 agcggatccaggcc 628
>ISMno26
Length = 1353
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 206 ctcggcatcggccg 219
||||||||||||||
Sbjct: 363 ctcggcatcggccg 350
>ISHwa2
Length = 1668
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 204 aactcggcatcggc 217
||||||||||||||
Sbjct: 205 aactcggcatcggc 218
>ISCgl4
Length = 1653
Score = 28.2 bits (14), Expect = 5.2
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 60 gccaccaccgccacgatc 77
||||||||||| ||||||
Sbjct: 1339 gccaccaccgcaacgatc 1356
>IS1677
Length = 1688
Score = 28.2 bits (14), Expect = 5.2
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 60 gccaccaccgccacgatc 77
||||||||||| ||||||
Sbjct: 1375 gccaccaccgcgacgatc 1392
>ISSfu1
Length = 1666
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 74 gatcagcagcggat 87
||||||||||||||
Sbjct: 649 gatcagcagcggat 636
>ISAcr3
Length = 1232
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 54 tcaatcgccaccac 67
||||||||||||||
Sbjct: 415 tcaatcgccaccac 402
>ISCARN41
Length = 1113
Score = 28.2 bits (14), Expect = 5.2
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 173 gtagctgcgcacgcgctc 190
||||||||||| ||||||
Sbjct: 1059 gtagctgcgcatgcgctc 1042
>ISAfe2
Length = 1124
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 88 ccaggcccagctct 101
||||||||||||||
Sbjct: 107 ccaggcccagctct 94
>ISMno3
Length = 1364
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 130 ggcgcagcaaggcc 143
||||||||||||||
Sbjct: 835 ggcgcagcaaggcc 848
>ISUnCu3
Length = 2596
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 203 caactcggcatcgg 216
||||||||||||||
Sbjct: 368 caactcggcatcgg 355
>ISPsy27
Length = 1596
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 208 cggcatcggccgtc 221
||||||||||||||
Sbjct: 966 cggcatcggccgtc 953
>ISGpr2
Length = 1229
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 137 caaggccgtttgcg 150
||||||||||||||
Sbjct: 972 caaggccgtttgcg 959
>ISPph1
Length = 1849
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 240 tgcaacagggctgc 253
||||||||||||||
Sbjct: 339 tgcaacagggctgc 326
>ISBmu1
Length = 2581
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 72 acgatcagcagcgg 85
||||||||||||||
Sbjct: 2207 acgatcagcagcgg 2194
>IS881
Length = 3033
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 50 cgactcaatcgcca 63
||||||||||||||
Sbjct: 2095 cgactcaatcgcca 2108
>ISMlo2
Length = 1402
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 207 tcggcatcggccgt 220
||||||||||||||
Sbjct: 363 tcggcatcggccgt 350
>ISPpu7
Length = 2598
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 203 caactcggcatcgg 216
||||||||||||||
Sbjct: 369 caactcggcatcgg 356
>ISMav1
Length = 2536
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 61 ccaccaccgccacg 74
||||||||||||||
Sbjct: 1192 ccaccaccgccacg 1179
>ISBli2
Length = 1467
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 64 ccaccgccacgatc 77
||||||||||||||
Sbjct: 246 ccaccgccacgatc 259
>IS666
Length = 1472
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 27 ctttcggccatcgg 40
||||||||||||||
Sbjct: 761 ctttcggccatcgg 748
>IS51
Length = 1311
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 176 gctgcgcacgcgct 189
||||||||||||||
Sbjct: 509 gctgcgcacgcgct 496
>IS1612
Length = 2532
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 61 ccaccaccgccacg 74
||||||||||||||
Sbjct: 1191 ccaccaccgccacg 1178
>IS1491
Length = 2481
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 203 caactcggcatcgg 216
||||||||||||||
Sbjct: 299 caactcggcatcgg 286
>IS1372
Length = 1304
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 87 tccaggcccagctc 100
||||||||||||||
Sbjct: 649 tccaggcccagctc 636
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_200_length_262_cov_0.783784_ID_5570
(262 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISPa32 | IS3 | IS407 | Pseudomonas aeruginosa | 32 | 0.33 |
| ISMav9 | ISNCY | ISDol1 | Mycobacterium avium | 30 | 1.3 |
| ISTsu1 | IS256 | Thermaerobacter subterraneus | 30 | 1.3 | |
| ISAfe13 | ISKra4 | ISAzba1 | Acidithiobacillus ferrivorans | 30 | 1.3 |
| ISMex34 | IS200/IS605 | IS200 | Methylobacterium extorquens | 30 | 1.3 |
| ISBcen2 | IS110 | IS1111 | Burkholderia cenocepacia | 30 | 1.3 |
| TnXo19 | Tn3 | Xanthomonas oryzae | 28 | 5.2 | |
| ISHel1 | IS200/IS605 | IS1341 | Haloferax elongans | 28 | 5.2 |
| ISWpi12 | IS110 | Wolbachia pipientis | 28 | 5.2 | |
| ISAzs3 | IS1380 | Azospirillum sp. | 28 | 5.2 | |
| ISCARN87 | IS630 | Metagenomic data from CARNOULES | 28 | 5.2 | |
| ISCARN1 | IS607 | Metagenomic data from CARNOULES | 28 | 5.2 | |
| ISAnsp3 | IS66 | Anaeromyxobacter sp. | 28 | 5.2 | |
| ISApr6 | IS66 | Alpha proteobacterium | 28 | 5.2 | |
| ISBvu3 | IS66 | Bacteroides vulgatus | 28 | 5.2 | |
| IS1553 | IS256 | Mycobacterium tuberculosis | 28 | 5.2 | |
| ISBcen22 | IS3 | IS407 | Burkholderia cenocepacia | 28 | 5.2 |
| ISRm31 | IS701 | Sinorhizobium meliloti | 28 | 5.2 | |
| ISRm2 | IS66 | Sinorhizobium meliloti | 28 | 5.2 | |
| ISAs2 | IS30 | - | Aeromonas salmonicida | 28 | 5.2 |
| IS931 | IS256 | - | Burkholderia cepacia | 28 | 5.2 |
>ISPa32
Length = 1236
Score = 32.2 bits (16), Expect = 0.33
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 247 cgctgtgcggtcggtg 262
||||||||||||||||
Sbjct: 1103 cgctgtgcggtcggtg 1088
>ISMav9
Length = 1572
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 12 gtcgacgacctgggc 26
|||||||||||||||
Sbjct: 1070 gtcgacgacctgggc 1056
>ISTsu1
Length = 1315
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 10 aggtcgacgacctgg 24
|||||||||||||||
Sbjct: 404 aggtcgacgacctgg 418
>ISAfe13
Length = 2868
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 149 gcgggccttccagac 163
|||||||||||||||
Sbjct: 672 gcgggccttccagac 686
>ISMex34
Length = 658
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 58 tagggatcgctgacg 72
|||||||||||||||
Sbjct: 601 tagggatcgctgacg 587
>ISBcen2
Length = 1363
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 134 ggcgatccagtgagc 148
|||||||||||||||
Sbjct: 260 ggcgatccagtgagc 246
>TnXo19
Length = 18767
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 235 tgcaggcgaacccg 248
||||||||||||||
Sbjct: 1164 tgcaggcgaacccg 1177
>ISHel1
Length = 1563
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 187 atagacttcggata 200
||||||||||||||
Sbjct: 159 atagacttcggata 146
>ISWpi12
Length = 1384
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 206 gcagcagctgtttg 219
||||||||||||||
Sbjct: 1269 gcagcagctgtttg 1282
>ISAzs3
Length = 1613
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 23 gggcgtactggctg 36
||||||||||||||
Sbjct: 1232 gggcgtactggctg 1245
>ISCARN87
Length = 1142
Score = 28.2 bits (14), Expect = 5.2
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 83 cgatcctgccgctgcttg 100
||||| ||||||||||||
Sbjct: 665 cgatcttgccgctgcttg 648
>ISCARN1
Length = 2232
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 51 cagggcgtagggat 64
||||||||||||||
Sbjct: 1312 cagggcgtagggat 1299
>ISAnsp3
Length = 2518
Score = 28.2 bits (14), Expect = 5.2
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 3 ggcgttcaggtcgacgac 20
||||| ||||||||||||
Sbjct: 1499 ggcgtgcaggtcgacgac 1516
>ISApr6
Length = 2479
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 206 gcagcagctgtttg 219
||||||||||||||
Sbjct: 247 gcagcagctgtttg 260
>ISBvu3
Length = 2576
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 6 gttcaggtcgacga 19
||||||||||||||
Sbjct: 1642 gttcaggtcgacga 1655
>IS1553
Length = 1406
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 11 ggtcgacgacctgg 24
||||||||||||||
Sbjct: 475 ggtcgacgacctgg 488
>ISBcen22
Length = 1202
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 157 tccagactccagac 170
||||||||||||||
Sbjct: 693 tccagactccagac 680
>ISRm31
Length = 1426
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 73 agcgtcgtctcgat 86
||||||||||||||
Sbjct: 98 agcgtcgtctcgat 85
>ISRm2
Length = 2593
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 9 caggtcgacgacct 22
||||||||||||||
Sbjct: 1187 caggtcgacgacct 1174
>ISAs2
Length = 1084
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 172 ccgagccgctcccg 185
||||||||||||||
Sbjct: 599 ccgagccgctcccg 586
>IS931
Length = 1477
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 15 gacgacctgggcgt 28
||||||||||||||
Sbjct: 821 gacgacctgggcgt 808
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_201_length_262_cov_0.789189_ID_5572
(262 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| IS408 | IS21 | - | Burkholderia cepacia | 34 | 0.083 |
| ISThsp9 | Tn3 | Thiomonas sp. | 30 | 1.3 | |
| ISCARN25 | IS630 | Metagenomic data from CARNOULES | 30 | 1.3 | |
| ISBrsa1 | IS3 | IS3 | Brenneria salicis | 28 | 5.2 |
| ISAs14 | IS5 | IS903 | Aeromonas salmonicida | 28 | 5.2 |
| ISAs13 | IS5 | IS903 | Aeromonas salmonicida | 28 | 5.2 |
| ISEc52 | IS3 | IS3 | Escherichia coli | 28 | 5.2 |
| ISAod1 | IS256 | IS1249 | Actinomyces odontolyticus | 28 | 5.2 |
| ISUnCu16 | IS66 | ISBst12 | Uncultured bacterium | 28 | 5.2 |
| ISAzs22 | ISAs1 | Azospirillum sp. | 28 | 5.2 | |
| ISAzs8 | ISL3 | Azospirillum sp. | 28 | 5.2 | |
| ISMau1 | IS5 | ISL2 | Micromonospora aurantiaca | 28 | 5.2 |
| ISXoo5 | IS5 | IS5 | Xanthomonas oryzae | 28 | 5.2 |
| ISPna3 | IS5 | IS5 | Polaromonas naphthalenivorans | 28 | 5.2 |
| ISMno27 | IS6 | Methylobacterium nodulans | 28 | 5.2 | |
| ISMno28 | IS6 | Methylobacterium nodulans | 28 | 5.2 | |
| ISAau5 | ISNCY | Arthrobacter aurescens | 28 | 5.2 | |
| ISAar37 | IS3 | IS3 | Arthrobacter arilaitensis | 28 | 5.2 |
| ISCph10 | IS1380 | Chlorobium phaeobacteroides | 28 | 5.2 | |
| ISMav8 | IS1380 | Mycobacterium avium | 28 | 5.2 | |
| ISCph7 | IS1380 | Chlorobium phaeobacteroides | 28 | 5.2 | |
| ISAnsp4 | IS21 | Anaeromyxobacter sp. | 28 | 5.2 | |
| ISThsp11 | IS3 | IS3 | Thiomonas sp. | 28 | 5.2 |
| ISCARN11 | IS1595 | ISSod11 | Metagenomic data from CARNOULES | 28 | 5.2 |
| ISGdi17 | IS21 | Gluconacetobacter diazotrophicus | 28 | 5.2 | |
| ISDge12 | IS701 | Deinococcus geothermalis | 28 | 5.2 | |
| ISLxx6 | IS5 | IS427 | Leifsonia xyli | 28 | 5.2 |
| ISRta2 | IS256 | Ralstonia taiwanensis | 28 | 5.2 | |
| ISRssp5 | IS5 | IS903 | Roseovarius sp. | 28 | 5.2 |
| ISNfa1 | IS481 | Nocardia farcinica | 28 | 5.2 | |
| ISSusp1 | IS3 | IS51 | Sulfitobacter sp. | 28 | 5.2 |
| ISBad2 | IS3 | IS150 | Bifidobacterium adolescentis | 28 | 5.2 |
| ISMca6 | ISAs1 | Methylococcus capsulatus | 28 | 5.2 | |
| ISBvi1 | IS4 | IS4 | Burkholderia vietnamiensis | 28 | 5.2 |
| IS881 | IS5 | IS5 | Ralstonia eutropha | 28 | 5.2 |
| ISZmo1 | IS5 | IS1031 | Zymomonas mobilis | 28 | 5.2 |
| ISMt2 | IS21 | - | Mycobacterium tuberculosis | 28 | 5.2 |
| IS911 | IS3 | IS3 | Shigella dysenteriae | 28 | 5.2 |
| IS1394 | IS30 | - | Pseudomonas alcaligenes | 28 | 5.2 |
| IS1246 | IS5 | IS5 | Pseudomonas putida | 28 | 5.2 |
>IS408
Length = 2798
Score = 34.2 bits (17), Expect = 0.083
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 132 cggcaaacaccgcctcg 148
|||||||||||||||||
Sbjct: 1641 cggcaaacaccgcctcg 1657
>ISThsp9
Length = 6215
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 24 gcaccgcacgcgcgg 38
|||||||||||||||
Sbjct: 3638 gcaccgcacgcgcgg 3652
>ISCARN25
Length = 1114
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 82 tcgccgctcttgcgc 96
|||||||||||||||
Sbjct: 266 tcgccgctcttgcgc 252
>ISBrsa1
Length = 1249
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 159 acatcaccgcacca 172
||||||||||||||
Sbjct: 754 acatcaccgcacca 741
>ISAs14
Length = 1062
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 76 ccacactcgccgct 89
||||||||||||||
Sbjct: 526 ccacactcgccgct 513
>ISAs13
Length = 1062
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 76 ccacactcgccgct 89
||||||||||||||
Sbjct: 526 ccacactcgccgct 513
>ISEc52
Length = 1250
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 159 acatcaccgcacca 172
||||||||||||||
Sbjct: 754 acatcaccgcacca 741
>ISAod1
Length = 1334
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 110 tccgggtggtaggc 123
||||||||||||||
Sbjct: 668 tccgggtggtaggc 655
>ISUnCu16
Length = 1532
Score = 28.2 bits (14), Expect = 5.2
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 9 tttcaacatccttgagca 26
||||| ||||||||||||
Sbjct: 1252 tttcatcatccttgagca 1235
>ISAzs22
Length = 1267
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 137 aacaccgcctcggc 150
||||||||||||||
Sbjct: 368 aacaccgcctcggc 355
>ISAzs8
Length = 1373
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 142 cgcctcggcgggca 155
||||||||||||||
Sbjct: 920 cgcctcggcgggca 933
>ISMau1
Length = 914
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 132 cggcaaacaccgcc 145
||||||||||||||
Sbjct: 483 cggcaaacaccgcc 496
>ISXoo5
Length = 1607
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 145 ctcggcgggcacga 158
||||||||||||||
Sbjct: 607 ctcggcgggcacga 594
>ISPna3
Length = 1425
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 247 gctttgtgccgcgc 260
||||||||||||||
Sbjct: 853 gctttgtgccgcgc 840
>ISMno27
Length = 893
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 104 accacttccgggtg 117
||||||||||||||
Sbjct: 643 accacttccgggtg 656
>ISMno28
Length = 892
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 104 accacttccgggtg 117
||||||||||||||
Sbjct: 643 accacttccgggtg 656
>ISAau5
Length = 3989
Score = 28.2 bits (14), Expect = 5.2
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 112 cgggtggtaggcgtggat 129
||||||||||||| ||||
Sbjct: 2283 cgggtggtaggcggggat 2266
>ISAar37
Length = 1309
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 123 cgtggatttcggca 136
||||||||||||||
Sbjct: 599 cgtggatttcggca 586
>ISCph10
Length = 1785
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 15 catccttgagcacc 28
||||||||||||||
Sbjct: 1459 catccttgagcacc 1472
>ISMav8
Length = 2064
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 145 ctcggcgggcacga 158
||||||||||||||
Sbjct: 2036 ctcggcgggcacga 2023
>ISCph7
Length = 1778
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 15 catccttgagcacc 28
||||||||||||||
Sbjct: 1452 catccttgagcacc 1465
>ISAnsp4
Length = 2195
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 144 cctcggcgggcacg 157
||||||||||||||
Sbjct: 678 cctcggcgggcacg 665
>ISThsp11
Length = 1814
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 131 tcggcaaacaccgc 144
||||||||||||||
Sbjct: 903 tcggcaaacaccgc 916
>ISCARN11
Length = 1133
Score = 28.2 bits (14), Expect = 5.2
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 141 ccgcctcggcgggcacga 158
||||| ||||||||||||
Sbjct: 270 ccgccacggcgggcacga 287
>ISGdi17
Length = 2482
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 156 cgaacatcaccgca 169
||||||||||||||
Sbjct: 2006 cgaacatcaccgca 2019
>ISDge12
Length = 1145
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 144 cctcggcgggcacg 157
||||||||||||||
Sbjct: 554 cctcggcgggcacg 541
>ISLxx6
Length = 919
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 131 tcggcaaacaccgc 144
||||||||||||||
Sbjct: 750 tcggcaaacaccgc 763
>ISRta2
Length = 1386
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 139 caccgcctcggcgg 152
||||||||||||||
Sbjct: 162 caccgcctcggcgg 149
>ISRssp5
Length = 1047
Score = 28.2 bits (14), Expect = 5.2
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 52 catcaaggtggtgggcga 69
||||||||||| ||||||
Sbjct: 432 catcaaggtggagggcga 449
>ISNfa1
Length = 1112
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 221 tggcgcttcacatc 234
||||||||||||||
Sbjct: 81 tggcgcttcacatc 68
>ISSusp1
Length = 1228
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 63 tgggcgacacaatc 76
||||||||||||||
Sbjct: 809 tgggcgacacaatc 822
>ISBad2
Length = 1470
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 123 cgtggatttcggca 136
||||||||||||||
Sbjct: 646 cgtggatttcggca 633
>ISMca6
Length = 1180
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 139 caccgcctcggcgg 152
||||||||||||||
Sbjct: 916 caccgcctcggcgg 929
>ISBvi1
Length = 1455
Score = 28.2 bits (14), Expect = 5.2
Identities = 21/22 (95%), Gaps = 1/22 (4%)
Strand = Plus / Minus
Query: 240 ggaaggcgctttgtgccgcgcg 261
||||||||||||| ||||||||
Sbjct: 573 ggaaggcgctttg-gccgcgcg 553
>IS881
Length = 3033
Score = 28.2 bits (14), Expect = 5.2
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 85 ccgctcttgcgcatacgc 102
|||||||||||| |||||
Sbjct: 2673 ccgctcttgcgcgtacgc 2656
>ISZmo1
Length = 1068
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 244 ggcgctttgtgccg 257
||||||||||||||
Sbjct: 579 ggcgctttgtgccg 566
>ISMt2
Length = 2645
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 67 cgacacaatccaca 80
||||||||||||||
Sbjct: 1756 cgacacaatccaca 1769
>IS911
Length = 1250
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 159 acatcaccgcacca 172
||||||||||||||
Sbjct: 754 acatcaccgcacca 741
>IS1394
Length = 1100
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 205 ggcaatggcatcca 218
||||||||||||||
Sbjct: 963 ggcaatggcatcca 950
>IS1246
Length = 1275
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 45 gcactgccatcaag 58
||||||||||||||
Sbjct: 86 gcactgccatcaag 99
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_202_length_262_cov_0.789189_ID_5574
(262 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISBmu3 | IS21 | Burkholderia multivorans | 34 | 0.083 | |
| ISAar13 | ISL3 | Arthrobacter arilaitensis | 32 | 0.33 | |
| ISRme9 | IS21 | Ralstonia metallidurans | 32 | 0.33 | |
| TnAs1 | Tn3 | Aeromonas salmonicida | 30 | 1.3 | |
| ISPa36 | IS21 | Pseudomonas aeruginosa | 30 | 1.3 | |
| ISStma11 | ISL3 | Stenotrophomonas maltophilia | 30 | 1.3 | |
| ISCARN78 | IS21 | Metagenomic data from CARNOULES | 30 | 1.3 | |
| IS900 | IS110 | - | Mycobacterium paratuberculosis | 30 | 1.3 |
| ISHarch1 | IS200/IS605 | IS1341 | Halophilic archaeon | 28 | 5.2 |
| ISLil1 | IS256 | Leptonema illini | 28 | 5.2 | |
| ISYen4 | IS1182 | Yersinia enterocolitica | 28 | 5.2 | |
| ISRsp18 | IS5 | IS5 | Rhizobium sp. | 28 | 5.2 |
| ISMamg2 | IS3 | IS407 | Magnetospirillum magneticum | 28 | 5.2 |
| ISAnsp5 | IS21 | Anaeromyxobacter sp. | 28 | 5.2 | |
| ISStma10 | IS630 | Stenotrophomonas maltophilia | 28 | 5.2 | |
| ISCARN101 | IS3 | IS3 | Metagenomic data from CARNOULES | 28 | 5.2 |
| ISThsp8 | IS1634 | Thiomonas sp. | 28 | 5.2 | |
| ISThsp3 | IS66 | Thiomonas sp. | 28 | 5.2 | |
| ISMysp5 | IS481 | Mycobacterium sp. | 28 | 5.2 | |
| ISAzo4 | IS21 | Azoarcus sp. | 28 | 5.2 | |
| ISDra3 | IS630 | Deinococcus radiodurans | 28 | 5.2 | |
| IS408 | IS21 | - | Burkholderia cepacia | 28 | 5.2 |
>ISBmu3
Length = 2697
Score = 34.2 bits (17), Expect = 0.083
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 179 aaatcgctgatcacgct 195
|||||||||||||||||
Sbjct: 31 aaatcgctgatcacgct 15
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 130 caccgcgccggcga 143
||||||||||||||
Sbjct: 701 caccgcgccggcga 714
>ISAar13
Length = 1416
Score = 32.2 bits (16), Expect = 0.33
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 68 gcacgcggccgcaccg 83
||||||||||||||||
Sbjct: 629 gcacgcggccgcaccg 644
>ISRme9
Length = 2688
Score = 32.2 bits (16), Expect = 0.33
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 179 aaatcgctgatcacgc 194
||||||||||||||||
Sbjct: 31 aaatcgctgatcacgc 16
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 130 caccgcgccggcga 143
||||||||||||||
Sbjct: 699 caccgcgccggcga 712
>TnAs1
Length = 6694
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 86 aagccgcgcgccaag 100
|||||||||||||||
Sbjct: 2474 aagccgcgcgccaag 2460
>ISPa36
Length = 2468
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 214 cctgacctatgccga 228
|||||||||||||||
Sbjct: 2073 cctgacctatgccga 2087
>ISStma11
Length = 4621
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 184 gctgatcacgctggg 198
|||||||||||||||
Sbjct: 3824 gctgatcacgctggg 3810
>ISCARN78
Length = 2644
Score = 30.2 bits (15), Expect = 1.3
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 42 accccaagacgccacgcaa 60
|||||||||||||| ||||
Sbjct: 1660 accccaagacgccaagcaa 1678
>IS900
Length = 1451
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 123 tcgcagccaccgcgc 137
|||||||||||||||
Sbjct: 873 tcgcagccaccgcgc 887
>ISHarch1
Length = 1384
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 104 aacgctatcagtga 117
||||||||||||||
Sbjct: 958 aacgctatcagtga 945
>ISLil1
Length = 1378
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 219 cctatgccgagatc 232
||||||||||||||
Sbjct: 1327 cctatgccgagatc 1314
>ISYen4
Length = 1597
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 17 ccgaggagcatcat 30
||||||||||||||
Sbjct: 281 ccgaggagcatcat 268
>ISRsp18
Length = 1560
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 234 acgatcacctgccg 247
||||||||||||||
Sbjct: 628 acgatcacctgccg 615
>ISMamg2
Length = 1486
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 77 cgcaccgccaagcc 90
||||||||||||||
Sbjct: 424 cgcaccgccaagcc 411
>ISAnsp5
Length = 2192
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 126 cagccaccgcgccg 139
||||||||||||||
Sbjct: 252 cagccaccgcgccg 239
>ISStma10
Length = 1106
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 72 gcggccgcaccgcc 85
||||||||||||||
Sbjct: 225 gcggccgcaccgcc 212
>ISCARN101
Length = 1672
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 126 cagccaccgcgccg 139
||||||||||||||
Sbjct: 972 cagccaccgcgccg 985
>ISThsp8
Length = 1929
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 128 gccaccgcgccggc 141
||||||||||||||
Sbjct: 361 gccaccgcgccggc 348
>ISThsp3
Length = 2455
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 234 acgatcacctgccg 247
||||||||||||||
Sbjct: 1456 acgatcacctgccg 1469
>ISMysp5
Length = 1117
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 219 cctatgccgagatc 232
||||||||||||||
Sbjct: 722 cctatgccgagatc 735
>ISAzo4
Length = 2757
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 130 caccgcgccggcga 143
||||||||||||||
Sbjct: 652 caccgcgccggcga 665
>ISDra3
Length = 1065
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 10 gaagtttccgagga 23
||||||||||||||
Sbjct: 940 gaagtttccgagga 927
>IS408
Length = 2798
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 130 caccgcgccggcga 143
||||||||||||||
Sbjct: 688 caccgcgccggcga 701
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_203_length_262_cov_0.783784_ID_5576
(262 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISMtsp7 | IS110 | IS1111 | Methylobacterium sp. | 34 | 0.083 |
| ISSce1 | IS1 | ISMhu11 | Sorangium cellulosum | 32 | 0.33 |
| ISWpi2 | IS481 | Wolbachia pipientis | 30 | 1.3 | |
| ISRgn2 | IS66 | Ruminococcus gnavus | 30 | 1.3 | |
| ISRm21 | ISAs1 | Sinorhizobium meliloti | 30 | 1.3 | |
| ISPosp5 | IS3 | IS3 | Polaromonas sp. | 30 | 1.3 |
| IS1169 | IS5 | IS5 | Bacteroides fragilis | 30 | 1.3 |
| ISCco2 | IS1595 | ISPna2 | Campylobacter coli | 28 | 5.2 |
| ISHmu5 | IS200/IS605 | Halomicrobium mukohataei | 28 | 5.2 | |
| ISMgi2 | IS1182 | Mycobacterium gilvum | 28 | 5.2 | |
| ISCARN106 | IS630 | Metagenomic data from CARNOULES | 28 | 5.2 | |
| ISAzo31 | IS5 | IS5 | Azoarcus sp. | 28 | 5.2 |
| ISLpn1 | IS4 | IS10 | Legionella pneumophila | 28 | 5.2 |
| ISBce7 | IS4 | IS231 | Bacillus cereus | 28 | 5.2 |
| ISMma19 | IS200/IS605 | Methanosarcina mazei | 28 | 5.2 | |
| IS1408 | IS256 | - | Mycobacterium branderi | 28 | 5.2 |
| IS1395 | IS256 | - | Mycobacterium xenopi | 28 | 5.2 |
| IS1081 | IS256 | - | Mycobacterium bovis | 28 | 5.2 |
>ISMtsp7
Length = 1316
Score = 34.2 bits (17), Expect = 0.083
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 128 gtattcctcagcgacaaccac 148
||||||||||||||| |||||
Sbjct: 1292 gtattcctcagcgacgaccac 1272
>ISSce1
Length = 4601
Score = 32.2 bits (16), Expect = 0.33
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 85 cggtgaacgccagcgc 100
||||||||||||||||
Sbjct: 3248 cggtgaacgccagcgc 3233
>ISWpi2
Length = 1189
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 233 gacactttaaaaaag 247
|||||||||||||||
Sbjct: 23 gacactttaaaaaag 37
>ISRgn2
Length = 2745
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 159 tagtaaatatctatc 173
|||||||||||||||
Sbjct: 1529 tagtaaatatctatc 1543
>ISRm21
Length = 1167
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 182 agcccggcctcttgg 196
|||||||||||||||
Sbjct: 666 agcccggcctcttgg 680
>ISPosp5
Length = 1262
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 241 aaaaaagcgtcggcc 255
|||||||||||||||
Sbjct: 325 aaaaaagcgtcggcc 339
>IS1169
Length = 1317
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 191 tcttggtattgaatg 205
|||||||||||||||
Sbjct: 388 tcttggtattgaatg 402
>ISCco2
Length = 7852
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 40 agaggtttttggag 53
||||||||||||||
Sbjct: 4274 agaggtttttggag 4261
>ISHmu5
Length = 1847
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 180 gaagcccggcctct 193
||||||||||||||
Sbjct: 1478 gaagcccggcctct 1465
>ISMgi2
Length = 1770
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 137 agcgacaaccactg 150
||||||||||||||
Sbjct: 1612 agcgacaaccactg 1625
>ISCARN106
Length = 1148
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 15 taagcgttttacgt 28
||||||||||||||
Sbjct: 992 taagcgttttacgt 979
>ISAzo31
Length = 1324
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 249 gtcggccagtttct 262
||||||||||||||
Sbjct: 184 gtcggccagtttct 171
>ISLpn1
Length = 1355
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 234 acactttaaaaaag 247
||||||||||||||
Sbjct: 46 acactttaaaaaag 33
>ISBce7
Length = 2039
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 102 taagcaaaaaattg 115
||||||||||||||
Sbjct: 781 taagcaaaaaattg 794
>ISMma19
Length = 1708
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 155 tttttagtaaatat 168
||||||||||||||
Sbjct: 462 tttttagtaaatat 449
>IS1408
Length = 1325
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 85 cggtgaacgccagc 98
||||||||||||||
Sbjct: 1023 cggtgaacgccagc 1010
>IS1395
Length = 1323
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 85 cggtgaacgccagc 98
||||||||||||||
Sbjct: 1021 cggtgaacgccagc 1008
>IS1081
Length = 1435
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 85 cggtgaacgccagc 98
||||||||||||||
Sbjct: 1095 cggtgaacgccagc 1082
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_204_length_262_cov_1.05946_ID_5578
(262 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISUnCu12 | IS1380 | Uncultured marine microorganism | 32 | 0.33 | |
| ISRel9 | IS110 | IS1111 | Rhizobium etli | 30 | 1.3 |
| ISCARN116 | IS3 | IS407 | Metagenomic data from CARNOULES | 30 | 1.3 |
| ISCARN103 | IS1182 | Metagenomic data from CARNOULES | 30 | 1.3 | |
| ISPpu5 | IS110 | IS1111 | Pseudomonas putida | 30 | 1.3 |
| IS1631 | IS21 | - | Bradyrhizobium japonicum | 30 | 1.3 |
| ISAeca3 | IS110 | IS1111 | Aeromonas caviae | 28 | 5.2 |
| ISHwa24 | IS200/IS605 | IS1341 | Haloquadratum walsbyi | 28 | 5.2 |
| ISH39 | IS200/IS605 | IS1341 | Halobacterium salinarum | 28 | 5.2 |
| ISPko2 | IS256 | Paracoccus kondratievae | 28 | 5.2 | |
| ISAzs32 | IS110 | IS1111 | Azospirillum sp. | 28 | 5.2 |
| ISAcma23 | ISL3 | Acaryochloris marina | 28 | 5.2 | |
| ISFal3B | IS5 | IS1031 | Frankia alni | 28 | 5.2 |
| IS466 | ISL3 | - | Streptomyces coelicolor | 28 | 5.2 |
>ISUnCu12
Length = 1597
Score = 32.2 bits (16), Expect = 0.33
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 111 tacaccaagtccgacc 126
||||||||||||||||
Sbjct: 1175 tacaccaagtccgacc 1190
>ISRel9
Length = 1553
Score = 30.2 bits (15), Expect = 1.3
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 63 gacctggttgatctcttcg 81
||||||||||||| |||||
Sbjct: 159 gacctggttgatcacttcg 177
>ISCARN116
Length = 1260
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 67 tggttgatctcttcg 81
|||||||||||||||
Sbjct: 560 tggttgatctcttcg 546
>ISCARN103
Length = 1410
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 88 ccacgcctggctggc 102
|||||||||||||||
Sbjct: 646 ccacgcctggctggc 632
>ISPpu5
Length = 1342
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 30 aagattgttggtgca 44
|||||||||||||||
Sbjct: 878 aagattgttggtgca 892
>IS1631
Length = 2712
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 61 aggacctggttgatc 75
|||||||||||||||
Sbjct: 475 aggacctggttgatc 489
>ISAeca3
Length = 1340
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 32 gattgttggtgcaa 45
||||||||||||||
Sbjct: 891 gattgttggtgcaa 904
>ISHwa24
Length = 1500
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 117 aagtccgaccagta 130
||||||||||||||
Sbjct: 595 aagtccgaccagta 582
>ISH39
Length = 1477
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 117 aagtccgaccagta 130
||||||||||||||
Sbjct: 584 aagtccgaccagta 571
>ISPko2
Length = 1396
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 48 ttgttcgaggaaga 61
||||||||||||||
Sbjct: 209 ttgttcgaggaaga 222
>ISAzs32
Length = 1601
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 144 ctgtctggcgacct 157
||||||||||||||
Sbjct: 1262 ctgtctggcgacct 1249
>ISAcma23
Length = 1810
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 55 aggaagaggacctg 68
||||||||||||||
Sbjct: 1312 aggaagaggacctg 1325
>ISFal3B
Length = 1130
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 138 cagaagctgtctgg 151
||||||||||||||
Sbjct: 1 cagaagctgtctgg 14
>IS466
Length = 1628
Score = 28.2 bits (14), Expect = 5.2
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 70 ttgatctcttcgaa 83
||||||||||||||
Sbjct: 1116 ttgatctcttcgaa 1103
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_205_length_261_cov_0.793478_ID_5580
(261 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISAau5 | ISNCY | Arthrobacter aurescens | 32 | 0.33 | |
| ISStma17 | IS3 | IS51 | Stenotrophomonas maltophilia | 30 | 1.3 |
| ISAfe7 | IS3 | IS51 | Acidithiobacillus ferrooxidans | 30 | 1.3 |
| ISDpr7 | ISAzo13 | Delta proteobacterium | 30 | 1.3 | |
| ISEc37 | IS91 | Escherichia coli | 28 | 5.1 | |
| ISTde1 | ISNCY | IS1202 | Treponema denticola | 28 | 5.1 |
| ISMxa3 | IS66 | ISBst12 | Myxococcus xanthus | 28 | 5.1 |
| ISGbe1 | IS3 | IS407 | Granulibacter bethesdensis | 28 | 5.1 |
| ISDeal1 | IS66 | Dethiobacter alkaliphilus | 28 | 5.1 | |
| ISRsp2 | IS21 | - | Rhizobium sp. | 28 | 5.1 |
>ISAau5
Length = 3989
Score = 32.2 bits (16), Expect = 0.33
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 159 gaacggcaccaggcaa 174
||||||||||||||||
Sbjct: 818 gaacggcaccaggcaa 803
>ISStma17
Length = 1321
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 125 cgcgtctggcaggcc 139
|||||||||||||||
Sbjct: 539 cgcgtctggcaggcc 553
>ISAfe7
Length = 1329
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 125 cgcgtctggcaggcc 139
|||||||||||||||
Sbjct: 548 cgcgtctggcaggcc 562
>ISDpr7
Length = 1289
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 26 tatcggttcgatttt 40
|||||||||||||||
Sbjct: 78 tatcggttcgatttt 64
>ISEc37
Length = 1828
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 179 ctgacctggtgatg 192
||||||||||||||
Sbjct: 1058 ctgacctggtgatg 1071
>ISTde1
Length = 1327
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 29 cggttcgattttgt 42
||||||||||||||
Sbjct: 1125 cggttcgattttgt 1112
>ISMxa3
Length = 1926
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 204 ttttcctgcttgcg 217
||||||||||||||
Sbjct: 1405 ttttcctgcttgcg 1392
>ISGbe1
Length = 1269
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 69 tccggatactgacc 82
||||||||||||||
Sbjct: 751 tccggatactgacc 764
>ISDeal1
Length = 2525
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 201 ggtttttcctgctt 214
||||||||||||||
Sbjct: 2048 ggtttttcctgctt 2035
>ISRsp2
Length = 2623
Score = 28.2 bits (14), Expect = 5.1
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 186 ggtgatggcatgaatggt 203
||||||||||| ||||||
Sbjct: 1612 ggtgatggcattaatggt 1595
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_206_length_261_cov_0.793478_ID_5582
(261 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| TnAs1 | Tn3 | Aeromonas salmonicida | 30 | 1.3 | |
| ISCARN74 | IS5 | IS5 | Metagenomic data from CARNOULES | 30 | 1.3 |
| ISGdi17 | IS21 | Gluconacetobacter diazotrophicus | 30 | 1.3 | |
| ISDvu5 | ISL3 | Desulfovibrio vulgaris | 30 | 1.3 | |
| ISDpr1 | IS4 | IS4Sa | delta proteobacterium | 30 | 1.3 |
| ISBcen13 | IS21 | Burkholderia cenocepacia | 30 | 1.3 | |
| ISPpa5 | IS66 | Paracoccus pantotrophus | 30 | 1.3 | |
| ISHmu9 | IS6 | Halomicrobium mukohataei | 28 | 5.1 | |
| ISHhu9 | IS200/IS605 | IS1341 | Halobacterium hubeiense | 28 | 5.1 |
| ISNamo8 | IS6 | Natronomonas moolapensis | 28 | 5.1 | |
| ISAzs21 | IS66 | Azospirillum sp. | 28 | 5.1 | |
| ISRhru6 | IS5 | IS1031 | Rhodospirillum rubrum | 28 | 5.1 |
| ISCARN64 | IS3 | IS3 | Metagenomic data from CARNOULES | 28 | 5.1 |
| ISVei5 | IS5 | IS5 | Verminephrobacter eiseniae | 28 | 5.1 |
| ISAma4 | IS66 | ISBst12 | Alteromonas macleodii | 28 | 5.1 |
| ISMsm6 | IS1634 | Mycobacterium smegmatis | 28 | 5.1 | |
| ISHne4 | IS110 | Hyphomonas neptunium | 28 | 5.1 | |
| ISHne2 | IS481 | Hyphomonas neptunium | 28 | 5.1 | |
| ISTesp3 | IS3 | IS51 | Terrabacter sp. | 28 | 5.1 |
| ISGur9 | IS21 | Geobacter uraniumreducens | 28 | 5.1 | |
| ISSisp1 | IS3 | IS407 | Silicibacter sp. | 28 | 5.1 |
| ISNmu2 | IS3 | IS407 | Nitrosospira multiformis | 28 | 5.1 |
| ISNmu1 | IS3 | IS3 | Nitrosospira multiformis | 28 | 5.1 |
| ISPssy | IS5 | IS5 | Pseudomonas syringae | 28 | 5.1 |
| ISBian1 | IS5 | IS5 | Bifidobacterium animalis | 28 | 5.1 |
| ISPsy31 | IS3 | IS3 | Pseudomonas syringae | 28 | 5.1 |
| IS1601 | IS256 | - | Mycobacterium avium | 28 | 5.1 |
| IS1489v1 | ISL3 | - | Pseudomonas putida | 28 | 5.1 |
>TnAs1
Length = 6694
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 203 tcgcgcttgagtgcg 217
|||||||||||||||
Sbjct: 5196 tcgcgcttgagtgcg 5182
>ISCARN74
Length = 1203
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 224 acgccgatatgcgcc 238
|||||||||||||||
Sbjct: 618 acgccgatatgcgcc 604
>ISGdi17
Length = 2482
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 109 ccaggtcgccagttt 123
|||||||||||||||
Sbjct: 304 ccaggtcgccagttt 290
>ISDvu5
Length = 1357
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 120 gtttttcgaattcgc 134
|||||||||||||||
Sbjct: 1075 gtttttcgaattcgc 1089
>ISDpr1
Length = 1325
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 95 gtcagccgctcaacc 109
|||||||||||||||
Sbjct: 377 gtcagccgctcaacc 391
>ISBcen13
Length = 1957
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 1 cgcgatctcgcgctc 15
|||||||||||||||
Sbjct: 164 cgcgatctcgcgctc 150
>ISPpa5
Length = 2829
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 3 cgatctcgcgctcga 17
|||||||||||||||
Sbjct: 1088 cgatctcgcgctcga 1074
>ISHmu9
Length = 697
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 24 cgatgaggcggtcg 37
||||||||||||||
Sbjct: 78 cgatgaggcggtcg 65
>ISHhu9
Length = 1441
Score = 28.2 bits (14), Expect = 5.1
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 204 cgcgcttgagtgcgcgaa 221
|||| |||||||||||||
Sbjct: 814 cgcggttgagtgcgcgaa 797
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 21 agtcgatgaggcgg 34
||||||||||||||
Sbjct: 880 agtcgatgaggcgg 867
>ISNamo8
Length = 696
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 71 agaagcgacaccac 84
||||||||||||||
Sbjct: 115 agaagcgacaccac 128
>ISAzs21
Length = 2598
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 133 gcccgtcgcctccg 146
||||||||||||||
Sbjct: 1831 gcccgtcgcctccg 1844
>ISRhru6
Length = 941
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 247 ggccgccccgcttc 260
||||||||||||||
Sbjct: 200 ggccgccccgcttc 187
>ISCARN64
Length = 1258
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 224 acgccgatatgcgc 237
||||||||||||||
Sbjct: 395 acgccgatatgcgc 382
>ISVei5
Length = 1620
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 241 gccgcgggccgccc 254
||||||||||||||
Sbjct: 336 gccgcgggccgccc 349
>ISAma4
Length = 1529
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 229 gatatgcgcccagc 242
||||||||||||||
Sbjct: 988 gatatgcgcccagc 975
>ISMsm6
Length = 1765
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 64 gacatcaagaagcg 77
||||||||||||||
Sbjct: 1131 gacatcaagaagcg 1144
>ISHne4
Length = 1166
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 90 gccatgtcagccgc 103
||||||||||||||
Sbjct: 816 gccatgtcagccgc 829
>ISHne2
Length = 1316
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 200 ccttcgcgcttgag 213
||||||||||||||
Sbjct: 442 ccttcgcgcttgag 429
>ISTesp3
Length = 1373
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 51 cgcccttgaggctg 64
||||||||||||||
Sbjct: 1020 cgcccttgaggctg 1007
>ISGur9
Length = 2553
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 225 cgccgatatgcgcc 238
||||||||||||||
Sbjct: 754 cgccgatatgcgcc 741
>ISSisp1
Length = 1236
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 4 gatctcgcgctcga 17
||||||||||||||
Sbjct: 295 gatctcgcgctcga 308
>ISNmu2
Length = 1243
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 66 catcaagaagcgac 79
||||||||||||||
Sbjct: 294 catcaagaagcgac 281
>ISNmu1
Length = 1221
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 216 cgcgaataacgccg 229
||||||||||||||
Sbjct: 335 cgcgaataacgccg 322
>ISPssy
Length = 1188
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 224 acgccgatatgcgc 237
||||||||||||||
Sbjct: 607 acgccgatatgcgc 594
>ISBian1
Length = 1134
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 224 acgccgatatgcgc 237
||||||||||||||
Sbjct: 605 acgccgatatgcgc 592
>ISPsy31
Length = 1667
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 145 cgcagcaccaacaa 158
||||||||||||||
Sbjct: 531 cgcagcaccaacaa 518
>IS1601
Length = 1417
Score = 28.2 bits (14), Expect = 5.1
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 20 tagtcgatgaggcggtcg 37
||||||||||| ||||||
Sbjct: 1027 tagtcgatgagccggtcg 1010
>IS1489v1
Length = 1898
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 31 gcggtcgcctttga 44
||||||||||||||
Sbjct: 1024 gcggtcgcctttga 1011
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_207_length_261_cov_0.782609_ID_5584
(261 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISStma5 | IS3 | IS3 | Stenotrophomonas maltophilia | 36 | 0.021 |
| ISHar5 | IS30 | Herminiimonas arsenicoxydans | 36 | 0.021 | |
| ISStma14 | IS3 | IS3 | Stenotrophomonas maltophilia | 34 | 0.083 |
| ISRm15 | IS5 | IS1031 | Sinorhizobium meliloti | 32 | 0.33 |
| ISGau7 | IS21 | Gemmatimonas aurantiaca | 30 | 1.3 | |
| ISMtsp18 | IS3 | IS2 | Methylobacterium sp. | 30 | 1.3 |
| ISFsp15 | IS1380 | Frankia sp. | 30 | 1.3 | |
| ISFsp14 | IS1380 | Frankia sp. | 30 | 1.3 | |
| ISCARN21 | IS630 | Metagenomic data from CARNOULES | 30 | 1.3 | |
| ISAtu5 | IS3 | IS407 | Agrobacterium tumefaciens | 30 | 1.3 |
| ISXo18 | IS3 | IS407 | Xanthomonas oryzae | 30 | 1.3 |
| ISXo17 | IS3 | IS407 | Xanthomonas oryzae | 30 | 1.3 |
| ISDssp1 | ISAzo13 | Desulfobacterium sp. | 30 | 1.3 | |
| ISAeme20 | IS3 | IS3 | Aeromonas media | 28 | 5.1 |
| ISHbo8 | IS200/IS605 | IS1341 | Halogeometricum borinquense | 28 | 5.1 |
| TnAs2 | Tn3 | Aeromonas salmonicida | 28 | 5.1 | |
| ISAs23 | IS1595 | ISPna2 | Aeromonas salmonicida | 28 | 5.1 |
| ISFK1 | IS21 | Bradyrhizobium japonicum | 28 | 5.1 | |
| ISMno13 | IS66 | Methylobacterium nodulans | 28 | 5.1 | |
| ISAau2 | IS21 | Arthrobacter aurescens | 28 | 5.1 | |
| ISMex37 | IS3 | IS150 | Methylobacterium extorquens | 28 | 5.1 |
| ISAfe5 | IS3 | IS3 | Acidithiobacillus ferrooxidans | 28 | 5.1 |
| ISFsp3 | IS21 | Frankia sp. | 28 | 5.1 | |
| IS112 | IS5 | ISL2 | Streptomyces albus | 28 | 5.1 |
>ISStma5
Length = 1228
Score = 36.2 bits (18), Expect = 0.021
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 199 acgcgccacccggttcag 216
||||||||||||||||||
Sbjct: 603 acgcgccacccggttcag 586
>ISHar5
Length = 1253
Score = 36.2 bits (18), Expect = 0.021
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 237 tcttcatgctcggccagtgtca 258
|||||| |||||||||||||||
Sbjct: 281 tcttcacgctcggccagtgtca 260
>ISStma14
Length = 1231
Score = 34.2 bits (17), Expect = 0.083
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 200 cgcgccacccggttcag 216
|||||||||||||||||
Sbjct: 605 cgcgccacccggttcag 589
>ISRm15
Length = 934
Score = 32.2 bits (16), Expect = 0.33
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 164 gccgccgtcagcaaaaatat 183
||||||||||||||| ||||
Sbjct: 656 gccgccgtcagcaaagatat 637
>ISGau7
Length = 2510
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 159 acaccgccgccgtca 173
|||||||||||||||
Sbjct: 2308 acaccgccgccgtca 2322
>ISMtsp18
Length = 1341
Score = 30.2 bits (15), Expect = 1.3
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 205 cacccggttcagcagcgcg 223
||||| |||||||||||||
Sbjct: 667 caccctgttcagcagcgcg 649
>ISFsp15
Length = 1695
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 156 cgaacaccgccgccg 170
|||||||||||||||
Sbjct: 726 cgaacaccgccgccg 740
>ISFsp14
Length = 1696
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 156 cgaacaccgccgccg 170
|||||||||||||||
Sbjct: 726 cgaacaccgccgccg 740
>ISCARN21
Length = 1249
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 241 catgctcggccagtg 255
|||||||||||||||
Sbjct: 457 catgctcggccagtg 443
>ISAtu5
Length = 1271
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 61 gcggcctttgcgcca 75
|||||||||||||||
Sbjct: 137 gcggcctttgcgcca 123
>ISXo18
Length = 1189
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 152 acaacgaacaccgcc 166
|||||||||||||||
Sbjct: 1067 acaacgaacaccgcc 1081
>ISXo17
Length = 1192
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 152 acaacgaacaccgcc 166
|||||||||||||||
Sbjct: 1068 acaacgaacaccgcc 1082
>ISDssp1
Length = 1305
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 161 accgccgccgtcagc 175
|||||||||||||||
Sbjct: 909 accgccgccgtcagc 895
>ISAeme20
Length = 1264
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 15 cgaagcccaacgaa 28
||||||||||||||
Sbjct: 726 cgaagcccaacgaa 739
>ISHbo8
Length = 1655
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 202 cgccacccggttca 215
||||||||||||||
Sbjct: 1234 cgccacccggttca 1221
>TnAs2
Length = 8650
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 2 gacacccagcggcc 15
||||||||||||||
Sbjct: 5199 gacacccagcggcc 5212
>ISAs23
Length = 1032
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 169 cgtcagcaaaaata 182
||||||||||||||
Sbjct: 415 cgtcagcaaaaata 428
>ISFK1
Length = 2592
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 164 gccgccgtcagcaa 177
||||||||||||||
Sbjct: 825 gccgccgtcagcaa 838
>ISMno13
Length = 2459
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 111 tctcgtcggcaaac 124
||||||||||||||
Sbjct: 1646 tctcgtcggcaaac 1633
>ISAau2
Length = 2222
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 6 cccagcggccgaag 19
||||||||||||||
Sbjct: 2013 cccagcggccgaag 2000
>ISMex37
Length = 1510
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 44 cgccgatcatcgct 57
||||||||||||||
Sbjct: 609 cgccgatcatcgct 622
>ISAfe5
Length = 1658
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 163 cgccgccgtcagca 176
||||||||||||||
Sbjct: 635 cgccgccgtcagca 622
>ISFsp3
Length = 2209
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 6 cccagcggccgaag 19
||||||||||||||
Sbjct: 1998 cccagcggccgaag 1985
>IS112
Length = 883
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 61 gcggcctttgcgcc 74
||||||||||||||
Sbjct: 547 gcggcctttgcgcc 534
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_208_length_261_cov_0.61413_ID_5586
(261 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISNml2 | IS1380 | Nakamurella multipartita | 38 | 0.005 | |
| TnAs2 | Tn3 | Aeromonas salmonicida | 34 | 0.083 | |
| ISMtsp14 | IS5 | IS1031 | Methylobacterium sp. | 34 | 0.083 |
| ISMno21 | IS630 | Methylobacterium nodulans | 32 | 0.33 | |
| ISMav7 | IS1380 | Mycobacterium avium | 32 | 0.33 | |
| ISMdi1 | IS630 | Methylobacterium dichloromethanicum | 32 | 0.33 | |
| ISAli16 | IS110 | Azospirillum lipoferum | 32 | 0.33 | |
| ISRel26 | ISNCY | IS1202 | Rhizobium etli | 30 | 1.3 |
| ISHti3 | IS200/IS605 | IS1341 | Halorhabdus tiamatea | 30 | 1.3 |
| ISEle1 | IS256 | IS1249 | Eggerthella lenta | 30 | 1.3 |
| ISRjo3 | ISNCY | ISDol1 | Rhodococcus jostii | 30 | 1.3 |
| ISAar9 | IS1380 | Arthrobacter arilaitensis | 30 | 1.3 | |
| ISMex10 | ISL3 | Methylobacterium extorquens | 30 | 1.3 | |
| ISMex21 | IS630 | Methylobacterium extorquens | 30 | 1.3 | |
| ISCARN83 | IS1595 | ISNwi1 | Metagenomic data from CARNOULES | 30 | 1.3 |
| ISAli8 | IS110 | Azospirillum lipoferum | 30 | 1.3 | |
| ISDge5 | IS701 | Deinococcus geothermalis | 30 | 1.3 | |
| ISTesp3 | IS3 | IS51 | Terrabacter sp. | 30 | 1.3 |
| ISRhru1 | IS1595 | ISSod11 | Rhodospirillum rubrum | 30 | 1.3 |
| ISBvi3 | IS3 | IS3 | Burkholderia vietnamiensis | 30 | 1.3 |
| ISNpe31 | IS200/IS605 | IS1341 | Natrinema pellirubrum | 28 | 5.1 |
| ISRel10 | ISNCY | IS1202 | Rhizobium etli | 28 | 5.1 |
| ISHwa29 | IS200/IS605 | IS1341 | Haloquadratum walsbyi | 28 | 5.1 |
| ISAs22 | IS3 | IS407 | Aeromonas salmonicida | 28 | 5.1 |
| ISAzs37 | IS630 | Azospirillum sp. | 28 | 5.1 | |
| ISGau4 | IS3 | IS407 | Gemmatimonas aurantiaca | 28 | 5.1 |
| ISGeob5 | IS5 | IS427 | Geodermatophilus obscurus | 28 | 5.1 |
| ISBmu30 | IS66 | Burkholderia multivorans | 28 | 5.1 | |
| ISSysp4 | IS5 | IS5 | Synechococcus sp. | 28 | 5.1 |
| ISMno14 | IS110 | IS1111 | Methylobacterium nodulans | 28 | 5.1 |
| ISMtsp16 | IS481 | Methylobacterium sp. | 28 | 5.1 | |
| ISMno5 | ISL3 | Methylobacterium nodulans | 28 | 5.1 | |
| ISMex11 | IS3 | IS407 | Methylobacterium extorquens | 28 | 5.1 |
| ISMex39 | IS21 | Methylobacterium extorquens | 28 | 5.1 | |
| ISCARN21 | IS630 | Metagenomic data from CARNOULES | 28 | 5.1 | |
| ISDds1 | IS3 | IS3 | Deinococcus deserti | 28 | 5.1 |
| ISSsp4 | IS21 | Sphingomonas sp. | 28 | 5.1 | |
| ISMul1 | ISAs1 | Mycobacterium ulcerans | 28 | 5.1 | |
| ISGNB1-1 | IS5 | IS903 | Uncultured bacterium | 28 | 5.1 |
| ISBcen22 | IS3 | IS407 | Burkholderia cenocepacia | 28 | 5.1 |
| ISRhosp4 | IS701 | Rhodococcus sp. | 28 | 5.1 | |
| ISFal1 | ISL3 | Frankia alni | 28 | 5.1 | |
| ISGka2 | IS110 | Geobacillus kaustophilus | 28 | 5.1 | |
| ISBcen20 | IS5 | IS427 | Burkholderia cenocepacia | 28 | 5.1 |
| ISMva1 | IS1595 | ISSod11 | Mycobacterium vanbaalenii | 28 | 5.1 |
| IS885 | IS630 | Ralstonia eutropha | 28 | 5.1 | |
| IS2404 | ISAs1 | - | Mycobacterium ulcerans | 28 | 5.1 |
>ISNml2
Length = 1689
Score = 38.2 bits (19), Expect = 0.005
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 194 ccacccgcttgccggtggc 212
|||||||||||||||||||
Sbjct: 181 ccacccgcttgccggtggc 163
>TnAs2
Length = 8650
Score = 34.2 bits (17), Expect = 0.083
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 75 tcacgctgctgccgctg 91
|||||||||||||||||
Sbjct: 1357 tcacgctgctgccgctg 1373
>ISMtsp14
Length = 860
Score = 34.2 bits (17), Expect = 0.083
Identities = 29/33 (87%)
Strand = Plus / Plus
Query: 229 ctcgcccggccggtgcacggccgccggctggtc 261
|||||| || |||||| | ||||||||||||||
Sbjct: 719 ctcgcctgggcggtgcgctgccgccggctggtc 751
>ISMno21
Length = 1162
Score = 32.2 bits (16), Expect = 0.33
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 72 acatcacgctgctgccgctg 91
||||||| ||||||||||||
Sbjct: 937 acatcaccctgctgccgctg 956
>ISMav7
Length = 1691
Score = 32.2 bits (16), Expect = 0.33
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 119 gcgcgcctgcccgggg 134
||||||||||||||||
Sbjct: 446 gcgcgcctgcccgggg 461
>ISMdi1
Length = 1058
Score = 32.2 bits (16), Expect = 0.33
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 180 ccgcgcgccggccgcc 195
||||||||||||||||
Sbjct: 841 ccgcgcgccggccgcc 826
>ISAli16
Length = 1153
Score = 32.2 bits (16), Expect = 0.33
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 165 cgtcgctgatccgctc 180
||||||||||||||||
Sbjct: 722 cgtcgctgatccgctc 707
>ISRel26
Length = 1634
Score = 30.2 bits (15), Expect = 1.3
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 159 gaacaccgtcgctgatccg 177
|||| ||||||||||||||
Sbjct: 304 gaacgccgtcgctgatccg 286
>ISHti3
Length = 1400
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 44 tgcgccgtcgcggtt 58
|||||||||||||||
Sbjct: 1156 tgcgccgtcgcggtt 1142
>ISEle1
Length = 1334
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 110 gcgctcatggcgcgc 124
|||||||||||||||
Sbjct: 576 gcgctcatggcgcgc 590
>ISRjo3
Length = 1638
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 198 ccgcttgccggtggc 212
|||||||||||||||
Sbjct: 619 ccgcttgccggtggc 605
>ISAar9
Length = 1735
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 73 catcacgctgctgcc 87
|||||||||||||||
Sbjct: 1010 catcacgctgctgcc 996
>ISMex10
Length = 1754
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 242 tgcacggccgccggc 256
|||||||||||||||
Sbjct: 752 tgcacggccgccggc 738
>ISMex21
Length = 1040
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 180 ccgcgcgccggccgc 194
|||||||||||||||
Sbjct: 817 ccgcgcgccggccgc 803
>ISCARN83
Length = 2369
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 36 tgttggtgtgcgccg 50
|||||||||||||||
Sbjct: 1111 tgttggtgtgcgccg 1097
>ISAli8
Length = 1151
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 200 gcttgccggtggcgg 214
|||||||||||||||
Sbjct: 405 gcttgccggtggcgg 419
>ISDge5
Length = 1150
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 134 ggcgaactgctggag 148
|||||||||||||||
Sbjct: 919 ggcgaactgctggag 905
>ISTesp3
Length = 1373
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 170 ctgatccgctccgcg 184
|||||||||||||||
Sbjct: 604 ctgatccgctccgcg 590
>ISRhru1
Length = 1027
Score = 30.2 bits (15), Expect = 1.3
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 184 gcgccggccgccacccgct 202
||||| |||||||||||||
Sbjct: 568 gcgcccgccgccacccgct 550
>ISBvi3
Length = 1282
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 199 cgcttgccggtggcg 213
|||||||||||||||
Sbjct: 713 cgcttgccggtggcg 727
>ISNpe31
Length = 1667
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 225 catcctcgcccggc 238
||||||||||||||
Sbjct: 1663 catcctcgcccggc 1650
>ISRel10
Length = 2528
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 200 gcttgccggtggcg 213
||||||||||||||
Sbjct: 664 gcttgccggtggcg 651
>ISHwa29
Length = 1670
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 225 catcctcgcccggc 238
||||||||||||||
Sbjct: 1666 catcctcgcccggc 1653
>ISAs22
Length = 1198
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 113 ctcatggcgcgcct 126
||||||||||||||
Sbjct: 225 ctcatggcgcgcct 238
>ISAzs37
Length = 1058
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 73 catcacgctgctgc 86
||||||||||||||
Sbjct: 479 catcacgctgctgc 466
>ISGau4
Length = 1210
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 202 ttgccggtggcgga 215
||||||||||||||
Sbjct: 128 ttgccggtggcgga 141
>ISGeob5
Length = 903
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 239 cggtgcacggccgc 252
||||||||||||||
Sbjct: 153 cggtgcacggccgc 166
>ISBmu30
Length = 2344
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 116 atggcgcgcctgcc 129
||||||||||||||
Sbjct: 469 atggcgcgcctgcc 456
>ISSysp4
Length = 1724
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 67 caaacacatcacgc 80
||||||||||||||
Sbjct: 771 caaacacatcacgc 758
>ISMno14
Length = 1428
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 236 ggccggtgcacggc 249
||||||||||||||
Sbjct: 749 ggccggtgcacggc 762
>ISMtsp16
Length = 1023
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 77 acgctgctgccgct 90
||||||||||||||
Sbjct: 297 acgctgctgccgct 310
>ISMno5
Length = 1728
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 182 gcgcgccggccgcc 195
||||||||||||||
Sbjct: 717 gcgcgccggccgcc 730
>ISMex11
Length = 1227
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 245 acggccgccggctg 258
||||||||||||||
Sbjct: 734 acggccgccggctg 747
>ISMex39
Length = 2456
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 225 catcctcgcccggc 238
||||||||||||||
Sbjct: 1464 catcctcgcccggc 1477
>ISCARN21
Length = 1249
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 141 tgctggaggaactg 154
||||||||||||||
Sbjct: 137 tgctggaggaactg 150
>ISDds1
Length = 1248
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 192 cgccacccgcttgc 205
||||||||||||||
Sbjct: 606 cgccacccgcttgc 593
>ISSsp4
Length = 2558
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 223 cccatcctcgcccg 236
||||||||||||||
Sbjct: 1269 cccatcctcgcccg 1282
>ISMul1
Length = 1366
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 75 tcacgctgctgccg 88
||||||||||||||
Sbjct: 700 tcacgctgctgccg 713
>ISGNB1-1
Length = 1047
Score = 28.2 bits (14), Expect = 5.1
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 197 cccgcttgccggtggcgg 214
||||||||||| ||||||
Sbjct: 188 cccgcttgccgctggcgg 171
>ISBcen22
Length = 1202
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 203 tgccggtggcggat 216
||||||||||||||
Sbjct: 127 tgccggtggcggat 140
>ISRhosp4
Length = 1349
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 41 gtgtgcgccgtcgc 54
||||||||||||||
Sbjct: 820 gtgtgcgccgtcgc 807
>ISFal1
Length = 1736
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 248 gccgccggctggtc 261
||||||||||||||
Sbjct: 246 gccgccggctggtc 259
>ISGka2
Length = 1561
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 225 catcctcgcccggc 238
||||||||||||||
Sbjct: 767 catcctcgcccggc 754
>ISBcen20
Length = 914
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 79 gctgctgccgctga 92
||||||||||||||
Sbjct: 560 gctgctgccgctga 573
>ISMva1
Length = 1093
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 200 gcttgccggtggcg 213
||||||||||||||
Sbjct: 506 gcttgccggtggcg 493
>IS885
Length = 1100
Score = 28.2 bits (14), Expect = 5.1
Identities = 20/22 (90%)
Strand = Plus / Plus
Query: 156 tgtgaacaccgtcgctgatccg 177
|||| |||| ||||||||||||
Sbjct: 346 tgtggacactgtcgctgatccg 367
>IS2404
Length = 1279
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 75 tcacgctgctgccg 88
||||||||||||||
Sbjct: 563 tcacgctgctgccg 576
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_209_length_260_cov_0.781421_ID_5588
(260 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISMtsp5 | IS3 | IS2 | Methylobacterium sp. | 32 | 0.33 |
| ISAtu6 | IS66 | - | Agrobacterium tumefaciens | 32 | 0.33 |
| IS1513 | IS30 | - | Corynebacterium striatum | 32 | 0.33 |
| IS1131 | IS66 | - | Agrobacterium tumefaciens | 32 | 0.33 |
| ISNaoc4 | IS200/IS605 | IS1341 | Natronococcus occultus | 30 | 1.3 |
| ISSba19 | IS110 | IS1111 | Shewanella baltica | 30 | 1.3 |
| ISMyma1 | IS3 | IS407 | Mycobacterium marinum | 30 | 1.3 |
| ISHli2 | IS5 | ISH1 | Halohasta litchfieldiae | 28 | 5.1 |
| ISNpu16 | ISKra4 | ISMich2 | Nostoc punctiforme | 28 | 5.1 |
| ISKpn19 | ISKra4 | ISAzba1 | Klebsiella pneumoniae | 28 | 5.1 |
| ISNamo3 | IS66 | ISBst12 | Natronomonas moolapensis | 28 | 5.1 |
| ISMva4 | IS256 | Mycobacterium vanbaalenii | 28 | 5.1 | |
| ISPa43 | Tn3 | Pseudomonas aeruginosa | 28 | 5.1 | |
| ISHvo1 | IS5 | ISH1 | Haloferax volcanii | 28 | 5.1 |
| ISRgn2 | IS66 | Ruminococcus gnavus | 28 | 5.1 | |
| ISBce1 | IS1182 | Bacillus cereus | 28 | 5.1 | |
| ISCc5 | IS1182 | Caulobacter crescentus | 28 | 5.1 | |
| ISRce1 | ISAs1 | Rhodospirillum centenum | 28 | 5.1 | |
| ISCARN81 | IS3 | IS3 | Metagenomic data from CARNOULES | 28 | 5.1 |
| IS931 | IS256 | - | Burkholderia cepacia | 28 | 5.1 |
>ISMtsp5
Length = 1347
Score = 32.2 bits (16), Expect = 0.33
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 35 ccggatgcggcgctgc 50
||||||||||||||||
Sbjct: 570 ccggatgcggcgctgc 585
>ISAtu6
Length = 2798
Score = 32.2 bits (16), Expect = 0.33
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 188 gttttcccggagcgca 203
||||||||||||||||
Sbjct: 1152 gttttcccggagcgca 1137
>IS1513
Length = 1705
Score = 32.2 bits (16), Expect = 0.33
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 142 acacgccagcgtttcg 157
||||||||||||||||
Sbjct: 1157 acacgccagcgtttcg 1142
>IS1131
Length = 2773
Score = 32.2 bits (16), Expect = 0.33
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 188 gttttcccggagcgca 203
||||||||||||||||
Sbjct: 1149 gttttcccggagcgca 1134
>ISNaoc4
Length = 1568
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 143 cacgccagcgtttcg 157
|||||||||||||||
Sbjct: 271 cacgccagcgtttcg 257
>ISSba19
Length = 1373
Score = 30.2 bits (15), Expect = 1.3
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 169 cgtcatgggccgcgataac 187
||||||| |||||||||||
Sbjct: 1084 cgtcatgcgccgcgataac 1066
>ISMyma1
Length = 1240
Score = 30.2 bits (15), Expect = 1.3
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 44 gcgctgccggagatcgccc 62
||||||| |||||||||||
Sbjct: 330 gcgctgcgggagatcgccc 348
>ISHli2
Length = 937
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 52 ggagatcgccctct 65
||||||||||||||
Sbjct: 309 ggagatcgccctct 296
>ISNpu16
Length = 1173
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 20 agccgttttaaaga 33
||||||||||||||
Sbjct: 841 agccgttttaaaga 828
>ISKpn19
Length = 2851
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 236 ccggcgctgaacgt 249
||||||||||||||
Sbjct: 1121 ccggcgctgaacgt 1108
>ISNamo3
Length = 1546
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 195 cggagcgcattttc 208
||||||||||||||
Sbjct: 1339 cggagcgcattttc 1326
>ISMva4
Length = 1458
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 38 gatgcggcgctgcc 51
||||||||||||||
Sbjct: 425 gatgcggcgctgcc 412
>ISPa43
Length = 19903
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 235 tccggcgctgaacg 248
||||||||||||||
Sbjct: 6988 tccggcgctgaacg 6975
>ISHvo1
Length = 938
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 52 ggagatcgccctct 65
||||||||||||||
Sbjct: 310 ggagatcgccctct 297
>ISRgn2
Length = 2745
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 74 ggcaagctgttcca 87
||||||||||||||
Sbjct: 2628 ggcaagctgttcca 2615
>ISBce1
Length = 1803
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 83 ttccagtcgatttt 96
||||||||||||||
Sbjct: 1610 ttccagtcgatttt 1597
>ISCc5
Length = 1577
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 124 ggcgtcaggcctgg 137
||||||||||||||
Sbjct: 1512 ggcgtcaggcctgg 1499
>ISRce1
Length = 1267
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 45 cgctgccggagatc 58
||||||||||||||
Sbjct: 192 cgctgccggagatc 205
>ISCARN81
Length = 1406
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 37 ggatgcggcgctgc 50
||||||||||||||
Sbjct: 503 ggatgcggcgctgc 516
>IS931
Length = 1477
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 176 ggccgcgataacgt 189
||||||||||||||
Sbjct: 746 ggccgcgataacgt 733
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_210_length_260_cov_0.797814_ID_5590
(260 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISMex40 | IS5 | IS1031 | Methylobacterium extorquens | 36 | 0.021 |
| ISHla20 | IS200/IS605 | IS1341 | Halorubrum lacusprofundi | 32 | 0.33 |
| ISMrh1 | IS256 | Mycobacterium rhodesiae | 32 | 0.33 | |
| ISRer3 | IS256 | Rhodococcus erythropolis | 32 | 0.33 | |
| ISAnsp3 | IS66 | Anaeromyxobacter sp. | 32 | 0.33 | |
| ISGsu5 | IS110 | Geobacter sulfurreducens | 32 | 0.33 | |
| IS1166 | IS256 | - | Rhodococcus sp. | 32 | 0.33 |
| ISAmi2 | IS5 | ISL2 | Actinosynnema mirum | 30 | 1.3 |
| ISApr12 | IS5 | Alpha proteobacterium | 30 | 1.3 | |
| ISPfr15 | IS481 | Propionibacterium freudenreichii | 30 | 1.3 | |
| ISMav8 | IS1380 | Mycobacterium avium | 30 | 1.3 | |
| ISMdi17 | IS5 | IS1031 | Methylobacterium dichloromethanicum | 30 | 1.3 |
| ISThsp9 | Tn3 | Thiomonas sp. | 30 | 1.3 | |
| ISHar6 | IS110 | IS1111 | Herminiimonas arsenicoxydans | 30 | 1.3 |
| ISRpa1 | IS1595 | ISNwi1 | Rhodopseudomonas palustris | 30 | 1.3 |
| ISAni1 | IS481 | - | Arthrobacter nicotinovorans | 30 | 1.3 |
| IS1000B | IS110 | - | Thermus thermophilus | 30 | 1.3 |
| IS1000A | IS110 | - | Thermus thermophilus | 30 | 1.3 |
| ISHti1 | IS200/IS605 | IS605 | Halorhabdus tiamatea | 28 | 5.1 |
| ISSiac5 | ISLre2 | Singulisphaera acidiphila | 28 | 5.1 | |
| ISMal1 | ISKra4 | ISAzba1 | Mesorhizobium alhagi | 28 | 5.1 |
| ISMtu1 | IS256 | Mycobacterium tusciae | 28 | 5.1 | |
| ISPpa7 | IS66 | Paracoccus pantotrophus | 28 | 5.1 | |
| ISMtsp19 | IS701 | Methylobacterium sp. | 28 | 5.1 | |
| ISAar36 | IS21 | Arthrobacter arilaitensis | 28 | 5.1 | |
| ISMsi5 | IS3 | IS3 | Methylocella silvestris | 28 | 5.1 |
| ISMdi8 | IS481 | Methylobacterium dichloromethanicum | 28 | 5.1 | |
| ISSav5 | IS481 | Streptomyces avermitilis | 28 | 5.1 | |
| ISRm32 | IS1595 | ISNwi1 | Sinorhizobium meliloti | 28 | 5.1 |
| ISSsp4 | IS21 | Sphingomonas sp. | 28 | 5.1 | |
| ISPst3 | IS21 | Pseudomonas stutzeri | 28 | 5.1 | |
| ISXau1 | IS3 | IS407 | Xanthobacter autotrophicus | 28 | 5.1 |
| ISAusp1 | IS1595 | ISNha5 | Aurantimonas sp. | 28 | 5.1 |
| ISAzo4 | IS21 | Azoarcus sp. | 28 | 5.1 | |
| ISRso8 | IS3 | - | Ralstonia solanacearum | 28 | 5.1 |
>ISMex40
Length = 918
Score = 36.2 bits (18), Expect = 0.021
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 142 cgagcatcaccgtcgcga 159
||||||||||||||||||
Sbjct: 691 cgagcatcaccgtcgcga 708
>ISHla20
Length = 1529
Score = 32.2 bits (16), Expect = 0.33
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 43 cggcggcgaagtggctgatc 62
|||||||||||| |||||||
Sbjct: 807 cggcggcgaagttgctgatc 788
>ISMrh1
Length = 1472
Score = 32.2 bits (16), Expect = 0.33
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 154 tcgcgacctgggtcttgtcg 173
|||||||||||| |||||||
Sbjct: 1053 tcgcgacctgggccttgtcg 1034
>ISRer3
Length = 1471
Score = 32.2 bits (16), Expect = 0.33
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 154 tcgcgacctgggtcttgtcg 173
|||||||||||| |||||||
Sbjct: 1052 tcgcgacctgggccttgtcg 1033
>ISAnsp3
Length = 2518
Score = 32.2 bits (16), Expect = 0.33
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 37 ggcggtcggcggcgaa 52
||||||||||||||||
Sbjct: 2418 ggcggtcggcggcgaa 2433
>ISGsu5
Length = 1400
Score = 32.2 bits (16), Expect = 0.33
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 145 gcatcaccgtcgcgacctgg 164
|||||||| |||||||||||
Sbjct: 1187 gcatcaccttcgcgacctgg 1168
>IS1166
Length = 1469
Score = 32.2 bits (16), Expect = 0.33
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 154 tcgcgacctgggtcttgtcg 173
|||||||||||| |||||||
Sbjct: 1051 tcgcgacctgggccttgtcg 1032
>ISAmi2
Length = 942
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 37 ggcggtcggcggcga 51
|||||||||||||||
Sbjct: 508 ggcggtcggcggcga 494
>ISApr12
Length = 1524
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 33 ggcaggcggtcggcg 47
|||||||||||||||
Sbjct: 960 ggcaggcggtcggcg 974
>ISPfr15
Length = 1097
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 234 atcttggcgtcgtcg 248
|||||||||||||||
Sbjct: 870 atcttggcgtcgtcg 856
>ISMav8
Length = 2064
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 59 gatcagcaccaccgg 73
|||||||||||||||
Sbjct: 735 gatcagcaccaccgg 749
>ISMdi17
Length = 888
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 188 gaagaaggcgatcgt 202
|||||||||||||||
Sbjct: 828 gaagaaggcgatcgt 814
>ISThsp9
Length = 6215
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 83 cagcagcatgccgac 97
|||||||||||||||
Sbjct: 5965 cagcagcatgccgac 5951
>ISHar6
Length = 1359
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 170 gtcgcccatctcggc 184
|||||||||||||||
Sbjct: 768 gtcgcccatctcggc 754
>ISRpa1
Length = 2091
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 175 ccatctcggcaatga 189
|||||||||||||||
Sbjct: 1941 ccatctcggcaatga 1955
>ISAni1
Length = 1075
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 103 tgccgaggatgacca 117
|||||||||||||||
Sbjct: 657 tgccgaggatgacca 671
>IS1000B
Length = 1196
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 129 ggatactgtgcggcg 143
|||||||||||||||
Sbjct: 113 ggatactgtgcggcg 99
>IS1000A
Length = 1196
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 129 ggatactgtgcggcg 143
|||||||||||||||
Sbjct: 113 ggatactgtgcggcg 99
>ISHti1
Length = 2131
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 92 gccgaccgtggtgc 105
||||||||||||||
Sbjct: 1786 gccgaccgtggtgc 1799
>ISSiac5
Length = 1429
Score = 28.2 bits (14), Expect = 5.1
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 34 gcaggcggtcggcggcga 51
|||||||||||| |||||
Sbjct: 545 gcaggcggtcggaggcga 528
>ISMal1
Length = 2308
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 243 tcgtcgtcatccag 256
||||||||||||||
Sbjct: 646 tcgtcgtcatccag 633
>ISMtu1
Length = 1474
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 42 tcggcggcgaagtg 55
||||||||||||||
Sbjct: 473 tcggcggcgaagtg 460
>ISPpa7
Length = 2731
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 94 cgaccgtggtgccg 107
||||||||||||||
Sbjct: 333 cgaccgtggtgccg 346
>ISMtsp19
Length = 1486
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 6 gcggcgacccggcg 19
||||||||||||||
Sbjct: 170 gcggcgacccggcg 157
>ISAar36
Length = 2571
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 170 gtcgcccatctcgg 183
||||||||||||||
Sbjct: 1219 gtcgcccatctcgg 1232
>ISMsi5
Length = 1228
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 6 gcggcgacccggcg 19
||||||||||||||
Sbjct: 885 gcggcgacccggcg 898
>ISMdi8
Length = 1002
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 195 gcgatcgttgtcgc 208
||||||||||||||
Sbjct: 264 gcgatcgttgtcgc 277
>ISSav5
Length = 1953
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 38 gcggtcggcggcga 51
||||||||||||||
Sbjct: 510 gcggtcggcggcga 523
>ISRm32
Length = 1190
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 85 gcagcatgccgacc 98
||||||||||||||
Sbjct: 948 gcagcatgccgacc 961
>ISSsp4
Length = 2558
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 233 catcttggcgtcgt 246
||||||||||||||
Sbjct: 2259 catcttggcgtcgt 2246
>ISPst3
Length = 2606
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 106 cgaggatgaccaga 119
||||||||||||||
Sbjct: 2100 cgaggatgaccaga 2087
>ISXau1
Length = 1272
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 169 tgtcgcccatctcg 182
||||||||||||||
Sbjct: 354 tgtcgcccatctcg 367
>ISAusp1
Length = 3418
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 200 cgttgtcgcgacga 213
||||||||||||||
Sbjct: 1931 cgttgtcgcgacga 1918
>ISAzo4
Length = 2757
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 3 gccgcggcgacccg 16
||||||||||||||
Sbjct: 1624 gccgcggcgacccg 1637
>ISRso8
Length = 1287
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 22 tcagcgtcaacggc 35
||||||||||||||
Sbjct: 860 tcagcgtcaacggc 847
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_211_length_260_cov_0.797814_ID_5592
(260 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISMno13 | IS66 | Methylobacterium nodulans | 32 | 0.33 | |
| TnAs3 | Tn3 | Aeromonas salmonicida | 30 | 1.3 | |
| ISSer2 | IS256 | Saccharopolyspora erythraea | 30 | 1.3 | |
| ISPebe1 | IS256 | Pelagibaca bermudensis | 30 | 1.3 | |
| ISPa38 | Tn3 | Pseudomonas aeruginosa | 30 | 1.3 | |
| ISAmi2 | IS5 | ISL2 | Actinosynnema mirum | 30 | 1.3 |
| ISVbsp2 | IS5 | IS5 | Vibrio sp. | 30 | 1.3 |
| ISCARN99 | IS21 | Metagenomic data from CARNOULES | 30 | 1.3 | |
| ISOba3 | IS1 | ISMhu11 | Oceanicola batsensis | 30 | 1.3 |
| ISBcen19 | IS66 | Burkholderia cenocepacia | 30 | 1.3 | |
| ISH5 | IS4 | ISH8 | Halobacterium sp. | 30 | 1.3 |
| IS651 | ISL3 | - | Bacillus halodurans | 30 | 1.3 |
| IS1535 | IS607 | Mycobacterium tuberculosis | 30 | 1.3 | |
| ISAeme17 | IS21 | Aeromonas media | 28 | 5.1 | |
| ISBj11 | IS21 | Bradyrhizobium japonicum | 28 | 5.1 | |
| ISH32 | IS4 | ISH8 | Halobacterium salinarum | 28 | 5.1 |
| ISBdo1 | IS1182 | Burkholderia dolosa | 28 | 5.1 | |
| ISHla3 | IS5 | ISH1 | Halorubrum lacusprofundi | 28 | 5.1 |
| ISRhru6 | IS5 | IS1031 | Rhodospirillum rubrum | 28 | 5.1 |
| ISMno32 | IS1182 | Methylobacterium nodulans | 28 | 5.1 | |
| ISMno8 | IS1182 | Methylobacterium nodulans | 28 | 5.1 | |
| ISPfr9 | IS30 | Propionibacterium freudenreichii | 28 | 5.1 | |
| ISArsp3 | IS110 | Arthrobacter sp. | 28 | 5.1 | |
| ISAar30 | ISL3 | Arthrobacter arilaitensis | 28 | 5.1 | |
| ISBps2 | IS3 | IS3 | Burkholderia pseudomallei | 28 | 5.1 |
| ISMdi7 | IS21 | Methylobacterium dichloromethanicum | 28 | 5.1 | |
| ISAnsp4 | IS21 | Anaeromyxobacter sp. | 28 | 5.1 | |
| ISFsp11 | IS66 | ISBst12 | Frankia sp. | 28 | 5.1 |
| ISXoo13 | ISL3 | Xanthomonas oryzae | 28 | 5.1 | |
| ISStac1 | IS110 | IS1111 | Streptomyces aculeolatus | 28 | 5.1 |
| ISCro3 | IS4 | Citrobacter rodentium | 28 | 5.1 | |
| ISOba1 | IS3 | IS407 | Oceanicola batsensis | 28 | 5.1 |
| ISEc17 | IS3 | IS3 | Escherichia coli | 28 | 5.1 |
| ISRba2 | IS4 | IS50 | Rhodopirellula baltica | 28 | 5.1 |
| ISNph4 | IS5 | ISH1 | Natronomonas pharaonis | 28 | 5.1 |
| ISA1214-6 | ISNCY | ISA1214 | Archaeoglobus fulgidus | 28 | 5.1 |
| IS3H | IS3 | IS3 | Shigella dysenteriae | 28 | 5.1 |
| IS3F | IS3 | IS3 | Escherichia fergusonii | 28 | 5.1 |
| IS3 | IS3 | IS3 | Escherichia coli | 28 | 5.1 |
| IS1096 | ISL3 | - | Mycobacterium smegmatis | 28 | 5.1 |
| IS1081 | IS256 | - | Mycobacterium bovis | 28 | 5.1 |
>ISMno13
Length = 2459
Score = 32.2 bits (16), Expect = 0.33
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 102 cggccgacccaatccg 117
||||||||||||||||
Sbjct: 1566 cggccgacccaatccg 1551
>TnAs3
Length = 18735
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 92 cccgctgcgccggcc 106
|||||||||||||||
Sbjct: 7146 cccgctgcgccggcc 7160
>ISSer2
Length = 1473
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 126 gccttcgaccagacg 140
|||||||||||||||
Sbjct: 1353 gccttcgaccagacg 1339
>ISPebe1
Length = 1363
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 179 cgtcgatctcctcgc 193
|||||||||||||||
Sbjct: 517 cgtcgatctcctcgc 503
>ISPa38
Length = 6455
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 130 tcgaccagacgctgc 144
|||||||||||||||
Sbjct: 1590 tcgaccagacgctgc 1604
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 16 aaggcgttcgcggc 29
||||||||||||||
Sbjct: 6265 aaggcgttcgcggc 6252
>ISAmi2
Length = 942
Score = 30.2 bits (15), Expect = 1.3
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 91 ccccgctgcgccggccgac 109
|||||| ||||||||||||
Sbjct: 865 ccccgccgcgccggccgac 883
>ISVbsp2
Length = 1489
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 118 ttgatgaggccttcg 132
|||||||||||||||
Sbjct: 231 ttgatgaggccttcg 245
>ISCARN99
Length = 2192
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 68 cagcggcctcatttc 82
|||||||||||||||
Sbjct: 1335 cagcggcctcatttc 1321
>ISOba3
Length = 2598
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 4 cccgcgccgaagaag 18
|||||||||||||||
Sbjct: 1940 cccgcgccgaagaag 1954
>ISBcen19
Length = 2450
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 94 cgctgcgccggccga 108
|||||||||||||||
Sbjct: 1057 cgctgcgccggccga 1043
>ISH5
Length = 1442
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 176 ggacgtcgatctcct 190
|||||||||||||||
Sbjct: 854 ggacgtcgatctcct 840
>IS651
Length = 1384
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 17 aggcgttcgcggcat 31
|||||||||||||||
Sbjct: 226 aggcgttcgcggcat 212
>IS1535
Length = 2300
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 61 tggcccgcagcggcc 75
|||||||||||||||
Sbjct: 1333 tggcccgcagcggcc 1319
>ISAeme17
Length = 1941
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 135 cagacgctgcgctt 148
||||||||||||||
Sbjct: 1133 cagacgctgcgctt 1146
>ISBj11
Length = 2649
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 180 gtcgatctcctcgc 193
||||||||||||||
Sbjct: 1493 gtcgatctcctcgc 1506
>ISH32
Length = 1625
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 240 gtcttgctcgatct 253
||||||||||||||
Sbjct: 647 gtcttgctcgatct 660
>ISBdo1
Length = 1572
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 134 ccagacgctgcgct 147
||||||||||||||
Sbjct: 1043 ccagacgctgcgct 1056
>ISHla3
Length = 929
Score = 28.2 bits (14), Expect = 5.1
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 175 tggacgtcgatctcctcg 192
|||| |||||||||||||
Sbjct: 77 tggaagtcgatctcctcg 94
>ISRhru6
Length = 941
Score = 28.2 bits (14), Expect = 5.1
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 87 gccgccccgctgcgccgg 104
||||||||||| ||||||
Sbjct: 199 gccgccccgcttcgccgg 182
>ISMno32
Length = 1538
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 244 tgctcgatctgtcc 257
||||||||||||||
Sbjct: 185 tgctcgatctgtcc 198
>ISMno8
Length = 1466
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 159 atcctgcccacccg 172
||||||||||||||
Sbjct: 867 atcctgcccacccg 880
>ISPfr9
Length = 1484
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 124 aggccttcgaccag 137
||||||||||||||
Sbjct: 686 aggccttcgaccag 673
>ISArsp3
Length = 1596
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 30 atcttcatcgccga 43
||||||||||||||
Sbjct: 1103 atcttcatcgccga 1116
>ISAar30
Length = 1435
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 11 cgaagaaggcgttc 24
||||||||||||||
Sbjct: 741 cgaagaaggcgttc 754
>ISBps2
Length = 1233
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 219 agcacgcagcagct 232
||||||||||||||
Sbjct: 424 agcacgcagcagct 437
>ISMdi7
Length = 2568
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 8 cgccgaagaaggcg 21
||||||||||||||
Sbjct: 660 cgccgaagaaggcg 647
>ISAnsp4
Length = 2195
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 83 cgtcgccgccccgc 96
||||||||||||||
Sbjct: 433 cgtcgccgccccgc 420
>ISFsp11
Length = 1836
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 162 ctgcccacccggct 175
||||||||||||||
Sbjct: 501 ctgcccacccggct 488
>ISXoo13
Length = 1312
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 94 cgctgcgccggccg 107
||||||||||||||
Sbjct: 911 cgctgcgccggccg 898
>ISStac1
Length = 1484
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 146 cttctacgaaccca 159
||||||||||||||
Sbjct: 1437 cttctacgaaccca 1450
>ISCro3
Length = 1430
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 59 gctggcccgcagcg 72
||||||||||||||
Sbjct: 350 gctggcccgcagcg 363
>ISOba1
Length = 1271
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 88 ccgccccgctgcgc 101
||||||||||||||
Sbjct: 1154 ccgccccgctgcgc 1167
>ISEc17
Length = 1258
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 61 tggcccgcagcggc 74
||||||||||||||
Sbjct: 432 tggcccgcagcggc 445
>ISRba2
Length = 1365
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 50 cggccaggagctgg 63
||||||||||||||
Sbjct: 1041 cggccaggagctgg 1054
>ISNph4
Length = 929
Score = 28.2 bits (14), Expect = 5.1
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 175 tggacgtcgatctcctcg 192
|||| |||||||||||||
Sbjct: 77 tggaagtcgatctcctcg 94
>ISA1214-6
Length = 1213
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 28 gcatcttcatcgcc 41
||||||||||||||
Sbjct: 852 gcatcttcatcgcc 839
>IS3H
Length = 1261
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 61 tggcccgcagcggc 74
||||||||||||||
Sbjct: 432 tggcccgcagcggc 445
>IS3F
Length = 1258
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 61 tggcccgcagcggc 74
||||||||||||||
Sbjct: 432 tggcccgcagcggc 445
>IS3
Length = 1258
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 61 tggcccgcagcggc 74
||||||||||||||
Sbjct: 432 tggcccgcagcggc 445
>IS1096
Length = 2259
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 13 aagaaggcgttcgc 26
||||||||||||||
Sbjct: 745 aagaaggcgttcgc 758
>IS1081
Length = 1435
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 63 gcccgcagcggcct 76
||||||||||||||
Sbjct: 863 gcccgcagcggcct 876
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_212_length_260_cov_1.19672_ID_5594
(260 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISGvi2 | IS4 | IS50 | Gloeobacter violaceus | 34 | 0.083 |
| ISMno24 | IS91 | Methylobacterium nodulans | 32 | 0.33 | |
| ISHarch15 | IS200/IS605 | IS605 | Halophilic archaeon | 32 | 0.33 |
| ISHhu7 | IS200/IS605 | IS1341 | Halobacterium hubeiense | 32 | 0.33 |
| ISMav9 | ISNCY | ISDol1 | Mycobacterium avium | 30 | 1.3 |
| ISRxy1 | IS1182 | Rubrobacter xylanophilus | 30 | 1.3 | |
| ISAisp4 | IS110 | Acidovorax sp. | 30 | 1.3 | |
| ISHar7 | IS3 | IS51 | Herminiimonas arsenicoxydans | 30 | 1.3 |
| IS110 | IS110 | - | Streptomyces coelicolor | 30 | 1.3 |
| ISAve2 | IS5 | IS903 | Aeromonas veronii | 28 | 5.1 |
| ISHala4 | IS701 | Halobiforma lacisalsi | 28 | 5.1 | |
| ISHti12 | IS701 | Halorhabdus tiamatea | 28 | 5.1 | |
| ISNaoc2 | IS200/IS605 | IS1341 | Natronococcus occultus | 28 | 5.1 |
| ISAs15 | IS5 | IS903 | Aeromonas salmonicida | 28 | 5.1 |
| ISHli6 | IS1595 | ISH4 | Halohasta litchfieldiae | 28 | 5.1 |
| ISHvo10 | IS110 | IS1111 | Haloferax volcanii | 28 | 5.1 |
| ISHvo9 | IS110 | IS1111 | Haloferax volcanii | 28 | 5.1 |
| ISMtu1 | IS256 | Mycobacterium tusciae | 28 | 5.1 | |
| ISAzs2 | IS21 | Azospirillum sp. | 28 | 5.1 | |
| ISRel24 | IS66 | Rhizobium etli | 28 | 5.1 | |
| ISStsp4 | IS5 | ISL2 | Streptomyces sp. | 28 | 5.1 |
| ISGau8 | IS30 | Gemmatimonas aurantiaca | 28 | 5.1 | |
| ISRjo3 | ISNCY | ISDol1 | Rhodococcus jostii | 28 | 5.1 |
| ISScl2 | ISAzo13 | Streptomyces clavuligerus | 28 | 5.1 | |
| ISAzba1 | ISKra4 | ISAzba1 | Azospirillum brasilense | 28 | 5.1 |
| ISVch8 | IS5 | IS903 | Vibrio cholerae | 28 | 5.1 |
| ISMex22 | Tn3 | Methylobacterium extorquens | 28 | 5.1 | |
| ISAzo38 | IS5 | IS427 | Azoarcus sp. | 28 | 5.1 |
| ISAzo31 | IS5 | IS5 | Azoarcus sp. | 28 | 5.1 |
| ISCARN70 | IS4 | IS4Sa | Metagenomic data from CARNOULES | 28 | 5.1 |
| ISAli10 | IS66 | Azospirillum lipoferum | 28 | 5.1 | |
| ISCro4 | IS110 | Citrobacter rodentium | 28 | 5.1 | |
| ISGur11 | IS481 | Geobacter uraniumreducens | 28 | 5.1 | |
| ISEli1 | IS3 | IS407 | Erythrobacter litoralis | 28 | 5.1 |
| ISLxx3 | IS21 | Leifsonia xyli | 28 | 5.1 | |
| ISXc4 | Tn3 | - | Xanthomonas campestris | 28 | 5.1 |
| ISRm4-3 | IS5 | IS1031 | Sinorhizobium meliloti | 28 | 5.1 |
| ISRm4-1 | IS5 | IS1031 | Rhizobium meliloti | 28 | 5.1 |
| ISRm4 | IS5 | IS1031 | Rhizobium meliloti | 28 | 5.1 |
| ISPa42 | Tn3 | Pseudomonas aeruginosa | 28 | 5.1 | |
| IS4811 | IS5 | IS1031 | Streptomyces lividans | 28 | 5.1 |
| IS1512 | IS256 | - | Mycobacterium gordonae | 28 | 5.1 |
>ISGvi2
Length = 1487
Score = 34.2 bits (17), Expect = 0.083
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 119 gcgggcggcgcgccagg 135
|||||||||||||||||
Sbjct: 821 gcgggcggcgcgccagg 837
>ISMno24
Length = 2157
Score = 32.2 bits (16), Expect = 0.33
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 230 gatgtcggtcttgcgc 245
||||||||||||||||
Sbjct: 1380 gatgtcggtcttgcgc 1395
>ISHarch15
Length = 1988
Score = 32.2 bits (16), Expect = 0.33
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 137 gacgagggcgtagcga 152
||||||||||||||||
Sbjct: 1494 gacgagggcgtagcga 1509
>ISHhu7
Length = 1477
Score = 32.2 bits (16), Expect = 0.33
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 71 gtaggcgagggcggcg 86
||||||||||||||||
Sbjct: 783 gtaggcgagggcggcg 768
>ISMav9
Length = 1572
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 13 tgaggccggccaccg 27
|||||||||||||||
Sbjct: 462 tgaggccggccaccg 448
>ISRxy1
Length = 1790
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 243 cgcggacgcggatcg 257
|||||||||||||||
Sbjct: 733 cgcggacgcggatcg 747
>ISAisp4
Length = 1614
Score = 30.2 bits (15), Expect = 1.3
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 226 cggcgatgtcggtcttgcg 244
|||| ||||||||||||||
Sbjct: 616 cggccatgtcggtcttgcg 598
>ISHar7
Length = 982
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 74 ggcgagggcggcggc 88
|||||||||||||||
Sbjct: 647 ggcgagggcggcggc 633
>IS110
Length = 1558
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 97 cgcagcggtcatcgc 111
|||||||||||||||
Sbjct: 591 cgcagcggtcatcgc 605
>ISAve2
Length = 1062
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 25 ccgagacggcgatg 38
||||||||||||||
Sbjct: 855 ccgagacggcgatg 868
>ISHala4
Length = 1280
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 31 cggcgatgaccagc 44
||||||||||||||
Sbjct: 845 cggcgatgaccagc 832
>ISHti12
Length = 1277
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 31 cggcgatgaccagc 44
||||||||||||||
Sbjct: 845 cggcgatgaccagc 832
>ISNaoc2
Length = 1458
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 26 cgagacggcgatga 39
||||||||||||||
Sbjct: 1235 cgagacggcgatga 1248
>ISAs15
Length = 1062
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 25 ccgagacggcgatg 38
||||||||||||||
Sbjct: 855 ccgagacggcgatg 868
>ISHli6
Length = 1046
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 168 gtcgtcacggcgat 181
||||||||||||||
Sbjct: 614 gtcgtcacggcgat 627
>ISHvo10
Length = 1462
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 60 aacgcggagtagta 73
||||||||||||||
Sbjct: 889 aacgcggagtagta 876
>ISHvo9
Length = 1462
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 60 aacgcggagtagta 73
||||||||||||||
Sbjct: 889 aacgcggagtagta 876
>ISMtu1
Length = 1474
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 32 ggcgatgaccagca 45
||||||||||||||
Sbjct: 198 ggcgatgaccagca 211
>ISAzs2
Length = 2609
Score = 28.2 bits (14), Expect = 5.1
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 80 ggcggcggcgtaggtggc 97
|||| |||||||||||||
Sbjct: 2355 ggcgtcggcgtaggtggc 2338
>ISRel24
Length = 2837
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 119 gcgggcggcgcgcc 132
||||||||||||||
Sbjct: 1732 gcgggcggcgcgcc 1745
>ISStsp4
Length = 902
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 118 tgcgggcggcgcgc 131
||||||||||||||
Sbjct: 583 tgcgggcggcgcgc 596
>ISGau8
Length = 1364
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 224 cgcggcgatgtcgg 237
||||||||||||||
Sbjct: 469 cgcggcgatgtcgg 456
>ISRjo3
Length = 1638
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 246 ggacgcggatcggg 259
||||||||||||||
Sbjct: 1543 ggacgcggatcggg 1556
>ISScl2
Length = 1819
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 86 ggcgtaggtggcgc 99
||||||||||||||
Sbjct: 1196 ggcgtaggtggcgc 1183
>ISAzba1
Length = 1465
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 79 gggcggcggcgtag 92
||||||||||||||
Sbjct: 1225 gggcggcggcgtag 1212
>ISVch8
Length = 1053
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 25 ccgagacggcgatg 38
||||||||||||||
Sbjct: 848 ccgagacggcgatg 861
>ISMex22
Length = 3864
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 219 cgttgcgcggcgat 232
||||||||||||||
Sbjct: 1187 cgttgcgcggcgat 1200
>ISAzo38
Length = 894
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 103 ggtcatcgccccat 116
||||||||||||||
Sbjct: 403 ggtcatcgccccat 390
>ISAzo31
Length = 1324
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 227 ggcgatgtcggtct 240
||||||||||||||
Sbjct: 442 ggcgatgtcggtct 429
>ISCARN70
Length = 1312
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 24 accgagacggcgat 37
||||||||||||||
Sbjct: 1118 accgagacggcgat 1105
>ISAli10
Length = 2584
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 224 cgcggcgatgtcgg 237
||||||||||||||
Sbjct: 2011 cgcggcgatgtcgg 1998
>ISCro4
Length = 1295
Score = 28.2 bits (14), Expect = 5.1
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 94 tggcgcagcggtcatcgc 111
|||| |||||||||||||
Sbjct: 341 tggctcagcggtcatcgc 358
>ISGur11
Length = 1837
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 112 cccatttgcgggcg 125
||||||||||||||
Sbjct: 358 cccatttgcgggcg 345
>ISEli1
Length = 1270
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 141 agggcgtagcgaag 154
||||||||||||||
Sbjct: 1172 agggcgtagcgaag 1159
>ISLxx3
Length = 2637
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 233 gtcggtcttgcgcg 246
||||||||||||||
Sbjct: 1417 gtcggtcttgcgcg 1404
>ISXc4
Length = 6938
Score = 28.2 bits (14), Expect = 5.1
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 216 ccgcgttgcgcggcgatg 233
|||| |||||||||||||
Sbjct: 1258 ccgccttgcgcggcgatg 1241
>ISRm4-3
Length = 934
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 234 tcggtcttgcgcgg 247
||||||||||||||
Sbjct: 220 tcggtcttgcgcgg 207
>ISRm4-1
Length = 937
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 237 gtcttgcgcggacg 250
||||||||||||||
Sbjct: 217 gtcttgcgcggacg 204
>ISRm4
Length = 933
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 234 tcggtcttgcgcgg 247
||||||||||||||
Sbjct: 220 tcggtcttgcgcgg 207
>ISPa42
Length = 16941
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 187 attgcggatgcgtg 200
||||||||||||||
Sbjct: 2485 attgcggatgcgtg 2472
>IS4811
Length = 5396
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 19 cggccaccgagacg 32
||||||||||||||
Sbjct: 812 cggccaccgagacg 799
>IS1512
Length = 1314
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 98 gcagcggtcatcgc 111
||||||||||||||
Sbjct: 64 gcagcggtcatcgc 51
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_213_length_260_cov_0.743169_ID_5596
(260 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISRme4 | IS21 | Cupriavidus metallidurans | 36 | 0.021 | |
| ISNpe6 | IS1595 | ISH4 | Natrinema pellirubrum | 30 | 1.3 |
| ISMno36 | IS6 | Methylobacterium nodulans | 30 | 1.3 | |
| ISMno35 | IS6 | Methylobacterium nodulans | 30 | 1.3 | |
| ISCARN1 | IS607 | Metagenomic data from CARNOULES | 30 | 1.3 | |
| ISMyma1 | IS3 | IS407 | Mycobacterium marinum | 30 | 1.3 |
| ISHma4 | IS1595 | ISH4 | Haloarcula marismortui | 30 | 1.3 |
| IS1600 | IS21 | - | Ralstonia eutropha | 30 | 1.3 |
| ISMno25 | IS110 | IS1111 | Methylobacterium nodulans | 28 | 5.1 |
| ISNma11 | IS200/IS605 | IS1341 | Natrialba magadii | 28 | 5.1 |
| ISSer2 | IS256 | Saccharopolyspora erythraea | 28 | 5.1 | |
| ISAzs37 | IS630 | Azospirillum sp. | 28 | 5.1 | |
| ISAzs2 | IS21 | Azospirillum sp. | 28 | 5.1 | |
| ISPse1 | IS1182 | Paracoccus seriniphilus | 28 | 5.1 | |
| ISMlo5 | ISNCY | ISDol1 | Mesorhizobium loti | 28 | 5.1 |
| ISPfr3 | ISL3 | Propionibacterium freudenreichii | 28 | 5.1 | |
| ISDds7 | IS4 | IS10 | Deinococcus deserti | 28 | 5.1 |
| ISGob2 | IS66 | ISBst12 | Gemmata obscuriglobus | 28 | 5.1 |
| ISAzvi12 | IS110 | IS1111 | Azotobacter vinelandii | 28 | 5.1 |
| ISAzvi8 | IS701 | Azotobacter vinelandii | 28 | 5.1 | |
| ISPa20 | IS3 | IS3 | Pseudomonas aeruginosa | 28 | 5.1 |
| ISGsu4 | IS110 | Geobacter sulfurreducens | 28 | 5.1 |
>ISRme4
Length = 2469
Score = 36.2 bits (18), Expect = 0.021
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 67 cgccggcgagcgcaccaa 84
||||||||||||||||||
Sbjct: 542 cgccggcgagcgcaccaa 559
>ISNpe6
Length = 1004
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 6 tggcggtcggccagc 20
|||||||||||||||
Sbjct: 681 tggcggtcggccagc 667
>ISMno36
Length = 888
Score = 30.2 bits (15), Expect = 1.3
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 112 gggcgggtgcatcggcgag 130
|||||||||||| ||||||
Sbjct: 295 gggcgggtgcataggcgag 277
>ISMno35
Length = 894
Score = 30.2 bits (15), Expect = 1.3
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 112 gggcgggtgcatcggcgag 130
|||||||||||| ||||||
Sbjct: 301 gggcgggtgcataggcgag 283
>ISCARN1
Length = 2232
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 225 aagtggtcaatctgg 239
|||||||||||||||
Sbjct: 511 aagtggtcaatctgg 525
>ISMyma1
Length = 1240
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 115 cgggtgcatcggcga 129
|||||||||||||||
Sbjct: 719 cgggtgcatcggcga 705
>ISHma4
Length = 1001
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 6 tggcggtcggccagc 20
|||||||||||||||
Sbjct: 680 tggcggtcggccagc 666
>IS1600
Length = 2520
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 70 cggcgagcgcaccaa 84
|||||||||||||||
Sbjct: 546 cggcgagcgcaccaa 560
>ISMno25
Length = 1518
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 39 agcgggtcgccctg 52
||||||||||||||
Sbjct: 567 agcgggtcgccctg 580
>ISNma11
Length = 1483
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 48 ccctgaacacgacg 61
||||||||||||||
Sbjct: 300 ccctgaacacgacg 313
>ISSer2
Length = 1473
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 145 cacggcctggcagt 158
||||||||||||||
Sbjct: 594 cacggcctggcagt 607
>ISAzs37
Length = 1058
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 62 tcggacgccggcga 75
||||||||||||||
Sbjct: 826 tcggacgccggcga 813
>ISAzs2
Length = 2609
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 239 ggctatcgctacac 252
||||||||||||||
Sbjct: 504 ggctatcgctacac 517
>ISPse1
Length = 1653
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 245 cgctacacgcgcga 258
||||||||||||||
Sbjct: 1133 cgctacacgcgcga 1146
>ISMlo5
Length = 1664
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 66 acgccggcgagcgc 79
||||||||||||||
Sbjct: 1501 acgccggcgagcgc 1514
>ISPfr3
Length = 1457
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 7 ggcggtcggccagc 20
||||||||||||||
Sbjct: 798 ggcggtcggccagc 785
>ISDds7
Length = 1123
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 99 tcctggctgcactg 112
||||||||||||||
Sbjct: 147 tcctggctgcactg 160
>ISGob2
Length = 1575
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 69 ccggcgagcgcacc 82
||||||||||||||
Sbjct: 393 ccggcgagcgcacc 380
>ISAzvi12
Length = 1248
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 7 ggcggtcggccagc 20
||||||||||||||
Sbjct: 757 ggcggtcggccagc 770
>ISAzvi8
Length = 1482
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 8 gcggtcggccagcg 21
||||||||||||||
Sbjct: 1344 gcggtcggccagcg 1357
>ISPa20
Length = 1246
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 35 gatcagcgggtcgc 48
||||||||||||||
Sbjct: 497 gatcagcgggtcgc 510
>ISGsu4
Length = 1640
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 215 ggtttcgccaaagt 228
||||||||||||||
Sbjct: 63 ggtttcgccaaagt 50
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_214_length_259_cov_1.2033_ID_5598
(259 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| TnXo19 | Tn3 | Xanthomonas oryzae | 36 | 0.021 | |
| ISRm2 | IS66 | Sinorhizobium meliloti | 34 | 0.082 | |
| ISAzba6 | IS630 | Azospirillum brasilense | 32 | 0.33 | |
| ISThsp17 | IS1595 | ISPna2 | Thiomonas sp. | 32 | 0.33 |
| IS1535 | IS607 | Mycobacterium tuberculosis | 32 | 0.33 | |
| ISBj9 | IS701 | Bradyrhizobium japonicum | 30 | 1.3 | |
| ISMdi18 | IS1595 | ISNwi1 | Methylobacterium dichloromethanicum | 30 | 1.3 |
| ISLca4 | ISLre2 | Lactobacillus casei | 30 | 1.3 | |
| ISHma17 | IS200/IS605 | IS605 | Haloarcula marismortui | 28 | 5.1 |
| ISHaar1 | IS200/IS605 | IS1341 | Halorubrum arcis | 28 | 5.1 |
| ISHsi2 | IS200/IS605 | IS605 | Haloarcula sinaiiensis | 28 | 5.1 |
| ISNma24 | IS200/IS605 | IS1341 | Natrialba magadii | 28 | 5.1 |
| ISNamo17 | IS200/IS605 | IS605 | Natronomonas moolapensis | 28 | 5.1 |
| ISSal1 | IS66 | Shewanella algae | 28 | 5.1 | |
| ISH35 | IS200/IS605 | Halobacterium salinarum | 28 | 5.1 | |
| ISNpe10 | IS200/IS605 | Natrinema pellirubrum | 28 | 5.1 | |
| ISFsp17 | ISKra4 | ISKra4 | Frankia sp. | 28 | 5.1 |
| ISMva4 | IS256 | Mycobacterium vanbaalenii | 28 | 5.1 | |
| ISPa38 | Tn3 | Pseudomonas aeruginosa | 28 | 5.1 | |
| ISAzs21 | IS66 | Azospirillum sp. | 28 | 5.1 | |
| ISAzs15 | ISAs1 | Azospirillum sp. | 28 | 5.1 | |
| ISBugl2 | IS5 | IS427 | Burkholderia glumae | 28 | 5.1 |
| ISNph20 | IS200/IS605 | IS1341 | Natronomonas pharaonis | 28 | 5.1 |
| ISDce1 | IS5 | Desulfotomaculum acetoxidans | 28 | 5.1 | |
| ISPfr17 | IS481 | Propionibacterium freudenreichii | 28 | 5.1 | |
| ISRjo1 | IS1380 | Rhodococcus jostii | 28 | 5.1 | |
| ISThsp8 | IS1634 | Thiomonas sp. | 28 | 5.1 | |
| ISGdi10 | IS481 | Gluconacetobacter diazotrophicus | 28 | 5.1 | |
| ISBad1 | IS21 | Bifidobacterium adolescentis | 28 | 5.1 | |
| ISAav5 | IS481 | Acidovorax avenae | 28 | 5.1 | |
| ISAisp3 | IS481 | Acidovorax sp. | 28 | 5.1 | |
| ISVei1 | IS3 | IS3 | Verminephrobacter eiseniae | 28 | 5.1 |
| ISGvi5 | IS3 | IS3 | Gloeobacter violaceus | 28 | 5.1 |
| ISNha2 | IS701 | Nitrobacter hamburgensis | 28 | 5.1 | |
| ISNha1 | IS701 | Nitrobacter hamburgensis | 28 | 5.1 | |
| ISAzo7 | IS1595 | ISSod11 | Azoarcus sp. | 28 | 5.1 |
| ISAzo6 | IS1634 | Azoarcus sp. | 28 | 5.1 | |
| ISDra6 | IS630 | Deinococcus radiodurans | 28 | 5.1 | |
| ISAzvi4 | IS110 | IS1111 | Azotobacter vinelandii | 28 | 5.1 |
| ISBlo2 | IS21 | Bifidobacterium longum | 28 | 5.1 | |
| ISXo2 | IS1595 | IS1595 | Xanthomomas oryzae | 28 | 5.1 |
| ISRm14 | IS66 | - | Sinorhizobium meliloti | 28 | 5.1 |
| IS481v2 | IS481 | - | Bordetella pertussis | 28 | 5.1 |
| IS481v1 | IS481 | - | Bordetella pertussis | 28 | 5.1 |
| IS481 | IS481 | Bordetella pertussis | 28 | 5.1 | |
| IS1081 | IS256 | - | Mycobacterium bovis | 28 | 5.1 |
| IS1066 | IS630 | - | Pseudomonas sp. | 28 | 5.1 |
>TnXo19
Length = 18767
Score = 36.2 bits (18), Expect = 0.021
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 231 cgggtggcggtgtcgaggtagt 252
|||||||||| |||||||||||
Sbjct: 14775 cgggtggcggcgtcgaggtagt 14754
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 151 ccggcaccaccacg 164
||||||||||||||
Sbjct: 6196 ccggcaccaccacg 6183
>ISRm2
Length = 2593
Score = 34.2 bits (17), Expect = 0.082
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 98 gatgtcgatcgacaaca 114
|||||||||||||||||
Sbjct: 2264 gatgtcgatcgacaaca 2280
>ISAzba6
Length = 1138
Score = 32.2 bits (16), Expect = 0.33
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 152 cggcaccaccacgctg 167
||||||||||||||||
Sbjct: 681 cggcaccaccacgctg 696
>ISThsp17
Length = 1044
Score = 32.2 bits (16), Expect = 0.33
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 14 gtgcgccaggccgcca 29
||||||||||||||||
Sbjct: 384 gtgcgccaggccgcca 399
>IS1535
Length = 2300
Score = 32.2 bits (16), Expect = 0.33
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 233 ggtggcggtgtcgagg 248
||||||||||||||||
Sbjct: 1551 ggtggcggtgtcgagg 1536
>ISBj9
Length = 1454
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 118 aaaagccgaccacct 132
|||||||||||||||
Sbjct: 84 aaaagccgaccacct 70
>ISMdi18
Length = 3479
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 136 tgtcgctgtcgaact 150
|||||||||||||||
Sbjct: 2353 tgtcgctgtcgaact 2339
>ISLca4
Length = 1595
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 90 tgttcggtgatgtcg 104
|||||||||||||||
Sbjct: 316 tgttcggtgatgtcg 330
>ISHma17
Length = 2009
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 57 tgcgcttgaaccag 70
||||||||||||||
Sbjct: 481 tgcgcttgaaccag 468
>ISHaar1
Length = 1590
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 135 ttgtcgctgtcgaa 148
||||||||||||||
Sbjct: 695 ttgtcgctgtcgaa 708
>ISHsi2
Length = 1833
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 135 ttgtcgctgtcgaa 148
||||||||||||||
Sbjct: 962 ttgtcgctgtcgaa 975
>ISNma24
Length = 1544
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 229 cgcgggtggcggtg 242
||||||||||||||
Sbjct: 651 cgcgggtggcggtg 638
>ISNamo17
Length = 1836
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 229 cgcgggtggcggtg 242
||||||||||||||
Sbjct: 1015 cgcgggtggcggtg 1002
>ISSal1
Length = 2528
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 58 gcgcttgaaccagg 71
||||||||||||||
Sbjct: 987 gcgcttgaaccagg 974
>ISH35
Length = 1836
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 229 cgcgggtggcggtg 242
||||||||||||||
Sbjct: 1015 cgcgggtggcggtg 1002
>ISNpe10
Length = 1835
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 229 cgcgggtggcggtg 242
||||||||||||||
Sbjct: 1014 cgcgggtggcggtg 1001
>ISFsp17
Length = 1693
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 242 gtcgaggtagtcgg 255
||||||||||||||
Sbjct: 1396 gtcgaggtagtcgg 1383
>ISMva4
Length = 1458
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 218 gacgcgttcaccgc 231
||||||||||||||
Sbjct: 1005 gacgcgttcaccgc 1018
>ISPa38
Length = 6455
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 16 gcgccaggccgcca 29
||||||||||||||
Sbjct: 1555 gcgccaggccgcca 1542
>ISAzs21
Length = 2598
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 13 cgtgcgccaggccg 26
||||||||||||||
Sbjct: 2150 cgtgcgccaggccg 2163
>ISAzs15
Length = 1263
Score = 28.2 bits (14), Expect = 5.1
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 238 cggtgtcgaggtagtcgg 255
|||| |||||||||||||
Sbjct: 1221 cggtttcgaggtagtcgg 1204
>ISBugl2
Length = 914
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 36 tggccgaccgcttc 49
||||||||||||||
Sbjct: 605 tggccgaccgcttc 618
>ISNph20
Length = 1624
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 135 ttgtcgctgtcgaa 148
||||||||||||||
Sbjct: 753 ttgtcgctgtcgaa 766
>ISDce1
Length = 1904
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 143 gtcgaactccggca 156
||||||||||||||
Sbjct: 1344 gtcgaactccggca 1331
>ISPfr17
Length = 1092
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 73 cggcttcgctggcg 86
||||||||||||||
Sbjct: 978 cggcttcgctggcg 965
>ISRjo1
Length = 1967
Score = 28.2 bits (14), Expect = 5.1
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 238 cggtgtcgaggtagtcgg 255
|||||||||||| |||||
Sbjct: 1344 cggtgtcgaggtcgtcgg 1327
>ISThsp8
Length = 1929
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 141 ctgtcgaactccgg 154
||||||||||||||
Sbjct: 14 ctgtcgaactccgg 1
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 141 ctgtcgaactccgg 154
||||||||||||||
Sbjct: 1916 ctgtcgaactccgg 1929
>ISGdi10
Length = 1229
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 187 ccttgtcggccttg 200
||||||||||||||
Sbjct: 571 ccttgtcggccttg 558
>ISBad1
Length = 2525
Score = 28.2 bits (14), Expect = 5.1
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 191 gtcggccttgcgtgcgta 208
|||||||||||| |||||
Sbjct: 380 gtcggccttgcgcgcgta 363
>ISAav5
Length = 1023
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 72 gcggcttcgctggc 85
||||||||||||||
Sbjct: 184 gcggcttcgctggc 171
>ISAisp3
Length = 1023
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 72 gcggcttcgctggc 85
||||||||||||||
Sbjct: 184 gcggcttcgctggc 171
>ISVei1
Length = 1214
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 58 gcgcttgaaccagg 71
||||||||||||||
Sbjct: 836 gcgcttgaaccagg 823
>ISGvi5
Length = 1287
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 83 ggcgcgttgttcgg 96
||||||||||||||
Sbjct: 103 ggcgcgttgttcgg 90
>ISNha2
Length = 1455
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 118 aaaagccgaccacc 131
||||||||||||||
Sbjct: 85 aaaagccgaccacc 72
>ISNha1
Length = 1452
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 118 aaaagccgaccacc 131
||||||||||||||
Sbjct: 85 aaaagccgaccacc 72
>ISAzo7
Length = 1044
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 72 gcggcttcgctggc 85
||||||||||||||
Sbjct: 147 gcggcttcgctggc 160
>ISAzo6
Length = 1925
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 141 ctgtcgaactccgg 154
||||||||||||||
Sbjct: 14 ctgtcgaactccgg 1
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 141 ctgtcgaactccgg 154
||||||||||||||
Sbjct: 1912 ctgtcgaactccgg 1925
>ISDra6
Length = 1072
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 40 cgaccgcttccatt 53
||||||||||||||
Sbjct: 142 cgaccgcttccatt 155
>ISAzvi4
Length = 1351
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 241 tgtcgaggtagtcg 254
||||||||||||||
Sbjct: 641 tgtcgaggtagtcg 628
>ISBlo2
Length = 2455
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 220 cgcgttcaccgcgg 233
||||||||||||||
Sbjct: 1581 cgcgttcaccgcgg 1594
>ISXo2
Length = 1070
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 15 tgcgccaggccgcc 28
||||||||||||||
Sbjct: 450 tgcgccaggccgcc 437
>ISRm14
Length = 2695
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 32 gagctggccgaccg 45
||||||||||||||
Sbjct: 1554 gagctggccgaccg 1567
>IS481v2
Length = 1043
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 191 gtcggccttgcgtg 204
||||||||||||||
Sbjct: 868 gtcggccttgcgtg 881
>IS481v1
Length = 1043
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 191 gtcggccttgcgtg 204
||||||||||||||
Sbjct: 868 gtcggccttgcgtg 881
>IS481
Length = 1043
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 191 gtcggccttgcgtg 204
||||||||||||||
Sbjct: 868 gtcggccttgcgtg 881
>IS1081
Length = 1435
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 236 ggcggtgtcgaggt 249
||||||||||||||
Sbjct: 1070 ggcggtgtcgaggt 1057
>IS1066
Length = 1137
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 229 cgcgggtggcggtg 242
||||||||||||||
Sbjct: 70 cgcgggtggcggtg 83
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_215_length_259_cov_0.802198_ID_5600
(259 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISPsy27 | IS1182 | Pseudomonas syringae | 34 | 0.082 | |
| ISPsy6 | IS1182 | Pseudomonas syringae | 34 | 0.082 | |
| ISDge6 | IS5 | ISL2 | Deinococcus geothermalis | 32 | 0.33 |
| ISPepr5 | IS21 | Pelobacter propionicus | 32 | 0.33 | |
| ISAzo34 | IS256 | Azoarcus sp. | 30 | 1.3 | |
| ISAli18 | ISL3 | Azospirillum lipoferum | 30 | 1.3 | |
| ISPst3 | IS21 | Pseudomonas stutzeri | 30 | 1.3 | |
| ISAeme25 | IS256 | Aeromonas media | 28 | 5.1 | |
| ISXci1 | IS21 | Xanthomonas citri | 28 | 5.1 | |
| ISHel1 | IS200/IS605 | IS1341 | Haloferax elongans | 28 | 5.1 |
| ISMno29 | IS110 | Methylobacterium nodulans | 28 | 5.1 | |
| ISHmu6 | IS200/IS605 | Halomicrobium mukohataei | 28 | 5.1 | |
| ISLesp2 | ISKra4 | ISKra4 | Leptolyngbya sp. | 28 | 5.1 |
| ISNpu15 | ISKra4 | ISMich2 | Nostoc punctiforme | 28 | 5.1 |
| ISSaci1 | ISAzo13 | Streptomyces acidiscabies | 28 | 5.1 | |
| ISCur2 | IS256 | IS1249 | Corynebacterium urealyticum | 28 | 5.1 |
| ISEc46 | IS200/IS605 | Escherichia coli | 28 | 5.1 | |
| ISAzs27 | IS30 | Azospirillum sp. | 28 | 5.1 | |
| ISPaes2 | IS5 | IS427 | Paracoccus aestuarii | 28 | 5.1 |
| ISPbe1 | IS3 | IS407 | Paracoccus bengalensis | 28 | 5.1 |
| ISVsp10 | IS110 | IS1111 | Verrucomicrobium spinosum | 28 | 5.1 |
| ISBmu20 | IS5 | IS5 | Burkholderia multivorans | 28 | 5.1 |
| ISMaq4 | IS1380 | Marinobacter aquaeolei | 28 | 5.1 | |
| ISSyth1 | IS1182 | Symbiobacterium thermophilum | 28 | 5.1 | |
| ISSpo7 | IS5 | IS427 | Silicibacter pomeroyi | 28 | 5.1 |
| ISSav5 | IS481 | Streptomyces avermitilis | 28 | 5.1 | |
| ISAzo22 | IS110 | Azoarcus sp. | 28 | 5.1 | |
| ISThsp9 | Tn3 | Thiomonas sp. | 28 | 5.1 | |
| ISAli10 | IS66 | Azospirillum lipoferum | 28 | 5.1 | |
| ISPre3 | IS66 | Pseudomonas resinovorans | 28 | 5.1 | |
| ISRel1 | IS4 | IS4Sa | Rhizobium etli | 28 | 5.1 |
| ISCsp2 | IS1595 | ISSod11 | Comamonas sp | 28 | 5.1 |
| ISAisp1 | IS1595 | ISSod11 | Acidovorax sp. | 28 | 5.1 |
| ISSod13 | IS481 | Shewanella oneidensis | 28 | 5.1 | |
| ISHma12 | IS200/IS605 | Haloarcula marismortui | 28 | 5.1 | |
| IS406 | IS256 | - | Burkholderia cepacia | 28 | 5.1 |
| IS1271 | IS4 | IS4 | Enterobacter agglomerans | 28 | 5.1 |
| IS1021 | IS5 | IS5 | Ralstonia solanacearum | 28 | 5.1 |
>ISPsy27
Length = 1596
Score = 34.2 bits (17), Expect = 0.082
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 99 acaacgtacaaaccgtcgtgg 119
||||||||||||||| |||||
Sbjct: 814 acaacgtacaaaccgccgtgg 834
>ISPsy6
Length = 1603
Score = 34.2 bits (17), Expect = 0.082
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 99 acaacgtacaaaccgtcgtgg 119
||||||| |||||||||||||
Sbjct: 814 acaacgtgcaaaccgtcgtgg 834
>ISDge6
Length = 1117
Score = 32.2 bits (16), Expect = 0.33
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 241 ccgcctgatcgccaag 256
||||||||||||||||
Sbjct: 877 ccgcctgatcgccaag 892
>ISPepr5
Length = 2193
Score = 32.2 bits (16), Expect = 0.33
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 244 cctgatcgccaagctg 259
||||||||||||||||
Sbjct: 1762 cctgatcgccaagctg 1777
>ISAzo34
Length = 1439
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 180 cgcgccttgaagaag 194
|||||||||||||||
Sbjct: 114 cgcgccttgaagaag 128
>ISAli18
Length = 1752
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 65 ctcaccgacgcgctg 79
|||||||||||||||
Sbjct: 802 ctcaccgacgcgctg 816
>ISPst3
Length = 2606
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 70 cgacgcgctgatcgc 84
|||||||||||||||
Sbjct: 1183 cgacgcgctgatcgc 1197
>ISAeme25
Length = 1385
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 117 tggtacgcaacggc 130
||||||||||||||
Sbjct: 275 tggtacgcaacggc 288
>ISXci1
Length = 2013
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 16 gcggcgccccgaag 29
||||||||||||||
Sbjct: 1341 gcggcgccccgaag 1354
>ISHel1
Length = 1563
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 93 tcaaccacaacgta 106
||||||||||||||
Sbjct: 706 tcaaccacaacgta 693
>ISMno29
Length = 1192
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 242 cgcctgatcgccaa 255
||||||||||||||
Sbjct: 1040 cgcctgatcgccaa 1053
>ISHmu6
Length = 1889
Score = 28.2 bits (14), Expect = 5.1
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 107 caaaccgtcgtggtacgc 124
||||||||||||| ||||
Sbjct: 858 caaaccgtcgtggaacgc 875
>ISLesp2
Length = 1502
Score = 28.2 bits (14), Expect = 5.1
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 146 gaccaaacgctggagatt 163
||||||||||||| ||||
Sbjct: 433 gaccaaacgctggggatt 450
>ISNpu15
Length = 1218
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 68 accgacgcgctgat 81
||||||||||||||
Sbjct: 455 accgacgcgctgat 442
>ISSaci1
Length = 1747
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 58 ccccagcctcaccg 71
||||||||||||||
Sbjct: 1343 ccccagcctcaccg 1356
>ISCur2
Length = 1384
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 77 ctgatcgctgtcat 90
||||||||||||||
Sbjct: 605 ctgatcgctgtcat 618
>ISEc46
Length = 1763
Score = 28.2 bits (14), Expect = 5.1
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 80 atcgctgtcatgttcaac 97
||||| ||||||||||||
Sbjct: 1606 atcgcggtcatgttcaac 1589
>ISAzs27
Length = 1270
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 246 tgatcgccaagctg 259
||||||||||||||
Sbjct: 368 tgatcgccaagctg 381
>ISPaes2
Length = 841
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 218 aaggaatacggccc 231
||||||||||||||
Sbjct: 217 aaggaatacggccc 230
>ISPbe1
Length = 1200
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 231 ccgagctgtgccgc 244
||||||||||||||
Sbjct: 146 ccgagctgtgccgc 159
>ISVsp10
Length = 1614
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 6 tggccagcatgcgg 19
||||||||||||||
Sbjct: 446 tggccagcatgcgg 433
>ISBmu20
Length = 1158
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 191 gaagacgcgctgca 204
||||||||||||||
Sbjct: 288 gaagacgcgctgca 301
>ISMaq4
Length = 1559
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 185 cttgaagaagacgc 198
||||||||||||||
Sbjct: 1227 cttgaagaagacgc 1240
>ISSyth1
Length = 1527
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 43 tgagccggtcttcg 56
||||||||||||||
Sbjct: 1277 tgagccggtcttcg 1290
>ISSpo7
Length = 843
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 218 aaggaatacggccc 231
||||||||||||||
Sbjct: 218 aaggaatacggccc 231
>ISSav5
Length = 1953
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 225 acggccccgagctg 238
||||||||||||||
Sbjct: 1802 acggccccgagctg 1815
>ISAzo22
Length = 1763
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 238 gtgccgcctgatcg 251
||||||||||||||
Sbjct: 400 gtgccgcctgatcg 413
>ISThsp9
Length = 6215
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 232 cgagctgtgccgcc 245
||||||||||||||
Sbjct: 1543 cgagctgtgccgcc 1530
>ISAli10
Length = 2584
Score = 28.2 bits (14), Expect = 5.1
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 67 caccgacgcgctgatcgc 84
|||||| |||||||||||
Sbjct: 1048 caccgaggcgctgatcgc 1065
>ISPre3
Length = 2957
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 246 tgatcgccaagctg 259
||||||||||||||
Sbjct: 931 tgatcgccaagctg 944
>ISRel1
Length = 1273
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 124 caacggcctgcgtc 137
||||||||||||||
Sbjct: 361 caacggcctgcgtc 374
>ISCsp2
Length = 1089
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 208 cgtggagcccaagg 221
||||||||||||||
Sbjct: 582 cgtggagcccaagg 595
>ISAisp1
Length = 1086
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 208 cgtggagcccaagg 221
||||||||||||||
Sbjct: 580 cgtggagcccaagg 593
>ISSod13
Length = 1202
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 147 accaaacgctggag 160
||||||||||||||
Sbjct: 986 accaaacgctggag 999
>ISHma12
Length = 1835
Score = 28.2 bits (14), Expect = 5.1
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 107 caaaccgtcgtggtacgc 124
||||||||||||| ||||
Sbjct: 804 caaaccgtcgtggaacgc 821
>IS406
Length = 1367
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 197 gcgctgcaggacgt 210
||||||||||||||
Sbjct: 521 gcgctgcaggacgt 508
>IS1271
Length = 1414
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 232 cgagctgtgccgcc 245
||||||||||||||
Sbjct: 665 cgagctgtgccgcc 652
>IS1021
Length = 1209
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 191 gaagacgcgctgca 204
||||||||||||||
Sbjct: 319 gaagacgcgctgca 332
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_216_length_259_cov_0.802198_ID_5602
(259 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISMex2 | IS481 | Methylobacterium extorquens | 32 | 0.33 | |
| ISRle3 | IS66 | Rhizobium leguminosarum | 32 | 0.33 | |
| ISH18 | IS110 | IS1111 | Haloarcula marismortui | 32 | 0.33 |
| IS292 | IS66 | - | Agrobacterium sp | 32 | 0.33 |
| ISAeme4 | IS4 | ISH8 | Aeromonas media | 30 | 1.3 |
| ISStr1 | IS1380 | Salinispora tropica | 30 | 1.3 | |
| ISThsp13 | IS1380 | Thiomonas sp. | 30 | 1.3 | |
| ISRhsp5 | IS66 | Rhodobacter sphaeroides | 30 | 1.3 | |
| ISXoo13 | ISL3 | Xanthomonas oryzae | 30 | 1.3 | |
| ISRpa2 | IS3 | IS407 | Rhodopseudomonas palustris | 30 | 1.3 |
| ISXau1 | IS3 | IS407 | Xanthobacter autotrophicus | 30 | 1.3 |
| ISFsp4 | IS200/IS605 | Frankia sp. | 30 | 1.3 | |
| ISSau2 | IS3 | IS150 | Staphylococcus aureus | 30 | 1.3 |
| IS994 | IS3 | IS51 | Renibacterium salmoninarum | 30 | 1.3 |
| ISNin1 | IS200/IS605 | IS605 | Natronolimnobius innermongolicus | 28 | 5.1 |
| ISNhu1 | IS200/IS605 | IS605 | Natrialba hulunbeirensis | 28 | 5.1 |
| ISH34 | IS200/IS605 | Halobacterium salinarum | 28 | 5.1 | |
| ISDsp5 | IS3 | IS407 | Dehalococcoides sp. | 28 | 5.1 |
| ISNph15 | IS200/IS605 | IS1341 | Natronomonas pharaonis | 28 | 5.1 |
| ISMav7 | IS1380 | Mycobacterium avium | 28 | 5.1 | |
| ISMyma7 | IS1380 | - | Mycobacterium marinum | 28 | 5.1 |
| ISStma12 | IS481 | Stenotrophomonas maltophilia | 28 | 5.1 | |
| ISTha2 | ISAs1 | Thauera sp. | 28 | 5.1 | |
| ISAzo26 | IS91 | Azoarcus sp. | 28 | 5.1 | |
| ISStau5 | IS66 | ISBst12 | Stigmatella aurantiaca | 28 | 5.1 |
| ISBth165 | ISNCY | Bacillus thuringiensis | 28 | 5.1 | |
| ISMsm3 | IS1380 | Mycobacterium smegmatis | 28 | 5.1 | |
| ISMyma2 | IS1380 | Mycobacterium marinum | 28 | 5.1 | |
| ISSfl3 | IS66 | - | Shigella flexneri | 28 | 5.1 |
| IS1Sa | IS1 | - | Synechocystis sp. | 28 | 5.1 |
>ISMex2
Length = 1031
Score = 32.2 bits (16), Expect = 0.33
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 81 tcggcttcaaagcggg 96
||||||||||||||||
Sbjct: 234 tcggcttcaaagcggg 219
>ISRle3
Length = 2500
Score = 32.2 bits (16), Expect = 0.33
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 172 tgcggtcgagttcgac 187
||||||||||||||||
Sbjct: 1573 tgcggtcgagttcgac 1558
>ISH18
Length = 1548
Score = 32.2 bits (16), Expect = 0.33
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 186 acatcgagttgattga 201
||||||||||||||||
Sbjct: 760 acatcgagttgattga 775
>IS292
Length = 2496
Score = 32.2 bits (16), Expect = 0.33
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 172 tgcggtcgagttcgac 187
||||||||||||||||
Sbjct: 927 tgcggtcgagttcgac 942
>ISAeme4
Length = 1383
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 171 atgcggtcgagttcg 185
|||||||||||||||
Sbjct: 166 atgcggtcgagttcg 152
>ISStr1
Length = 1664
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 141 tcgacgcgggcgtgg 155
|||||||||||||||
Sbjct: 1205 tcgacgcgggcgtgg 1191
>ISThsp13
Length = 1583
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 145 cgcgggcgtggccga 159
|||||||||||||||
Sbjct: 469 cgcgggcgtggccga 455
>ISRhsp5
Length = 2528
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 172 tgcggtcgagttcga 186
|||||||||||||||
Sbjct: 1582 tgcggtcgagttcga 1568
>ISXoo13
Length = 1312
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 173 gcggtcgagttcgac 187
|||||||||||||||
Sbjct: 120 gcggtcgagttcgac 134
>ISRpa2
Length = 1265
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 49 ccgcgagtgcctggc 63
|||||||||||||||
Sbjct: 758 ccgcgagtgcctggc 772
>ISXau1
Length = 1272
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 49 ccgcgagtgcctggc 63
|||||||||||||||
Sbjct: 759 ccgcgagtgcctggc 773
>ISFsp4
Length = 1784
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 14 gtccgaggtgtcgtc 28
|||||||||||||||
Sbjct: 700 gtccgaggtgtcgtc 714
>ISSau2
Length = 1660
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 193 gttgattgatttgaa 207
|||||||||||||||
Sbjct: 311 gttgattgatttgaa 297
>IS994
Length = 1345
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 173 gcggtcgagttcgac 187
|||||||||||||||
Sbjct: 361 gcggtcgagttcgac 347
>ISNin1
Length = 1902
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 23 gtcgtctgcaatct 36
||||||||||||||
Sbjct: 333 gtcgtctgcaatct 346
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 223 ggttcgtgtcgtca 236
||||||||||||||
Sbjct: 932 ggttcgtgtcgtca 919
>ISNhu1
Length = 1902
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 23 gtcgtctgcaatct 36
||||||||||||||
Sbjct: 333 gtcgtctgcaatct 346
>ISH34
Length = 1853
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 223 ggttcgtgtcgtca 236
||||||||||||||
Sbjct: 883 ggttcgtgtcgtca 870
>ISDsp5
Length = 1210
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 50 cgcgagtgcctggc 63
||||||||||||||
Sbjct: 786 cgcgagtgcctggc 799
>ISNph15
Length = 1476
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 77 gtcctcggcttcaa 90
||||||||||||||
Sbjct: 794 gtcctcggcttcaa 781
>ISMav7
Length = 1691
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 141 tcgacgcgggcgtg 154
||||||||||||||
Sbjct: 1218 tcgacgcgggcgtg 1205
>ISMyma7
Length = 1694
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 141 tcgacgcgggcgtg 154
||||||||||||||
Sbjct: 1216 tcgacgcgggcgtg 1203
>ISStma12
Length = 1023
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 162 tcacgactgatgcg 175
||||||||||||||
Sbjct: 393 tcacgactgatgcg 406
>ISTha2
Length = 1268
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 183 tcgacatcgagttg 196
||||||||||||||
Sbjct: 264 tcgacatcgagttg 277
>ISAzo26
Length = 2604
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 46 ccgccgcgagtgcc 59
||||||||||||||
Sbjct: 2204 ccgccgcgagtgcc 2217
>ISStau5
Length = 1580
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 209 tatcaccgcgtgcg 222
||||||||||||||
Sbjct: 1124 tatcaccgcgtgcg 1137
>ISBth165
Length = 996
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 197 attgatttgaaata 210
||||||||||||||
Sbjct: 273 attgatttgaaata 260
>ISMsm3
Length = 1695
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 141 tcgacgcgggcgtg 154
||||||||||||||
Sbjct: 1217 tcgacgcgggcgtg 1204
>ISMyma2
Length = 1679
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 141 tcgacgcgggcgtg 154
||||||||||||||
Sbjct: 1207 tcgacgcgggcgtg 1194
>ISSfl3
Length = 2729
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 244 gaaggtgcagaaca 257
||||||||||||||
Sbjct: 837 gaaggtgcagaaca 850
>IS1Sa
Length = 802
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 229 tgtcgtcaaaaatg 242
||||||||||||||
Sbjct: 106 tgtcgtcaaaaatg 119
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_217_length_259_cov_0.802198_ID_5604
(259 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISHvo19 | IS200/IS605 | IS1341 | Haloferax volcanii | 32 | 0.33 |
| ISAar39 | ISL3 | Arthrobacter arilaitensis | 30 | 1.3 | |
| ISAzo29 | ISAs1 | Azoarcus sp. | 30 | 1.3 | |
| ISAzca2 | IS66 | Azorhizobium caulinodans | 30 | 1.3 | |
| ISVbsp1 | IS4 | IS4 | Vibrio sp. | 30 | 1.3 |
| ISTesp1 | IS3 | IS51 | Terrabacter sp. | 30 | 1.3 |
| ISRsl1 | ISLre2 | Runella slithyformis | 28 | 5.1 | |
| ISDpr9 | ISAzo13 | Delta proteobacterium | 28 | 5.1 | |
| ISMno33 | IS1182 | Methylobacterium nodulans | 28 | 5.1 | |
| ISMno23 | IS91 | Methylobacterium nodulans | 28 | 5.1 | |
| ISPfr3 | ISL3 | Propionibacterium freudenreichii | 28 | 5.1 | |
| ISNml2 | IS1380 | Nakamurella multipartita | 28 | 5.1 | |
| ISMex10 | ISL3 | Methylobacterium extorquens | 28 | 5.1 | |
| ISMysp6 | IS481 | Mycobacterium sp. | 28 | 5.1 | |
| ISRosp4 | IS66 | Roseobacter sp. | 28 | 5.1 | |
| ISNisp6 | IS66 | Nitrobacter sp. | 28 | 5.1 | |
| ISSpu1 | IS3 | IS3 | Shewanella putrefaciens | 28 | 5.1 |
| ISCARN93 | IS4 | IS4Sa | Metagenomic data from CARNOULES | 28 | 5.1 |
>ISHvo19
Length = 1435
Score = 32.2 bits (16), Expect = 0.33
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 153 gctggatgcaggacga 168
||||||||||||||||
Sbjct: 911 gctggatgcaggacga 926
>ISAar39
Length = 1433
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 109 ccgatcgccagtgcg 123
|||||||||||||||
Sbjct: 1024 ccgatcgccagtgcg 1038
>ISAzo29
Length = 1304
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 111 gatcgccagtgcgat 125
|||||||||||||||
Sbjct: 1015 gatcgccagtgcgat 1001
>ISAzca2
Length = 2458
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 105 cgcgccgatcgccag 119
|||||||||||||||
Sbjct: 1926 cgcgccgatcgccag 1940
>ISVbsp1
Length = 1425
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 125 tcaacggcagaatcc 139
|||||||||||||||
Sbjct: 871 tcaacggcagaatcc 885
>ISTesp1
Length = 1353
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 30 ctcgataccctcggc 44
|||||||||||||||
Sbjct: 689 ctcgataccctcggc 675
>ISRsl1
Length = 1302
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 134 gaatccagatggcc 147
||||||||||||||
Sbjct: 809 gaatccagatggcc 796
>ISDpr9
Length = 1309
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 194 tgcttgttcccgga 207
||||||||||||||
Sbjct: 1036 tgcttgttcccgga 1023
>ISMno33
Length = 1767
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 244 gatggcagccagca 257
||||||||||||||
Sbjct: 533 gatggcagccagca 520
>ISMno23
Length = 2271
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 106 gcgccgatcgccag 119
||||||||||||||
Sbjct: 1307 gcgccgatcgccag 1320
>ISPfr3
Length = 1457
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 121 gcgatcaacggcag 134
||||||||||||||
Sbjct: 1326 gcgatcaacggcag 1339
>ISNml2
Length = 1689
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 102 ccacgcgccgatcg 115
||||||||||||||
Sbjct: 660 ccacgcgccgatcg 647
>ISMex10
Length = 1754
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 87 ggcttcccacgcca 100
||||||||||||||
Sbjct: 1054 ggcttcccacgcca 1067
>ISMysp6
Length = 1077
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 112 atcgccagtgcgat 125
||||||||||||||
Sbjct: 187 atcgccagtgcgat 200
>ISRosp4
Length = 2709
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 22 ttgccgatctcgat 35
||||||||||||||
Sbjct: 440 ttgccgatctcgat 427
>ISNisp6
Length = 2489
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 106 gcgccgatcgccag 119
||||||||||||||
Sbjct: 1958 gcgccgatcgccag 1971
>ISSpu1
Length = 1244
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 56 caacctcaatgtat 69
||||||||||||||
Sbjct: 1137 caacctcaatgtat 1124
>ISCARN93
Length = 1311
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 91 tcccacgccagcca 104
||||||||||||||
Sbjct: 57 tcccacgccagcca 44
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_218_length_259_cov_0.802198_ID_5606
(259 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISCc2 | IS110 | Caulobacter crescentus | 36 | 0.021 | |
| ISMtsp17 | IS110 | IS1111 | Methylobacterium sp. | 32 | 0.33 |
| ISHko3 | IS200/IS605 | Halorubrum kocurii | 30 | 1.3 | |
| ISMpo4 | IS110 | IS1111 | Methylobacterium populi | 30 | 1.3 |
| ISHasa1 | IS200/IS605 | IS1341 | Halorubrum saccharovorum | 30 | 1.3 |
| ISNpe9 | IS6 | Natrinema pellirubrum | 30 | 1.3 | |
| ISUnCu15 | IS5 | IS903 | Uncultured bacterium | 30 | 1.3 |
| ISRm17 | ISNCY | ISDol1 | Sinorhizobium meliloti | 30 | 1.3 |
| ISMlo5 | ISNCY | ISDol1 | Mesorhizobium loti | 30 | 1.3 |
| ISMex21 | IS630 | Methylobacterium extorquens | 30 | 1.3 | |
| ISJs1 | IS481 | Janibacter sp. | 30 | 1.3 | |
| ISAzo26 | IS91 | Azoarcus sp. | 30 | 1.3 | |
| ISKrh1 | IS481 | Kocuria rhizophila | 30 | 1.3 | |
| ISSpo2 | IS1380 | Silicibacter pomeroyi | 30 | 1.3 | |
| ISAzs29 | Tn3 | Azospirillum sp. | 28 | 5.1 | |
| ISAzs23 | IS3 | IS3 | Azospirillum sp. | 28 | 5.1 |
| ISRel13 | IS5 | IS427 | Rhizobium etli | 28 | 5.1 |
| ISPeth2 | IS5 | IS5 | Pelotomaculum thermopropionicum | 28 | 5.1 |
| ISMpo9 | IS701 | Methylobacterium populi | 28 | 5.1 | |
| ISPfr21 | IS481 | Propionibacterium freudenreichii | 28 | 5.1 | |
| ISAnsp12 | IS66 | Anaeromyxobacter sp. | 28 | 5.1 | |
| ISCARN17 | IS21 | Metagenomic data from CARNOULES | 28 | 5.1 | |
| ISBj7_B | IS66 | Bradyrhizobium japonicum | 28 | 5.1 | |
| ISAfe7 | IS3 | IS51 | Acidithiobacillus ferrooxidans | 28 | 5.1 |
| ISGdi6 | IS630 | Gluconacetobacter diazotrophicus | 28 | 5.1 | |
| ISMno3 | IS66 | ISBst12 | Methylobacterium nodulans | 28 | 5.1 |
| ISGob3 | IS66 | ISBst12 | Gemmata obscuriglobus | 28 | 5.1 |
| ISAs8 | IS1 | Aeromonas salmonicida | 28 | 5.1 | |
| ISDge5 | IS701 | Deinococcus geothermalis | 28 | 5.1 | |
| ISMsm2 | IS630 | Mycobacterium smegmatis | 28 | 5.1 | |
| ISBfun4 | IS701 | Burkholderia xenovorans | 28 | 5.1 | |
| ISPa11 | IS110 | IS1111 | Pseudomonas aeruginosa | 28 | 5.1 |
| ISHsp1 | IS5 | IS5 | Halomonas sp. | 28 | 5.1 |
| ISPa42 | Tn3 | Pseudomonas aeruginosa | 28 | 5.1 |
>ISCc2
Length = 1213
Score = 36.2 bits (18), Expect = 0.021
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 217 cccgagatcggcacggtg 234
||||||||||||||||||
Sbjct: 870 cccgagatcggcacggtg 887
>ISMtsp17
Length = 1230
Score = 32.2 bits (16), Expect = 0.33
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 4 ctgcgcctgcagcgcc 19
||||||||||||||||
Sbjct: 759 ctgcgcctgcagcgcc 744
>ISHko3
Length = 1862
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 132 cggcggcggcgtggc 146
|||||||||||||||
Sbjct: 1480 cggcggcggcgtggc 1494
>ISMpo4
Length = 1767
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 50 cgcattcgctgatct 64
|||||||||||||||
Sbjct: 1472 cgcattcgctgatct 1486
>ISHasa1
Length = 1432
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 13 cagcgccgcgagtac 27
|||||||||||||||
Sbjct: 811 cagcgccgcgagtac 825
>ISNpe9
Length = 742
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 195 cacccagtgccagat 209
|||||||||||||||
Sbjct: 251 cacccagtgccagat 237
>ISUnCu15
Length = 1053
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 220 gagatcggcacggtg 234
|||||||||||||||
Sbjct: 628 gagatcggcacggtg 642
>ISRm17
Length = 1664
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 144 ggcagtgatcgtgcc 158
|||||||||||||||
Sbjct: 705 ggcagtgatcgtgcc 691
>ISMlo5
Length = 1664
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 144 ggcagtgatcgtgcc 158
|||||||||||||||
Sbjct: 702 ggcagtgatcgtgcc 688
>ISMex21
Length = 1040
Score = 30.2 bits (15), Expect = 1.3
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 131 ccggcggcggcgtggcagt 149
|||||||||||| ||||||
Sbjct: 996 ccggcggcggcgaggcagt 978
>ISJs1
Length = 1104
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 38 tcgcacctgtggcgc 52
|||||||||||||||
Sbjct: 840 tcgcacctgtggcgc 854
>ISAzo26
Length = 2604
Score = 30.2 bits (15), Expect = 1.3
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 6 gcgcctgcagcgccgcgag 24
|||| ||||||||||||||
Sbjct: 1697 gcgcgtgcagcgccgcgag 1679
>ISKrh1
Length = 2854
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 38 tcgcacctgtggcgc 52
|||||||||||||||
Sbjct: 1843 tcgcacctgtggcgc 1857
>ISSpo2
Length = 1664
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 56 cgctgatctgccaga 70
|||||||||||||||
Sbjct: 1249 cgctgatctgccaga 1263
>ISAzs29
Length = 3897
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 133 ggcggcggcgtggc 146
||||||||||||||
Sbjct: 1403 ggcggcggcgtggc 1390
>ISAzs23
Length = 1596
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 83 ccgaagacggcccc 96
||||||||||||||
Sbjct: 379 ccgaagacggcccc 392
>ISRel13
Length = 844
Score = 28.2 bits (14), Expect = 5.1
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 136 ggcggcgtggcagtgatc 153
|||| |||||||||||||
Sbjct: 627 ggcgccgtggcagtgatc 644
>ISPeth2
Length = 1642
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 57 gctgatctgccaga 70
||||||||||||||
Sbjct: 499 gctgatctgccaga 512
>ISMpo9
Length = 1413
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 149 tgatcgtgccgccc 162
||||||||||||||
Sbjct: 1075 tgatcgtgccgccc 1062
>ISPfr21
Length = 2632
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 38 tcgcacctgtggcg 51
||||||||||||||
Sbjct: 2368 tcgcacctgtggcg 2381
>ISAnsp12
Length = 2926
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 10 ctgcagcgccgcga 23
||||||||||||||
Sbjct: 1160 ctgcagcgccgcga 1147
>ISCARN17
Length = 2539
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 182 ccgacaccgagttc 195
||||||||||||||
Sbjct: 2132 ccgacaccgagttc 2145
>ISBj7_B
Length = 2865
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 6 gcgcctgcagcgcc 19
||||||||||||||
Sbjct: 971 gcgcctgcagcgcc 958
>ISAfe7
Length = 1329
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 245 tgcgcgtgcgcaac 258
||||||||||||||
Sbjct: 505 tgcgcgtgcgcaac 518
>ISGdi6
Length = 1051
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 47 tggcgcattcgctg 60
||||||||||||||
Sbjct: 1003 tggcgcattcgctg 990
>ISMno3
Length = 1364
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 3 gctgcgcctgcagc 16
||||||||||||||
Sbjct: 931 gctgcgcctgcagc 944
>ISGob3
Length = 1597
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 73 ccggtgcccgccga 86
||||||||||||||
Sbjct: 572 ccggtgcccgccga 585
>ISAs8
Length = 754
Score = 28.2 bits (14), Expect = 5.1
Identities = 20/22 (90%)
Strand = Plus / Plus
Query: 96 caccaacacctttgaagcccgt 117
||||||||||| ||| ||||||
Sbjct: 175 caccaacacctatgaggcccgt 196
>ISDge5
Length = 1150
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 57 gctgatctgccaga 70
||||||||||||||
Sbjct: 110 gctgatctgccaga 97
>ISMsm2
Length = 1126
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 222 gatcggcacggtgc 235
||||||||||||||
Sbjct: 217 gatcggcacggtgc 230
>ISBfun4
Length = 1464
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 8 gcctgcagcgccgc 21
||||||||||||||
Sbjct: 815 gcctgcagcgccgc 828
>ISPa11
Length = 1372
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 31 cgcctgatcgcacc 44
||||||||||||||
Sbjct: 294 cgcctgatcgcacc 307
>ISHsp1
Length = 1518
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 66 ccagattccggtgc 79
||||||||||||||
Sbjct: 782 ccagattccggtgc 769
>ISPa42
Length = 16941
Score = 28.2 bits (14), Expect = 5.1
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 1 ctgctgcgcctgcagcgc 18
|||||||||||| |||||
Sbjct: 15180 ctgctgcgcctgaagcgc 15163
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_219_length_259_cov_0.802198_ID_5608
(259 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISStma17 | IS3 | IS51 | Stenotrophomonas maltophilia | 32 | 0.33 |
| ISArsp6 | Tn3 | Arthrobacter sp. | 32 | 0.33 | |
| ISHwa29 | IS200/IS605 | IS1341 | Haloquadratum walsbyi | 30 | 1.3 |
| ISMasp7 | IS1380 | Magnetococcus sp. | 30 | 1.3 | |
| ISAnsp11 | IS3 | IS3 | Anaeromyxobacter sp. | 30 | 1.3 |
| ISCausp2 | IS1595 | ISNha5 | Caulobacter sp. | 30 | 1.3 |
| ISStag1 | IS6 | Stappia aggregata | 30 | 1.3 | |
| ISHla16 | IS200/IS605 | Halorubrum lacusprofundi | 28 | 5.1 | |
| ISPsp9 | IS1380 | Pseudomonas sp. | 28 | 5.1 | |
| ISNamo4 | IS5 | Natronomonas moolapensis | 28 | 5.1 | |
| ISAau5 | ISNCY | Arthrobacter aurescens | 28 | 5.1 | |
| ISPph4 | IS1380 | Pelodictyon phaeoclathratiforme | 28 | 5.1 | |
| ISMyma7 | IS1380 | - | Mycobacterium marinum | 28 | 5.1 |
| ISAnsp3 | IS66 | Anaeromyxobacter sp. | 28 | 5.1 | |
| ISAli18 | ISL3 | Azospirillum lipoferum | 28 | 5.1 | |
| ISRhosp7 | IS110 | Rhodococcus sp. | 28 | 5.1 | |
| ISStac1 | IS110 | IS1111 | Streptomyces aculeolatus | 28 | 5.1 |
| ISSgr1 | IS110 | IS1111 | Streptomyces griseus | 28 | 5.1 |
| ISSam1 | IS110 | Streptomyces ambofaciens | 28 | 5.1 | |
| ISRssp1 | IS3 | IS407 | Roseovarius sp. | 28 | 5.1 |
| ISHha1 | IS3 | IS3 | Halorhodospira halophila | 28 | 5.1 |
| ISApu2 | IS4 | ISH8 | Aeromonas punctata | 28 | 5.1 |
| ISHma6 | IS5 | Haloarcula marismortui | 28 | 5.1 | |
| ISAac2 | IS5 | IS427 | Actinobacillus actinomycetemcomitans | 28 | 5.1 |
| IS110 | IS110 | - | Streptomyces coelicolor | 28 | 5.1 |
>ISStma17
Length = 1321
Score = 32.2 bits (16), Expect = 0.33
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 208 tgcttcgctgctcgtc 223
||||||||||||||||
Sbjct: 257 tgcttcgctgctcgtc 242
>ISArsp6
Length = 26712
Score = 32.2 bits (16), Expect = 0.33
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 206 attgcttcgctgctcg 221
||||||||||||||||
Sbjct: 5591 attgcttcgctgctcg 5576
>ISHwa29
Length = 1670
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 235 ccaagcggatctgaa 249
|||||||||||||||
Sbjct: 1349 ccaagcggatctgaa 1363
>ISMasp7
Length = 1661
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 197 catgctgacattgct 211
|||||||||||||||
Sbjct: 249 catgctgacattgct 263
>ISAnsp11
Length = 1510
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 216 tgctcgtcggcgcca 230
|||||||||||||||
Sbjct: 628 tgctcgtcggcgcca 614
>ISCausp2
Length = 7915
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 211 ttcgctgctcgtcgg 225
|||||||||||||||
Sbjct: 6546 ttcgctgctcgtcgg 6560
>ISStag1
Length = 889
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 221 gtcggcgccattgcc 235
|||||||||||||||
Sbjct: 270 gtcggcgccattgcc 256
>ISHla16
Length = 1836
Score = 28.2 bits (14), Expect = 5.1
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 139 cgatgcgcgacggggcgt 156
||||| ||||||||||||
Sbjct: 359 cgatgagcgacggggcgt 342
>ISPsp9
Length = 1718
Score = 28.2 bits (14), Expect = 5.1
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 113 cagcgtcagctggttggg 130
|||||||||||| |||||
Sbjct: 582 cagcgtcagctgtttggg 565
>ISNamo4
Length = 1069
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 161 gagcaggccgcgcc 174
||||||||||||||
Sbjct: 436 gagcaggccgcgcc 423
>ISAau5
Length = 3989
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 217 gctcgtcggcgcca 230
||||||||||||||
Sbjct: 3467 gctcgtcggcgcca 3454
>ISPph4
Length = 1763
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 192 atcagcatgctgac 205
||||||||||||||
Sbjct: 283 atcagcatgctgac 296
>ISMyma7
Length = 1694
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 144 cgcgacggggcgtg 157
||||||||||||||
Sbjct: 987 cgcgacggggcgtg 1000
>ISAnsp3
Length = 2518
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 135 tcgtcgatgcgcga 148
||||||||||||||
Sbjct: 2367 tcgtcgatgcgcga 2354
>ISAli18
Length = 1752
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 45 agcaggccttcgtc 58
||||||||||||||
Sbjct: 1382 agcaggccttcgtc 1395
>ISRhosp7
Length = 1455
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 159 gtgagcaggccgcg 172
||||||||||||||
Sbjct: 714 gtgagcaggccgcg 701
>ISStac1
Length = 1484
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 159 gtgagcaggccgcg 172
||||||||||||||
Sbjct: 752 gtgagcaggccgcg 739
>ISSgr1
Length = 1544
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 159 gtgagcaggccgcg 172
||||||||||||||
Sbjct: 752 gtgagcaggccgcg 739
>ISSam1
Length = 1489
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 159 gtgagcaggccgcg 172
||||||||||||||
Sbjct: 748 gtgagcaggccgcg 735
>ISRssp1
Length = 1253
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 38 gtccgccagcaggc 51
||||||||||||||
Sbjct: 283 gtccgccagcaggc 270
>ISHha1
Length = 1264
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 41 cgccagcaggcctt 54
||||||||||||||
Sbjct: 500 cgccagcaggcctt 513
>ISApu2
Length = 1388
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 109 caatcagcgtcagc 122
||||||||||||||
Sbjct: 1160 caatcagcgtcagc 1147
>ISHma6
Length = 1069
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 161 gagcaggccgcgcc 174
||||||||||||||
Sbjct: 436 gagcaggccgcgcc 423
>ISAac2
Length = 885
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 21 tctttcgagtacaa 34
||||||||||||||
Sbjct: 875 tctttcgagtacaa 862
>IS110
Length = 1558
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 159 gtgagcaggccgcg 172
||||||||||||||
Sbjct: 752 gtgagcaggccgcg 739
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_220_length_259_cov_1.2033_ID_5610
(259 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISPpu14 | IS66 | Pseudomonas putida | 36 | 0.021 | |
| ISAzs23 | IS3 | IS3 | Azospirillum sp. | 34 | 0.082 |
| ISRosp4 | IS66 | Roseobacter sp. | 32 | 0.33 | |
| IS285 | IS256 | - | Yersinia pestis | 32 | 0.33 |
| ISPa55 | IS110 | IS1111 | Pseudomonas aeruginosa | 30 | 1.3 |
| ISCef1 | IS1182 | Corynebacterium efficiens | 30 | 1.3 | |
| ISMch6 | IS110 | Methylobacterium chloromethanicum | 30 | 1.3 | |
| ISMsm10 | IS1380 | Mycobacterium smegmatis | 30 | 1.3 | |
| ISAzo22 | IS110 | Azoarcus sp. | 30 | 1.3 | |
| ISEc61 | IS5 | IS1031 | Escherichia coli | 28 | 5.1 |
| TnAs3 | Tn3 | Aeromonas salmonicida | 28 | 5.1 | |
| ISAba28 | IS66 | Acinetobacter baumannii | 28 | 5.1 | |
| ISSiac5 | ISLre2 | Singulisphaera acidiphila | 28 | 5.1 | |
| ISUnCu7 | ISKra4 | ISAzba1 | Uncultured bacterium | 28 | 5.1 |
| ISAmi2 | IS5 | ISL2 | Actinosynnema mirum | 28 | 5.1 |
| ISAcfe2 | IS1182 | Acidimicrobium ferrooxidans | 28 | 5.1 | |
| ISShes11 | Tn3 | Shewanella sp. | 28 | 5.1 | |
| ISAcl1 | IS30 | Arthrobacter chlorophenolicus | 28 | 5.1 | |
| ISBli5 | IS1380 | Brevibacterium linens | 28 | 5.1 | |
| ISMex21 | IS630 | Methylobacterium extorquens | 28 | 5.1 | |
| ISOan1 | ISAs1 | Octadecabacter antarcticus | 28 | 5.1 | |
| ISCARN43 | IS1595 | ISPna2 | Metagenomic data from CARNOULES | 28 | 5.1 |
| ISCARN34 | IS1380 | Metagenomic data from CARNOULES | 28 | 5.1 | |
| ISDge14 | IS701 | Deinococcus geothermalis | 28 | 5.1 | |
| ISDge12 | IS701 | Deinococcus geothermalis | 28 | 5.1 | |
| ISCro1 | IS66 | Citrobacter rodentium | 28 | 5.1 | |
| ISGme4 | IS21 | Geobacter metallireducens | 28 | 5.1 | |
| ISvEsV1_1 | IS4 | IS4 | Ectocarpus siliculosus | 28 | 5.1 |
| ISMmg4 | IS701 | Magnetospirillum magneticum | 28 | 5.1 | |
| ISBcen6 | IS3 | IS2 | Burkholderia cenocepacia | 28 | 5.1 |
| ISGsu6 | IS21 | Geobacter sulfurreducens | 28 | 5.1 | |
| ISRm14 | IS66 | - | Sinorhizobium meliloti | 28 | 5.1 |
| ISBugl1 | IS3 | IS2 | Burkholderia glumae | 28 | 5.1 |
| IS866 | IS66 | - | Agrobacterium tumefaciens | 28 | 5.1 |
| IS1417 | IS3 | IS2 | Burkholderia glumae | 28 | 5.1 |
| IS1404 | IS3 | IS407 | Xanthomonas campestris | 28 | 5.1 |
>ISPpu14
Length = 2383
Score = 36.2 bits (18), Expect = 0.021
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 156 ttaccgtcgagcaacatg 173
||||||||||||||||||
Sbjct: 1268 ttaccgtcgagcaacatg 1285
>ISAzs23
Length = 1596
Score = 34.2 bits (17), Expect = 0.082
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 114 tcgcccccggccacgcc 130
|||||||||||||||||
Sbjct: 677 tcgcccccggccacgcc 693
>ISRosp4
Length = 2709
Score = 32.2 bits (16), Expect = 0.33
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 127 cgccgggctgtccggc 142
||||||||||||||||
Sbjct: 2161 cgccgggctgtccggc 2176
>IS285
Length = 1318
Score = 32.2 bits (16), Expect = 0.33
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 85 ggccctgggacgacaa 100
||||||||||||||||
Sbjct: 966 ggccctgggacgacaa 981
>ISPa55
Length = 1543
Score = 30.2 bits (15), Expect = 1.3
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 158 accgtcgagcaacatgccc 176
|||||||||||||| ||||
Sbjct: 448 accgtcgagcaacaggccc 466
>ISCef1
Length = 1689
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 13 ccgtggccagcacca 27
|||||||||||||||
Sbjct: 1124 ccgtggccagcacca 1110
>ISMch6
Length = 1379
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 190 ccgcaatggcgccgc 204
|||||||||||||||
Sbjct: 1006 ccgcaatggcgccgc 1020
>ISMsm10
Length = 1661
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 170 catgccctcgcgcgc 184
|||||||||||||||
Sbjct: 1345 catgccctcgcgcgc 1359
>ISAzo22
Length = 1763
Score = 30.2 bits (15), Expect = 1.3
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 9 ccgcccgtggccagcacca 27
||||| |||||||||||||
Sbjct: 199 ccgccggtggccagcacca 181
>ISEc61
Length = 954
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 17 ggccagcaccagcg 30
||||||||||||||
Sbjct: 624 ggccagcaccagcg 611
>TnAs3
Length = 18735
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 74 gccgaaccactggc 87
||||||||||||||
Sbjct: 16279 gccgaaccactggc 16292
>ISAba28
Length = 2740
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 18 gccagcaccagcgt 31
||||||||||||||
Sbjct: 1416 gccagcaccagcgt 1429
>ISSiac5
Length = 1429
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 243 aacggcgagacgat 256
||||||||||||||
Sbjct: 569 aacggcgagacgat 582
>ISUnCu7
Length = 2273
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 186 gaaaccgcaatggc 199
||||||||||||||
Sbjct: 2230 gaaaccgcaatggc 2243
>ISAmi2
Length = 942
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 123 gccacgccgggctg 136
||||||||||||||
Sbjct: 659 gccacgccgggctg 672
>ISAcfe2
Length = 1771
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 221 ctgattgcgtgcca 234
||||||||||||||
Sbjct: 1388 ctgattgcgtgcca 1375
>ISShes11
Length = 7669
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 32 acgagccggattcg 45
||||||||||||||
Sbjct: 1697 acgagccggattcg 1684
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 74 gccgaaccactggc 87
||||||||||||||
Sbjct: 5213 gccgaaccactggc 5226
>ISAcl1
Length = 1341
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 17 ggccagcaccagcg 30
||||||||||||||
Sbjct: 584 ggccagcaccagcg 571
>ISBli5
Length = 1687
Score = 28.2 bits (14), Expect = 5.1
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 115 cgcccccggccacgccgg 132
||||| ||||||||||||
Sbjct: 175 cgccctcggccacgccgg 192
>ISMex21
Length = 1040
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 115 cgcccccggccacg 128
||||||||||||||
Sbjct: 126 cgcccccggccacg 113
>ISOan1
Length = 1245
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 178 cgcgcgccgaaacc 191
||||||||||||||
Sbjct: 934 cgcgcgccgaaacc 947
>ISCARN43
Length = 1086
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 121 cggccacgccgggc 134
||||||||||||||
Sbjct: 506 cggccacgccgggc 493
>ISCARN34
Length = 1714
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 11 gcccgtggccagca 24
||||||||||||||
Sbjct: 1037 gcccgtggccagca 1050
>ISDge14
Length = 1152
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 82 actggccctgggac 95
||||||||||||||
Sbjct: 745 actggccctgggac 758
>ISDge12
Length = 1145
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 82 actggccctgggac 95
||||||||||||||
Sbjct: 738 actggccctgggac 751
>ISCro1
Length = 2699
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 128 gccgggctgtccgg 141
||||||||||||||
Sbjct: 1926 gccgggctgtccgg 1913
>ISGme4
Length = 1976
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 19 ccagcaccagcgta 32
||||||||||||||
Sbjct: 1121 ccagcaccagcgta 1134
>ISvEsV1_1
Length = 3603
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 56 gaaactctcgccaa 69
||||||||||||||
Sbjct: 2581 gaaactctcgccaa 2568
>ISMmg4
Length = 1507
Score = 28.2 bits (14), Expect = 5.1
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 190 ccgcaatggcgccgcccg 207
|||||| |||||||||||
Sbjct: 175 ccgcaacggcgccgcccg 158
>ISBcen6
Length = 1335
Score = 28.2 bits (14), Expect = 5.1
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 55 cgaaactctcgccaacca 72
|||||||||||| |||||
Sbjct: 172 cgaaactctcgcgaacca 155
>ISGsu6
Length = 1975
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 19 ccagcaccagcgta 32
||||||||||||||
Sbjct: 1120 ccagcaccagcgta 1133
>ISRm14
Length = 2695
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 171 atgccctcgcgcgc 184
||||||||||||||
Sbjct: 286 atgccctcgcgcgc 273
>ISBugl1
Length = 1335
Score = 28.2 bits (14), Expect = 5.1
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 55 cgaaactctcgccaacca 72
|||||||||||| |||||
Sbjct: 173 cgaaactctcgcgaacca 156
>IS866
Length = 2716
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 127 cgccgggctgtccg 140
||||||||||||||
Sbjct: 2192 cgccgggctgtccg 2205
>IS1417
Length = 1335
Score = 28.2 bits (14), Expect = 5.1
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 55 cgaaactctcgccaacca 72
|||||||||||| |||||
Sbjct: 173 cgaaactctcgcgaacca 156
>IS1404
Length = 1203
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 22 gcaccagcgtacga 35
||||||||||||||
Sbjct: 359 gcaccagcgtacga 346
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_221_length_258_cov_1.20442_ID_5612
(258 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISMtsp13 | IS256 | Methylobacterium sp. | 32 | 0.32 | |
| TnAs3 | Tn3 | Aeromonas salmonicida | 30 | 1.3 | |
| ISNma18 | IS200/IS605 | IS1341 | Natrialba magadii | 30 | 1.3 |
| ISAzs21 | IS66 | Azospirillum sp. | 30 | 1.3 | |
| ISMno32 | IS1182 | Methylobacterium nodulans | 30 | 1.3 | |
| ISCARN11 | IS1595 | ISSod11 | Metagenomic data from CARNOULES | 30 | 1.3 |
| ISRhsp5 | IS66 | Rhodobacter sphaeroides | 30 | 1.3 | |
| ISMye1 | IS256 | ISC1250 | Metallosphaera yellowstonensis | 28 | 5.1 |
| ISGpr5 | IS5 | IS5 | Gamma proteobacterium | 28 | 5.1 |
| ISMno13 | IS66 | Methylobacterium nodulans | 28 | 5.1 | |
| ISPam4 | IS5 | IS427 | Paracoccus aminophilus | 28 | 5.1 |
| ISAnsp9 | ISAs1 | Anaeromyxobacter sp. | 28 | 5.1 | |
| ISMdi16 | IS3 | IS407 | Methylobacterium dichloromethanicum | 28 | 5.1 |
| ISAch1 | IS5 | IS5 | Achromobacter sp. | 28 | 5.1 |
| ISCARN95 | IS21 | Metagenomic data from CARNOULES | 28 | 5.1 | |
| ISAzo15 | IS66 | Azoarcus sp. | 28 | 5.1 | |
| ISMno4 | IS66 | ISBst12 | Methylobacterium nodulans | 28 | 5.1 |
| ISMno3 | IS66 | ISBst12 | Methylobacterium nodulans | 28 | 5.1 |
| ISNwi4 | IS1595 | ISNha5 | Nitrobacter winogradskyi | 28 | 5.1 |
| ISHne5 | IS110 | Hyphomonas neptunium | 28 | 5.1 | |
| ISKpn7 | IS21 | Klebsiella pneumoniae | 28 | 5.1 | |
| ISAzvi7 | IS4 | IS50 | Azotobacter vinelandii | 28 | 5.1 |
| ISMmy3 | IS3 | IS150 | Mycoplasma mycoides | 28 | 5.1 |
| ISPa10 | IS5 | IS5 | Pseudomonas aeruginosa | 28 | 5.1 |
>ISMtsp13
Length = 1428
Score = 32.2 bits (16), Expect = 0.32
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 108 gggctgctggagaaga 123
||||||||||||||||
Sbjct: 189 gggctgctggagaaga 204
>TnAs3
Length = 18735
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 86 cggcggccttcgtcg 100
|||||||||||||||
Sbjct: 14803 cggcggccttcgtcg 14817
>ISNma18
Length = 1531
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 85 acggcggccttcgtc 99
|||||||||||||||
Sbjct: 493 acggcggccttcgtc 479
>ISAzs21
Length = 2598
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 34 aagggctggactggc 48
|||||||||||||||
Sbjct: 796 aagggctggactggc 810
>ISMno32
Length = 1538
Score = 30.2 bits (15), Expect = 1.3
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 152 gggtggtaacgatggcctc 170
|||||| ||||||||||||
Sbjct: 979 gggtgggaacgatggcctc 961
>ISCARN11
Length = 1133
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 173 ggggtttccgccaaa 187
|||||||||||||||
Sbjct: 359 ggggtttccgccaaa 373
>ISRhsp5
Length = 2528
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 34 aagggctggactggc 48
|||||||||||||||
Sbjct: 789 aagggctggactggc 803
>ISMye1
Length = 1198
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 6 gagctgctcaggga 19
||||||||||||||
Sbjct: 413 gagctgctcaggga 426
>ISGpr5
Length = 1558
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 110 gctgctggagaaga 123
||||||||||||||
Sbjct: 629 gctgctggagaaga 642
>ISMno13
Length = 2459
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 34 aagggctggactgg 47
||||||||||||||
Sbjct: 797 aagggctggactgg 810
>ISPam4
Length = 865
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 164 tggcctccgggggt 177
||||||||||||||
Sbjct: 313 tggcctccgggggt 326
>ISAnsp9
Length = 1704
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 137 cgtcgtgatcgagc 150
||||||||||||||
Sbjct: 1150 cgtcgtgatcgagc 1163
>ISMdi16
Length = 1271
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 137 cgtcgtgatcgagc 150
||||||||||||||
Sbjct: 1072 cgtcgtgatcgagc 1085
>ISAch1
Length = 1192
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 109 ggctgctggagaag 122
||||||||||||||
Sbjct: 389 ggctgctggagaag 402
>ISCARN95
Length = 2610
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 35 agggctggactggc 48
||||||||||||||
Sbjct: 362 agggctggactggc 375
>ISAzo15
Length = 2441
Score = 28.2 bits (14), Expect = 5.1
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 200 gaacctggccgggatgat 217
|||| |||||||||||||
Sbjct: 1319 gaacttggccgggatgat 1302
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 104 gccggggctgctgg 117
||||||||||||||
Sbjct: 1421 gccggggctgctgg 1434
>ISMno4
Length = 1385
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 61 ccagcatcagcggc 74
||||||||||||||
Sbjct: 403 ccagcatcagcggc 416
>ISMno3
Length = 1364
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 202 acctggccgggatg 215
||||||||||||||
Sbjct: 1149 acctggccgggatg 1136
>ISNwi4
Length = 3671
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 86 cggcggccttcgtc 99
||||||||||||||
Sbjct: 353 cggcggccttcgtc 340
>ISHne5
Length = 1182
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 233 ttccggcgcggttc 246
||||||||||||||
Sbjct: 658 ttccggcgcggttc 645
>ISKpn7
Length = 1956
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 89 cggccttcgtcgcc 102
||||||||||||||
Sbjct: 502 cggccttcgtcgcc 515
>ISAzvi7
Length = 1450
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 100 gcctgccggggctg 113
||||||||||||||
Sbjct: 184 gcctgccggggctg 197
>ISMmy3
Length = 1442
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 25 tgtccggacaaggg 38
||||||||||||||
Sbjct: 25 tgtccggacaaggg 12
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 25 tgtccggacaaggg 38
||||||||||||||
Sbjct: 16 tgtccggacaaggg 29
>ISPa10
Length = 1193
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 111 ctgctggagaagaa 124
||||||||||||||
Sbjct: 393 ctgctggagaagaa 406
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_222_length_258_cov_0.80663_ID_5614
(258 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| Tn5403 | Tn3 | Klebsiella pneumoniae | 32 | 0.32 | |
| ISEc10 | IS21 | Escherichia coli | 32 | 0.32 | |
| ISTesp1 | IS3 | IS51 | Terrabacter sp. | 32 | 0.32 |
| ISNph28 | IS200/IS605 | IS1341 | Natronomonas pharaonis | 30 | 1.3 |
| ISMco4 | IS256 | Methanosaeta concilii | 30 | 1.3 | |
| ISMsi5 | IS3 | IS3 | Methylocella silvestris | 30 | 1.3 |
| IS621 | IS110 | Escherichia coli HS | 30 | 1.3 | |
| ISMsm1 | IS3 | IS51 | Mycobacterium smegmatis | 30 | 1.3 |
| ISCro4 | IS110 | Citrobacter rodentium | 30 | 1.3 | |
| ISTel1 | IS481 | Thermosynechococcus elongatus | 30 | 1.3 | |
| ISC796 | IS1 | Sulfolobus sp. | 30 | 1.3 | |
| ISAba4 | IS982 | Acinetobacter baumannii | 30 | 1.3 | |
| ISTph1 | ISLre2 | Thermacetogenium phaeum | 28 | 5.1 | |
| ISTni2 | IS481 | Thioalkalivibrio nitratireducens | 28 | 5.1 | |
| ISNha8 | IS5 | Nitrobacter hamburgensis | 28 | 5.1 | |
| ISNisp7 | IS5 | Nitrobacter sp. | 28 | 5.1 | |
| ISMra4 | IS3 | IS3 | Methylobacterium radiotolerans | 28 | 5.1 |
| ISCARN3 | IS21 | Metagenomic data from CARNOULES | 28 | 5.1 | |
| ISSba14 | Tn3 | Shewanella baltica | 28 | 5.1 | |
| ISDde3 | IS3 | IS3 | Desulfovibrio desulfuricans | 28 | 5.1 |
| ISAtu4 | IS3 | IS51 | Agrobacterium tumefaciens | 28 | 5.1 |
| ISRm16 | IS4 | IS4Sa | Sinorhizobium meliloti | 28 | 5.1 |
| IS999 | IS3 | IS51 | Mycobacterium avium | 28 | 5.1 |
| IS6120 | IS256 | - | Mycobacterium smegmatis | 28 | 5.1 |
>Tn5403
Length = 3663
Score = 32.2 bits (16), Expect = 0.32
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 150 gaagcgcatcagccgg 165
||||||||||||||||
Sbjct: 1004 gaagcgcatcagccgg 989
>ISEc10
Length = 2410
Score = 32.2 bits (16), Expect = 0.32
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 150 gaagcgcatcagccgg 165
||||||||||||||||
Sbjct: 1494 gaagcgcatcagccgg 1479
>ISTesp1
Length = 1353
Score = 32.2 bits (16), Expect = 0.32
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 153 gcgcatcagccgggcg 168
||||||||||||||||
Sbjct: 674 gcgcatcagccgggcg 659
>ISNph28
Length = 1390
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 244 agttgaccgatattc 258
|||||||||||||||
Sbjct: 965 agttgaccgatattc 979
>ISMco4
Length = 1334
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 83 tttgcatcatgatgg 97
|||||||||||||||
Sbjct: 1212 tttgcatcatgatgg 1226
>ISMsi5
Length = 1228
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 154 cgcatcagccgggcg 168
|||||||||||||||
Sbjct: 608 cgcatcagccgggcg 594
>IS621
Length = 1425
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 98 ccgggaaaaccggtc 112
|||||||||||||||
Sbjct: 209 ccgggaaaaccggtc 195
>ISMsm1
Length = 1345
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 153 gcgcatcagccgggc 167
|||||||||||||||
Sbjct: 666 gcgcatcagccgggc 652
>ISCro4
Length = 1295
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 98 ccgggaaaaccggtc 112
|||||||||||||||
Sbjct: 176 ccgggaaaaccggtc 162
>ISTel1
Length = 1101
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 224 cattatattcccaga 238
|||||||||||||||
Sbjct: 16 cattatattcccaga 30
>ISC796
Length = 796
Score = 30.2 bits (15), Expect = 1.3
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 113 agttgagggagaaggcttt 131
||||||||||| |||||||
Sbjct: 209 agttgagggaggaggcttt 227
>ISAba4
Length = 975
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 58 tcaacgtatcagaca 72
|||||||||||||||
Sbjct: 185 tcaacgtatcagaca 199
>ISTph1
Length = 1783
Score = 28.2 bits (14), Expect = 5.1
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 11 ggcattaaaagagccttt 28
||||||||||| ||||||
Sbjct: 1458 ggcattaaaagggccttt 1475
>ISTni2
Length = 3451
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 119 gggagaaggctttt 132
||||||||||||||
Sbjct: 789 gggagaaggctttt 802
>ISNha8
Length = 1288
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 192 agcgtcaggcaggc 205
||||||||||||||
Sbjct: 777 agcgtcaggcaggc 764
>ISNisp7
Length = 1276
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 192 agcgtcaggcaggc 205
||||||||||||||
Sbjct: 776 agcgtcaggcaggc 763
>ISMra4
Length = 1237
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 154 cgcatcagccgggc 167
||||||||||||||
Sbjct: 609 cgcatcagccgggc 596
>ISCARN3
Length = 2070
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 92 tgatggccgggaaa 105
||||||||||||||
Sbjct: 1387 tgatggccgggaaa 1374
>ISSba14
Length = 3815
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 103 aaaaccggtcagtt 116
||||||||||||||
Sbjct: 732 aaaaccggtcagtt 745
>ISDde3
Length = 1278
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 232 tcccagactttcag 245
||||||||||||||
Sbjct: 172 tcccagactttcag 159
>ISAtu4
Length = 1241
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 151 aagcgcatcagccg 164
||||||||||||||
Sbjct: 616 aagcgcatcagccg 603
>ISRm16
Length = 1299
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 152 agcgcatcagccgg 165
||||||||||||||
Sbjct: 356 agcgcatcagccgg 343
>IS999
Length = 1347
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 154 cgcatcagccgggc 167
||||||||||||||
Sbjct: 670 cgcatcagccgggc 657
>IS6120
Length = 1486
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 95 tggccgggaaaacc 108
||||||||||||||
Sbjct: 920 tggccgggaaaacc 907
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_223_length_258_cov_0.80663_ID_5616
(258 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISHasp1 | IS200/IS605 | IS1341 | Halobacterium sp. | 32 | 0.32 |
| ISCca7 | IS5 | IS5 | Candidatus Cardinium hertigii | 32 | 0.32 |
| ISEc32 | IS110 | Escherichia coli | 32 | 0.32 | |
| ISAeme23 | IS66 | ISBst12 | Aeromonas media | 28 | 5.1 |
| ISCbo10 | IS607 | Clostridium botulinum | 28 | 5.1 | |
| ISNamo22 | IS200/IS605 | IS1341 | Natronomonas moolapensis | 28 | 5.1 |
| ISAba25 | IS66 | Acinetobacter baumannii | 28 | 5.1 | |
| ISAcce1 | ISKra4 | ISKra4 | Acetivibrio cellulolyticus | 28 | 5.1 |
| ISHla9 | ISH3 | Halorubrum lacusprofundi | 28 | 5.1 | |
| ISRhsp8 | IS5 | IS903 | Rhodobacter sphaeroides | 28 | 5.1 |
| ISCth12 | IS21 | Clostridium thermocellum | 28 | 5.1 | |
| ISDha13 | IS200/IS605 | IS200 | Desulfitobacterium hafniense | 28 | 5.1 |
| ISAli11 | ISL3 | Azospirillum lipoferum | 28 | 5.1 | |
| ISAli4 | IS3 | IS51 | Azospirillum lipoferum | 28 | 5.1 |
| ISBse1 | IS1595 | ISPna2 | Bacillus selenitireducens | 28 | 5.1 |
| ISPpu20 | IS1182 | Pseudomonas putida | 28 | 5.1 | |
| ISAr1 | IS630 | - | Agrobacterium rhizogenes | 28 | 5.1 |
>ISHasp1
Length = 1601
Score = 32.2 bits (16), Expect = 0.32
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 20 cgtcgtcgtcaaactc 35
||||||||||||||||
Sbjct: 181 cgtcgtcgtcaaactc 196
>ISCca7
Length = 1284
Score = 32.2 bits (16), Expect = 0.32
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 103 agaaaaagaactgcgt 118
||||||||||||||||
Sbjct: 229 agaaaaagaactgcgt 244
>ISEc32
Length = 1180
Score = 32.2 bits (16), Expect = 0.32
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 15 tcgtccgtcgtcgtca 30
||||||||||||||||
Sbjct: 581 tcgtccgtcgtcgtca 596
>ISAeme23
Length = 1557
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 54 ctccatccgtctga 67
||||||||||||||
Sbjct: 1168 ctccatccgtctga 1155
>ISCbo10
Length = 2272
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 139 gattcttcagttat 152
||||||||||||||
Sbjct: 1927 gattcttcagttat 1914
>ISNamo22
Length = 1706
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 202 ggtcgggagcgatt 215
||||||||||||||
Sbjct: 741 ggtcgggagcgatt 754
>ISAba25
Length = 2491
Score = 28.2 bits (14), Expect = 5.1
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 74 cctcaatcacctcgcctg 91
|||||||||||| |||||
Sbjct: 1894 cctcaatcacctggcctg 1877
>ISAcce1
Length = 1967
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 141 ttcttcagttatca 154
||||||||||||||
Sbjct: 782 ttcttcagttatca 769
>ISHla9
Length = 1436
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 173 cgcagcgtttgatc 186
||||||||||||||
Sbjct: 1372 cgcagcgtttgatc 1385
>ISRhsp8
Length = 1054
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 56 ccatccgtctgacc 69
||||||||||||||
Sbjct: 65 ccatccgtctgacc 52
>ISCth12
Length = 2497
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 184 atctgatattgcag 197
||||||||||||||
Sbjct: 1683 atctgatattgcag 1696
>ISDha13
Length = 745
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 73 ccctcaatcacctc 86
||||||||||||||
Sbjct: 308 ccctcaatcacctc 295
>ISAli11
Length = 1739
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 4 ttgctgcgtcatcg 17
||||||||||||||
Sbjct: 1660 ttgctgcgtcatcg 1673
>ISAli4
Length = 1324
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 169 gccccgcagcgttt 182
||||||||||||||
Sbjct: 206 gccccgcagcgttt 193
>ISBse1
Length = 1635
Score = 28.2 bits (14), Expect = 5.1
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 2 ccttgctgcgtcatcgtc 19
|||| |||||||||||||
Sbjct: 170 ccttactgcgtcatcgtc 187
>ISPpu20
Length = 1598
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 28 tcaaactctatctt 41
||||||||||||||
Sbjct: 271 tcaaactctatctt 284
>ISAr1
Length = 1146
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 229 tcgtcgcactgacg 242
||||||||||||||
Sbjct: 356 tcgtcgcactgacg 369
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_224_length_258_cov_0.80663_ID_5618
(258 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISDge6 | IS5 | ISL2 | Deinococcus geothermalis | 34 | 0.082 |
| ISAnsp10 | IS630 | Anaeromyxobacter sp. | 32 | 0.32 | |
| ISAde2 | IS1182 | Anaeromyxobacter dehalogenans | 30 | 1.3 | |
| ISAZo16 | IS21 | Azoarcus sp. | 30 | 1.3 | |
| ISHne4 | IS110 | Hyphomonas neptunium | 30 | 1.3 | |
| IS1421 | IS5 | IS427 | Ralstonia solanacearum | 30 | 1.3 |
| ISPa60 | ISAs1 | Pseudomonas aeruginosa | 28 | 5.1 | |
| ISShdy2 | IS66 | Shigella dysenteriae | 28 | 5.1 | |
| ISNma19 | IS200/IS605 | IS1341 | Natrialba magadii | 28 | 5.1 |
| ISKpn25 | ISL3 | Klebsiella pneumoniae | 28 | 5.1 | |
| ISBugl2 | IS5 | IS427 | Burkholderia glumae | 28 | 5.1 |
| ISAzba6 | IS630 | Azospirillum brasilense | 28 | 5.1 | |
| ISMex16 | IS3 | IS150 | Methylobacterium extorquens | 28 | 5.1 |
| ISAfe4 | IS66 | Acidithiobacillus ferrooxidans | 28 | 5.1 | |
| ISAnsp3 | IS66 | Anaeromyxobacter sp. | 28 | 5.1 | |
| ISAli13 | IS21 | Azospirillum lipoferum | 28 | 5.1 | |
| ISCte4 | IS481 | Comamonas testosteroni | 28 | 5.1 | |
| ISEc10 | IS21 | Escherichia coli | 28 | 5.1 | |
| ISBlo3 | IS3 | Bifidobacterium longum | 28 | 5.1 | |
| ISS1Z | IS6 | - | Lactococcus lactis | 28 | 5.1 |
| ISS1X | IS6 | - | Lactococcus lactis | 28 | 5.1 |
| ISS1T | IS6 | - | Lactococcus lactis | 28 | 5.1 |
| ISS1S | IS6 | - | Lactococcus lactis | 28 | 5.1 |
| ISS1RS | IS6 | - | Lactococcus lactis | 28 | 5.1 |
| ISS1B | IS6 | - | Lactococcus lactis | 28 | 5.1 |
| ISS1A | IS6 | - | Lactococcus lactis | 28 | 5.1 |
| ISRso5 | IS630 | - | Ralstonia solanacearum | 28 | 5.1 |
| ISAni1 | IS481 | - | Arthrobacter nicotinovorans | 28 | 5.1 |
| IS946V | IS6 | - | Lactococcus lactis | 28 | 5.1 |
| IS5376 | IS21 | - | Bacillus stearothermophilus | 28 | 5.1 |
>ISDge6
Length = 1117
Score = 34.2 bits (17), Expect = 0.082
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 99 gcgcgctcgtcgtcgct 115
|||||||||||||||||
Sbjct: 154 gcgcgctcgtcgtcgct 170
>ISAnsp10
Length = 1185
Score = 32.2 bits (16), Expect = 0.32
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 100 cgcgctcgtcgtcgct 115
||||||||||||||||
Sbjct: 111 cgcgctcgtcgtcgct 96
>ISAde2
Length = 1498
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 12 agcgtgttcaggctg 26
|||||||||||||||
Sbjct: 646 agcgtgttcaggctg 660
>ISAZo16
Length = 2485
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 219 gattcgcctgtggcg 233
|||||||||||||||
Sbjct: 448 gattcgcctgtggcg 462
>ISHne4
Length = 1166
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 97 cggcgcgctcgtcgt 111
|||||||||||||||
Sbjct: 313 cggcgcgctcgtcgt 327
>IS1421
Length = 864
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 129 aggatgccgttgagc 143
|||||||||||||||
Sbjct: 180 aggatgccgttgagc 166
>ISPa60
Length = 1228
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 116 gaagcgatcgatga 129
||||||||||||||
Sbjct: 694 gaagcgatcgatga 707
>ISShdy2
Length = 2496
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 96 ccggcgcgctcgtc 109
||||||||||||||
Sbjct: 2118 ccggcgcgctcgtc 2105
>ISNma19
Length = 1576
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 113 gctgaagcgatcga 126
||||||||||||||
Sbjct: 1177 gctgaagcgatcga 1164
>ISKpn25
Length = 8154
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 56 gtcaccgaccgcaa 69
||||||||||||||
Sbjct: 4549 gtcaccgaccgcaa 4562
>ISBugl2
Length = 914
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 129 aggatgccgttgag 142
||||||||||||||
Sbjct: 218 aggatgccgttgag 205
>ISAzba6
Length = 1138
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 9 tccagcgtgttcag 22
||||||||||||||
Sbjct: 719 tccagcgtgttcag 706
>ISMex16
Length = 1511
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 185 cttgcccggcgagc 198
||||||||||||||
Sbjct: 1239 cttgcccggcgagc 1252
>ISAfe4
Length = 2477
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 34 cttcgatggcgtag 47
||||||||||||||
Sbjct: 1988 cttcgatggcgtag 1975
>ISAnsp3
Length = 2518
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 94 agccggcgcgctcg 107
||||||||||||||
Sbjct: 1847 agccggcgcgctcg 1834
>ISAli13
Length = 2756
Score = 28.2 bits (14), Expect = 5.1
Identities = 20/22 (90%)
Strand = Plus / Minus
Query: 7 gctccagcgtgttcaggctggt 28
||||||||||| ||| ||||||
Sbjct: 1321 gctccagcgtgatcacgctggt 1300
>ISCte4
Length = 1019
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 101 gcgctcgtcgtcgc 114
||||||||||||||
Sbjct: 646 gcgctcgtcgtcgc 633
>ISEc10
Length = 2410
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 38 gatggcgtagtagg 51
||||||||||||||
Sbjct: 1956 gatggcgtagtagg 1969
>ISBlo3
Length = 1480
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 192 ggcgagcaggcgcc 205
||||||||||||||
Sbjct: 1101 ggcgagcaggcgcc 1088
>ISS1Z
Length = 808
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 147 gtttccatgccctt 160
||||||||||||||
Sbjct: 657 gtttccatgccctt 644
>ISS1X
Length = 808
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 147 gtttccatgccctt 160
||||||||||||||
Sbjct: 152 gtttccatgccctt 165
>ISS1T
Length = 808
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 147 gtttccatgccctt 160
||||||||||||||
Sbjct: 657 gtttccatgccctt 644
>ISS1S
Length = 808
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 147 gtttccatgccctt 160
||||||||||||||
Sbjct: 657 gtttccatgccctt 644
>ISS1RS
Length = 808
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 147 gtttccatgccctt 160
||||||||||||||
Sbjct: 657 gtttccatgccctt 644
>ISS1B
Length = 808
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 147 gtttccatgccctt 160
||||||||||||||
Sbjct: 657 gtttccatgccctt 644
>ISS1A
Length = 807
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 147 gtttccatgccctt 160
||||||||||||||
Sbjct: 657 gtttccatgccctt 644
>ISRso5
Length = 1159
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 100 cgcgctcgtcgtcg 113
||||||||||||||
Sbjct: 354 cgcgctcgtcgtcg 341
>ISAni1
Length = 1075
Score = 28.2 bits (14), Expect = 5.1
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 9 tccagcgtgttcaggctg 26
|||||||||||| |||||
Sbjct: 776 tccagcgtgttctggctg 793
>IS946V
Length = 808
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 147 gtttccatgccctt 160
||||||||||||||
Sbjct: 657 gtttccatgccctt 644
>IS5376
Length = 2107
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 24 ctggtcggctcttc 37
||||||||||||||
Sbjct: 1729 ctggtcggctcttc 1716
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_225_length_258_cov_0.80663_ID_5620
(258 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISMex19 | IS5 | IS427 | Methylobacterium extorquens | 34 | 0.082 |
| ISMno25 | IS110 | IS1111 | Methylobacterium nodulans | 32 | 0.32 |
| ISHti9 | IS200/IS605 | IS1341 | Halorhabdus tiamatea | 30 | 1.3 |
| ISSm4 | ISL3 | Serratia marcescens | 30 | 1.3 | |
| ISUnCu14 | IS66 | Uncultured bacterium | 30 | 1.3 | |
| ISMex4 | IS1380 | Methylobacterium extorquens | 30 | 1.3 | |
| ISAzo17 | IS21 | Azoarcus sp. | 30 | 1.3 | |
| ISSod13 | IS481 | Shewanella oneidensis | 30 | 1.3 | |
| ISPsy3 | IS91 | - | Pseudomonas syringae | 30 | 1.3 |
| TnAs3 | Tn3 | Aeromonas salmonicida | 28 | 5.1 | |
| ISPa43 | Tn3 | Pseudomonas aeruginosa | 28 | 5.1 | |
| ISFsp13 | ISAzo13 | Frankia sp. | 28 | 5.1 | |
| ISFsp12 | ISAzo13 | Frankia sp. | 28 | 5.1 | |
| ISMpo7 | IS5 | IS427 | Methylobacterium populi | 28 | 5.1 |
| ISPfr21 | IS481 | Propionibacterium freudenreichii | 28 | 5.1 | |
| ISArsp6 | Tn3 | Arthrobacter sp. | 28 | 5.1 | |
| ISPosp7 | IS1380 | Polaromonas sp. | 28 | 5.1 | |
| ISAar2 | IS110 | Arthrobacter arilaitensis | 28 | 5.1 | |
| ISThsp19 | IS21 | Thiomonas sp. | 28 | 5.1 | |
| ISCARN107 | IS5 | IS5 | Metagenomic data from CARNOULES | 28 | 5.1 |
| ISVei5 | IS5 | IS5 | Verminephrobacter eiseniae | 28 | 5.1 |
| ISSen2 | IS5 | IS427 | Salmonella enterica | 28 | 5.1 |
| ISAli13 | IS21 | Azospirillum lipoferum | 28 | 5.1 | |
| ISBce15 | IS3 | IS150 | Bacillus cereus | 28 | 5.1 |
| ISHma5 | ISH6 | Haloarcula marismortui | 28 | 5.1 | |
| ISLxx2 | IS110 | Leifsonia xyli | 28 | 5.1 | |
| IS52 | IS5 | IS5 | Pseudomonas syringae | 28 | 5.1 |
| IS1415 | IS21 | - | Rhodococcus erythropolis | 28 | 5.1 |
>ISMex19
Length = 849
Score = 34.2 bits (17), Expect = 0.082
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 2 tcgagcgcatcggcgtc 18
|||||||||||||||||
Sbjct: 327 tcgagcgcatcggcgtc 311
>ISMno25
Length = 1518
Score = 32.2 bits (16), Expect = 0.32
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 67 cagttcggcatcgatc 82
||||||||||||||||
Sbjct: 442 cagttcggcatcgatc 427
>ISHti9
Length = 1587
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 11 tcggcgtcggtgacg 25
|||||||||||||||
Sbjct: 558 tcggcgtcggtgacg 572
>ISSm4
Length = 9109
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 67 cagttcggcatcgat 81
|||||||||||||||
Sbjct: 2109 cagttcggcatcgat 2095
>ISUnCu14
Length = 2442
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 233 ggggcggcaccgcgc 247
|||||||||||||||
Sbjct: 1702 ggggcggcaccgcgc 1716
>ISMex4
Length = 1615
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 120 ccagcgccgacagca 134
|||||||||||||||
Sbjct: 1508 ccagcgccgacagca 1522
>ISAzo17
Length = 2095
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 82 ctgcggccgggcgcc 96
|||||||||||||||
Sbjct: 1030 ctgcggccgggcgcc 1016
>ISSod13
Length = 1202
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 241 accgcgcacccaggc 255
|||||||||||||||
Sbjct: 583 accgcgcacccaggc 597
>ISPsy3
Length = 1507
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 49 ctccacgccccggcg 63
|||||||||||||||
Sbjct: 555 ctccacgccccggcg 541
>TnAs3
Length = 18735
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 4 gagcgcatcggcgt 17
||||||||||||||
Sbjct: 6031 gagcgcatcggcgt 6018
>ISPa43
Length = 19903
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 121 cagcgccgacagca 134
||||||||||||||
Sbjct: 12510 cagcgccgacagca 12497
>ISFsp13
Length = 1724
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 102 ccagcaccagccgg 115
||||||||||||||
Sbjct: 151 ccagcaccagccgg 138
>ISFsp12
Length = 1730
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 102 ccagcaccagccgg 115
||||||||||||||
Sbjct: 151 ccagcaccagccgg 138
>ISMpo7
Length = 848
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 83 tgcggccgggcgcc 96
||||||||||||||
Sbjct: 566 tgcggccgggcgcc 553
>ISPfr21
Length = 2632
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 111 gccggatgcccagc 124
||||||||||||||
Sbjct: 2410 gccggatgcccagc 2397
>ISArsp6
Length = 26712
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 194 ccgatcacgaaggt 207
||||||||||||||
Sbjct: 10589 ccgatcacgaaggt 10576
>ISPosp7
Length = 1612
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 118 gcccagcgccgaca 131
||||||||||||||
Sbjct: 1364 gcccagcgccgaca 1377
>ISAar2
Length = 1473
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 201 cgaaggtcttgccg 214
||||||||||||||
Sbjct: 1145 cgaaggtcttgccg 1132
>ISThsp19
Length = 2657
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 55 gccccggcgcgcca 68
||||||||||||||
Sbjct: 693 gccccggcgcgcca 680
>ISCARN107
Length = 1172
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 71 tcggcatcgatctg 84
||||||||||||||
Sbjct: 344 tcggcatcgatctg 357
>ISVei5
Length = 1620
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 115 gatgcccagcgccg 128
||||||||||||||
Sbjct: 1296 gatgcccagcgccg 1309
>ISSen2
Length = 846
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 166 ctcaccggcggcaa 179
||||||||||||||
Sbjct: 504 ctcaccggcggcaa 517
>ISAli13
Length = 2756
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 67 cagttcggcatcga 80
||||||||||||||
Sbjct: 1485 cagttcggcatcga 1472
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 201 cgaaggtcttgccg 214
||||||||||||||
Sbjct: 1950 cgaaggtcttgccg 1937
>ISBce15
Length = 1447
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 218 aaggcatgaatata 231
||||||||||||||
Sbjct: 589 aaggcatgaatata 602
>ISHma5
Length = 1449
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 164 tgctcaccggcggc 177
||||||||||||||
Sbjct: 340 tgctcaccggcggc 327
>ISLxx2
Length = 1427
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 237 cggcaccgcgcacc 250
||||||||||||||
Sbjct: 261 cggcaccgcgcacc 248
>IS52
Length = 1209
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 71 tcggcatcgatctg 84
||||||||||||||
Sbjct: 358 tcggcatcgatctg 371
>IS1415
Length = 2580
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 201 cgaaggtcttgccg 214
||||||||||||||
Sbjct: 1927 cgaaggtcttgccg 1914
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_226_length_258_cov_0.745856_ID_5622
(258 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISPa33 | IS1380 | Pseudomonas aeruginosa | 38 | 0.005 | |
| ISOan8 | IS256 | Octadecabacter antarcticus | 30 | 1.3 | |
| ISPst12 | IS5 | Pseudomonas stutzeri | 30 | 1.3 | |
| ISAar6 | IS256 | Arthrobacter arilaitensis | 30 | 1.3 | |
| ISThsp9 | Tn3 | Thiomonas sp. | 30 | 1.3 | |
| ISSpo2 | IS1380 | Silicibacter pomeroyi | 30 | 1.3 | |
| ISXc4 | Tn3 | - | Xanthomonas campestris | 30 | 1.3 |
| ISPpu2 | IS630 | - | Pseudomonas putida | 30 | 1.3 |
| TnAs3 | Tn3 | Aeromonas salmonicida | 28 | 5.1 | |
| ISPa56 | IS3 | IS2 | Pseudomonas aeruginosa | 28 | 5.1 |
| ISTdr1 | IS256 | Thiorhodococcus drewsii | 28 | 5.1 | |
| ISAzs17 | Tn3 | Azospirillum sp. | 28 | 5.1 | |
| ISGau4 | IS3 | IS407 | Gemmatimonas aurantiaca | 28 | 5.1 |
| ISGau7 | IS21 | Gemmatimonas aurantiaca | 28 | 5.1 | |
| ISPso1 | IS256 | Paracoccus solventivorans | 28 | 5.1 | |
| ISMlo5 | ISNCY | ISDol1 | Mesorhizobium loti | 28 | 5.1 |
| ISPhae1 | IS5 | IS5 | Paracoccus haeundaensis | 28 | 5.1 |
| ISTha2 | ISAs1 | Thauera sp. | 28 | 5.1 | |
| ISThsp3 | IS66 | Thiomonas sp. | 28 | 5.1 | |
| ISEc21 | IS110 | Escherichia coli | 28 | 5.1 | |
| ISAtu4 | IS3 | IS51 | Agrobacterium tumefaciens | 28 | 5.1 |
| ISMca6 | ISAs1 | Methylococcus capsulatus | 28 | 5.1 | |
| ISPsy13 | IS3 | IS3 | Pseudomonas syringae | 28 | 5.1 |
| ISSco2 | IS481 | Streptomyces coelicolor | 28 | 5.1 | |
| IS1311 | IS256 | - | Mycobacterium avium | 28 | 5.1 |
>ISPa33
Length = 1561
Score = 38.2 bits (19), Expect = 0.005
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 128 aatcgttcccgatcagcgtgatc 150
|||||||||||||| ||||||||
Sbjct: 242 aatcgttcccgatcggcgtgatc 264
>ISOan8
Length = 1387
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 244 atgggcgcggccctc 258
|||||||||||||||
Sbjct: 476 atgggcgcggccctc 490
>ISPst12
Length = 1331
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 106 tcgatggcgctgccc 120
|||||||||||||||
Sbjct: 950 tcgatggcgctgccc 936
>ISAar6
Length = 1519
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 174 ggatctgcaggtcga 188
|||||||||||||||
Sbjct: 408 ggatctgcaggtcga 394
>ISThsp9
Length = 6215
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 212 aggcgcgcatgccgc 226
|||||||||||||||
Sbjct: 3545 aggcgcgcatgccgc 3559
>ISSpo2
Length = 1664
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 12 cttccagcgcctcat 26
|||||||||||||||
Sbjct: 839 cttccagcgcctcat 825
>ISXc4
Length = 6938
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 212 aggcgcgcatgccgc 226
|||||||||||||||
Sbjct: 3550 aggcgcgcatgccgc 3564
>ISPpu2
Length = 1131
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 103 ggctcgatggcgctg 117
|||||||||||||||
Sbjct: 734 ggctcgatggcgctg 720
>TnAs3
Length = 18735
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 35 agcttctgtacgct 48
||||||||||||||
Sbjct: 1130 agcttctgtacgct 1117
>ISPa56
Length = 1359
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 199 accttcaagcgcga 212
||||||||||||||
Sbjct: 1144 accttcaagcgcga 1157
>ISTdr1
Length = 1384
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 196 aagaccttcaagcg 209
||||||||||||||
Sbjct: 125 aagaccttcaagcg 112
>ISAzs17
Length = 7252
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 105 ctcgatggcgctgc 118
||||||||||||||
Sbjct: 2379 ctcgatggcgctgc 2366
>ISGau4
Length = 1210
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 214 gcgcgcatgccgca 227
||||||||||||||
Sbjct: 404 gcgcgcatgccgca 417
>ISGau7
Length = 2510
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 57 gctgatcatgcgcc 70
||||||||||||||
Sbjct: 2225 gctgatcatgcgcc 2238
>ISPso1
Length = 1400
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 240 ggccatgggcgcgg 253
||||||||||||||
Sbjct: 506 ggccatgggcgcgg 519
>ISMlo5
Length = 1664
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 108 gatggcgctgccca 121
||||||||||||||
Sbjct: 683 gatggcgctgccca 670
>ISPhae1
Length = 1485
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 103 ggctcgatggcgct 116
||||||||||||||
Sbjct: 1251 ggctcgatggcgct 1238
>ISTha2
Length = 1268
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 213 ggcgcgcatgccgc 226
||||||||||||||
Sbjct: 200 ggcgcgcatgccgc 187
>ISThsp3
Length = 2455
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 107 cgatggcgctgccc 120
||||||||||||||
Sbjct: 1908 cgatggcgctgccc 1895
>ISEc21
Length = 1374
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 51 gcagttgctgatca 64
||||||||||||||
Sbjct: 1016 gcagttgctgatca 1029
>ISAtu4
Length = 1241
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 13 ttccagcgcctcat 26
||||||||||||||
Sbjct: 954 ttccagcgcctcat 967
>ISMca6
Length = 1180
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 15 ccagcgcctcatcg 28
||||||||||||||
Sbjct: 522 ccagcgcctcatcg 535
>ISPsy13
Length = 1232
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 202 ttcaagcgcgaggc 215
||||||||||||||
Sbjct: 97 ttcaagcgcgaggc 110
>ISSco2
Length = 1964
Score = 28.2 bits (14), Expect = 5.1
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 206 agcgcgaggcgcgcatgc 223
|||||||||||| |||||
Sbjct: 516 agcgcgaggcgcccatgc 533
>IS1311
Length = 1416
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 105 ctcgatggcgctgc 118
||||||||||||||
Sbjct: 842 ctcgatggcgctgc 829
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_227_length_258_cov_0.723757_ID_5624
(258 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISSar1 | IS5 | ISL2 | Salinispora arenicola | 34 | 0.082 |
| ISPa30 | IS66 | Pseudomonas aeruginosa | 32 | 0.32 | |
| ISSoc3 | IS200/IS605 | Synechococcus sp. | 32 | 0.32 | |
| ISAzo15 | IS66 | Azoarcus sp. | 32 | 0.32 | |
| ISRosp4 | IS66 | Roseobacter sp. | 32 | 0.32 | |
| ISLesp2 | ISKra4 | ISKra4 | Leptolyngbya sp. | 30 | 1.3 |
| ISRm20 | IS481 | Sinorhizobium meliloti | 30 | 1.3 | |
| ISArsp6 | Tn3 | Arthrobacter sp. | 30 | 1.3 | |
| ISMyma7 | IS1380 | - | Mycobacterium marinum | 30 | 1.3 |
| ISArch8 | IS1634 | Uncultured archaeon | 30 | 1.3 | |
| ISNch1 | IS200/IS605 | IS1341 | Natrialba chahannaoensis | 28 | 5.1 |
| ISNje1 | IS200/IS605 | IS1341 | Natronococcus jeotgali | 28 | 5.1 |
| ISHca1 | IS200/IS605 | IS1341 | Halorubrum californiensis | 28 | 5.1 |
| ISHko4 | IS200/IS605 | IS1341 | Halorubrum kocurii | 28 | 5.1 |
| ISHla22 | IS200/IS605 | IS1341 | Halorubrum lacusprofundi | 28 | 5.1 |
| ISAzs3 | IS1380 | Azospirillum sp. | 28 | 5.1 | |
| ISPna1 | IS630 | Polaromonas naphthalenivorans | 28 | 5.1 | |
| ISFsp14 | IS1380 | Frankia sp. | 28 | 5.1 | |
| ISMex4 | IS1380 | Methylobacterium extorquens | 28 | 5.1 | |
| ISAcma15 | IS630 | Acaryochloris marina | 28 | 5.1 | |
| ISThsp10 | IS21 | Thiomonas sp. | 28 | 5.1 | |
| ISCARN85 | IS5 | IS427 | Metagenomic data from CARNOULES | 28 | 5.1 |
| ISCARN20 | IS110 | Metagenomic data from CARNOULES | 28 | 5.1 | |
| ISAfe4 | IS66 | Acidithiobacillus ferrooxidans | 28 | 5.1 | |
| ISGob4 | IS66 | ISBst12 | Gemmata obscuriglobus | 28 | 5.1 |
| ISEnca1 | IS1380 | Enterococcus casseliflavus | 28 | 5.1 | |
| ISDge14 | IS701 | Deinococcus geothermalis | 28 | 5.1 | |
| ISRta1 | ISL3 | Ralstonia taiwanensis | 28 | 5.1 | |
| ISLve2 | IS5 | IS903 | Loktanella vestfoldensis | 28 | 5.1 |
| ISAzvi11 | IS481 | Azotobacter vinelandii | 28 | 5.1 | |
| ISTel1 | IS481 | Thermosynechococcus elongatus | 28 | 5.1 | |
| ISNmo3 | IS481 | Nitrococcus mobilis | 28 | 5.1 | |
| ISMlo4 | IS3 | IS51 | Mesorhizobium loti | 28 | 5.1 |
| ISAtu4 | IS3 | IS51 | Agrobacterium tumefaciens | 28 | 5.1 |
| ISFsp4 | IS200/IS605 | Frankia sp. | 28 | 5.1 | |
| ISPsy11 | IS3 | IS3 | Pseudomonas syringae | 28 | 5.1 |
| ISXc6 | IS5 | IS5 | Xanthomonas campestris | 28 | 5.1 |
| ISEcp1 | IS1380 | - | Escherichia coli | 28 | 5.1 |
| ISEc9 | IS1380 | - | Escherichia coli | 28 | 5.1 |
| IS1629 | ISAs1 | - | Streptomyces sp. | 28 | 5.1 |
>ISSar1
Length = 914
Score = 34.2 bits (17), Expect = 0.082
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 201 gtggcgacgccgatctc 217
|||||||||||||||||
Sbjct: 326 gtggcgacgccgatctc 310
>ISPa30
Length = 2436
Score = 32.2 bits (16), Expect = 0.32
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 58 gttggccatcgtccag 73
||||||||||||||||
Sbjct: 2157 gttggccatcgtccag 2142
>ISSoc3
Length = 1806
Score = 32.2 bits (16), Expect = 0.32
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 138 tcctccaccaccaaca 153
||||||||||||||||
Sbjct: 1405 tcctccaccaccaaca 1390
>ISAzo15
Length = 2441
Score = 32.2 bits (16), Expect = 0.32
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 32 gccaccctcaagcgcc 47
||||||||||||||||
Sbjct: 990 gccaccctcaagcgcc 1005
>ISRosp4
Length = 2709
Score = 32.2 bits (16), Expect = 0.32
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 45 gccgccaccgcctgtt 60
||||||||||||||||
Sbjct: 1064 gccgccaccgcctgtt 1049
>ISLesp2
Length = 1502
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 200 agtggcgacgccgat 214
|||||||||||||||
Sbjct: 371 agtggcgacgccgat 385
>ISRm20
Length = 1265
Score = 30.2 bits (15), Expect = 1.3
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 29 catgccaccctcaagcgcc 47
||||||| |||||||||||
Sbjct: 414 catgccatcctcaagcgcc 432
>ISArsp6
Length = 26712
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 44 cgccgccaccgcctg 58
|||||||||||||||
Sbjct: 16763 cgccgccaccgcctg 16749
>ISMyma7
Length = 1694
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 208 cgccgatctcatcac 222
|||||||||||||||
Sbjct: 1313 cgccgatctcatcac 1327
>ISArch8
Length = 1923
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 138 tcctccaccaccaac 152
|||||||||||||||
Sbjct: 1764 tcctccaccaccaac 1750
>ISNch1
Length = 1636
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 33 ccaccctcaagcgc 46
||||||||||||||
Sbjct: 1587 ccaccctcaagcgc 1600
>ISNje1
Length = 1597
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 33 ccaccctcaagcgc 46
||||||||||||||
Sbjct: 1548 ccaccctcaagcgc 1561
>ISHca1
Length = 1549
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 33 ccaccctcaagcgc 46
||||||||||||||
Sbjct: 1500 ccaccctcaagcgc 1513
>ISHko4
Length = 1517
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 33 ccaccctcaagcgc 46
||||||||||||||
Sbjct: 1466 ccaccctcaagcgc 1479
>ISHla22
Length = 1515
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 33 ccaccctcaagcgc 46
||||||||||||||
Sbjct: 1466 ccaccctcaagcgc 1479
>ISAzs3
Length = 1613
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 139 cctccaccaccaac 152
||||||||||||||
Sbjct: 1483 cctccaccaccaac 1496
>ISPna1
Length = 1179
Score = 28.2 bits (14), Expect = 5.1
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 104 caaggccttgatgacctt 121
|||||| |||||||||||
Sbjct: 140 caaggcattgatgacctt 123
>ISFsp14
Length = 1696
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 47 cgccaccgcctgtt 60
||||||||||||||
Sbjct: 1367 cgccaccgcctgtt 1380
>ISMex4
Length = 1615
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 160 cgctcaggctgccc 173
||||||||||||||
Sbjct: 233 cgctcaggctgccc 246
>ISAcma15
Length = 1083
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 33 ccaccctcaagcgc 46
||||||||||||||
Sbjct: 441 ccaccctcaagcgc 454
>ISThsp10
Length = 2501
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 95 ctggccgagcaagg 108
||||||||||||||
Sbjct: 1709 ctggccgagcaagg 1722
>ISCARN85
Length = 816
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 96 tggccgagcaaggc 109
||||||||||||||
Sbjct: 152 tggccgagcaaggc 165
>ISCARN20
Length = 1628
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 36 ccctcaagcgccgc 49
||||||||||||||
Sbjct: 1534 ccctcaagcgccgc 1547
>ISAfe4
Length = 2477
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 10 tcagcaccagatcg 23
||||||||||||||
Sbjct: 863 tcagcaccagatcg 850
>ISGob4
Length = 1576
Score = 28.2 bits (14), Expect = 5.1
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 41 aagcgccgccaccgcctg 58
|||||| |||||||||||
Sbjct: 610 aagcgcggccaccgcctg 593
>ISEnca1
Length = 1658
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 110 cttgatgaccttct 123
||||||||||||||
Sbjct: 615 cttgatgaccttct 602
>ISDge14
Length = 1152
Score = 28.2 bits (14), Expect = 5.1
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 236 ctggacctgaatacgaaa 253
||||||||||| ||||||
Sbjct: 174 ctggacctgaagacgaaa 191
>ISRta1
Length = 1303
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 45 gccgccaccgcctg 58
||||||||||||||
Sbjct: 453 gccgccaccgcctg 440
>ISLve2
Length = 1054
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 15 accagatcgacagc 28
||||||||||||||
Sbjct: 158 accagatcgacagc 145
>ISAzvi11
Length = 1221
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 66 tcgtccagcacggt 79
||||||||||||||
Sbjct: 546 tcgtccagcacggt 533
>ISTel1
Length = 1101
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 110 cttgatgaccttct 123
||||||||||||||
Sbjct: 360 cttgatgaccttct 373
>ISNmo3
Length = 1061
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 99 ccgagcaaggcctt 112
||||||||||||||
Sbjct: 470 ccgagcaaggcctt 483
>ISMlo4
Length = 1239
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 24 acagccatgccacc 37
||||||||||||||
Sbjct: 403 acagccatgccacc 390
>ISAtu4
Length = 1241
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 24 acagccatgccacc 37
||||||||||||||
Sbjct: 405 acagccatgccacc 392
>ISFsp4
Length = 1784
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 127 tgctcggctggtcc 140
||||||||||||||
Sbjct: 1273 tgctcggctggtcc 1286
>ISPsy11
Length = 1313
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 118 ccttctgattgctc 131
||||||||||||||
Sbjct: 348 ccttctgattgctc 335
>ISXc6
Length = 1500
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 103 gcaaggccttgatg 116
||||||||||||||
Sbjct: 36 gcaaggccttgatg 49
>ISEcp1
Length = 1656
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 110 cttgatgaccttct 123
||||||||||||||
Sbjct: 613 cttgatgaccttct 600
>ISEc9
Length = 1656
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 110 cttgatgaccttct 123
||||||||||||||
Sbjct: 613 cttgatgaccttct 600
>IS1629
Length = 1462
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 205 cgacgccgatctca 218
||||||||||||||
Sbjct: 817 cgacgccgatctca 830
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_228_length_258_cov_0.696133_ID_5626
(258 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISStsp1 | ISAzo13 | Streptomyces sp. | 32 | 0.32 | |
| ISBmu3 | IS21 | Burkholderia multivorans | 32 | 0.32 | |
| ISRtr5 | IS66 | Rhizobium tropici | 30 | 1.3 | |
| ISHvo3 | IS5 | ISH1 | Haloferax volcanii | 30 | 1.3 |
| ISFsp7 | IS5 | ISL2 | Frankia sp. | 30 | 1.3 |
| ISPfr2 | ISL3 | Propionibacterium freudenreichii | 30 | 1.3 | |
| ISMex39 | IS21 | Methylobacterium extorquens | 30 | 1.3 | |
| ISBma1 | ISL3 | - | Burkholderia mallei | 30 | 1.3 |
| IS1301 | IS5 | IS427 | Neisseria meningitidis | 30 | 1.3 |
| ISEc61 | IS5 | IS1031 | Escherichia coli | 28 | 5.1 |
| ISSna1 | ISNCY | ISDol1 | Streptomyces natalensis | 28 | 5.1 |
| TnXo19 | Tn3 | Xanthomonas oryzae | 28 | 5.1 | |
| TnAs3 | Tn3 | Aeromonas salmonicida | 28 | 5.1 | |
| TnAs2 | Tn3 | Aeromonas salmonicida | 28 | 5.1 | |
| ISPsp9 | IS1380 | Pseudomonas sp. | 28 | 5.1 | |
| ISMal1 | ISKra4 | ISAzba1 | Mesorhizobium alhagi | 28 | 5.1 |
| ISAzs20 | IS66 | Azospirillum sp. | 28 | 5.1 | |
| ISGeob7 | IS5 | IS427 | Geodermatophilus obscurus | 28 | 5.1 |
| ISRel11 | IS5 | IS427 | Rhizobium etli | 28 | 5.1 |
| ISRpa9 | IS5 | IS5 | Rhodopseudomonas palustris | 28 | 5.1 |
| ISRpa8 | IS5 | IS5 | Rhodopseudomonas palustris | 28 | 5.1 |
| ISMno33 | IS1182 | Methylobacterium nodulans | 28 | 5.1 | |
| ISMpo7 | IS5 | IS427 | Methylobacterium populi | 28 | 5.1 |
| ISMno30 | ISL3 | Methylobacterium nodulans | 28 | 5.1 | |
| ISMtsp8 | IS21 | Methylobacterium sp. | 28 | 5.1 | |
| ISNosp1 | IS1380 | Nocardioides sp. | 28 | 5.1 | |
| ISStr1 | IS1380 | Salinispora tropica | 28 | 5.1 | |
| ISMex38 | Tn3 | Methylobacterium extorquens | 28 | 5.1 | |
| ISMex24 | ISL3 | Methylobacterium extorquens | 28 | 5.1 | |
| ISMdi1 | IS630 | Methylobacterium dichloromethanicum | 28 | 5.1 | |
| ISStma11 | ISL3 | Stenotrophomonas maltophilia | 28 | 5.1 | |
| ISCARN15 | IS66 | Metagenomic data from CARNOULES | 28 | 5.1 | |
| ISGdi10 | IS481 | Gluconacetobacter diazotrophicus | 28 | 5.1 | |
| ISBad1 | IS21 | Bifidobacterium adolescentis | 28 | 5.1 | |
| ISRme9 | IS21 | Ralstonia metallidurans | 28 | 5.1 | |
| ISMsm8 | IS30 | Mycobacterium smegmatis | 28 | 5.1 | |
| ISMxa2 | IS3 | IS407 | Myxococcus xanthus | 28 | 5.1 |
| ISRle2 | IS30 | Rhizobium leguminosarum | 28 | 5.1 | |
| ISC1904 | IS607 | Sulfolobus solfataricus | 28 | 5.1 | |
| ISMhu5 | IS1634 | Methanospirillum hungatei | 28 | 5.1 | |
| ISNGR9 | IS5 | IS427 | Rhizobium sp | 28 | 5.1 |
>ISStsp1
Length = 1694
Score = 32.2 bits (16), Expect = 0.32
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 175 acggccagggccaggc 190
||||||||||||||||
Sbjct: 842 acggccagggccaggc 857
>ISBmu3
Length = 2697
Score = 32.2 bits (16), Expect = 0.32
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 137 caagctgatcaccgac 152
||||||||||||||||
Sbjct: 1156 caagctgatcaccgac 1171
>ISRtr5
Length = 2577
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 178 gccagggccaggcgg 192
|||||||||||||||
Sbjct: 228 gccagggccaggcgg 214
>ISHvo3
Length = 941
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 203 cctcgacacggccga 217
|||||||||||||||
Sbjct: 290 cctcgacacggccga 304
>ISFsp7
Length = 1041
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 179 ccagggccaggcggc 193
|||||||||||||||
Sbjct: 310 ccagggccaggcggc 324
>ISPfr2
Length = 1731
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 138 aagctgatcaccgac 152
|||||||||||||||
Sbjct: 1184 aagctgatcaccgac 1198
>ISMex39
Length = 2456
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 213 gccgagcgcatcgag 227
|||||||||||||||
Sbjct: 1135 gccgagcgcatcgag 1149
>ISBma1
Length = 1305
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 212 ggccgagcgcatcga 226
|||||||||||||||
Sbjct: 696 ggccgagcgcatcga 710
>IS1301
Length = 842
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 55 agaaccgcaataact 69
|||||||||||||||
Sbjct: 87 agaaccgcaataact 101
>ISEc61
Length = 954
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 156 atcccggccagcac 169
||||||||||||||
Sbjct: 629 atcccggccagcac 616
>ISSna1
Length = 1560
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 96 cgcggcttcggcac 109
||||||||||||||
Sbjct: 1189 cgcggcttcggcac 1202
>TnXo19
Length = 18767
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 243 ttctccagcgtgta 256
||||||||||||||
Sbjct: 13732 ttctccagcgtgta 13719
>TnAs3
Length = 18735
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 157 tcccggccagcacg 170
||||||||||||||
Sbjct: 3883 tcccggccagcacg 3870
>TnAs2
Length = 8650
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 163 ccagcacgccggac 176
||||||||||||||
Sbjct: 2845 ccagcacgccggac 2858
>ISPsp9
Length = 1718
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 188 ggcggcgaccttca 201
||||||||||||||
Sbjct: 1377 ggcggcgaccttca 1364
>ISMal1
Length = 2308
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 95 gcgcggcttcggca 108
||||||||||||||
Sbjct: 1174 gcgcggcttcggca 1187
>ISAzs20
Length = 2811
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 210 acggccgagcgcat 223
||||||||||||||
Sbjct: 1346 acggccgagcgcat 1359
>ISGeob7
Length = 883
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 148 ccgacggcatcccg 161
||||||||||||||
Sbjct: 483 ccgacggcatcccg 496
>ISRel11
Length = 862
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 213 gccgagcgcatcga 226
||||||||||||||
Sbjct: 495 gccgagcgcatcga 482
>ISRpa9
Length = 1539
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 90 tcgtcgcgcggctt 103
||||||||||||||
Sbjct: 192 tcgtcgcgcggctt 179
>ISRpa8
Length = 1540
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 90 tcgtcgcgcggctt 103
||||||||||||||
Sbjct: 193 tcgtcgcgcggctt 180
>ISMno33
Length = 1767
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 113 tgcggccttcgggg 126
||||||||||||||
Sbjct: 1314 tgcggccttcgggg 1301
>ISMpo7
Length = 848
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 191 ggcgaccttcaacc 204
||||||||||||||
Sbjct: 721 ggcgaccttcaacc 734
>ISMno30
Length = 1773
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 169 cgccggacggccag 182
||||||||||||||
Sbjct: 282 cgccggacggccag 269
>ISMtsp8
Length = 2371
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 176 cggccagggccagg 189
||||||||||||||
Sbjct: 1728 cggccagggccagg 1715
>ISNosp1
Length = 1678
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 156 atcccggccagcac 169
||||||||||||||
Sbjct: 722 atcccggccagcac 709
>ISStr1
Length = 1664
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 155 catcccggccagca 168
||||||||||||||
Sbjct: 1532 catcccggccagca 1545
>ISMex38
Length = 3841
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 211 cggccgagcgcatc 224
||||||||||||||
Sbjct: 1541 cggccgagcgcatc 1554
>ISMex24
Length = 1677
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 211 cggccgagcgcatc 224
||||||||||||||
Sbjct: 891 cggccgagcgcatc 904
>ISMdi1
Length = 1058
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 215 cgagcgcatcgagg 228
||||||||||||||
Sbjct: 814 cgagcgcatcgagg 827
>ISStma11
Length = 4621
Score = 28.2 bits (14), Expect = 5.1
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 199 tcaacctcgacacggccg 216
||||||||||| ||||||
Sbjct: 2144 tcaacctcgacgcggccg 2127
>ISCARN15
Length = 2427
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 211 cggccgagcgcatc 224
||||||||||||||
Sbjct: 1724 cggccgagcgcatc 1711
>ISGdi10
Length = 1229
Score = 28.2 bits (14), Expect = 5.1
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 120 ttcggggtgcgcggcatc 137
|||||||||||| |||||
Sbjct: 427 ttcggggtgcgcagcatc 444
>ISBad1
Length = 2525
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 160 cggccagcacgccg 173
||||||||||||||
Sbjct: 1804 cggccagcacgccg 1791
>ISRme9
Length = 2688
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 138 aagctgatcaccga 151
||||||||||||||
Sbjct: 128 aagctgatcaccga 115
>ISMsm8
Length = 1457
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 222 atcgaggtgttgcg 235
||||||||||||||
Sbjct: 34 atcgaggtgttgcg 21
>ISMxa2
Length = 1244
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 32 gggcgtgcccgggc 45
||||||||||||||
Sbjct: 512 gggcgtgcccgggc 499
>ISRle2
Length = 1116
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 91 cgtcgcgcggcttc 104
||||||||||||||
Sbjct: 534 cgtcgcgcggcttc 521
>ISC1904
Length = 1903
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 61 gcaataactacgcg 74
||||||||||||||
Sbjct: 426 gcaataactacgcg 413
>ISMhu5
Length = 1719
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 48 gtgattcagaaccg 61
||||||||||||||
Sbjct: 1319 gtgattcagaaccg 1306
>ISNGR9
Length = 857
Score = 28.2 bits (14), Expect = 5.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 212 ggccgagcgcatcg 225
||||||||||||||
Sbjct: 492 ggccgagcgcatcg 479
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_229_length_257_cov_0.694444_ID_5628
(257 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISAs21 | IS66 | ISBst12 | Aeromonas salmonicida | 34 | 0.082 |
| ISRop2 | ISAzo13 | Rhodococcus opacus | 34 | 0.082 | |
| ISHaha4 | IS3 | IS150 | Halobacillus halophilus | 32 | 0.32 |
| ISPpa7 | IS66 | Paracoccus pantotrophus | 32 | 0.32 | |
| ISMno34 | IS6 | Methylobacterium nodulans | 32 | 0.32 | |
| ISMno10 | IS1182 | Methylobacterium nodulans | 32 | 0.32 | |
| ISMsm5 | IS630 | Mycobacterium smegmatis | 32 | 0.32 | |
| ISFsp4 | IS200/IS605 | Frankia sp. | 32 | 0.32 | |
| ISRba6 | IS3 | IS3 | Rhodopirellula baltica | 30 | 1.3 |
| ISGrh1 | ISNCY | ISDol1 | Gordonia rhizosphera | 28 | 5.0 |
| ISAs28 | IS21 | Aeromonas salmonicida | 28 | 5.0 | |
| ISAs27 | IS21 | Aeromonas salmonicida | 28 | 5.0 | |
| ISTco4 | ISLre2 | Thermobacillus composti | 28 | 5.0 | |
| ISRba9 | IS256 | Rhodopirellula baltica | 28 | 5.0 | |
| ISPa43 | Tn3 | Pseudomonas aeruginosa | 28 | 5.0 | |
| ISRce2 | IS1182 | Rhodospirillum centenum | 28 | 5.0 | |
| ISVsp15 | ISL3 | Verrucomicrobium spinosum | 28 | 5.0 | |
| ISNha6 | IS5 | IS5 | Nitrobacter hamburgensis | 28 | 5.0 |
| ISStsp2 | ISAzo13 | Streptomyces sp. | 28 | 5.0 | |
| ISArsp6 | Tn3 | Arthrobacter sp. | 28 | 5.0 | |
| ISThsp16 | IS1182 | Thiomonas sp. | 28 | 5.0 | |
| ISPa27 | IS256 | Pseudomonas aeruginosa | 28 | 5.0 | |
| ISMno1 | ISAs1 | Methylobacterium nodulans | 28 | 5.0 | |
| ISEc20 | IS110 | Escherichia coli | 28 | 5.0 | |
| ISApu2 | IS4 | ISH8 | Aeromonas punctata | 28 | 5.0 |
| ISSfl4 | IS110 | - | Shigella flexneri | 28 | 5.0 |
| ISPa42 | Tn3 | Pseudomonas aeruginosa | 28 | 5.0 | |
| IS2000 | IS5 | IS5 | Pseudomonas aeruginosa | 28 | 5.0 |
| IS1474 | IS21 | - | Pseudomonas alcaligenes | 28 | 5.0 |
>ISAs21
Length = 1530
Score = 34.2 bits (17), Expect = 0.082
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 112 cagcaccaactccttcgggaa 132
|||||||||||||| ||||||
Sbjct: 1504 cagcaccaactcctccgggaa 1484
Score = 28.2 bits (14), Expect = 5.0
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 200 atcgccgccacgtagcgc 217
||||||||||||| ||||
Sbjct: 1014 atcgccgccacgttgcgc 997
>ISRop2
Length = 2171
Score = 34.2 bits (17), Expect = 0.082
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 70 ggcattgccgatggtgc 86
|||||||||||||||||
Sbjct: 2022 ggcattgccgatggtgc 2006
>ISHaha4
Length = 1271
Score = 32.2 bits (16), Expect = 0.32
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 51 ctttccccgccagcga 66
||||||||||||||||
Sbjct: 497 ctttccccgccagcga 482
>ISPpa7
Length = 2731
Score = 32.2 bits (16), Expect = 0.32
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 194 gagaagatcgccgcca 209
||||||||||||||||
Sbjct: 1270 gagaagatcgccgcca 1285
>ISMno34
Length = 889
Score = 32.2 bits (16), Expect = 0.32
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 25 caggcccgcctcgcgg 40
||||||||||||||||
Sbjct: 580 caggcccgcctcgcgg 565
>ISMno10
Length = 1749
Score = 32.2 bits (16), Expect = 0.32
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 61 cagcgacaaggcattg 76
||||||||||||||||
Sbjct: 1523 cagcgacaaggcattg 1538
>ISMsm5
Length = 1103
Score = 32.2 bits (16), Expect = 0.32
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 102 cggccaccgccagcac 117
||||||||||||||||
Sbjct: 165 cggccaccgccagcac 150
>ISFsp4
Length = 1784
Score = 32.2 bits (16), Expect = 0.32
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 95 gccagcccggccaccgccag 114
||||||||||| ||||||||
Sbjct: 1335 gccagcccggctaccgccag 1316
>ISRba6
Length = 1309
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 141 acaacgcaccgatgg 155
|||||||||||||||
Sbjct: 1033 acaacgcaccgatgg 1047
>ISGrh1
Length = 1673
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 92 aaggccagcccggc 105
||||||||||||||
Sbjct: 1326 aaggccagcccggc 1339
>ISAs28
Length = 2626
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 86 cccagcaaggccag 99
||||||||||||||
Sbjct: 1571 cccagcaaggccag 1558
>ISAs27
Length = 2628
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 86 cccagcaaggccag 99
||||||||||||||
Sbjct: 1571 cccagcaaggccag 1558
>ISTco4
Length = 1577
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 182 gcaaagccgcccga 195
||||||||||||||
Sbjct: 1409 gcaaagccgcccga 1422
>ISRba9
Length = 1450
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 130 gaaggccgcaaaca 143
||||||||||||||
Sbjct: 674 gaaggccgcaaaca 687
>ISPa43
Length = 19903
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 99 gcccggccaccgcc 112
||||||||||||||
Sbjct: 8529 gcccggccaccgcc 8516
>ISRce2
Length = 1528
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 186 agccgcccgagaag 199
||||||||||||||
Sbjct: 643 agccgcccgagaag 656
>ISVsp15
Length = 1302
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 130 gaaggccgcaaaca 143
||||||||||||||
Sbjct: 987 gaaggccgcaaaca 974
>ISNha6
Length = 1547
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 151 gatggtcgcgccga 164
||||||||||||||
Sbjct: 1183 gatggtcgcgccga 1170
>ISStsp2
Length = 1752
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 215 cgctttgccgggtc 228
||||||||||||||
Sbjct: 737 cgctttgccgggtc 724
>ISArsp6
Length = 26712
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 92 aaggccagcccggc 105
||||||||||||||
Sbjct: 12061 aaggccagcccggc 12048
>ISThsp16
Length = 1602
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 170 cccagcagcaccgc 183
||||||||||||||
Sbjct: 268 cccagcagcaccgc 255
>ISPa27
Length = 1361
Score = 28.2 bits (14), Expect = 5.0
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 81 tggtgcccagcaaggcca 98
|||||| |||||||||||
Sbjct: 615 tggtgcgcagcaaggcca 632
>ISMno1
Length = 1218
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 105 ccaccgccagcacc 118
||||||||||||||
Sbjct: 871 ccaccgccagcacc 858
>ISEc20
Length = 1459
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 143 aacgcaccgatggt 156
||||||||||||||
Sbjct: 449 aacgcaccgatggt 436
>ISApu2
Length = 1388
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 87 ccagcaaggccagc 100
||||||||||||||
Sbjct: 1130 ccagcaaggccagc 1117
>ISSfl4
Length = 1451
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 143 aacgcaccgatggt 156
||||||||||||||
Sbjct: 449 aacgcaccgatggt 436
>ISPa42
Length = 16941
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 38 cgggtgtcatcccc 51
||||||||||||||
Sbjct: 10566 cgggtgtcatcccc 10553
>IS2000
Length = 1186
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 102 cggccaccgccagc 115
||||||||||||||
Sbjct: 238 cggccaccgccagc 225
>IS1474
Length = 2633
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 96 ccagcccggccacc 109
||||||||||||||
Sbjct: 380 ccagcccggccacc 367
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_230_length_256_cov_0.815642_ID_5630
(256 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISShsp2 | IS1182 | Sphingomonas sp. | 30 | 1.3 | |
| ISAli13 | IS21 | Azospirillum lipoferum | 30 | 1.3 | |
| ISPsme1 | IS30 | Pseudomonas mendocina | 28 | 5.0 | |
| ISPa36 | IS21 | Pseudomonas aeruginosa | 28 | 5.0 | |
| ISRso21 | ISL3 | Ralstonia solanacearum | 28 | 5.0 | |
| ISBuce2 | IS5 | Burkholderia cepacia | 28 | 5.0 | |
| ISRssp11 | IS5 | Roseovarius sp. | 28 | 5.0 | |
| ISMpo8 | IS5 | IS427 | Methylobacterium populi | 28 | 5.0 |
| ISBf3 | IS1182 | Bacteroides fragilis YCH46 plasmid pBFY46 | 28 | 5.0 | |
| ISVme1 | IS66 | Vibrio metschnikovii | 28 | 5.0 | |
| ISSba13 | IS3 | IS3 | Shewanella baltica | 28 | 5.0 |
| ISSpu6 | IS3 | IS3 | Shewanella putrefaciens | 28 | 5.0 |
| ISSme2 | IS21 | Sinorhizobium medicae | 28 | 5.0 | |
| ISGur5 | IS3 | IS3 | Geobacter uraniireducens | 28 | 5.0 |
| ISRm13 | IS5 | IS5 | Sinorhizobium meliloti | 28 | 5.0 |
>ISShsp2
Length = 1526
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 196 gcgccgccgaaaacg 210
|||||||||||||||
Sbjct: 646 gcgccgccgaaaacg 632
>ISAli13
Length = 2756
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 156 gcaggcgcggcgggc 170
|||||||||||||||
Sbjct: 1503 gcaggcgcggcgggc 1489
>ISPsme1
Length = 1064
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 3 gcgctcggttatcg 16
||||||||||||||
Sbjct: 578 gcgctcggttatcg 565
>ISPa36
Length = 2468
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 32 ttcgcacggcacgc 45
||||||||||||||
Sbjct: 1127 ttcgcacggcacgc 1114
>ISRso21
Length = 2032
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 132 gttcgaccgtcgca 145
||||||||||||||
Sbjct: 242 gttcgaccgtcgca 229
>ISBuce2
Length = 1345
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 56 gccatccatcttca 69
||||||||||||||
Sbjct: 223 gccatccatcttca 210
>ISRssp11
Length = 1356
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 130 gcgttcgaccgtcg 143
||||||||||||||
Sbjct: 738 gcgttcgaccgtcg 725
>ISMpo8
Length = 849
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 91 agaaggtcgcctct 104
||||||||||||||
Sbjct: 732 agaaggtcgcctct 719
>ISBf3
Length = 1845
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 82 tgcgcaaaaagaag 95
||||||||||||||
Sbjct: 794 tgcgcaaaaagaag 807
>ISVme1
Length = 2372
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 229 agagcctgtaacca 242
||||||||||||||
Sbjct: 375 agagcctgtaacca 362
>ISSba13
Length = 1670
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 88 aaaagaaggtcgcc 101
||||||||||||||
Sbjct: 213 aaaagaaggtcgcc 226
>ISSpu6
Length = 1670
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 88 aaaagaaggtcgcc 101
||||||||||||||
Sbjct: 213 aaaagaaggtcgcc 226
>ISSme2
Length = 2219
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 125 gcagtgcgttcgac 138
||||||||||||||
Sbjct: 288 gcagtgcgttcgac 301
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 72 ttcgggcaattgcg 85
||||||||||||||
Sbjct: 1034 ttcgggcaattgcg 1047
>ISGur5
Length = 1760
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 139 cgtcgcaatggaat 152
||||||||||||||
Sbjct: 452 cgtcgcaatggaat 465
>ISRm13
Length = 1550
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 14 tcggccgcaccatt 27
||||||||||||||
Sbjct: 850 tcggccgcaccatt 863
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_231_length_256_cov_0.815642_ID_5632
(256 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISGsu7 | IS3 | Geobacter sulfurreducens | 30 | 1.3 | |
| TnAs3 | Tn3 | Aeromonas salmonicida | 28 | 5.0 | |
| ISAeme19 | ISL3 | Aeromonas media | 28 | 5.0 | |
| ISPa40 | Tn3 | Pseudomonas aeruginosa | 28 | 5.0 | |
| ISPa38 | Tn3 | Pseudomonas aeruginosa | 28 | 5.0 | |
| ISAzs29 | Tn3 | Azospirillum sp. | 28 | 5.0 | |
| ISShes11 | Tn3 | Shewanella sp. | 28 | 5.0 | |
| ISAzo18 | IS3 | IS150 | Azoarcus sp. | 28 | 5.0 |
| ISDds5 | IS982 | Deinococcus deserti | 28 | 5.0 | |
| ISDds4 | IS982 | Deinococcus deserti | 28 | 5.0 | |
| ISCwa4 | IS66 | ISBst12 | Crocosphaera watsonii | 28 | 5.0 |
| ISMmg5 | IS1595 | ISSod11 | Magnetospirillum magnetotacticum | 28 | 5.0 |
| ISBcen21 | IS3 | IS51 | Burkholderia cenocepacia | 28 | 5.0 |
| ISMbu4 | ISL3 | Methanococcoides burtonii | 28 | 5.0 | |
| IS222 | IS3 | IS3 | Pseudomonas aeruginosa | 28 | 5.0 |
| IS1296 | IS3 | IS150 | Mycoplasma mycoides | 28 | 5.0 |
>ISGsu7
Length = 1351
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 57 atgcgcttgaaggct 71
|||||||||||||||
Sbjct: 343 atgcgcttgaaggct 329
>TnAs3
Length = 18735
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 1 catcaacctgaccg 14
||||||||||||||
Sbjct: 18612 catcaacctgaccg 18625
>ISAeme19
Length = 1304
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 198 ttgatcttgttgtt 211
||||||||||||||
Sbjct: 1213 ttgatcttgttgtt 1200
>ISPa40
Length = 6592
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 1 catcaacctgaccg 14
||||||||||||||
Sbjct: 6469 catcaacctgaccg 6482
>ISPa38
Length = 6455
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 1 catcaacctgaccg 14
||||||||||||||
Sbjct: 6332 catcaacctgaccg 6345
>ISAzs29
Length = 3897
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 1 catcaacctgaccg 14
||||||||||||||
Sbjct: 3743 catcaacctgaccg 3756
>ISShes11
Length = 7669
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 1 catcaacctgaccg 14
||||||||||||||
Sbjct: 7546 catcaacctgaccg 7559
>ISAzo18
Length = 1471
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 157 atgccagttcacca 170
||||||||||||||
Sbjct: 932 atgccagttcacca 945
>ISDds5
Length = 845
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 82 cgactccattttta 95
||||||||||||||
Sbjct: 62 cgactccattttta 49
>ISDds4
Length = 845
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 82 cgactccattttta 95
||||||||||||||
Sbjct: 62 cgactccattttta 49
>ISCwa4
Length = 1870
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 65 gaaggcttttttag 78
||||||||||||||
Sbjct: 344 gaaggcttttttag 331
>ISMmg5
Length = 1101
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 7 cctgaccgttggca 20
||||||||||||||
Sbjct: 284 cctgaccgttggca 297
>ISBcen21
Length = 1231
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 53 ggtcatgcgcttga 66
||||||||||||||
Sbjct: 285 ggtcatgcgcttga 272
>ISMbu4
Length = 1274
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 198 ttgatcttgttgtt 211
||||||||||||||
Sbjct: 1166 ttgatcttgttgtt 1153
>IS222
Length = 1236
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 70 cttttttaggatcg 83
||||||||||||||
Sbjct: 329 cttttttaggatcg 316
>IS1296
Length = 1485
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 88 catttttagcaaat 101
||||||||||||||
Sbjct: 742 catttttagcaaat 755
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_232_length_256_cov_0.815642_ID_5634
(256 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISRle3 | IS66 | Rhizobium leguminosarum | 36 | 0.021 | |
| ISRl1 | IS66 | - | Rhizobium leguminosarum | 36 | 0.021 |
| ISPa38 | Tn3 | Pseudomonas aeruginosa | 30 | 1.3 | |
| ISRm17 | ISNCY | ISDol1 | Sinorhizobium meliloti | 30 | 1.3 |
| ISMlo5 | ISNCY | ISDol1 | Mesorhizobium loti | 30 | 1.3 |
| ISMch4 | IS110 | IS1111 | Methylobacterium chloromethanicum | 30 | 1.3 |
| ISGur1 | IS4 | ISPepr1 | Geobacter uraniumreducens | 30 | 1.3 |
| IS1372 | IS3 | IS51 | Streptomyces lividans | 30 | 1.3 |
| ISHti6 | IS630 | Halorhabdus tiamatea | 28 | 5.0 | |
| TnShfr1 | Tn3 | Shewanella frigidimarina | 28 | 5.0 | |
| ISNha10 | IS256 | Nitrobacter hamburgensis | 28 | 5.0 | |
| ISTni2 | IS481 | Thioalkalivibrio nitratireducens | 28 | 5.0 | |
| ISMrh1 | IS256 | Mycobacterium rhodesiae | 28 | 5.0 | |
| ISAzs19 | IS256 | Azospirillum sp. | 28 | 5.0 | |
| ISGeob6 | IS5 | IS427 | Geodermatophilus obscurus | 28 | 5.0 |
| ISRel19 | IS66 | Rhizobium etli | 28 | 5.0 | |
| ISPfr5 | IS481 | Propionibacterium freudenreichii | 28 | 5.0 | |
| ISThsp16 | IS1182 | Thiomonas sp. | 28 | 5.0 | |
| ISYps3 | Tn3 | Yersinia pseudotuberculosis | 28 | 5.0 | |
| ISRme10 | IS30 | Ralstonia metallidurans | 28 | 5.0 | |
| ISLxc1 | IS21 | Leifsonia xyli | 28 | 5.0 | |
| ISPst3 | IS21 | Pseudomonas stutzeri | 28 | 5.0 | |
| ISAcma1 | IS6 | Acaryochloris marina | 28 | 5.0 | |
| ISPsy20 | IS21 | Pseudomonas syringae | 28 | 5.0 | |
| ISPosp2 | IS701 | Polaromonas sp. | 28 | 5.0 | |
| ISFsp3 | IS21 | Frankia sp. | 28 | 5.0 | |
| ISTac1 | IS200/IS605 | Thermoplasma acidophilum | 28 | 5.0 | |
| ISAzo4 | IS21 | Azoarcus sp. | 28 | 5.0 | |
| ISBli3 | ISL3 | - | Brevibacterium linens | 28 | 5.0 |
| IS1631 | IS21 | - | Bradyrhizobium japonicum | 28 | 5.0 |
>ISRle3
Length = 2500
Score = 36.2 bits (18), Expect = 0.021
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 104 gcgggtgatccgggcggtgcgg 125
|||||||||||| |||||||||
Sbjct: 440 gcgggtgatccgagcggtgcgg 461
>ISRl1
Length = 2495
Score = 36.2 bits (18), Expect = 0.021
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 104 gcgggtgatccgggcggtgcgg 125
|||||||||||| |||||||||
Sbjct: 440 gcgggtgatccgagcggtgcgg 461
>ISPa38
Length = 6455
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 1 ccgacgccaacgcca 15
|||||||||||||||
Sbjct: 673 ccgacgccaacgcca 659
>ISRm17
Length = 1664
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 94 tgcacctggcgcggg 108
|||||||||||||||
Sbjct: 1380 tgcacctggcgcggg 1394
>ISMlo5
Length = 1664
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 94 tgcacctggcgcggg 108
|||||||||||||||
Sbjct: 1377 tgcacctggcgcggg 1391
>ISMch4
Length = 1631
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 95 gcacctggcgcgggt 109
|||||||||||||||
Sbjct: 291 gcacctggcgcgggt 277
>ISGur1
Length = 1556
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 234 aagcaatggcactgt 248
|||||||||||||||
Sbjct: 1347 aagcaatggcactgt 1361
>IS1372
Length = 1304
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 101 ggcgcgggtgatccg 115
|||||||||||||||
Sbjct: 581 ggcgcgggtgatccg 567
>ISHti6
Length = 1154
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 223 gaatcaggagaaag 236
||||||||||||||
Sbjct: 793 gaatcaggagaaag 806
>TnShfr1
Length = 5131
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 100 tggcgcgggtgatc 113
||||||||||||||
Sbjct: 2640 tggcgcgggtgatc 2627
>ISNha10
Length = 1428
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 110 gatccgggcggtgc 123
||||||||||||||
Sbjct: 526 gatccgggcggtgc 513
>ISTni2
Length = 3451
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 88 accgggtgcacctg 101
||||||||||||||
Sbjct: 1972 accgggtgcacctg 1985
>ISMrh1
Length = 1472
Score = 28.2 bits (14), Expect = 5.0
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 184 ctggcgcattggcggcga 201
|||| |||||||||||||
Sbjct: 988 ctggggcattggcggcga 1005
>ISAzs19
Length = 1322
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 113 ccgggcggtgcggg 126
||||||||||||||
Sbjct: 1102 ccgggcggtgcggg 1115
>ISGeob6
Length = 912
Score = 28.2 bits (14), Expect = 5.0
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 105 cgggtgatccgggcggtg 122
|||| |||||||||||||
Sbjct: 710 cgggcgatccgggcggtg 693
>ISRel19
Length = 2798
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 11 cgccaacatcctca 24
||||||||||||||
Sbjct: 2284 cgccaacatcctca 2297
>ISPfr5
Length = 1329
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 36 gatgtggagcaggc 49
||||||||||||||
Sbjct: 582 gatgtggagcaggc 569
>ISThsp16
Length = 1602
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 2 cgacgccaacgcca 15
||||||||||||||
Sbjct: 509 cgacgccaacgcca 522
>ISYps3
Length = 5723
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 119 ggtgcgggtacaac 132
||||||||||||||
Sbjct: 2510 ggtgcgggtacaac 2497
>ISRme10
Length = 1529
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 78 gaagtcgagaaccg 91
||||||||||||||
Sbjct: 1224 gaagtcgagaaccg 1211
>ISLxc1
Length = 3533
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 194 ggcggcgacttgcc 207
||||||||||||||
Sbjct: 51 ggcggcgacttgcc 64
>ISPst3
Length = 2606
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 16 acatcctcaatgtc 29
||||||||||||||
Sbjct: 1470 acatcctcaatgtc 1483
>ISAcma1
Length = 846
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 123 cgggtacaacaatc 136
||||||||||||||
Sbjct: 822 cgggtacaacaatc 809
>ISPsy20
Length = 2572
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 16 acatcctcaatgtc 29
||||||||||||||
Sbjct: 1470 acatcctcaatgtc 1483
>ISPosp2
Length = 1484
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 62 cttgcagttcgtcc 75
||||||||||||||
Sbjct: 76 cttgcagttcgtcc 63
>ISFsp3
Length = 2209
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 1 ccgacgccaacgcc 14
||||||||||||||
Sbjct: 193 ccgacgccaacgcc 180
>ISTac1
Length = 1569
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 1 ccgacgccaacgcc 14
||||||||||||||
Sbjct: 1395 ccgacgccaacgcc 1408
>ISAzo4
Length = 2757
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 92 ggtgcacctggcgc 105
||||||||||||||
Sbjct: 655 ggtgcacctggcgc 642
>ISBli3
Length = 1398
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 1 ccgacgccaacgcc 14
||||||||||||||
Sbjct: 227 ccgacgccaacgcc 240
>IS1631
Length = 2712
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 167 tcagcgccgctgaa 180
||||||||||||||
Sbjct: 66 tcagcgccgctgaa 79
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_233_length_256_cov_1.21229_ID_5636
(256 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISFsp4 | IS200/IS605 | Frankia sp. | 36 | 0.021 | |
| IS1136 | IS200/IS605 | IS1341 | Saccharopolyspora erythraea | 34 | 0.081 |
| ISFsp7 | IS5 | ISL2 | Frankia sp. | 32 | 0.32 |
| IS1554 | IS256 | Mycobacterium tuberculosis | 32 | 0.32 | |
| ISGrh1 | ISNCY | ISDol1 | Gordonia rhizosphera | 30 | 1.3 |
| TnXo19 | Tn3 | Xanthomonas oryzae | 30 | 1.3 | |
| ISNma24 | IS200/IS605 | IS1341 | Natrialba magadii | 30 | 1.3 |
| ISHbo6 | IS200/IS605 | IS1341 | Halogeometricum borinquense | 28 | 5.0 |
| ISRli1 | ISKra4 | ISAzba1 | Roseobacter litoralis | 28 | 5.0 |
| ISPa43 | Tn3 | Pseudomonas aeruginosa | 28 | 5.0 | |
| ISAzs33 | IS3 | IS150 | Azospirillum sp. | 28 | 5.0 |
| ISRjo3 | ISNCY | ISDol1 | Rhodococcus jostii | 28 | 5.0 |
| ISMno23 | IS91 | Methylobacterium nodulans | 28 | 5.0 | |
| ISPfr1 | ISL3 | Propionibacterium freudenreichii | 28 | 5.0 | |
| ISArsp6 | Tn3 | Arthrobacter sp. | 28 | 5.0 | |
| ISAar42 | ISL3 | Arthrobacter arilaitensis | 28 | 5.0 | |
| ISNml2 | IS1380 | Nakamurella multipartita | 28 | 5.0 | |
| ISRsp7 | IS1380 | Rhizobium sp. | 28 | 5.0 | |
| ISMex12 | IS110 | Methylobacterium extorquens | 28 | 5.0 | |
| ISMsi5 | IS3 | IS3 | Methylocella silvestris | 28 | 5.0 |
| ISThsp14 | ISL3 | Thiomonas sp. | 28 | 5.0 | |
| ISCARN15 | IS66 | Metagenomic data from CARNOULES | 28 | 5.0 | |
| ISSce1 | IS1 | ISMhu11 | Sorangium cellulosum | 28 | 5.0 |
| ISDsh3 | IS1595 | ISNha5 | Dinoroseobacter shibae | 28 | 5.0 |
| ISPla1 | IS1595 | ISPna2 | Parvibaculum lavamentivorans | 28 | 5.0 |
| ISCth1 | IS982 | Clostridium thermocellum | 28 | 5.0 | |
| ISNieu1 | IS1595 | IS1595 | Nitrosomonas eutropha | 28 | 5.0 |
| ISLxx2 | IS110 | Leifsonia xyli | 28 | 5.0 | |
| ISH8E | IS4 | ISH8 | Halobacterium sp. | 28 | 5.0 |
| ISAav3 | IS5 | - | Acidovorax avenae | 28 | 5.0 |
| IS1601 | IS256 | - | Mycobacterium avium | 28 | 5.0 |
| IS1245 | IS256 | - | Mycobacterium avium | 28 | 5.0 |
>ISFsp4
Length = 1784
Score = 36.2 bits (18), Expect = 0.021
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 87 gatcggcgtcgaccttgggttg 108
||||||||||||||| ||||||
Sbjct: 1048 gatcggcgtcgacctcgggttg 1069
>IS1136
Length = 1402
Score = 34.2 bits (17), Expect = 0.081
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 211 gatggcgtcgtgctcgc 227
|||||||||||||||||
Sbjct: 920 gatggcgtcgtgctcgc 904
>ISFsp7
Length = 1041
Score = 32.2 bits (16), Expect = 0.32
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 28 cacgccttcggtcggg 43
||||||||||||||||
Sbjct: 521 cacgccttcggtcggg 506
>IS1554
Length = 1462
Score = 32.2 bits (16), Expect = 0.32
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 86 cgatcggcgtcgacct 101
||||||||||||||||
Sbjct: 737 cgatcggcgtcgacct 752
>ISGrh1
Length = 1673
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 90 cggcgtcgaccttgg 104
|||||||||||||||
Sbjct: 1283 cggcgtcgaccttgg 1269
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 86 cgatcggcgtcgac 99
||||||||||||||
Sbjct: 278 cgatcggcgtcgac 265
>TnXo19
Length = 18767
Score = 30.2 bits (15), Expect = 1.3
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 222 gctcgcccaagcggcgcag 240
||||||| |||||||||||
Sbjct: 4810 gctcgccgaagcggcgcag 4792
>ISNma24
Length = 1544
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 85 ccgatcggcgtcgac 99
|||||||||||||||
Sbjct: 741 ccgatcggcgtcgac 755
>ISHbo6
Length = 1456
Score = 28.2 bits (14), Expect = 5.0
Identities = 20/22 (90%)
Strand = Plus / Minus
Query: 19 cgggccgatcacgccttcggtc 40
||||||| || |||||||||||
Sbjct: 867 cgggccgttctcgccttcggtc 846
>ISRli1
Length = 1454
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 33 cttcggtcgggtga 46
||||||||||||||
Sbjct: 340 cttcggtcgggtga 353
>ISPa43
Length = 19903
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 161 atgctcaagcgcga 174
||||||||||||||
Sbjct: 17486 atgctcaagcgcga 17499
>ISAzs33
Length = 1265
Score = 28.2 bits (14), Expect = 5.0
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 43 gtgatgccagcgcaccag 60
|||||| |||||||||||
Sbjct: 739 gtgatgtcagcgcaccag 722
>ISRjo3
Length = 1638
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 216 cgtcgtgctcgccc 229
||||||||||||||
Sbjct: 893 cgtcgtgctcgccc 880
>ISMno23
Length = 2271
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 18 ccgggccgatcacg 31
||||||||||||||
Sbjct: 55 ccgggccgatcacg 42
>ISPfr1
Length = 1427
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 86 cgatcggcgtcgac 99
||||||||||||||
Sbjct: 601 cgatcggcgtcgac 614
>ISArsp6
Length = 26712
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 71 ccgacgatgcgccc 84
||||||||||||||
Sbjct: 25001 ccgacgatgcgccc 25014
>ISAar42
Length = 1443
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 86 cgatcggcgtcgac 99
||||||||||||||
Sbjct: 608 cgatcggcgtcgac 621
>ISNml2
Length = 1689
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 91 ggcgtcgaccttgg 104
||||||||||||||
Sbjct: 939 ggcgtcgaccttgg 926
>ISRsp7
Length = 2024
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 232 gcggcgcagggcgc 245
||||||||||||||
Sbjct: 1447 gcggcgcagggcgc 1434
>ISMex12
Length = 1418
Score = 28.2 bits (14), Expect = 5.0
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 230 aagcggcgcagggcgccg 247
|||||||||||| |||||
Sbjct: 988 aagcggcgcaggtcgccg 971
>ISMsi5
Length = 1228
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 70 accgacgatgcgcc 83
||||||||||||||
Sbjct: 819 accgacgatgcgcc 806
>ISThsp14
Length = 1302
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 130 cttgtcgatcgctt 143
||||||||||||||
Sbjct: 495 cttgtcgatcgctt 482
>ISCARN15
Length = 2427
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 235 gcgcagggcgccga 248
||||||||||||||
Sbjct: 1833 gcgcagggcgccga 1846
>ISSce1
Length = 4601
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 228 ccaagcggcgcagg 241
||||||||||||||
Sbjct: 3649 ccaagcggcgcagg 3636
>ISDsh3
Length = 3472
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 45 gatgccagcgcacc 58
||||||||||||||
Sbjct: 2173 gatgccagcgcacc 2160
>ISPla1
Length = 1132
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 166 caagcgcgacatcg 179
||||||||||||||
Sbjct: 221 caagcgcgacatcg 208
>ISCth1
Length = 1151
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 109 atacaccagcacga 122
||||||||||||||
Sbjct: 688 atacaccagcacga 675
>ISNieu1
Length = 920
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 103 gggttgatacacca 116
||||||||||||||
Sbjct: 342 gggttgatacacca 355
>ISLxx2
Length = 1427
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 111 acaccagcacgaac 124
||||||||||||||
Sbjct: 26 acaccagcacgaac 13
>ISH8E
Length = 1403
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 189 tcatctgctcggtg 202
||||||||||||||
Sbjct: 563 tcatctgctcggtg 550
>ISAav3
Length = 1321
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 159 ccatgctcaagcgc 172
||||||||||||||
Sbjct: 810 ccatgctcaagcgc 823
>IS1601
Length = 1417
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 57 ccagggcctcgcca 70
||||||||||||||
Sbjct: 177 ccagggcctcgcca 164
>IS1245
Length = 1414
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 219 cgtgctcgcccaag 232
||||||||||||||
Sbjct: 898 cgtgctcgcccaag 911
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_234_length_256_cov_0.832402_ID_5638
(256 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISAzs29 | Tn3 | Azospirillum sp. | 34 | 0.081 | |
| ISAzo21 | IS66 | Azoarcus sp. | 34 | 0.081 | |
| ISAzo19 | IS66 | Azoarcus sp. | 34 | 0.081 | |
| ISCARN31 | IS630 | Metagenomic data from CARNOULES | 34 | 0.081 | |
| ISHti3 | IS200/IS605 | IS1341 | Halorhabdus tiamatea | 32 | 0.32 |
| ISCco2 | IS1595 | ISPna2 | Campylobacter coli | 32 | 0.32 |
| ISBcen19 | IS66 | Burkholderia cenocepacia | 32 | 0.32 | |
| ISUnCu15 | IS5 | IS903 | Uncultured bacterium | 30 | 1.3 |
| ISFsp13 | ISAzo13 | Frankia sp. | 30 | 1.3 | |
| ISStma1 | IS481 | Stenotrophomonas maltophilia | 30 | 1.3 | |
| ISStma3 | IS481 | Stenotrophomonas maltophilia | 30 | 1.3 | |
| ISAli16 | IS110 | Azospirillum lipoferum | 30 | 1.3 | |
| ISFsp10 | IS66 | ISBst12 | Frankia sp. | 30 | 1.3 |
| ISLxc3 | IS30 | Leifsonia xyli | 30 | 1.3 | |
| ISMyin1 | ISNCY | ISDol1 | Mycobacterium indicus | 28 | 5.0 |
| ISMno29 | IS110 | Methylobacterium nodulans | 28 | 5.0 | |
| ISMno24 | IS91 | Methylobacterium nodulans | 28 | 5.0 | |
| ISHarch15 | IS200/IS605 | IS605 | Halophilic archaeon | 28 | 5.0 |
| ISHhu5 | IS200/IS605 | IS1341 | Halobacterium hubeiense | 28 | 5.0 |
| ISHhu4 | IS200/IS605 | IS1341 | Halobacterium hubeiense | 28 | 5.0 |
| ISHxa1 | IS200/IS605 | IS1341 | Halopiger xanaduensis | 28 | 5.0 |
| ISHth2 | ISH6 | Halococcus thailandensis | 28 | 5.0 | |
| ISRso21 | ISL3 | Ralstonia solanacearum | 28 | 5.0 | |
| ISRel16 | IS21 | Rhizobium etli | 28 | 5.0 | |
| ISPso1 | IS256 | Paracoccus solventivorans | 28 | 5.0 | |
| ISHma13 | IS5 | ISH1 | Haloarcula marismortui | 28 | 5.0 |
| ISBrsp7 | IS5 | Bradyrhizobium sp. | 28 | 5.0 | |
| ISMtsp8 | IS21 | Methylobacterium sp. | 28 | 5.0 | |
| ISPfr18 | ISL3 | Propionibacterium freudenreichii | 28 | 5.0 | |
| ISPfr15 | IS481 | Propionibacterium freudenreichii | 28 | 5.0 | |
| ISMdi26 | IS5 | IS1031 | Methylobacterium dichloromethanicum | 28 | 5.0 |
| ISSav5 | IS481 | Streptomyces avermitilis | 28 | 5.0 | |
| ISPa27 | IS256 | Pseudomonas aeruginosa | 28 | 5.0 | |
| ISPa29 | IS110 | IS1111 | Pseudomonas aeruginosa | 28 | 5.0 |
| ISAeh1 | IS66 | Alkalilimnicola ehrlichei | 28 | 5.0 | |
| ISDsh3 | IS1595 | ISNha5 | Dinoroseobacter shibae | 28 | 5.0 |
| ISOgr1 | IS3 | IS51 | Oceanicola granulosus | 28 | 5.0 |
| ISDar2 | IS4 | IS4Sa | Dechloromonas aromatica | 28 | 5.0 |
| IS1650 | IS5 | IS427 | Streptomyces coelicolor | 28 | 5.0 |
| ISSme3 | IS66 | Sinorhizobium medicae | 28 | 5.0 |
>ISAzs29
Length = 3897
Score = 34.2 bits (17), Expect = 0.081
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 183 ggccgatggcctcgtcg 199
|||||||||||||||||
Sbjct: 1752 ggccgatggcctcgtcg 1736
>ISAzo21
Length = 2423
Score = 34.2 bits (17), Expect = 0.081
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 205 ctcaccaccgccatggc 221
|||||||||||||||||
Sbjct: 2036 ctcaccaccgccatggc 2052
>ISAzo19
Length = 2423
Score = 34.2 bits (17), Expect = 0.081
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 205 ctcaccaccgccatggc 221
|||||||||||||||||
Sbjct: 2036 ctcaccaccgccatggc 2052
>ISCARN31
Length = 1099
Score = 34.2 bits (17), Expect = 0.081
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 108 atcgccgcccaggcaaa 124
|||||||||||||||||
Sbjct: 539 atcgccgcccaggcaaa 555
>ISHti3
Length = 1400
Score = 32.2 bits (16), Expect = 0.32
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 1 ggcgacgacggcgacc 16
||||||||||||||||
Sbjct: 263 ggcgacgacggcgacc 278
>ISCco2
Length = 7852
Score = 32.2 bits (16), Expect = 0.32
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 175 aacgatctggccgatg 190
||||||||||||||||
Sbjct: 2849 aacgatctggccgatg 2864
>ISBcen19
Length = 2450
Score = 32.2 bits (16), Expect = 0.32
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 186 cgatggcctcgtcgag 201
||||||||||||||||
Sbjct: 1102 cgatggcctcgtcgag 1087
>ISUnCu15
Length = 1053
Score = 30.2 bits (15), Expect = 1.3
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 111 gccgcccaggcaaacgacc 129
||||| |||||||||||||
Sbjct: 270 gccgctcaggcaaacgacc 288
>ISFsp13
Length = 1724
Score = 30.2 bits (15), Expect = 1.3
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 195 cgtcgaggacctcaccacc 213
|||| ||||||||||||||
Sbjct: 1662 cgtccaggacctcaccacc 1680
>ISStma1
Length = 1023
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 12 cgacccccagcgcct 26
|||||||||||||||
Sbjct: 378 cgacccccagcgcct 364
>ISStma3
Length = 1023
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 12 cgacccccagcgcct 26
|||||||||||||||
Sbjct: 378 cgacccccagcgcct 364
>ISAli16
Length = 1153
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 2 gcgacgacggcgacc 16
|||||||||||||||
Sbjct: 1065 gcgacgacggcgacc 1051
>ISFsp10
Length = 1713
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 107 catcgccgcccaggc 121
|||||||||||||||
Sbjct: 166 catcgccgcccaggc 180
>ISLxc3
Length = 1511
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 105 agcatcgccgcccag 119
|||||||||||||||
Sbjct: 565 agcatcgccgcccag 579
>ISMyin1
Length = 1532
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 173 tcaacgatctggcc 186
||||||||||||||
Sbjct: 841 tcaacgatctggcc 854
>ISMno29
Length = 1192
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 3 cgacgacggcgacc 16
||||||||||||||
Sbjct: 449 cgacgacggcgacc 436
>ISMno24
Length = 2157
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 218 tggcccgcatcccc 231
||||||||||||||
Sbjct: 1831 tggcccgcatcccc 1818
>ISHarch15
Length = 1988
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 143 ccttcgaggtcgtc 156
||||||||||||||
Sbjct: 625 ccttcgaggtcgtc 638
>ISHhu5
Length = 1400
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 3 cgacgacggcgacc 16
||||||||||||||
Sbjct: 265 cgacgacggcgacc 278
>ISHhu4
Length = 1401
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 3 cgacgacggcgacc 16
||||||||||||||
Sbjct: 266 cgacgacggcgacc 279
>ISHxa1
Length = 1457
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 150 ggtcgtctccaaca 163
||||||||||||||
Sbjct: 166 ggtcgtctccaaca 153
>ISHth2
Length = 1442
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 240 cgtcatctcgcgtg 253
||||||||||||||
Sbjct: 1076 cgtcatctcgcgtg 1089
>ISRso21
Length = 2032
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 211 accgccatggcccg 224
||||||||||||||
Sbjct: 733 accgccatggcccg 746
>ISRel16
Length = 2597
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 166 gccgatctcaacga 179
||||||||||||||
Sbjct: 1056 gccgatctcaacga 1069
>ISPso1
Length = 1400
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 186 cgatggcctcgtcg 199
||||||||||||||
Sbjct: 1212 cgatggcctcgtcg 1199
>ISHma13
Length = 1193
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 156 ctccaacaatgccg 169
||||||||||||||
Sbjct: 392 ctccaacaatgccg 379
>ISBrsp7
Length = 1292
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 18 ccagcgcctgatcc 31
||||||||||||||
Sbjct: 809 ccagcgcctgatcc 796
>ISMtsp8
Length = 2371
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 144 cttcgaggtcgtct 157
||||||||||||||
Sbjct: 531 cttcgaggtcgtct 544
>ISPfr18
Length = 1437
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 227 tccccgcgctgctc 240
||||||||||||||
Sbjct: 1186 tccccgcgctgctc 1199
>ISPfr15
Length = 1097
Score = 28.2 bits (14), Expect = 5.0
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 189 tggcctcgtcgaggacct 206
|||| |||||||||||||
Sbjct: 866 tggcgtcgtcgaggacct 849
>ISMdi26
Length = 859
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 114 gcccaggcaaacga 127
||||||||||||||
Sbjct: 728 gcccaggcaaacga 715
>ISSav5
Length = 1953
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 193 ctcgtcgaggacct 206
||||||||||||||
Sbjct: 1560 ctcgtcgaggacct 1547
>ISPa27
Length = 1361
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 182 tggccgatggcctc 195
||||||||||||||
Sbjct: 774 tggccgatggcctc 787
>ISPa29
Length = 1534
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 208 accaccgccatggc 221
||||||||||||||
Sbjct: 787 accaccgccatggc 800
>ISAeh1
Length = 2320
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 132 cgccctgctgccct 145
||||||||||||||
Sbjct: 2241 cgccctgctgccct 2254
>ISDsh3
Length = 3472
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 139 ctgcccttcgaggt 152
||||||||||||||
Sbjct: 2410 ctgcccttcgaggt 2423
>ISOgr1
Length = 1255
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 110 cgccgcccaggcaa 123
||||||||||||||
Sbjct: 659 cgccgcccaggcaa 672
>ISDar2
Length = 1322
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 17 cccagcgcctgatc 30
||||||||||||||
Sbjct: 438 cccagcgcctgatc 451
>IS1650
Length = 898
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 216 catggcccgcatcc 229
||||||||||||||
Sbjct: 533 catggcccgcatcc 546
>ISSme3
Length = 3149
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 163 aatgccgatctcaa 176
||||||||||||||
Sbjct: 1029 aatgccgatctcaa 1042
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_235_length_255_cov_0.820225_ID_5640
(255 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISMno23 | IS91 | Methylobacterium nodulans | 34 | 0.081 | |
| ISAzo19 | IS66 | Azoarcus sp. | 34 | 0.081 | |
| ISMex36 | IS1182 | Methylobacterium extorquens | 32 | 0.32 | |
| ISAZo16 | IS21 | Azoarcus sp. | 32 | 0.32 | |
| ISBlo6 | ISL3 | Bifidobacterium longum | 32 | 0.32 | |
| ISBj9 | IS701 | Bradyrhizobium japonicum | 30 | 1.3 | |
| ISHth2 | ISH6 | Halococcus thailandensis | 30 | 1.3 | |
| ISMex12 | IS110 | Methylobacterium extorquens | 30 | 1.3 | |
| ISMch2 | IS5 | IS427 | Methylobacterium chloromethanicum | 30 | 1.3 |
| ISCARN52 | IS110 | Metagenomic data from CARNOULES | 30 | 1.3 | |
| ISAzo9 | IS630 | Azoarcus sp. | 30 | 1.3 | |
| TnXo19 | Tn3 | Xanthomonas oryzae | 28 | 5.0 | |
| ISBlo16 | IS256 | IS1249 | Bifidobacterium longum | 28 | 5.0 |
| ISAzs26 | ISKra4 | ISAzba1 | Azospirillum sp. | 28 | 5.0 |
| ISMepa1 | IS5 | Methanosphaerula palustris | 28 | 5.0 | |
| ISMno36 | IS6 | Methylobacterium nodulans | 28 | 5.0 | |
| ISMtsp18 | IS3 | IS2 | Methylobacterium sp. | 28 | 5.0 |
| ISMno28 | IS6 | Methylobacterium nodulans | 28 | 5.0 | |
| ISNosp1 | IS1380 | Nocardioides sp. | 28 | 5.0 | |
| ISMdi11 | IS481 | Methylobacterium dichloromethanicum | 28 | 5.0 | |
| ISMex13 | IS21 | Methylobacterium extorquens | 28 | 5.0 | |
| ISCARN16 | IS21 | Metagenomic data from CARNOULES | 28 | 5.0 | |
| ISAnsp3 | IS66 | Anaeromyxobacter sp. | 28 | 5.0 | |
| ISShes10 | IS30 | Shewanella sp. | 28 | 5.0 | |
| ISDsh3 | IS1595 | ISNha5 | Dinoroseobacter shibae | 28 | 5.0 |
| ISMsm2 | IS630 | Mycobacterium smegmatis | 28 | 5.0 | |
| ISOba2 | IS3 | IS407 | Oceanicola batsensis | 28 | 5.0 |
| ISAzo7 | IS1595 | ISSod11 | Azoarcus sp. | 28 | 5.0 |
| IS1476 | ISL3 | - | Enterococcus faecium | 28 | 5.0 |
>ISMno23
Length = 2271
Score = 34.2 bits (17), Expect = 0.081
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 231 gctcgcccccgaccagctcga 251
|||||||||||||| ||||||
Sbjct: 618 gctcgcccccgacctgctcga 638
>ISAzo19
Length = 2423
Score = 34.2 bits (17), Expect = 0.081
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 231 gctcgcccccgaccagctcga 251
|||||||||||||||| ||||
Sbjct: 1183 gctcgcccccgaccagttcga 1203
>ISMex36
Length = 1467
Score = 32.2 bits (16), Expect = 0.32
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 170 gcccggcacaggcgca 185
||||||||||||||||
Sbjct: 445 gcccggcacaggcgca 430
>ISAZo16
Length = 2485
Score = 32.2 bits (16), Expect = 0.32
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 164 tgctcggcccggcacaggcg 183
||||||||||| ||||||||
Sbjct: 471 tgctcggcccgccacaggcg 452
>ISBlo6
Length = 1330
Score = 32.2 bits (16), Expect = 0.32
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 222 cgtcagcacgctcgcc 237
||||||||||||||||
Sbjct: 437 cgtcagcacgctcgcc 452
>ISBj9
Length = 1454
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 234 cgcccccgaccagct 248
|||||||||||||||
Sbjct: 833 cgcccccgaccagct 819
>ISHth2
Length = 1442
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 1 tggcgatccgcgcgc 15
|||||||||||||||
Sbjct: 1058 tggcgatccgcgcgc 1044
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 2 ggcgatccgcgcgc 15
||||||||||||||
Sbjct: 1036 ggcgatccgcgcgc 1049
>ISMex12
Length = 1418
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 121 cacatgatccgcatc 135
|||||||||||||||
Sbjct: 423 cacatgatccgcatc 437
>ISMch2
Length = 861
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 137 tcgccccgctcctgc 151
|||||||||||||||
Sbjct: 90 tcgccccgctcctgc 104
>ISCARN52
Length = 1640
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 10 gcgcgcagcatccgt 24
|||||||||||||||
Sbjct: 488 gcgcgcagcatccgt 474
>ISAzo9
Length = 1483
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 9 cgcgcgcagcatccg 23
|||||||||||||||
Sbjct: 94 cgcgcgcagcatccg 80
>TnXo19
Length = 18767
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 228 cacgctcgcccccg 241
||||||||||||||
Sbjct: 8624 cacgctcgcccccg 8637
>ISBlo16
Length = 1323
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 61 acggcctgcccggc 74
||||||||||||||
Sbjct: 772 acggcctgcccggc 759
>ISAzs26
Length = 2226
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 125 tgatccgcatcctc 138
||||||||||||||
Sbjct: 808 tgatccgcatcctc 795
>ISMepa1
Length = 1009
Score = 28.2 bits (14), Expect = 5.0
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 28 aacttcctgaaatcgtcg 45
|||||||||||| |||||
Sbjct: 526 aacttcctgaaaacgtcg 543
>ISMno36
Length = 888
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 231 gctcgcccccgacc 244
||||||||||||||
Sbjct: 501 gctcgcccccgacc 514
>ISMtsp18
Length = 1341
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 215 gcgccagcgtcagc 228
||||||||||||||
Sbjct: 746 gcgccagcgtcagc 733
>ISMno28
Length = 892
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 160 ggcctgctcggccc 173
||||||||||||||
Sbjct: 857 ggcctgctcggccc 844
>ISNosp1
Length = 1678
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 159 cggcctgctcggcc 172
||||||||||||||
Sbjct: 235 cggcctgctcggcc 222
>ISMdi11
Length = 1053
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 218 ccagcgtcagcacg 231
||||||||||||||
Sbjct: 252 ccagcgtcagcacg 239
>ISMex13
Length = 2359
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 128 tccgcatcctcgcc 141
||||||||||||||
Sbjct: 761 tccgcatcctcgcc 748
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 126 gatccgcatcctcg 139
||||||||||||||
Sbjct: 1185 gatccgcatcctcg 1198
>ISCARN16
Length = 2594
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 61 acggcctgcccggc 74
||||||||||||||
Sbjct: 1145 acggcctgcccggc 1132
>ISAnsp3
Length = 2518
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 180 ggcgcaagaacttc 193
||||||||||||||
Sbjct: 2205 ggcgcaagaacttc 2218
>ISShes10
Length = 1113
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 240 cgaccagctcgaag 253
||||||||||||||
Sbjct: 308 cgaccagctcgaag 295
>ISDsh3
Length = 3472
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 129 ccgcatcctcgccc 142
||||||||||||||
Sbjct: 1362 ccgcatcctcgccc 1349
>ISMsm2
Length = 1126
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 237 ccccgaccagctcg 250
||||||||||||||
Sbjct: 897 ccccgaccagctcg 910
>ISOba2
Length = 1253
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 128 tccgcatcctcgcc 141
||||||||||||||
Sbjct: 728 tccgcatcctcgcc 741
>ISAzo7
Length = 1044
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 238 cccgaccagctcga 251
||||||||||||||
Sbjct: 859 cccgaccagctcga 872
>IS1476
Length = 1500
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 22 cgtatgaacttcct 35
||||||||||||||
Sbjct: 593 cgtatgaacttcct 606
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_236_length_255_cov_0.820225_ID_5642
(255 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISSme1 | IS3 | IS407 | Sinorhizobium medicae | 34 | 0.081 |
| ISRm7 | IS3 | IS407 | Rhizobium meliloti | 34 | 0.081 |
| ISAs29 | IS21 | Aeromonas salmonicida | 30 | 1.3 | |
| ISMgi2 | IS1182 | Mycobacterium gilvum | 30 | 1.3 | |
| ISPmi1 | IS3 | IS51 | Proteus mirabilis | 30 | 1.3 |
| ISMba9 | IS256 | Methanosarcina barkeri | 30 | 1.3 | |
| ISMma16 | IS256 | Methanosarcina mazei | 30 | 1.3 | |
| IS4811 | IS5 | IS1031 | Streptomyces lividans | 30 | 1.3 |
| ISEle1 | IS256 | IS1249 | Eggerthella lenta | 28 | 5.0 |
| ISRusp2 | IS5 | IS903 | Ruegeria sp. | 28 | 5.0 |
| ISSisp2 | IS5 | IS903 | Silicibacter sp. | 28 | 5.0 |
| ISGeob4 | IS5 | ISL2 | Geodermatophilus obscurus | 28 | 5.0 |
| ISGau7 | IS21 | Gemmatimonas aurantiaca | 28 | 5.0 | |
| ISMno23 | IS91 | Methylobacterium nodulans | 28 | 5.0 | |
| ISMsi1 | IS21 | Methylocella silvestris | 28 | 5.0 | |
| ISVsa13 | ISAs1 | Aliivibrio salmonicida | 28 | 5.0 | |
| ISAzo28 | IS110 | Azoarcus sp. | 28 | 5.0 | |
| ISPst8 | IS5 | IS427 | Pseudomonas stutzeri | 28 | 5.0 |
| ISNeu4 | IS3 | IS3 | Nitrosomonas europaea | 28 | 5.0 |
| ISPpu15 | IS66 | Pseudomonas putida | 28 | 5.0 | |
| ISRm3G | IS256 | - | Rhizobium meliloti | 28 | 5.0 |
| ISRm3 | IS256 | - | Rhizobium meliloti | 28 | 5.0 |
| ISPpu3 | IS630 | - | Pseudomonas putida | 28 | 5.0 |
>ISSme1
Length = 1271
Score = 34.2 bits (17), Expect = 0.081
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 159 gcgcctgaaggcgctcg 175
|||||||||||||||||
Sbjct: 225 gcgcctgaaggcgctcg 241
>ISRm7
Length = 912
Score = 34.2 bits (17), Expect = 0.081
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 159 gcgcctgaaggcgctcg 175
|||||||||||||||||
Sbjct: 765 gcgcctgaaggcgctcg 749
>ISAs29
Length = 2613
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 167 aggcgctcggcctga 181
|||||||||||||||
Sbjct: 361 aggcgctcggcctga 375
>ISMgi2
Length = 1770
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 2 gctcgggcggcgcgc 16
|||||||||||||||
Sbjct: 1396 gctcgggcggcgcgc 1382
>ISPmi1
Length = 1306
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 94 tccattttgtggaag 108
|||||||||||||||
Sbjct: 375 tccattttgtggaag 389
>ISMba9
Length = 1268
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 177 cctgatcgacaagat 191
|||||||||||||||
Sbjct: 126 cctgatcgacaagat 112
>ISMma16
Length = 1268
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 177 cctgatcgacaagat 191
|||||||||||||||
Sbjct: 128 cctgatcgacaagat 114
>IS4811
Length = 5396
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 189 gatcgtgaacgagcc 203
|||||||||||||||
Sbjct: 641 gatcgtgaacgagcc 627
>ISEle1
Length = 1334
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 205 gtgggcggcgctca 218
||||||||||||||
Sbjct: 569 gtgggcggcgctca 582
>ISRusp2
Length = 1049
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 228 tcgcgcgatggcgc 241
||||||||||||||
Sbjct: 768 tcgcgcgatggcgc 755
>ISSisp2
Length = 1050
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 242 aaacgctcaagcgc 255
||||||||||||||
Sbjct: 119 aaacgctcaagcgc 132
>ISGeob4
Length = 982
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 165 gaaggcgctcggcc 178
||||||||||||||
Sbjct: 877 gaaggcgctcggcc 890
>ISGau7
Length = 2510
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 203 cggtgggcggcgct 216
||||||||||||||
Sbjct: 718 cggtgggcggcgct 731
>ISMno23
Length = 2271
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 171 gctcggcctgatcg 184
||||||||||||||
Sbjct: 256 gctcggcctgatcg 243
>ISMsi1
Length = 2307
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 111 cgcggatcaggcct 124
||||||||||||||
Sbjct: 1686 cgcggatcaggcct 1673
>ISVsa13
Length = 1226
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 186 caagatcgtgaacg 199
||||||||||||||
Sbjct: 6 caagatcgtgaacg 19
>ISAzo28
Length = 1486
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 110 gcgcggatcaggcc 123
||||||||||||||
Sbjct: 589 gcgcggatcaggcc 576
>ISPst8
Length = 910
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 240 gcaaacgctcaagc 253
||||||||||||||
Sbjct: 306 gcaaacgctcaagc 293
>ISNeu4
Length = 1270
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 64 tactcggtgatttc 77
||||||||||||||
Sbjct: 1134 tactcggtgatttc 1121
>ISPpu15
Length = 2041
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 176 gcctgatcgacaag 189
||||||||||||||
Sbjct: 1276 gcctgatcgacaag 1289
>ISRm3G
Length = 1298
Score = 28.2 bits (14), Expect = 5.0
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 156 ggcgcgcctgaaggcgct 173
|||| |||||||||||||
Sbjct: 916 ggcgggcctgaaggcgct 933
>ISRm3
Length = 1298
Score = 28.2 bits (14), Expect = 5.0
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 156 ggcgcgcctgaaggcgct 173
|||| |||||||||||||
Sbjct: 916 ggcgggcctgaaggcgct 933
>ISPpu3
Length = 1135
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 214 gctcaccgcaatca 227
||||||||||||||
Sbjct: 1095 gctcaccgcaatca 1108
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_237_length_255_cov_0.820225_ID_5644
(255 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISAhy3 | IS30 | Aeromonas hydrophila | 32 | 0.32 | |
| ISCARN70 | IS4 | IS4Sa | Metagenomic data from CARNOULES | 32 | 0.32 |
| ISXac4 | IS3 | IS407 | Xanthomonas axonopodis | 30 | 1.3 |
| ISRhsp6 | IS5 | IS5 | Rhodobacter sphaeroides | 30 | 1.3 |
| ISCARN32 | IS110 | IS1111 | Metagenomic data from CARNOULES | 30 | 1.3 |
| ISRssp2 | IS1595 | ISNha5 | Roseovarius sp. | 30 | 1.3 |
| ISBad2 | IS3 | IS150 | Bifidobacterium adolescentis | 30 | 1.3 |
| TnXo19 | Tn3 | Xanthomonas oryzae | 28 | 5.0 | |
| ISRel10 | ISNCY | IS1202 | Rhizobium etli | 28 | 5.0 |
| ISUnCu17 | IS1182 | Uncultured bacteria | 28 | 5.0 | |
| ISHwa22 | IS200/IS605 | IS1341 | Haloquadratum walsbyi | 28 | 5.0 |
| ISHla17 | IS200/IS605 | Halorubrum lacusprofundi | 28 | 5.0 | |
| ISHbo8 | IS200/IS605 | IS1341 | Halogeometricum borinquense | 28 | 5.0 |
| ISAzs18 | IS66 | Azospirillum sp. | 28 | 5.0 | |
| ISRpa8 | IS5 | IS5 | Rhodopseudomonas palustris | 28 | 5.0 |
| ISAnsp4 | IS21 | Anaeromyxobacter sp. | 28 | 5.0 | |
| ISThsp15 | IS630 | Thiomonas sp. | 28 | 5.0 | |
| ISThsp1 | IS1182 | Thiomonas sp. | 28 | 5.0 | |
| IS1553 | IS256 | Mycobacterium tuberculosis | 28 | 5.0 | |
| ISMsm4 | ISL3 | Mycobacterium smegmatis | 28 | 5.0 | |
| ISAzvi12 | IS110 | IS1111 | Azotobacter vinelandii | 28 | 5.0 |
| ISGbe2 | IS3 | IS2 | Granulibacter bethesdensis | 28 | 5.0 |
| ISCausp1 | IS3 | IS3 | Caulobacter sp. | 28 | 5.0 |
| IS1595 | IS1595 | IS1595 | Xanthomonas campestris | 28 | 5.0 |
| ISNph2 | IS1595 | ISH4 | Natronomonas pharaonis | 28 | 5.0 |
| ISRsp1 | IS66 | - | Rhizobium sp. | 28 | 5.0 |
| ISRso10 | IS3 | IS2 | Ralstonia solanacearum | 28 | 5.0 |
| ISPa42 | Tn3 | Pseudomonas aeruginosa | 28 | 5.0 | |
| IS493 | IS5 | ISL2 | Streptomyces lividans | 28 | 5.0 |
| IS1136 | IS200/IS605 | IS1341 | Saccharopolyspora erythraea | 28 | 5.0 |
>ISAhy3
Length = 1221
Score = 32.2 bits (16), Expect = 0.32
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 142 gcgctgcaccatctgc 157
||||||||||||||||
Sbjct: 600 gcgctgcaccatctgc 615
>ISCARN70
Length = 1312
Score = 32.2 bits (16), Expect = 0.32
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 89 ttgcgcacgatggcga 104
||||||||||||||||
Sbjct: 1145 ttgcgcacgatggcga 1130
>ISXac4
Length = 1202
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 136 cgcgaggcgctgcac 150
|||||||||||||||
Sbjct: 776 cgcgaggcgctgcac 790
>ISRhsp6
Length = 1486
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 131 cgcggcgcgaggcgc 145
|||||||||||||||
Sbjct: 700 cgcggcgcgaggcgc 686
>ISCARN32
Length = 1151
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 27 tgagctgcatcaggc 41
|||||||||||||||
Sbjct: 694 tgagctgcatcaggc 680
>ISRssp2
Length = 4633
Score = 30.2 bits (15), Expect = 1.3
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 140 aggcgctgcaccatctgcg 158
||||||||||| |||||||
Sbjct: 3441 aggcgctgcacaatctgcg 3423
>ISBad2
Length = 1470
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 133 cggcgcgaggcgctg 147
|||||||||||||||
Sbjct: 107 cggcgcgaggcgctg 121
>TnXo19
Length = 18767
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 87 cgttgcgcacgatg 100
||||||||||||||
Sbjct: 2899 cgttgcgcacgatg 2886
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 138 cgaggcgctgcacc 151
||||||||||||||
Sbjct: 15424 cgaggcgctgcacc 15437
>ISRel10
Length = 2528
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 181 cagcgcggcgacat 194
||||||||||||||
Sbjct: 2258 cagcgcggcgacat 2271
>ISUnCu17
Length = 1481
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 133 cggcgcgaggcgct 146
||||||||||||||
Sbjct: 1355 cggcgcgaggcgct 1342
>ISHwa22
Length = 1541
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 55 gggcgagtgcgcct 68
||||||||||||||
Sbjct: 564 gggcgagtgcgcct 577
>ISHla17
Length = 1885
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 46 ggcgttcttgggcg 59
||||||||||||||
Sbjct: 395 ggcgttcttgggcg 382
>ISHbo8
Length = 1655
Score = 28.2 bits (14), Expect = 5.0
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 55 gggcgagtgcgccttggg 72
||||||||||| ||||||
Sbjct: 1085 gggcgagtgcgtcttggg 1068
>ISAzs18
Length = 2633
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 241 gaccgcgagatcga 254
||||||||||||||
Sbjct: 1195 gaccgcgagatcga 1208
>ISRpa8
Length = 1540
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 242 accgcgagatcgag 255
||||||||||||||
Sbjct: 922 accgcgagatcgag 909
>ISAnsp4
Length = 2195
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 131 cgcggcgcgaggcg 144
||||||||||||||
Sbjct: 371 cgcggcgcgaggcg 384
>ISThsp15
Length = 1482
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 146 tgcaccatctgcgc 159
||||||||||||||
Sbjct: 1032 tgcaccatctgcgc 1045
>ISThsp1
Length = 1539
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 132 gcggcgcgaggcgc 145
||||||||||||||
Sbjct: 659 gcggcgcgaggcgc 672
>IS1553
Length = 1406
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 60 agtgcgccttggga 73
||||||||||||||
Sbjct: 1112 agtgcgccttggga 1099
>ISMsm4
Length = 1458
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 138 cgaggcgctgcacc 151
||||||||||||||
Sbjct: 190 cgaggcgctgcacc 177
>ISAzvi12
Length = 1248
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 90 tgcgcacgatggcg 103
||||||||||||||
Sbjct: 704 tgcgcacgatggcg 691
>ISGbe2
Length = 1352
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 239 atgaccgcgagatc 252
||||||||||||||
Sbjct: 899 atgaccgcgagatc 912
>ISCausp1
Length = 1262
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 149 accatctgcgcatg 162
||||||||||||||
Sbjct: 310 accatctgcgcatg 323
>IS1595
Length = 1072
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 126 caaagcgcggcgcg 139
||||||||||||||
Sbjct: 641 caaagcgcggcgcg 628
>ISNph2
Length = 1003
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 175 gaccggcagcgcgg 188
||||||||||||||
Sbjct: 188 gaccggcagcgcgg 175
>ISRsp1
Length = 3481
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 224 cggccgagcgtctt 237
||||||||||||||
Sbjct: 1694 cggccgagcgtctt 1707
>ISRso10
Length = 1335
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 95 acgatggcgagcgc 108
||||||||||||||
Sbjct: 439 acgatggcgagcgc 426
>ISPa42
Length = 16941
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 209 tgacgcgaaatgac 222
||||||||||||||
Sbjct: 3193 tgacgcgaaatgac 3180
>IS493
Length = 1643
Score = 28.2 bits (14), Expect = 5.0
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 156 gcgcatgcgaacgccgac 173
|||||||||||| |||||
Sbjct: 739 gcgcatgcgaaccccgac 722
>IS1136
Length = 1402
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 175 gaccggcagcgcgg 188
||||||||||||||
Sbjct: 653 gaccggcagcgcgg 666
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_238_length_255_cov_0.814607_ID_5646
(255 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISThsp9 | Tn3 | Thiomonas sp. | 34 | 0.081 | |
| ISAar24 | IS3 | IS3 | Arthrobacter arilaitensis | 32 | 0.32 |
| ISAde2 | IS1182 | Anaeromyxobacter dehalogenans | 32 | 0.32 | |
| ISMdi1 | IS630 | Methylobacterium dichloromethanicum | 32 | 0.32 | |
| ISPa42 | Tn3 | Pseudomonas aeruginosa | 32 | 0.32 | |
| ISEc37 | IS91 | Escherichia coli | 30 | 1.3 | |
| ISSisp2 | IS5 | IS903 | Silicibacter sp. | 30 | 1.3 |
| ISMyma7 | IS1380 | - | Mycobacterium marinum | 30 | 1.3 |
| ISMdi27 | IS21 | Methylobacterium dichloromethanicum | 30 | 1.3 | |
| ISCARN99 | IS21 | Metagenomic data from CARNOULES | 30 | 1.3 | |
| ISCARN68 | IS256 | Metagenomic data from CARNOULES | 30 | 1.3 | |
| ISSav7 | IS481 | Streptomyces avermitilis | 30 | 1.3 | |
| ISCARN6 | IS200/IS605 | Metagenomic data from CARNOULES | 30 | 1.3 | |
| ISStau2 | IS66 | ISBst12 | Stigmatella aurantiaca | 30 | 1.3 |
| ISHar6 | IS110 | IS1111 | Herminiimonas arsenicoxydans | 30 | 1.3 |
| ISXca1 | IS3 | IS407 | Xanthomonas campestris | 30 | 1.3 |
| IS91 | IS91 | - | Escherichia coli | 30 | 1.3 |
| IS476 | IS3 | IS407 | Xanthomonas campestris | 30 | 1.3 |
| IS1474 | IS21 | - | Pseudomonas alcaligenes | 30 | 1.3 |
| ISMyin1 | ISNCY | ISDol1 | Mycobacterium indicus | 28 | 5.0 |
| TnXo19 | Tn3 | Xanthomonas oryzae | 28 | 5.0 | |
| ISRsp13 | IS5 | Rhizhobium sp. | 28 | 5.0 | |
| ISMno16 | IS110 | IS1111 | Methylobacterium nodulans | 28 | 5.0 |
| ISRel12 | IS481 | Rhizobium etli | 28 | 5.0 | |
| ISHvo24 | IS200/IS605 | IS1341 | Haloferax volcanii | 28 | 5.0 |
| TnAs2 | Tn3 | Aeromonas salmonicida | 28 | 5.0 | |
| TnShfr1 | Tn3 | Shewanella frigidimarina | 28 | 5.0 | |
| ISHhu10 | IS200/IS605 | IS1341 | Halobacterium hubeiense | 28 | 5.0 |
| ISEfm2 | IS256 | Enterococcus faecium | 28 | 5.0 | |
| ISWch1 | IS256 | Waddlia chondrophila | 28 | 5.0 | |
| ISPa43 | Tn3 | Pseudomonas aeruginosa | 28 | 5.0 | |
| ISAzs20 | IS66 | Azospirillum sp. | 28 | 5.0 | |
| ISAra1 | IS5 | IS903 | Agrobacterium radiobacter | 28 | 5.0 |
| ISRm33 | IS5 | IS903 | Sinorhizobium meliloti | 28 | 5.0 |
| ISHph1 | IS5 | IS903 | Hoeflea phototrophica | 28 | 5.0 |
| ISGeob5 | IS5 | IS427 | Geodermatophilus obscurus | 28 | 5.0 |
| ISAs12 | ISAs1 | Aeromonas salmonicida | 28 | 5.0 | |
| ISMgi3 | IS1182 | Mycobacterium gilvum | 28 | 5.0 | |
| ISVsp1 | IS1634 | Verrucomicrobium spinosum | 28 | 5.0 | |
| ISRjo3 | ISNCY | ISDol1 | Rhodococcus jostii | 28 | 5.0 |
| ISMamg2 | IS3 | IS407 | Magnetospirillum magneticum | 28 | 5.0 |
| ISMra3 | IS256 | Methylobacterium radiotolerans | 28 | 5.0 | |
| ISPfr11 | IS3 | IS3 | Propionibacterium freudenreichii | 28 | 5.0 |
| ISAau2 | IS21 | Arthrobacter aurescens | 28 | 5.0 | |
| ISStr1 | IS1380 | Salinispora tropica | 28 | 5.0 | |
| ISAar2 | IS110 | Arthrobacter arilaitensis | 28 | 5.0 | |
| ISAnsp11 | IS3 | IS3 | Anaeromyxobacter sp. | 28 | 5.0 |
| ISMex38 | Tn3 | Methylobacterium extorquens | 28 | 5.0 | |
| ISStma11 | ISL3 | Stenotrophomonas maltophilia | 28 | 5.0 | |
| ISRssp2 | IS1595 | ISNha5 | Roseovarius sp. | 28 | 5.0 |
| ISPa31 | IS3 | IS3 | Pseudomonas aeruginosa | 28 | 5.0 |
| ISPst3 | IS21 | Pseudomonas stutzeri | 28 | 5.0 | |
| ISPa25 | IS110 | IS1111 | Pseudomonas aeruginosa | 28 | 5.0 |
| ISSme1 | IS3 | IS407 | Sinorhizobium medicae | 28 | 5.0 |
| ISOba1 | IS3 | IS407 | Oceanicola batsensis | 28 | 5.0 |
| ISAzvi7 | IS4 | IS50 | Azotobacter vinelandii | 28 | 5.0 |
| ISMyma5 | IS481 | - | Mycobacterium marinum | 28 | 5.0 |
| ISBcen19 | IS66 | Burkholderia cenocepacia | 28 | 5.0 | |
| ISRso14 | IS3 | IS407 | Ralstonia solanacearum | 28 | 5.0 |
| ISRm6 | IS3 | IS407 | Rhizobium meliloti | 28 | 5.0 |
| IS1086 | IS30 | - | Ralstonia metallidurans | 28 | 5.0 |
>ISThsp9
Length = 6215
Score = 34.2 bits (17), Expect = 0.081
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 174 ccagcggcgcgggctgc 190
|||||||||||||||||
Sbjct: 5824 ccagcggcgcgggctgc 5840
>ISAar24
Length = 1270
Score = 32.2 bits (16), Expect = 0.32
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 77 tcggcgatggcctcga 92
||||||||||||||||
Sbjct: 1005 tcggcgatggcctcga 1020
>ISAde2
Length = 1498
Score = 32.2 bits (16), Expect = 0.32
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 74 cgctcggcgatggcctcgat 93
||||| ||||||||||||||
Sbjct: 1048 cgctctgcgatggcctcgat 1029
>ISMdi1
Length = 1058
Score = 32.2 bits (16), Expect = 0.32
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 198 tcagcccggccagcgcggtg 217
||||||| ||||||||||||
Sbjct: 184 tcagcccagccagcgcggtg 203
>ISPa42
Length = 16941
Score = 32.2 bits (16), Expect = 0.32
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 76 ctcggcgatggcctcg 91
||||||||||||||||
Sbjct: 6733 ctcggcgatggcctcg 6718
>ISEc37
Length = 1828
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 218 ttgacgatgccgttg 232
|||||||||||||||
Sbjct: 222 ttgacgatgccgttg 236
>ISSisp2
Length = 1050
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 73 gcgctcggcgatggc 87
|||||||||||||||
Sbjct: 693 gcgctcggcgatggc 679
>ISMyma7
Length = 1694
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 199 cagcccggccagcgc 213
|||||||||||||||
Sbjct: 683 cagcccggccagcgc 669
>ISMdi27
Length = 2476
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 75 gctcggcgatggcct 89
|||||||||||||||
Sbjct: 1396 gctcggcgatggcct 1410
>ISCARN99
Length = 2192
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 115 ctgtgcgagatgatc 129
|||||||||||||||
Sbjct: 1104 ctgtgcgagatgatc 1090
>ISCARN68
Length = 1419
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 77 tcggcgatggcctcg 91
|||||||||||||||
Sbjct: 1295 tcggcgatggcctcg 1281
>ISSav7
Length = 2992
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 89 tcgatcaccagatcg 103
|||||||||||||||
Sbjct: 1939 tcgatcaccagatcg 1953
>ISCARN6
Length = 1856
Score = 30.2 bits (15), Expect = 1.3
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 197 ttcagcccggccagcgcgg 215
|||||||||||||| ||||
Sbjct: 734 ttcagcccggccagagcgg 716
>ISStau2
Length = 1585
Score = 30.2 bits (15), Expect = 1.3
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 191 agcttcttcagcccggcca 209
|||||||||||| ||||||
Sbjct: 173 agcttcttcagctcggcca 155
>ISHar6
Length = 1359
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 188 tgcagcttcttcagc 202
|||||||||||||||
Sbjct: 617 tgcagcttcttcagc 603
>ISXca1
Length = 1225
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 197 ttcagcccggccagc 211
|||||||||||||||
Sbjct: 160 ttcagcccggccagc 174
>IS91
Length = 1829
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 218 ttgacgatgccgttg 232
|||||||||||||||
Sbjct: 222 ttgacgatgccgttg 236
>IS476
Length = 1226
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 197 ttcagcccggccagc 211
|||||||||||||||
Sbjct: 161 ttcagcccggccagc 175
>IS1474
Length = 2633
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 75 gctcggcgatggcct 89
|||||||||||||||
Sbjct: 1097 gctcggcgatggcct 1083
>ISMyin1
Length = 1532
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 81 cgatggcctcgatc 94
||||||||||||||
Sbjct: 101 cgatggcctcgatc 88
>TnXo19
Length = 18767
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 203 ccggccagcgcggt 216
||||||||||||||
Sbjct: 3776 ccggccagcgcggt 3763
>ISRsp13
Length = 1353
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 8 gccaggatggcggc 21
||||||||||||||
Sbjct: 469 gccaggatggcggc 456
>ISMno16
Length = 1404
Score = 28.2 bits (14), Expect = 5.0
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 159 gccgcgccttgctcgcca 176
|||||||||||| |||||
Sbjct: 1005 gccgcgccttgcgcgcca 988
>ISRel12
Length = 1002
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 124 atgatcgtcgtagt 137
||||||||||||||
Sbjct: 836 atgatcgtcgtagt 823
>ISHvo24
Length = 1462
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 132 cgtagttggcggcc 145
||||||||||||||
Sbjct: 263 cgtagttggcggcc 250
>TnAs2
Length = 8650
Score = 28.2 bits (14), Expect = 5.0
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 4 ggaggccaggatggcggc 21
|||||| |||||||||||
Sbjct: 605 ggaggcgaggatggcggc 588
>TnShfr1
Length = 5131
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 172 cgccagcggcgcgg 185
||||||||||||||
Sbjct: 2238 cgccagcggcgcgg 2251
>ISHhu10
Length = 1386
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 132 cgtagttggcggcc 145
||||||||||||||
Sbjct: 231 cgtagttggcggcc 218
>ISEfm2
Length = 1325
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 226 gccgttgcggtcgc 239
||||||||||||||
Sbjct: 343 gccgttgcggtcgc 330
>ISWch1
Length = 1399
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 176 agcggcgcgggctg 189
||||||||||||||
Sbjct: 769 agcggcgcgggctg 782
>ISPa43
Length = 19903
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 170 ctcgccagcggcgc 183
||||||||||||||
Sbjct: 12960 ctcgccagcggcgc 12973
>ISAzs20
Length = 2811
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 199 cagcccggccagcg 212
||||||||||||||
Sbjct: 714 cagcccggccagcg 727
>ISAra1
Length = 1116
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 13 gatggcggcgggcg 26
||||||||||||||
Sbjct: 104 gatggcggcgggcg 91
>ISRm33
Length = 1116
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 13 gatggcggcgggcg 26
||||||||||||||
Sbjct: 107 gatggcggcgggcg 94
>ISHph1
Length = 1130
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 13 gatggcggcgggcg 26
||||||||||||||
Sbjct: 111 gatggcggcgggcg 98
>ISGeob5
Length = 903
Score = 28.2 bits (14), Expect = 5.0
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 200 agcccggccagcgcggtg 217
|||| |||||||||||||
Sbjct: 848 agccgggccagcgcggtg 831
>ISAs12
Length = 1438
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 14 atggcggcgggcga 27
||||||||||||||
Sbjct: 998 atggcggcgggcga 1011
>ISMgi3
Length = 1770
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 212 gcggtgttgacgat 225
||||||||||||||
Sbjct: 1443 gcggtgttgacgat 1430
>ISVsp1
Length = 2082
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 11 aggatggcggcggg 24
||||||||||||||
Sbjct: 1533 aggatggcggcggg 1546
>ISRjo3
Length = 1638
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 81 cgatggcctcgatc 94
||||||||||||||
Sbjct: 101 cgatggcctcgatc 88
>ISMamg2
Length = 1486
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 189 gcagcttcttcagc 202
||||||||||||||
Sbjct: 88 gcagcttcttcagc 75
>ISMra3
Length = 1398
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 176 agcggcgcgggctg 189
||||||||||||||
Sbjct: 610 agcggcgcgggctg 597
>ISPfr11
Length = 1315
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 138 tggcggcctcgatg 151
||||||||||||||
Sbjct: 642 tggcggcctcgatg 655
>ISAau2
Length = 2222
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 213 cggtgttgacgatg 226
||||||||||||||
Sbjct: 530 cggtgttgacgatg 543
>ISStr1
Length = 1664
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 77 tcggcgatggcctc 90
||||||||||||||
Sbjct: 350 tcggcgatggcctc 337
>ISAar2
Length = 1473
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 226 gccgttgcggtcgc 239
||||||||||||||
Sbjct: 461 gccgttgcggtcgc 474
>ISAnsp11
Length = 1510
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 200 agcccggccagcgc 213
||||||||||||||
Sbjct: 290 agcccggccagcgc 277
>ISMex38
Length = 3841
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 72 tgcgctcggcgatg 85
||||||||||||||
Sbjct: 287 tgcgctcggcgatg 300
>ISStma11
Length = 4621
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 42 tcttgtcgtagagc 55
||||||||||||||
Sbjct: 1296 tcttgtcgtagagc 1283
Score = 28.2 bits (14), Expect = 5.0
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 5 gaggccaggatggcggcg 22
||||| ||||||||||||
Sbjct: 3849 gaggcgaggatggcggcg 3866
>ISRssp2
Length = 4633
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 77 tcggcgatggcctc 90
||||||||||||||
Sbjct: 4080 tcggcgatggcctc 4067
>ISPa31
Length = 1671
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 189 gcagcttcttcagc 202
||||||||||||||
Sbjct: 123 gcagcttcttcagc 110
>ISPst3
Length = 2606
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 204 cggccagcgcggtg 217
||||||||||||||
Sbjct: 1959 cggccagcgcggtg 1946
>ISPa25
Length = 1410
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 222 cgatgccgttgcgg 235
||||||||||||||
Sbjct: 610 cgatgccgttgcgg 623
>ISSme1
Length = 1271
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 189 gcagcttcttcagc 202
||||||||||||||
Sbjct: 271 gcagcttcttcagc 258
>ISOba1
Length = 1271
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 189 gcagcttcttcagc 202
||||||||||||||
Sbjct: 271 gcagcttcttcagc 258
>ISAzvi7
Length = 1450
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 55 cgcgtgcttccagt 68
||||||||||||||
Sbjct: 1417 cgcgtgcttccagt 1404
>ISMyma5
Length = 1838
Score = 28.2 bits (14), Expect = 5.0
Identities = 20/22 (90%)
Strand = Plus / Minus
Query: 76 ctcggcgatggcctcgatcacc 97
|||||||||||| |||| ||||
Sbjct: 1000 ctcggcgatggcgtcgaacacc 979
>ISBcen19
Length = 2450
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 45 tgtcgtagagcgcg 58
||||||||||||||
Sbjct: 1957 tgtcgtagagcgcg 1944
>ISRso14
Length = 1234
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 189 gcagcttcttcagc 202
||||||||||||||
Sbjct: 962 gcagcttcttcagc 975
>ISRm6
Length = 1261
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 189 gcagcttcttcagc 202
||||||||||||||
Sbjct: 268 gcagcttcttcagc 255
>IS1086
Length = 1106
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 153 gcatgagccgcgcc 166
||||||||||||||
Sbjct: 660 gcatgagccgcgcc 673
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_239_length_255_cov_0.820225_ID_5648
(255 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISNph27 | IS200/IS605 | IS1341 | Natronomonas pharaonis | 34 | 0.081 |
| ISPa38 | Tn3 | Pseudomonas aeruginosa | 34 | 0.081 | |
| ISArsp6 | Tn3 | Arthrobacter sp. | 34 | 0.081 | |
| ISSco2 | IS481 | Streptomyces coelicolor | 34 | 0.081 | |
| ISRso13 | IS4 | IS4 | Ralstonia solanacearum | 34 | 0.081 |
| ISHmu5 | IS200/IS605 | Halomicrobium mukohataei | 32 | 0.32 | |
| ISNph5 | IS200/IS605 | Natronomonas pharaonis | 32 | 0.32 | |
| ISPfr4 | ISL3 | Propionibacterium freudenreichii | 32 | 0.32 | |
| ISNml1 | IS1380 | Nakamurella multipartita | 32 | 0.32 | |
| ISAli15 | IS66 | Azospirillum lipoferum | 32 | 0.32 | |
| ISTesp1 | IS3 | IS51 | Terrabacter sp. | 32 | 0.32 |
| ISNaoc4 | IS200/IS605 | IS1341 | Natronococcus occultus | 30 | 1.3 |
| ISPsp6 | IS5 | IS5 | Pseudomonas sp. | 30 | 1.3 |
| ISNma2 | IS5 | ISH1 | Natrialba magadii | 30 | 1.3 |
| ISKpn15 | IS66 | ISBst12 | Klebsiella pneumonia | 30 | 1.3 |
| ISAzs30 | IS21 | Azospirillum sp. | 30 | 1.3 | |
| ISCli1 | IS1380 | Corynebacterium lipophiloflavum | 30 | 1.3 | |
| ISCef6 | IS1380 | Corynebacterium efficiens | 30 | 1.3 | |
| ISCgl4 | IS1380 | Corynebacterium glutamicum | 30 | 1.3 | |
| ISAar6 | IS256 | Arthrobacter arilaitensis | 30 | 1.3 | |
| ISThsp1 | IS1182 | Thiomonas sp. | 30 | 1.3 | |
| ISRosp2 | IS3 | IS407 | Roseobacter sp. | 30 | 1.3 |
| ISPa9 | IS5 | IS5 | Pseudomonas aeruginosa | 30 | 1.3 |
| IS1474 | IS21 | - | Pseudomonas alcaligenes | 30 | 1.3 |
| IS1406 | IS5 | Pseudomonas sp. | 30 | 1.3 | |
| ISXci1 | IS21 | Xanthomonas citri | 28 | 5.0 | |
| ISRel26 | ISNCY | IS1202 | Rhizobium etli | 28 | 5.0 |
| ISMdi15 | IS200/IS605 | IS1341 | Methylobacterium dichloromethanicum | 28 | 5.0 |
| ISHam2 | IS200/IS605 | IS1341 | Haloarcula amylolytica | 28 | 5.0 |
| ISHla19 | IS200/IS605 | Halorubrum lacusprofundi | 28 | 5.0 | |
| ISNamo22 | IS200/IS605 | IS1341 | Natronomonas moolapensis | 28 | 5.0 |
| ISPko3 | IS5 | IS903 | Paracoccus kondratievae | 28 | 5.0 |
| ISHhu2 | IS200/IS605 | Halobacterium hubeiense | 28 | 5.0 | |
| ISNpe12 | IS200/IS605 | IS1341 | Natrinema pellirubrum | 28 | 5.0 |
| ISBlo17 | IS256 | IS1249 | Bifidobacterium longum | 28 | 5.0 |
| ISGsi1 | IS256 | IS1249 | Gordonia sihwensis | 28 | 5.0 |
| ISUnCu16 | IS66 | ISBst12 | Uncultured bacterium | 28 | 5.0 |
| ISPfe2 | IS1634 | Paracoccus ferrooxidans | 28 | 5.0 | |
| ISRel16 | IS21 | Rhizobium etli | 28 | 5.0 | |
| ISSysp5 | IS5 | Synechococcus sp. | 28 | 5.0 | |
| ISButh4 | IS5 | IS5 | Burkholderia thailandensis | 28 | 5.0 |
| ISMno32 | IS1182 | Methylobacterium nodulans | 28 | 5.0 | |
| ISMra3 | IS256 | Methylobacterium radiotolerans | 28 | 5.0 | |
| ISMtsp8 | IS21 | Methylobacterium sp. | 28 | 5.0 | |
| ISAar33 | IS21 | Arthrobacter arilaitensis | 28 | 5.0 | |
| ISAzo40 | IS1380 | Azoarcus sp. | 28 | 5.0 | |
| ISAzo22 | IS110 | Azoarcus sp. | 28 | 5.0 | |
| ISCARN49 | IS21 | Metagenomic data from CARNOULES | 28 | 5.0 | |
| ISBj5_B | IS5 | IS5 | Bradyrhizobium japonicum | 28 | 5.0 |
| ISGdi14 | IS3 | IS51 | Gluconacetobacter diazotrophicus | 28 | 5.0 |
| ISAli18 | ISL3 | Azospirillum lipoferum | 28 | 5.0 | |
| ISLxx3 | IS21 | Leifsonia xyli | 28 | 5.0 | |
| ISBlo4 | IS30 | Bifidobacterium longum | 28 | 5.0 | |
| ISRsp2 | IS21 | - | Rhizobium sp. | 28 | 5.0 |
| ISRru1 | IS3 | IS51 | Rhodococcus ruber | 28 | 5.0 |
| IS987 | IS3 | IS51 | Mycobacterium bovis | 28 | 5.0 |
| IS986 | IS3 | IS51 | Mycobacterium tuberculosis | 28 | 5.0 |
| IS6110 | IS3 | IS51 | Mycobacterium tuberculosis | 28 | 5.0 |
| IS1164 | IS256 | - | Rhodococcus rhodochrous | 28 | 5.0 |
| IS1162 | IS21 | - | Pseudomonas fluorescens | 28 | 5.0 |
>ISNph27
Length = 1714
Score = 34.2 bits (17), Expect = 0.081
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 118 ttcgaagggcacgccga 134
|||||||||||||||||
Sbjct: 1444 ttcgaagggcacgccga 1460
>ISPa38
Length = 6455
Score = 34.2 bits (17), Expect = 0.081
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 226 gtcgatgccggtgtcgg 242
|||||||||||||||||
Sbjct: 4814 gtcgatgccggtgtcgg 4798
>ISArsp6
Length = 26712
Score = 34.2 bits (17), Expect = 0.081
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 228 cgatgccggtgtcggcg 244
|||||||||||||||||
Sbjct: 4100 cgatgccggtgtcggcg 4116
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 81 cgggctcggcaccg 94
||||||||||||||
Sbjct: 25825 cgggctcggcaccg 25812
>ISSco2
Length = 1964
Score = 34.2 bits (17), Expect = 0.081
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 113 agcagttcgaagggcacgccg 133
|||| ||||||||||||||||
Sbjct: 723 agcacttcgaagggcacgccg 703
>ISRso13
Length = 1467
Score = 34.2 bits (17), Expect = 0.081
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 164 gccgcatcgacctgggc 180
|||||||||||||||||
Sbjct: 496 gccgcatcgacctgggc 512
>ISHmu5
Length = 1847
Score = 32.2 bits (16), Expect = 0.32
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 135 agtccatcagcacatcgatg 154
||||||||||||| ||||||
Sbjct: 520 agtccatcagcacgtcgatg 501
>ISNph5
Length = 1847
Score = 32.2 bits (16), Expect = 0.32
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 135 agtccatcagcacatcgatg 154
||||||||||||| ||||||
Sbjct: 520 agtccatcagcacgtcgatg 501
>ISPfr4
Length = 1415
Score = 32.2 bits (16), Expect = 0.32
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 203 gtgccgcggctgcggc 218
||||||||||||||||
Sbjct: 239 gtgccgcggctgcggc 254
>ISNml1
Length = 1636
Score = 32.2 bits (16), Expect = 0.32
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 172 gacctgggcctgggtg 187
||||||||||||||||
Sbjct: 1052 gacctgggcctgggtg 1037
Score = 28.2 bits (14), Expect = 5.0
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 232 gccggtgtcggcgcgcag 249
||||| ||||||||||||
Sbjct: 788 gccggagtcggcgcgcag 771
>ISAli15
Length = 2658
Score = 32.2 bits (16), Expect = 0.32
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 204 tgccgcggctgcggct 219
||||||||||||||||
Sbjct: 1560 tgccgcggctgcggct 1575
>ISTesp1
Length = 1353
Score = 32.2 bits (16), Expect = 0.32
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 94 ggcgacctggtcgcgg 109
||||||||||||||||
Sbjct: 662 ggcgacctggtcgcgg 647
>ISNaoc4
Length = 1568
Score = 30.2 bits (15), Expect = 1.3
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 96 cgacctggtcgcggtcgag 114
|||||| ||||||||||||
Sbjct: 1113 cgaccttgtcgcggtcgag 1131
>ISPsp6
Length = 1210
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 167 gcatcgacctgggcc 181
|||||||||||||||
Sbjct: 362 gcatcgacctgggcc 376
>ISNma2
Length = 1471
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 137 tccatcagcacatcg 151
|||||||||||||||
Sbjct: 165 tccatcagcacatcg 179
>ISKpn15
Length = 1534
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 63 gtttggcatgggcca 77
|||||||||||||||
Sbjct: 438 gtttggcatgggcca 424
>ISAzs30
Length = 2365
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 169 atcgacctgggcctg 183
|||||||||||||||
Sbjct: 520 atcgacctgggcctg 506
>ISCli1
Length = 1687
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 86 tcggcaccggcgacc 100
|||||||||||||||
Sbjct: 332 tcggcaccggcgacc 318
>ISCef6
Length = 1684
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 86 tcggcaccggcgacc 100
|||||||||||||||
Sbjct: 332 tcggcaccggcgacc 318
>ISCgl4
Length = 1653
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 86 tcggcaccggcgacc 100
|||||||||||||||
Sbjct: 305 tcggcaccggcgacc 291
>ISAar6
Length = 1519
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 95 gcgacctggtcgcgg 109
|||||||||||||||
Sbjct: 894 gcgacctggtcgcgg 908
>ISThsp1
Length = 1539
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 124 gggcacgccgaagtc 138
|||||||||||||||
Sbjct: 830 gggcacgccgaagtc 816
>ISRosp2
Length = 1254
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 229 gatgccggtgtcggc 243
|||||||||||||||
Sbjct: 796 gatgccggtgtcggc 782
>ISPa9
Length = 1207
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 167 gcatcgacctgggcc 181
|||||||||||||||
Sbjct: 360 gcatcgacctgggcc 374
>IS1474
Length = 2633
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 104 tcgcggtcgagcagt 118
|||||||||||||||
Sbjct: 1930 tcgcggtcgagcagt 1916
>IS1406
Length = 1214
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 167 gcatcgacctgggcc 181
|||||||||||||||
Sbjct: 366 gcatcgacctgggcc 380
>ISXci1
Length = 2013
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 109 gtcgagcagttcga 122
||||||||||||||
Sbjct: 1313 gtcgagcagttcga 1326
>ISRel26
Length = 1634
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 205 gccgcggctgcggc 218
||||||||||||||
Sbjct: 477 gccgcggctgcggc 490
>ISMdi15
Length = 1344
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 104 tcgcggtcgagcag 117
||||||||||||||
Sbjct: 753 tcgcggtcgagcag 766
>ISHam2
Length = 1580
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 17 tcgccggtttcgtc 30
||||||||||||||
Sbjct: 348 tcgccggtttcgtc 335
>ISHla19
Length = 1851
Score = 28.2 bits (14), Expect = 5.0
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 137 tccatcagcacatcgatg 154
||||||||||| ||||||
Sbjct: 517 tccatcagcacgtcgatg 500
>ISNamo22
Length = 1706
Score = 28.2 bits (14), Expect = 5.0
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 117 gttcgaagggcacgccga 134
|||||| |||||||||||
Sbjct: 1443 gttcgaggggcacgccga 1460
>ISPko3
Length = 1017
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 108 ggtcgagcagttcg 121
||||||||||||||
Sbjct: 607 ggtcgagcagttcg 594
>ISHhu2
Length = 1846
Score = 28.2 bits (14), Expect = 5.0
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 137 tccatcagcacatcgatg 154
||||||||||| ||||||
Sbjct: 511 tccatcagcacgtcgatg 494
>ISNpe12
Length = 1399
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 107 cggtcgagcagttc 120
||||||||||||||
Sbjct: 203 cggtcgagcagttc 216
>ISBlo17
Length = 1352
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 225 agtcgatgccggtg 238
||||||||||||||
Sbjct: 1277 agtcgatgccggtg 1264
>ISGsi1
Length = 1310
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 182 tgggtgcggaacag 195
||||||||||||||
Sbjct: 1022 tgggtgcggaacag 1009
>ISUnCu16
Length = 1532
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 158 cgtttggccgcatc 171
||||||||||||||
Sbjct: 899 cgtttggccgcatc 886
>ISPfe2
Length = 1884
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 161 ttggccgcatcgac 174
||||||||||||||
Sbjct: 262 ttggccgcatcgac 275
>ISRel16
Length = 2597
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 201 gcgtgccgcggctg 214
||||||||||||||
Sbjct: 2133 gcgtgccgcggctg 2146
>ISSysp5
Length = 1398
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 136 gtccatcagcacat 149
||||||||||||||
Sbjct: 755 gtccatcagcacat 742
>ISButh4
Length = 1483
Score = 28.2 bits (14), Expect = 5.0
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 156 cgcgtttggccgcatcga 173
||||||||||||| ||||
Sbjct: 522 cgcgtttggccgcttcga 505
>ISMno32
Length = 1538
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 78 gcgcgggctcggca 91
||||||||||||||
Sbjct: 1353 gcgcgggctcggca 1366
>ISMra3
Length = 1398
Score = 28.2 bits (14), Expect = 5.0
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 73 ggccagcgcgggctcggc 90
||||||||||| ||||||
Sbjct: 381 ggccagcgcggcctcggc 398
>ISMtsp8
Length = 2371
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 170 tcgacctgggcctg 183
||||||||||||||
Sbjct: 521 tcgacctgggcctg 508
>ISAar33
Length = 2628
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 198 gcagcgtgccgcgg 211
||||||||||||||
Sbjct: 771 gcagcgtgccgcgg 784
>ISAzo40
Length = 1694
Score = 28.2 bits (14), Expect = 5.0
Identities = 20/22 (90%)
Strand = Plus / Minus
Query: 226 gtcgatgccggtgtcggcgcgc 247
||||| |||| |||||||||||
Sbjct: 744 gtcgaagccgctgtcggcgcgc 723
>ISAzo22
Length = 1763
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 97 gacctggtcgcggt 110
||||||||||||||
Sbjct: 463 gacctggtcgcggt 476
>ISCARN49
Length = 2630
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 129 cgccgaagtccatc 142
||||||||||||||
Sbjct: 938 cgccgaagtccatc 925
>ISBj5_B
Length = 1524
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 62 tgtttggcatgggc 75
||||||||||||||
Sbjct: 786 tgtttggcatgggc 773
>ISGdi14
Length = 1318
Score = 28.2 bits (14), Expect = 5.0
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 34 gggcaggcgcaggccgcc 51
||||| ||||||||||||
Sbjct: 509 gggcacgcgcaggccgcc 492
>ISAli18
Length = 1752
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 43 caggccgccggcga 56
||||||||||||||
Sbjct: 1548 caggccgccggcga 1535
>ISLxx3
Length = 2637
Score = 28.2 bits (14), Expect = 5.0
Identities = 21/22 (95%), Gaps = 1/22 (4%)
Strand = Plus / Minus
Query: 33 tgggcaggcgcaggccgccggc 54
|||||||||||| |||||||||
Sbjct: 1894 tgggcaggcgca-gccgccggc 1874
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 81 cgggctcggcaccg 94
||||||||||||||
Sbjct: 2196 cgggctcggcaccg 2209
>ISBlo4
Length = 1399
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 109 gtcgagcagttcga 122
||||||||||||||
Sbjct: 1314 gtcgagcagttcga 1301
>ISRsp2
Length = 2623
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 237 tgtcggcgcgcagg 250
||||||||||||||
Sbjct: 1900 tgtcggcgcgcagg 1887
>ISRru1
Length = 1345
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 219 tttcgtagtcgatg 232
||||||||||||||
Sbjct: 1261 tttcgtagtcgatg 1248
>IS987
Length = 1355
Score = 28.2 bits (14), Expect = 5.0
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 167 gcatcgacctgggcctgg 184
||||||||||| ||||||
Sbjct: 233 gcatcgacctgcgcctgg 216
>IS986
Length = 1354
Score = 28.2 bits (14), Expect = 5.0
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 167 gcatcgacctgggcctgg 184
||||||||||| ||||||
Sbjct: 232 gcatcgacctgcgcctgg 215
>IS6110
Length = 1354
Score = 28.2 bits (14), Expect = 5.0
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 167 gcatcgacctgggcctgg 184
||||||||||| ||||||
Sbjct: 233 gcatcgacctgcgcctgg 216
>IS1164
Length = 1430
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 99 cctggtcgcggtcg 112
||||||||||||||
Sbjct: 682 cctggtcgcggtcg 695
>IS1162
Length = 2634
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 104 tcgcggtcgagcag 117
||||||||||||||
Sbjct: 1932 tcgcggtcgagcag 1919
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_240_length_255_cov_0.820225_ID_5650
(255 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISHoc1 | IS1380 | Haliangium ochraceum | 36 | 0.021 | |
| ISMno17 | IS1182 | Methylobacterium nodulans | 34 | 0.081 | |
| ISRop1 | IS1380 | Rhodococcus opacus | 34 | 0.081 | |
| IS1511 | IS256 | - | Mycobacterium gordonae | 34 | 0.081 |
| ISSav6 | IS5 | ISL2 | Streptomyces avermitilis | 32 | 0.32 |
| ISAar34 | ISL3 | Arthrobacter arilaitensis | 32 | 0.32 | |
| ISAli18 | ISL3 | Azospirillum lipoferum | 32 | 0.32 | |
| ISSiac3 | ISAzo13 | Singulisphaera acidiphila | 32 | 0.32 | |
| ISAzs20 | IS66 | Azospirillum sp. | 30 | 1.3 | |
| ISThsp13 | IS1380 | Thiomonas sp. | 30 | 1.3 | |
| ISPa4 | ISNCY | - | Pseudomonas aeruginosa | 30 | 1.3 |
| IS1408 | IS256 | - | Mycobacterium branderi | 30 | 1.3 |
| ISMipa1 | ISNCY | ISDol1 | Microthrix parvicella | 28 | 5.0 |
| TnAs2 | Tn3 | Aeromonas salmonicida | 28 | 5.0 | |
| ISRba10 | IS256 | Rhodopirellula baltica | 28 | 5.0 | |
| ISGho1 | IS1182 | Grimontia hollisae | 28 | 5.0 | |
| ISMtsp7 | IS110 | IS1111 | Methylobacterium sp. | 28 | 5.0 |
| ISPfr10 | IS3 | IS407 | Propionibacterium freudenreichii | 28 | 5.0 |
| ISGosp1 | IS1380 | Gordonia sp. | 28 | 5.0 | |
| ISMdi7 | IS21 | Methylobacterium dichloromethanicum | 28 | 5.0 | |
| ISMex8 | IS21 | Methylobacterium extorquens | 28 | 5.0 | |
| ISAzo34 | IS256 | Azoarcus sp. | 28 | 5.0 | |
| ISCARN41 | IS630 | Metagenomic data from CARNOULES | 28 | 5.0 | |
| ISCausp2 | IS1595 | ISNha5 | Caulobacter sp. | 28 | 5.0 |
| ISPst3 | IS21 | Pseudomonas stutzeri | 28 | 5.0 | |
| ISCod1 | IS3 | IS150 | Corynebacterium diphtheriae | 28 | 5.0 |
| ISBlma3 | IS4 | IS4Sa | Blastopirellula marina | 28 | 5.0 |
| ISShsp1 | IS110 | IS1111 | Sphingomonas sp. | 28 | 5.0 |
| ISXc6 | IS5 | IS5 | Xanthomonas campestris | 28 | 5.0 |
| IS1478 | IS5 | IS5 | Xanthomonas campestris | 28 | 5.0 |
>ISHoc1
Length = 1711
Score = 36.2 bits (18), Expect = 0.021
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 230 agggcgcgcgatatcgtc 247
||||||||||||||||||
Sbjct: 453 agggcgcgcgatatcgtc 436
>ISMno17
Length = 1534
Score = 34.2 bits (17), Expect = 0.081
Identities = 23/25 (92%)
Strand = Plus / Plus
Query: 210 cgacggtggcgatcagcgcgagggc 234
||||| |||| ||||||||||||||
Sbjct: 53 cgacgatggcaatcagcgcgagggc 77
>ISRop1
Length = 4160
Score = 34.2 bits (17), Expect = 0.081
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 213 cggtggcgatcagcgcg 229
|||||||||||||||||
Sbjct: 3137 cggtggcgatcagcgcg 3121
>IS1511
Length = 1278
Score = 34.2 bits (17), Expect = 0.081
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 213 cggtggcgatcagcgcg 229
|||||||||||||||||
Sbjct: 625 cggtggcgatcagcgcg 609
>ISSav6
Length = 1244
Score = 32.2 bits (16), Expect = 0.32
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 85 ccgctcaccatgacag 100
||||||||||||||||
Sbjct: 946 ccgctcaccatgacag 961
>ISAar34
Length = 1438
Score = 32.2 bits (16), Expect = 0.32
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 208 cacgacggtggcgatc 223
||||||||||||||||
Sbjct: 788 cacgacggtggcgatc 773
>ISAli18
Length = 1752
Score = 32.2 bits (16), Expect = 0.32
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 66 ccttgtcgctgccgtcgagc 85
||||||||||||||| ||||
Sbjct: 1577 ccttgtcgctgccgtggagc 1596
>ISSiac3
Length = 1335
Score = 32.2 bits (16), Expect = 0.32
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 124 cgccttgcccagggtc 139
||||||||||||||||
Sbjct: 759 cgccttgcccagggtc 744
>ISAzs20
Length = 2811
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 214 ggtggcgatcagcgc 228
|||||||||||||||
Sbjct: 1042 ggtggcgatcagcgc 1028
>ISThsp13
Length = 1583
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 137 gtcgggtttggcatc 151
|||||||||||||||
Sbjct: 1555 gtcgggtttggcatc 1541
>ISPa4
Length = 2564
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 11 aatgcgatatcgcca 25
|||||||||||||||
Sbjct: 1336 aatgcgatatcgcca 1350
>IS1408
Length = 1325
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 213 cggtggcgatcagcg 227
|||||||||||||||
Sbjct: 618 cggtggcgatcagcg 604
>ISMipa1
Length = 1629
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 207 gcacgacggtggcg 220
||||||||||||||
Sbjct: 570 gcacgacggtggcg 557
>TnAs2
Length = 8650
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 131 cccagggtcgggtt 144
||||||||||||||
Sbjct: 1199 cccagggtcgggtt 1186
>ISRba10
Length = 1449
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 71 tcgctgccgtcgag 84
||||||||||||||
Sbjct: 810 tcgctgccgtcgag 797
>ISGho1
Length = 1618
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 146 ggcatcaagcccgg 159
||||||||||||||
Sbjct: 921 ggcatcaagcccgg 908
>ISMtsp7
Length = 1316
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 78 cgtcgagccgctca 91
||||||||||||||
Sbjct: 645 cgtcgagccgctca 632
>ISPfr10
Length = 1247
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 69 tgtcgctgccgtcg 82
||||||||||||||
Sbjct: 171 tgtcgctgccgtcg 158
>ISGosp1
Length = 1642
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 214 ggtggcgatcagcg 227
||||||||||||||
Sbjct: 657 ggtggcgatcagcg 644
>ISMdi7
Length = 2568
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 219 cgatcagcgcgagg 232
||||||||||||||
Sbjct: 1248 cgatcagcgcgagg 1235
>ISMex8
Length = 2597
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 219 cgatcagcgcgagg 232
||||||||||||||
Sbjct: 1249 cgatcagcgcgagg 1236
>ISAzo34
Length = 1439
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 75 tgccgtcgagccgc 88
||||||||||||||
Sbjct: 723 tgccgtcgagccgc 710
>ISCARN41
Length = 1113
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 211 gacggtggcgatca 224
||||||||||||||
Sbjct: 699 gacggtggcgatca 686
>ISCausp2
Length = 7915
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 132 ccagggtcgggttt 145
||||||||||||||
Sbjct: 4486 ccagggtcgggttt 4473
>ISPst3
Length = 2606
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 216 tggcgatcagcgcg 229
||||||||||||||
Sbjct: 1199 tggcgatcagcgcg 1186
>ISCod1
Length = 1438
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 1 cgccagctggaatg 14
||||||||||||||
Sbjct: 1145 cgccagctggaatg 1132
>ISBlma3
Length = 1388
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 165 gctttggaatcggc 178
||||||||||||||
Sbjct: 252 gctttggaatcggc 265
>ISShsp1
Length = 1404
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 84 gccgctcaccatga 97
||||||||||||||
Sbjct: 1072 gccgctcaccatga 1059
>ISXc6
Length = 1500
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 210 cgacggtggcgatc 223
||||||||||||||
Sbjct: 1136 cgacggtggcgatc 1149
>IS1478
Length = 1207
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 210 cgacggtggcgatc 223
||||||||||||||
Sbjct: 842 cgacggtggcgatc 855
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_241_length_255_cov_0.820225_ID_5652
(255 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISAs33 | IS3 | IS3 | Aeromonas salmonicida | 32 | 0.32 |
| ISAve4 | IS3 | IS3 | Aeromonas veronii | 32 | 0.32 |
| ISSen4 | IS3 | IS407 | Salmonella enterica | 32 | 0.32 |
| ISPaen1 | IS1380 | Paenibacillus sp. | 32 | 0.32 | |
| ISYen3 | IS3 | IS407 | Yersinia enterocolitica | 32 | 0.32 |
| ISRaq1 | IS3 | IS407 | Rahnella aquatilis | 32 | 0.32 |
| ISEhe4 | IS3 | IS407 | Erwinia herbicola | 32 | 0.32 |
| IS426 | IS3 | IS2 | Agrobacterium tumefaciens | 32 | 0.32 |
| IS1222 | IS3 | IS407 | Enterobacter agglomerans | 32 | 0.32 |
| ISSal1 | IS66 | Shewanella algae | 30 | 1.3 | |
| ISSiac4 | ISKra4 | ISKra4 | Singulisphaera acidiphila | 30 | 1.3 |
| ISH31 | ISH6 | Halobacterium sp. | 30 | 1.3 | |
| ISRel5 | IS21 | Rhizobium etli | 30 | 1.3 | |
| ISHla10 | ISH6 | Halorubrum lacusprofundi | 30 | 1.3 | |
| ISHpr1 | IS200/IS605 | IS1341 | Haloferax prahovense | 28 | 5.0 |
| ISSoc14 | IS200/IS605 | IS1341 | Synechococcus sp | 28 | 5.0 |
| ISNamo24 | IS200/IS605 | IS1341 | Natronomonas moolapensis | 28 | 5.0 |
| ISAba28 | IS66 | Acinetobacter baumannii | 28 | 5.0 | |
| ISNma5 | IS630 | Natrialba magadii | 28 | 5.0 | |
| ISStma16 | IS5 | IS1031 | Stenotrophomonas maltophilia | 28 | 5.0 |
| ISEc37 | IS91 | Escherichia coli | 28 | 5.0 | |
| ISAzs2 | IS21 | Azospirillum sp. | 28 | 5.0 | |
| ISNph10 | IS200/IS605 | IS1341 | Natronomonas pharaonis | 28 | 5.0 |
| ISAba13 | IS5 | IS903 | Acinetobacter baumannii | 28 | 5.0 |
| ISMae26 | IS630 | Microcystis aeruginosa | 28 | 5.0 | |
| ISTel3 | IS200/IS605 | IS1341 | Thermosynechococcus elongatus | 28 | 5.0 |
| ISSlsp2 | IS5 | IS5 | Sulfurovum sp. | 28 | 5.0 |
| ISPfr18 | ISL3 | Propionibacterium freudenreichii | 28 | 5.0 | |
| ISNml2 | IS1380 | Nakamurella multipartita | 28 | 5.0 | |
| ISMex14 | IS256 | Methylobacterium extorquens | 28 | 5.0 | |
| ISAzo30 | IS630 | Azoarcus sp. | 28 | 5.0 | |
| ISCARN18 | IS110 | IS1111 | Metagenomic data from CARNOULES | 28 | 5.0 |
| ISRm32 | IS1595 | ISNwi1 | Sinorhizobium meliloti | 28 | 5.0 |
| ISSpu15 | IS21 | Shewanella putrefaciens | 28 | 5.0 | |
| ISHma12 | IS200/IS605 | Haloarcula marismortui | 28 | 5.0 | |
| ISAav1 | IS21 | - | Acidovorax avenae | 28 | 5.0 |
| IS91 | IS91 | - | Escherichia coli | 28 | 5.0 |
| IS469 | ISL3 | - | Streptomyces coelicolor | 28 | 5.0 |
| IS17 | IS5 | IS903 | Acinetobacter haemolyticus | 28 | 5.0 |
>ISAs33
Length = 1239
Score = 32.2 bits (16), Expect = 0.32
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 181 tgcgttcggattgcag 196
||||||||||||||||
Sbjct: 225 tgcgttcggattgcag 210
>ISAve4
Length = 1239
Score = 32.2 bits (16), Expect = 0.32
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 181 tgcgttcggattgcag 196
||||||||||||||||
Sbjct: 225 tgcgttcggattgcag 210
>ISSen4
Length = 1221
Score = 32.2 bits (16), Expect = 0.32
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 160 ttcatgggaatgtcctcatg 179
|||||||| |||||||||||
Sbjct: 76 ttcatggggatgtcctcatg 57
>ISPaen1
Length = 1851
Score = 32.2 bits (16), Expect = 0.32
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 134 cgagctcttcggccgtgtag 153
|||||| |||||||||||||
Sbjct: 438 cgagcttttcggccgtgtag 419
>ISYen3
Length = 1140
Score = 32.2 bits (16), Expect = 0.32
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 160 ttcatgggaatgtcctcatg 179
|||||||| |||||||||||
Sbjct: 76 ttcatggggatgtcctcatg 57
>ISRaq1
Length = 1221
Score = 32.2 bits (16), Expect = 0.32
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 160 ttcatgggaatgtcctcatg 179
|||||||| |||||||||||
Sbjct: 76 ttcatggggatgtcctcatg 57
>ISEhe4
Length = 1221
Score = 32.2 bits (16), Expect = 0.32
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 160 ttcatgggaatgtcctcatg 179
|||||||| |||||||||||
Sbjct: 76 ttcatggggatgtcctcatg 57
>IS426
Length = 1319
Score = 32.2 bits (16), Expect = 0.32
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 123 atcgcgaaaggcgagc 138
||||||||||||||||
Sbjct: 641 atcgcgaaaggcgagc 656
>IS1222
Length = 1221
Score = 32.2 bits (16), Expect = 0.32
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 160 ttcatgggaatgtcctcatg 179
|||||||| |||||||||||
Sbjct: 76 ttcatggggatgtcctcatg 57
>ISSal1
Length = 2528
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 74 tggcggcgatgtccg 88
|||||||||||||||
Sbjct: 1072 tggcggcgatgtccg 1058
>ISSiac4
Length = 1519
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 237 tgcggccttcggcgg 251
|||||||||||||||
Sbjct: 799 tgcggccttcggcgg 785
>ISH31
Length = 1445
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 73 ttggcggcgatgtcc 87
|||||||||||||||
Sbjct: 465 ttggcggcgatgtcc 451
>ISRel5
Length = 2587
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 88 gccggcagctcgctt 102
|||||||||||||||
Sbjct: 1782 gccggcagctcgctt 1796
>ISHla10
Length = 1444
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 73 ttggcggcgatgtcc 87
|||||||||||||||
Sbjct: 464 ttggcggcgatgtcc 450
>ISHpr1
Length = 1561
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 115 cgcacttcatcgcg 128
||||||||||||||
Sbjct: 1242 cgcacttcatcgcg 1255
>ISSoc14
Length = 1370
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 59 tgccgagcttgacc 72
||||||||||||||
Sbjct: 995 tgccgagcttgacc 982
>ISNamo24
Length = 1424
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 65 gcttgaccttggcg 78
||||||||||||||
Sbjct: 866 gcttgaccttggcg 853
>ISAba28
Length = 2740
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 105 caggaagacgcgca 118
||||||||||||||
Sbjct: 2086 caggaagacgcgca 2073
>ISNma5
Length = 1055
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 86 ccgccggcagctcg 99
||||||||||||||
Sbjct: 444 ccgccggcagctcg 431
>ISStma16
Length = 846
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 14 ccagaatctgctgc 27
||||||||||||||
Sbjct: 638 ccagaatctgctgc 625
>ISEc37
Length = 1828
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 20 tctgctgccagcgc 33
||||||||||||||
Sbjct: 1091 tctgctgccagcgc 1078
>ISAzs2
Length = 2609
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 82 atgtccgccggcag 95
||||||||||||||
Sbjct: 1312 atgtccgccggcag 1325
>ISNph10
Length = 1359
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 65 gcttgaccttggcg 78
||||||||||||||
Sbjct: 861 gcttgaccttggcg 848
>ISAba13
Length = 1039
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 51 catgtgcttgccga 64
||||||||||||||
Sbjct: 694 catgtgcttgccga 681
>ISMae26
Length = 1030
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 134 cgagctcttcggcc 147
||||||||||||||
Sbjct: 587 cgagctcttcggcc 574
>ISTel3
Length = 1323
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 23 gctgccagcgctcg 36
||||||||||||||
Sbjct: 217 gctgccagcgctcg 204
>ISSlsp2
Length = 1570
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 36 gtgatcctgtttgg 49
||||||||||||||
Sbjct: 1285 gtgatcctgtttgg 1272
>ISPfr18
Length = 1437
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 135 gagctcttcggccg 148
||||||||||||||
Sbjct: 848 gagctcttcggccg 835
>ISNml2
Length = 1689
Score = 28.2 bits (14), Expect = 5.0
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 69 gaccttggcggcgatgtc 86
||||||||||| ||||||
Sbjct: 933 gaccttggcggtgatgtc 916
>ISMex14
Length = 1381
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 4 ccgcgcttgaccag 17
||||||||||||||
Sbjct: 768 ccgcgcttgaccag 755
>ISAzo30
Length = 1100
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 22 tgctgccagcgctc 35
||||||||||||||
Sbjct: 522 tgctgccagcgctc 509
>ISCARN18
Length = 1561
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 74 tggcggcgatgtcc 87
||||||||||||||
Sbjct: 816 tggcggcgatgtcc 803
>ISRm32
Length = 1190
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 121 tcatcgcgaaaggc 134
||||||||||||||
Sbjct: 158 tcatcgcgaaaggc 145
>ISSpu15
Length = 2420
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 150 gtagttgacgttca 163
||||||||||||||
Sbjct: 2404 gtagttgacgttca 2417
>ISHma12
Length = 1835
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 115 cgcacttcatcgcg 128
||||||||||||||
Sbjct: 1516 cgcacttcatcgcg 1529
>ISAav1
Length = 2532
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 21 ctgctgccagcgct 34
||||||||||||||
Sbjct: 443 ctgctgccagcgct 430
>IS91
Length = 1829
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 220 ctgccagtcggtaa 233
||||||||||||||
Sbjct: 1590 ctgccagtcggtaa 1577
>IS469
Length = 1647
Score = 28.2 bits (14), Expect = 5.0
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 19 atctgctgccagcgctcg 36
||||| ||||||||||||
Sbjct: 904 atctggtgccagcgctcg 887
>IS17
Length = 1040
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 51 catgtgcttgccga 64
||||||||||||||
Sbjct: 695 catgtgcttgccga 682
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_242_length_255_cov_0.820225_ID_5654
(255 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISThsp3 | IS66 | Thiomonas sp. | 34 | 0.081 | |
| ISHarch3 | IS200/IS605 | IS1341 | Halophilic archaeon | 32 | 0.32 |
| ISMlu11 | IS256 | Micrococcus luteus | 32 | 0.32 | |
| ISMrh1 | IS256 | Mycobacterium rhodesiae | 32 | 0.32 | |
| ISNha4 | IS3 | IS407 | Nitrobacter hamburgensis | 32 | 0.32 |
| IS666 | IS256 | - | Mycobacterium avium | 32 | 0.32 |
| ISHarch2 | IS200/IS605 | IS1341 | Halophilic archaeon | 30 | 1.3 |
| ISPmar3 | IS5 | IS5 | Paracoccus marcusii | 30 | 1.3 |
| IS2606 | IS256 | - | Mycobacterium ulcerans | 30 | 1.3 |
| ISNov1 | ISKra4 | ISAzba1 | Novosphingobium sp. | 28 | 5.0 |
| ISKra2 | ISKra4 | ISKra4 | Ktedonobacter racemifer | 28 | 5.0 |
| ISNisp4 | IS256 | Nitrobacter sp. | 28 | 5.0 | |
| ISTni2 | IS481 | Thioalkalivibrio nitratireducens | 28 | 5.0 | |
| ISPa43 | Tn3 | Pseudomonas aeruginosa | 28 | 5.0 | |
| ISAzs17 | Tn3 | Azospirillum sp. | 28 | 5.0 | |
| ISRhsp8 | IS5 | IS903 | Rhodobacter sphaeroides | 28 | 5.0 |
| ISRhba5 | IS5 | IS903 | Rhodobacterales bacterium | 28 | 5.0 |
| ISRhsp6 | IS5 | IS5 | Rhodobacter sphaeroides | 28 | 5.0 |
| ISMtsp14 | IS5 | IS1031 | Methylobacterium sp. | 28 | 5.0 |
| ISGosp1 | IS1380 | Gordonia sp. | 28 | 5.0 | |
| ISBuce1 | IS1182 | Burkholderia cepacia | 28 | 5.0 | |
| ISAar2 | IS110 | Arthrobacter arilaitensis | 28 | 5.0 | |
| ISMdi10 | IS110 | IS1111 | Methylobacterium dichloromethanicum | 28 | 5.0 |
| ISMdi13 | IS256 | Methylobacterium dichloromethanicum | 28 | 5.0 | |
| ISStma1 | IS481 | Stenotrophomonas maltophilia | 28 | 5.0 | |
| ISStma3 | IS481 | Stenotrophomonas maltophilia | 28 | 5.0 | |
| ISCARN110 | IS91 | Metagenomic data from CARNOULES | 28 | 5.0 | |
| ISAcma9 | IS5 | IS1031 | Acaryochloris marina | 28 | 5.0 |
| ISThsp9 | Tn3 | Thiomonas sp. | 28 | 5.0 | |
| ISAeh1 | IS66 | Alkalilimnicola ehrlichei | 28 | 5.0 | |
| ISTth7 | IS5 | Thermus thermophilus | 28 | 5.0 | |
| ISSsp2 | IS3 | IS150 | Sphingomonas sp. | 28 | 5.0 |
| ISMmg5 | IS1595 | ISSod11 | Magnetospirillum magnetotacticum | 28 | 5.0 |
| ISCmi3 | IS30 | Clavibacter michiganensis | 28 | 5.0 | |
| ISEc11 | IS110 | IS1111 | Escherichia coli | 28 | 5.0 |
| ISPpa3 | IS5 | IS903 | Paracoccus pantotrophus | 28 | 5.0 |
| ISSso1 | IS110 | IS1111 | Shigella sonnei | 28 | 5.0 |
| ISSco2 | IS481 | Streptomyces coelicolor | 28 | 5.0 | |
| ISRtr1 | IS256 | - | Rhizobium tropici | 28 | 5.0 |
| ISBm3 | IS481 | - | Brucella melitensis | 28 | 5.0 |
| IS1648 | IS5 | IS427 | Streptomyces coelicolor | 28 | 5.0 |
| IS1032 | IS5 | IS1031 | Acetobacter xylinum | 28 | 5.0 |
>ISThsp3
Length = 2455
Score = 34.2 bits (17), Expect = 0.081
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 230 gctcggcacgctggtgc 246
|||||||||||||||||
Sbjct: 972 gctcggcacgctggtgc 956
>ISHarch3
Length = 1819
Score = 32.2 bits (16), Expect = 0.32
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 221 cggcgggacgctcggc 236
||||||||||||||||
Sbjct: 551 cggcgggacgctcggc 566
>ISMlu11
Length = 1434
Score = 32.2 bits (16), Expect = 0.32
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 92 cccgccggccagcgca 107
||||||||||||||||
Sbjct: 1282 cccgccggccagcgca 1297
>ISMrh1
Length = 1472
Score = 32.2 bits (16), Expect = 0.32
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 64 tcaccgcacccgccgc 79
||||||||||||||||
Sbjct: 372 tcaccgcacccgccgc 357
>ISNha4
Length = 1266
Score = 32.2 bits (16), Expect = 0.32
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 200 ccgccagatacgctcg 215
||||||||||||||||
Sbjct: 602 ccgccagatacgctcg 587
>IS666
Length = 1472
Score = 32.2 bits (16), Expect = 0.32
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 64 tcaccgcacccgccgc 79
||||||||||||||||
Sbjct: 372 tcaccgcacccgccgc 357
>ISHarch2
Length = 1604
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 221 cggcgggacgctcgg 235
|||||||||||||||
Sbjct: 447 cggcgggacgctcgg 461
>ISPmar3
Length = 1282
Score = 30.2 bits (15), Expect = 1.3
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 15 gatcgctacgccagcctgg 33
||||||||||| |||||||
Sbjct: 105 gatcgctacgcgagcctgg 123
>IS2606
Length = 1404
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 129 accccgggcgccagc 143
|||||||||||||||
Sbjct: 951 accccgggcgccagc 965
>ISNov1
Length = 2277
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 94 cgccggccagcgca 107
||||||||||||||
Sbjct: 1807 cgccggccagcgca 1794
>ISKra2
Length = 1665
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 39 atcagcgccgatgg 52
||||||||||||||
Sbjct: 703 atcagcgccgatgg 716
>ISNisp4
Length = 1418
Score = 28.2 bits (14), Expect = 5.0
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 29 cctggtgctgatcagcgc 46
||||||||||||| ||||
Sbjct: 684 cctggtgctgatcggcgc 701
>ISTni2
Length = 3451
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 50 tggccgacgccttc 63
||||||||||||||
Sbjct: 1864 tggccgacgccttc 1877
>ISPa43
Length = 19903
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 195 ctggcccgccagat 208
||||||||||||||
Sbjct: 7543 ctggcccgccagat 7530
>ISAzs17
Length = 7252
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 236 cacgctggtgctgc 249
||||||||||||||
Sbjct: 1962 cacgctggtgctgc 1949
>ISRhsp8
Length = 1054
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 110 ctggctggacaagg 123
||||||||||||||
Sbjct: 153 ctggctggacaagg 166
>ISRhba5
Length = 1053
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 110 ctggctggacaagg 123
||||||||||||||
Sbjct: 153 ctggctggacaagg 166
>ISRhsp6
Length = 1486
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 32 ggtgctgatcagcg 45
||||||||||||||
Sbjct: 1175 ggtgctgatcagcg 1188
>ISMtsp14
Length = 860
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 105 gcacactggctgga 118
||||||||||||||
Sbjct: 774 gcacactggctgga 787
>ISGosp1
Length = 1642
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 62 tctcaccgcacccg 75
||||||||||||||
Sbjct: 1031 tctcaccgcacccg 1044
>ISBuce1
Length = 1339
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 163 gcgacgcagcaacg 176
||||||||||||||
Sbjct: 635 gcgacgcagcaacg 648
>ISAar2
Length = 1473
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 195 ctggcccgccagat 208
||||||||||||||
Sbjct: 980 ctggcccgccagat 993
>ISMdi10
Length = 1186
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 42 agcgccgatggccg 55
||||||||||||||
Sbjct: 975 agcgccgatggccg 962
>ISMdi13
Length = 1416
Score = 28.2 bits (14), Expect = 5.0
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 29 cctggtgctgatcagcgc 46
||||||||||||| ||||
Sbjct: 682 cctggtgctgatcggcgc 699
>ISStma1
Length = 1023
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 20 ctacgccagcctgg 33
||||||||||||||
Sbjct: 692 ctacgccagcctgg 705
>ISStma3
Length = 1023
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 20 ctacgccagcctgg 33
||||||||||||||
Sbjct: 692 ctacgccagcctgg 705
>ISCARN110
Length = 2294
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 72 cccgccgcaaccgc 85
||||||||||||||
Sbjct: 1961 cccgccgcaaccgc 1974
>ISAcma9
Length = 896
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 150 gtgatgctcaatcg 163
||||||||||||||
Sbjct: 389 gtgatgctcaatcg 402
>ISThsp9
Length = 6215
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 42 agcgccgatggccg 55
||||||||||||||
Sbjct: 5879 agcgccgatggccg 5866
>ISAeh1
Length = 2320
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 73 ccgccgcaaccgct 86
||||||||||||||
Sbjct: 1246 ccgccgcaaccgct 1259
>ISTth7
Length = 1029
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 67 ccgcacccgccgca 80
||||||||||||||
Sbjct: 541 ccgcacccgccgca 528
>ISSsp2
Length = 1511
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 43 gcgccgatggccga 56
||||||||||||||
Sbjct: 628 gcgccgatggccga 615
>ISMmg5
Length = 1101
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 231 ctcggcacgctggt 244
||||||||||||||
Sbjct: 729 ctcggcacgctggt 742
>ISCmi3
Length = 1459
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 67 ccgcacccgccgca 80
||||||||||||||
Sbjct: 851 ccgcacccgccgca 864
>ISEc11
Length = 1443
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 106 cacactggctggac 119
||||||||||||||
Sbjct: 1068 cacactggctggac 1055
>ISPpa3
Length = 1054
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 110 ctggctggacaagg 123
||||||||||||||
Sbjct: 154 ctggctggacaagg 167
>ISSso1
Length = 1443
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 106 cacactggctggac 119
||||||||||||||
Sbjct: 1068 cacactggctggac 1055
>ISSco2
Length = 1964
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 61 ttctcaccgcaccc 74
||||||||||||||
Sbjct: 868 ttctcaccgcaccc 881
>ISRtr1
Length = 1364
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 46 ccgatggccgacgc 59
||||||||||||||
Sbjct: 658 ccgatggccgacgc 671
>ISBm3
Length = 1022
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 46 ccgatggccgacgc 59
||||||||||||||
Sbjct: 539 ccgatggccgacgc 526
>IS1648
Length = 969
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 72 cccgccgcaaccgc 85
||||||||||||||
Sbjct: 673 cccgccgcaaccgc 686
>IS1032
Length = 916
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 12 cccgatcgctacgc 25
||||||||||||||
Sbjct: 731 cccgatcgctacgc 718
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_243_length_255_cov_0.808989_ID_5656
(255 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISNfa1 | IS481 | Nocardia farcinica | 36 | 0.021 | |
| ISAzs20 | IS66 | Azospirillum sp. | 32 | 0.32 | |
| ISSfr1 | IS110 | IS1111 | Sinorhizobium fredii | 32 | 0.32 |
| ISEnfa5 | IS3 | IS150 | Enterococcus faecalis | 30 | 1.3 |
| ISMch9 | IS5 | IS427 | Methylobacterium chloromethanicum | 30 | 1.3 |
| ISAnsp14 | IS256 | Anaeromyxobacter sp. | 30 | 1.3 | |
| ISMdi24 | IS5 | IS427 | Methylobacterium dichloromethanicum | 30 | 1.3 |
| ISMex19 | IS5 | IS427 | Methylobacterium extorquens | 30 | 1.3 |
| ISvEsV1_1 | IS4 | IS4 | Ectocarpus siliculosus | 30 | 1.3 |
| ISKpn23 | IS1380 | Klebsiella pneumoniae | 28 | 5.0 | |
| ISAzs23 | IS3 | IS3 | Azospirillum sp. | 28 | 5.0 |
| ISEc35 | IS5 | IS903 | Escherichia coli | 28 | 5.0 |
| ISShes11 | Tn3 | Shewanella sp. | 28 | 5.0 | |
| ISCpo1 | ISNCY | ISDol1 | Candidatus Poribacteria sp. | 28 | 5.0 |
| ISGvi6 | IS1182 | Gloeobacter violaceus | 28 | 5.0 | |
| ISUnCu2 | IS5 | IS5 | Uncultured bacterium | 28 | 5.0 |
| ISStau6 | ISAzo13 | Stigmatella aurantiaca | 28 | 5.0 | |
| ISRhru4 | IS256 | Rhodospirillum rubrum | 28 | 5.0 | |
| ISMex1 | IS3 | IS407 | Methylobacterium extorquens | 28 | 5.0 |
| ISThsp12 | IS1634 | Thiomonas sp. | 28 | 5.0 | |
| ISThsp9 | Tn3 | Thiomonas sp. | 28 | 5.0 | |
| ISSba14 | Tn3 | Shewanella baltica | 28 | 5.0 | |
| ISBrsp5 | IS66 | ISBst12 | Bradyrhizobium sp. | 28 | 5.0 |
| ISNeu3 | IS5 | IS427 | Nitrosomonas europaea | 28 | 5.0 |
| ISBcen2 | IS110 | IS1111 | Burkholderia cenocepacia | 28 | 5.0 |
| IS71 | IS66 | - | Agrobacterium tumefaciens | 28 | 5.0 |
| IS1071 | Tn3 | - | Alcaligenes sp | 28 | 5.0 |
| IS1001 | ISL3 | - | Bordetella parapertussis | 28 | 5.0 |
>ISNfa1
Length = 1112
Score = 36.2 bits (18), Expect = 0.021
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 199 gcatcatcgcccaccgtc 216
||||||||||||||||||
Sbjct: 513 gcatcatcgcccaccgtc 530
>ISAzs20
Length = 2811
Score = 32.2 bits (16), Expect = 0.32
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 210 caccgtctccagcgccagcg 229
||||| ||||||||||||||
Sbjct: 2060 caccgcctccagcgccagcg 2041
>ISSfr1
Length = 1359
Score = 32.2 bits (16), Expect = 0.32
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 190 aactggccggcatcat 205
||||||||||||||||
Sbjct: 54 aactggccggcatcat 39
>ISEnfa5
Length = 1686
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 193 tggccggcatcatcg 207
|||||||||||||||
Sbjct: 1320 tggccggcatcatcg 1306
>ISMch9
Length = 848
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 192 ctggccggcatcatc 206
|||||||||||||||
Sbjct: 148 ctggccggcatcatc 162
>ISAnsp14
Length = 1629
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 210 caccgtctccagcgc 224
|||||||||||||||
Sbjct: 165 caccgtctccagcgc 151
>ISMdi24
Length = 849
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 192 ctggccggcatcatc 206
|||||||||||||||
Sbjct: 149 ctggccggcatcatc 163
>ISMex19
Length = 849
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 192 ctggccggcatcatc 206
|||||||||||||||
Sbjct: 149 ctggccggcatcatc 163
>ISvEsV1_1
Length = 3603
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 169 ttgccgaacaacatg 183
|||||||||||||||
Sbjct: 3219 ttgccgaacaacatg 3205
>ISKpn23
Length = 1671
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 60 gcggaggcgctcgc 73
||||||||||||||
Sbjct: 1439 gcggaggcgctcgc 1426
>ISAzs23
Length = 1596
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 212 ccgtctccagcgcc 225
||||||||||||||
Sbjct: 441 ccgtctccagcgcc 454
>ISEc35
Length = 1051
Score = 28.2 bits (14), Expect = 5.0
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 204 atcgcccaccgtctccag 221
|||||||||||| |||||
Sbjct: 593 atcgcccaccgtttccag 576
>ISShes11
Length = 7669
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 129 ggccacgtcgagca 142
||||||||||||||
Sbjct: 2248 ggccacgtcgagca 2235
>ISCpo1
Length = 1918
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 102 cagaaaatcgggca 115
||||||||||||||
Sbjct: 369 cagaaaatcgggca 382
>ISGvi6
Length = 1662
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 190 aactggccggcatc 203
||||||||||||||
Sbjct: 217 aactggccggcatc 230
>ISUnCu2
Length = 1491
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 180 catgttgagcaact 193
||||||||||||||
Sbjct: 190 catgttgagcaact 177
>ISStau6
Length = 1304
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 111 gggcaggccgtccg 124
||||||||||||||
Sbjct: 304 gggcaggccgtccg 317
>ISRhru4
Length = 1411
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 198 ggcatcatcgccca 211
||||||||||||||
Sbjct: 1323 ggcatcatcgccca 1310
>ISMex1
Length = 1200
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 129 ggccacgtcgagca 142
||||||||||||||
Sbjct: 296 ggccacgtcgagca 283
>ISThsp12
Length = 2004
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 209 ccaccgtctccagc 222
||||||||||||||
Sbjct: 582 ccaccgtctccagc 569
>ISThsp9
Length = 6215
Score = 28.2 bits (14), Expect = 5.0
Identities = 20/22 (90%)
Strand = Plus / Minus
Query: 117 gccgtccggccaggccacgtcg 138
|||||||| | |||||||||||
Sbjct: 3888 gccgtccgccgaggccacgtcg 3867
>ISSba14
Length = 3815
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 186 gagcaactggccgg 199
||||||||||||||
Sbjct: 382 gagcaactggccgg 369
>ISBrsp5
Length = 1541
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 221 gcgccagcgcaata 234
||||||||||||||
Sbjct: 555 gcgccagcgcaata 568
>ISNeu3
Length = 843
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 21 cggtttgatcgcgg 34
||||||||||||||
Sbjct: 664 cggtttgatcgcgg 651
>ISBcen2
Length = 1363
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 136 tcgagcacgctcac 149
||||||||||||||
Sbjct: 610 tcgagcacgctcac 597
>IS71
Length = 2386
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 33 ggagcagttgatcg 46
||||||||||||||
Sbjct: 2057 ggagcagttgatcg 2044
>IS1071
Length = 3201
Score = 28.2 bits (14), Expect = 5.0
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 195 gccggcatcatcgcccac 212
||||||||||| ||||||
Sbjct: 1925 gccggcatcatggcccac 1942
>IS1001
Length = 1306
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 113 gcaggccgtccggc 126
||||||||||||||
Sbjct: 943 gcaggccgtccggc 956
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_244_length_254_cov_0.819209_ID_5658
(254 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISApr8 | IS1380 | alpha proteobacterium | 34 | 0.081 | |
| IS1066 | IS630 | - | Pseudomonas sp. | 34 | 0.081 |
| ISAli4 | IS3 | IS51 | Azospirillum lipoferum | 32 | 0.32 |
| ISBlo11 | IS3 | IS150 | Bifidobacterium longum | 32 | 0.32 |
| IS1632 | IS256 | - | Bradyrhizobium japonicum | 32 | 0.32 |
| TnAs3 | Tn3 | Aeromonas salmonicida | 30 | 1.3 | |
| ISUnCu17 | IS1182 | Uncultured bacteria | 30 | 1.3 | |
| IS3509 | IS256 | IS1249 | Corynebacterium jeikeium | 30 | 1.3 |
| ISNamo5 | IS701 | Natronomonas moolapensis | 30 | 1.3 | |
| ISAzs2 | IS21 | Azospirillum sp. | 30 | 1.3 | |
| ISShes11 | Tn3 | Shewanella sp. | 30 | 1.3 | |
| ISAar12 | IS1380 | Arthrobacter arilaitensis | 30 | 1.3 | |
| ISMca7 | IS5 | IS5 | Methylococcus capsulatus | 30 | 1.3 |
| ISAmas1 | IS256 | IS1249 | Actinobaculum massiliae | 30 | 1.3 |
| ISHala1 | IS701 | Halobiforma lacisalsi | 30 | 1.3 | |
| ISNpe1 | IS701 | Natrinema pellirubrum | 30 | 1.3 | |
| TnAs1 | Tn3 | Aeromonas salmonicida | 28 | 5.0 | |
| ISSpwi2 | IS256 | Sphingomonas wittichii | 28 | 5.0 | |
| ISPaes3 | IS256 | Paracoccus aestuarii | 28 | 5.0 | |
| ISDth2 | ISNCY | ISDol1 | Desulfonatronospira thiodismutans | 28 | 5.0 |
| ISAau2 | IS21 | Arthrobacter aurescens | 28 | 5.0 | |
| ISAar27 | IS481 | Arthrobacter arilaitensis | 28 | 5.0 | |
| ISAzo1 | IS1182 | Azoarcus sp. | 28 | 5.0 | |
| ISAnsp12 | IS66 | Anaeromyxobacter sp. | 28 | 5.0 | |
| ISSpo2 | IS1380 | Silicibacter pomeroyi | 28 | 5.0 | |
| ISHch2 | IS4 | IS4 | Hahella chejuensis | 28 | 5.0 |
| ISRle3 | IS66 | Rhizobium leguminosarum | 28 | 5.0 | |
| ISSysp1 | IS1595 | IS1595 | Synechococcus sp | 28 | 5.0 |
| ISRl1 | IS66 | - | Rhizobium leguminosarum | 28 | 5.0 |
| ISRj1 | IS630 | - | Bradyrhizobium japonicum | 28 | 5.0 |
| IS469 | ISL3 | - | Streptomyces coelicolor | 28 | 5.0 |
| IS426 | IS3 | IS2 | Agrobacterium tumefaciens | 28 | 5.0 |
>ISApr8
Length = 1667
Score = 34.2 bits (17), Expect = 0.081
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 31 cgaaggcggcatcgccc 47
|||||||||||||||||
Sbjct: 808 cgaaggcggcatcgccc 792
>IS1066
Length = 1137
Score = 34.2 bits (17), Expect = 0.081
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 104 atggcgctgagcctgtccgac 124
|||||||||||| ||||||||
Sbjct: 417 atggcgctgagcgtgtccgac 437
>ISAli4
Length = 1324
Score = 32.2 bits (16), Expect = 0.32
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 19 cgatgcggcgctcgaaggcg 38
||||||||||| ||||||||
Sbjct: 863 cgatgcggcgcgcgaaggcg 844
>ISBlo11
Length = 1432
Score = 32.2 bits (16), Expect = 0.32
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 157 cctgcgcgaacaggccggcg 176
||||| ||||||||||||||
Sbjct: 696 cctgctcgaacaggccggcg 677
>IS1632
Length = 1394
Score = 32.2 bits (16), Expect = 0.32
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 214 ccaggcgaccgcctcc 229
||||||||||||||||
Sbjct: 368 ccaggcgaccgcctcc 383
>TnAs3
Length = 18735
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 34 aggcggcatcgccct 48
|||||||||||||||
Sbjct: 18112 aggcggcatcgccct 18098
>ISUnCu17
Length = 1481
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 10 cgtccgcgtcgatgc 24
|||||||||||||||
Sbjct: 925 cgtccgcgtcgatgc 939
>IS3509
Length = 1380
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 29 ctcgaaggcggcatc 43
|||||||||||||||
Sbjct: 1035 ctcgaaggcggcatc 1049
>ISNamo5
Length = 1277
Score = 30.2 bits (15), Expect = 1.3
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 27 cgctcgaaggcggcatcgc 45
|||||||||||| ||||||
Sbjct: 1106 cgctcgaaggcgtcatcgc 1124
>ISAzs2
Length = 2609
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 162 gcgaacaggccggcg 176
|||||||||||||||
Sbjct: 1102 gcgaacaggccggcg 1088
>ISShes11
Length = 7669
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 34 aggcggcatcgccct 48
|||||||||||||||
Sbjct: 7046 aggcggcatcgccct 7032
>ISAar12
Length = 1736
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 97 cagcgatatggcgct 111
|||||||||||||||
Sbjct: 1634 cagcgatatggcgct 1648
>ISMca7
Length = 1172
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 83 cttcagggccacgcc 97
|||||||||||||||
Sbjct: 801 cttcagggccacgcc 787
>ISAmas1
Length = 1411
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 29 ctcgaaggcggcatc 43
|||||||||||||||
Sbjct: 1051 ctcgaaggcggcatc 1065
>ISHala1
Length = 1277
Score = 30.2 bits (15), Expect = 1.3
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 27 cgctcgaaggcggcatcgc 45
|||||||||||| ||||||
Sbjct: 1106 cgctcgaaggcgtcatcgc 1124
>ISNpe1
Length = 1277
Score = 30.2 bits (15), Expect = 1.3
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 27 cgctcgaaggcggcatcgc 45
|||||||||||| ||||||
Sbjct: 1106 cgctcgaaggcgtcatcgc 1124
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 12 tccgcgtcgatgcg 25
||||||||||||||
Sbjct: 720 tccgcgtcgatgcg 733
>TnAs1
Length = 6694
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 10 cgtccgcgtcgatg 23
||||||||||||||
Sbjct: 2491 cgtccgcgtcgatg 2478
>ISSpwi2
Length = 1322
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 28 gctcgaaggcggca 41
||||||||||||||
Sbjct: 142 gctcgaaggcggca 129
>ISPaes3
Length = 1393
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 25 ggcgctcgaaggcg 38
||||||||||||||
Sbjct: 387 ggcgctcgaaggcg 400
>ISDth2
Length = 1658
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 79 gcaacttcagggcc 92
||||||||||||||
Sbjct: 1332 gcaacttcagggcc 1345
>ISAau2
Length = 2222
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 201 gtggcggccggatc 214
||||||||||||||
Sbjct: 695 gtggcggccggatc 708
>ISAar27
Length = 1669
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 23 gcggcgctcgaagg 36
||||||||||||||
Sbjct: 1567 gcggcgctcgaagg 1580
>ISAzo1
Length = 1545
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 160 gcgcgaacaggccg 173
||||||||||||||
Sbjct: 715 gcgcgaacaggccg 728
>ISAnsp12
Length = 2926
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 28 gctcgaaggcggca 41
||||||||||||||
Sbjct: 2804 gctcgaaggcggca 2817
>ISSpo2
Length = 1664
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 31 cgaaggcggcatcg 44
||||||||||||||
Sbjct: 809 cgaaggcggcatcg 796
>ISHch2
Length = 1633
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 164 gaacaggccggcgt 177
||||||||||||||
Sbjct: 858 gaacaggccggcgt 871
>ISRle3
Length = 2500
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 199 cggtggcggccgga 212
||||||||||||||
Sbjct: 2316 cggtggcggccgga 2329
>ISSysp1
Length = 1032
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 187 caccttgttctccg 200
||||||||||||||
Sbjct: 571 caccttgttctccg 558
>ISRl1
Length = 2495
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 199 cggtggcggccgga 212
||||||||||||||
Sbjct: 2311 cggtggcggccgga 2324
>ISRj1
Length = 1122
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 22 tgcggcgctcgaag 35
||||||||||||||
Sbjct: 692 tgcggcgctcgaag 705
>IS469
Length = 1647
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 168 aggccggcgttgac 181
||||||||||||||
Sbjct: 1480 aggccggcgttgac 1467
>IS426
Length = 1319
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 219 cgaccgcctccaac 232
||||||||||||||
Sbjct: 955 cgaccgcctccaac 942
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_245_length_254_cov_0.824859_ID_5660
(254 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| IS3506 | IS256 | Corynebacterium jeikeium | 32 | 0.32 | |
| ISUnCu12 | IS1380 | Uncultured marine microorganism | 32 | 0.32 | |
| ISHca1 | IS200/IS605 | IS1341 | Halorubrum californiensis | 30 | 1.3 |
| IS1087B | IS3 | IS2 | Ralstonia metallidurans | 30 | 1.3 |
| ISXo2 | IS1595 | IS1595 | Xanthomomas oryzae | 30 | 1.3 |
| IS1087 | IS3 | IS2 | Ralstonia eutropha | 30 | 1.3 |
| ISAzs20 | IS66 | Azospirillum sp. | 28 | 5.0 | |
| ISXo4 | IS5 | IS5 | Xanthomonas oryzae | 28 | 5.0 |
| ISPfr21 | IS481 | Propionibacterium freudenreichii | 28 | 5.0 | |
| ISMdi12 | IS110 | IS1111 | Methylobacterium dichloromethanicum | 28 | 5.0 |
| ISMex5 | IS3 | IS407 | Methylobacterium extorquens | 28 | 5.0 |
| ISAzo15 | IS66 | Azoarcus sp. | 28 | 5.0 | |
| ISBj7_B | IS66 | Bradyrhizobium japonicum | 28 | 5.0 | |
| ISFpe1 | IS66 | Fulvimarina pelagi | 28 | 5.0 | |
| ISBlma9 | IS66 | Blastopirellula marina | 28 | 5.0 | |
| ISLxc1 | IS21 | Leifsonia xyli | 28 | 5.0 | |
| ISSsp2 | IS3 | IS150 | Sphingomonas sp. | 28 | 5.0 |
| ISOgr2 | IS3 | IS2 | Oceanicola granulosus | 28 | 5.0 |
| ISSpwi1 | IS3 | IS407 | Sphingomonas wittichii | 28 | 5.0 |
| ISBlma2 | IS4 | IS4 | Blastopirellula marina | 28 | 5.0 |
| ISBlo1 | IS21 | Bifidobacterium longum | 28 | 5.0 | |
| ISPa42 | Tn3 | Pseudomonas aeruginosa | 28 | 5.0 | |
| IS1602 | IS607 | Mycobacterium tuberculosis | 28 | 5.0 | |
| IS1114 | IS5 | - | Xanthomonas oryzae | 28 | 5.0 |
>IS3506
Length = 1423
Score = 32.2 bits (16), Expect = 0.32
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 49 gccgaaaccagtctgg 64
||||||||||||||||
Sbjct: 1097 gccgaaaccagtctgg 1112
>ISUnCu12
Length = 1597
Score = 32.2 bits (16), Expect = 0.32
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 78 gctgtcgctgctgcgt 93
||||||||||||||||
Sbjct: 700 gctgtcgctgctgcgt 715
>ISHca1
Length = 1549
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 172 cgcgcaaccgagcag 186
|||||||||||||||
Sbjct: 1161 cgcgcaaccgagcag 1175
>IS1087B
Length = 1330
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 102 gccggtggtcgccgc 116
|||||||||||||||
Sbjct: 909 gccggtggtcgccgc 895
>ISXo2
Length = 1070
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 126 tgccgggcgtgccgg 140
|||||||||||||||
Sbjct: 276 tgccgggcgtgccgg 290
>IS1087
Length = 1330
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 102 gccggtggtcgccgc 116
|||||||||||||||
Sbjct: 913 gccggtggtcgccgc 899
>ISAzs20
Length = 2811
Score = 28.2 bits (14), Expect = 5.0
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 104 cggtggtcgccgcgctgt 121
||||| ||||||||||||
Sbjct: 447 cggtgatcgccgcgctgt 464
>ISXo4
Length = 1513
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 207 ggcggtcgacccgc 220
||||||||||||||
Sbjct: 288 ggcggtcgacccgc 301
>ISPfr21
Length = 2632
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 98 tggggccggtggtc 111
||||||||||||||
Sbjct: 1596 tggggccggtggtc 1583
>ISMdi12
Length = 1371
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 207 ggcggtcgacccgc 220
||||||||||||||
Sbjct: 938 ggcggtcgacccgc 951
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 191 ccagcatggagatg 204
||||||||||||||
Sbjct: 1265 ccagcatggagatg 1252
>ISMex5
Length = 1283
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 99 ggggccggtggtcg 112
||||||||||||||
Sbjct: 1149 ggggccggtggtcg 1136
>ISAzo15
Length = 2441
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 72 ggtggcgctgtcgc 85
||||||||||||||
Sbjct: 1556 ggtggcgctgtcgc 1569
>ISBj7_B
Length = 2865
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 161 ttggcctgatgcgc 174
||||||||||||||
Sbjct: 2223 ttggcctgatgcgc 2236
>ISFpe1
Length = 2489
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 234 ctctccgcgcttct 247
||||||||||||||
Sbjct: 803 ctctccgcgcttct 816
>ISBlma9
Length = 2606
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 239 cgcgcttctgggcg 252
||||||||||||||
Sbjct: 1761 cgcgcttctgggcg 1774
>ISLxc1
Length = 3533
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 233 tctctccgcgcttc 246
||||||||||||||
Sbjct: 2105 tctctccgcgcttc 2118
>ISSsp2
Length = 1511
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 72 ggtggcgctgtcgc 85
||||||||||||||
Sbjct: 1053 ggtggcgctgtcgc 1040
>ISOgr2
Length = 1299
Score = 28.2 bits (14), Expect = 5.0
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 127 gccgggcgtgccggttcg 144
||||||||||| ||||||
Sbjct: 498 gccgggcgtgcaggttcg 481
>ISSpwi1
Length = 1269
Score = 28.2 bits (14), Expect = 5.0
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 219 gcttcgccgcgtgatctc 236
||||||||||| ||||||
Sbjct: 270 gcttcgccgcgcgatctc 287
>ISBlma2
Length = 1439
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 203 tgatggcggtcgac 216
||||||||||||||
Sbjct: 481 tgatggcggtcgac 494
>ISBlo1
Length = 2590
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 125 ttgccgggcgtgcc 138
||||||||||||||
Sbjct: 1052 ttgccgggcgtgcc 1065
>ISPa42
Length = 16941
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 68 tgctggtggcgctg 81
||||||||||||||
Sbjct: 4267 tgctggtggcgctg 4254
>IS1602
Length = 2053
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 138 cggttcggcgctga 151
||||||||||||||
Sbjct: 341 cggttcggcgctga 354
>IS1114
Length = 1519
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 207 ggcggtcgacccgc 220
||||||||||||||
Sbjct: 289 ggcggtcgacccgc 302
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_246_length_254_cov_1.0791_ID_5662
(254 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| IS1373 | IS5 | ISL2 | Streptomyces lividans | 36 | 0.020 |
| ISVsp5 | IS4 | IS4Sa | Verrucomicrobium spinosum | 34 | 0.081 |
| ISPam1 | IS5 | IS903 | Paracoccus aminophilus | 32 | 0.32 |
| ISFsp10 | IS66 | ISBst12 | Frankia sp. | 32 | 0.32 |
| ISMsm4 | ISL3 | Mycobacterium smegmatis | 32 | 0.32 | |
| ISLsp1 | IS1595 | IS1595 | Leptospirillum sp. | 32 | 0.32 |
| ISMyma9 | IS21 | Mycobacterium marinum | 30 | 1.3 | |
| ISAcp2 | IS481 | Acidobacterium capsulatum | 30 | 1.3 | |
| ISCur1 | IS1380 | Corynebacterium urealyticum | 30 | 1.3 | |
| IS1141 | IS3 | IS3 | Mycobacterium intracellulare | 30 | 1.3 |
| ISTha3 | IS91 | Thauera sp. | 28 | 5.0 | |
| TnAs3 | Tn3 | Aeromonas salmonicida | 28 | 5.0 | |
| ISHwa19 | IS200/IS605 | IS1341 | Haloquadratum walsbyi | 28 | 5.0 |
| ISHwa18 | IS200/IS605 | IS1341 | Haloquadratum walsbyi | 28 | 5.0 |
| ISNph27 | IS200/IS605 | IS1341 | Natronomonas pharaonis | 28 | 5.0 |
| ISAs14 | IS5 | IS903 | Aeromonas salmonicida | 28 | 5.0 |
| ISKpn25 | ISL3 | Klebsiella pneumoniae | 28 | 5.0 | |
| ISMyma8 | IS3 | IS407 | Mycobacterium marinum | 28 | 5.0 |
| ISPfe2 | IS1634 | Paracoccus ferrooxidans | 28 | 5.0 | |
| ISNph15 | IS200/IS605 | IS1341 | Natronomonas pharaonis | 28 | 5.0 |
| ISAnsp14 | IS256 | Anaeromyxobacter sp. | 28 | 5.0 | |
| ISRel9 | IS110 | IS1111 | Rhizobium etli | 28 | 5.0 |
| ISPlc1 | IS5 | IS903 | Paracoccus alcaliphilus | 28 | 5.0 |
| ISHwa4 | IS701 | Haloquadratum walsbyi | 28 | 5.0 | |
| ISBj2_B | IS5 | IS5 | Bradyrhizobium japonicum | 28 | 5.0 |
| ISCARN37 | ISAzo13 | Metagenomic data from CARNOULES | 28 | 5.0 | |
| ISPfr2 | ISL3 | Propionibacterium freudenreichii | 28 | 5.0 | |
| ISTro1 | IS1380 | Thiocapsa roseopersicina | 28 | 5.0 | |
| ISAde5 | IS256 | Anaeromyxobacter dehalogenans | 28 | 5.0 | |
| ISMsi4 | IS3 | IS407 | Methylocella silvestris | 28 | 5.0 |
| ISMsi2 | IS3 | IS407 | Methylocella silvestris | 28 | 5.0 |
| ISMdi7 | IS21 | Methylobacterium dichloromethanicum | 28 | 5.0 | |
| ISStma11 | ISL3 | Stenotrophomonas maltophilia | 28 | 5.0 | |
| ISMae8 | ISAs1 | Microcystis aeruginosa | 28 | 5.0 | |
| ISThsp12 | IS1634 | Thiomonas sp. | 28 | 5.0 | |
| ISBj5_B | IS5 | IS5 | Bradyrhizobium japonicum | 28 | 5.0 |
| ISAli20 | Tn3 | Azospirillum lipoferum | 28 | 5.0 | |
| ISSba14 | Tn3 | Shewanella baltica | 28 | 5.0 | |
| ISHar5 | IS30 | Herminiimonas arsenicoxydans | 28 | 5.0 | |
| ISSpo9 | IS5 | IS903 | Silicibacter pomeroyi | 28 | 5.0 |
| ISRae1 | IS481 | Rhodococcus aetherivorans | 28 | 5.0 | |
| ISMaq2 | IS3 | IS2 | Marinobacter aquaeolei | 28 | 5.0 |
| ISBvi4 | IS3 | IS3 | Burkholderia vietnamiensis | 28 | 5.0 |
| ISCod1 | IS3 | IS150 | Corynebacterium diphtheriae | 28 | 5.0 |
| ISPpa4 | IS5 | IS903 | Paracoccus pantotrophus | 28 | 5.0 |
| ISXc4 | Tn3 | - | Xanthomonas campestris | 28 | 5.0 |
| ISPps1 | IS91 | - | Pseudomonas huttiensis | 28 | 5.0 |
| ISAni1 | IS481 | - | Arthrobacter nicotinovorans | 28 | 5.0 |
| IS999 | IS3 | IS51 | Mycobacterium avium | 28 | 5.0 |
| IS1096 | ISL3 | - | Mycobacterium smegmatis | 28 | 5.0 |
>IS1373
Length = 817
Score = 36.2 bits (18), Expect = 0.020
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 130 tgccctcgtcgtcttcgg 147
||||||||||||||||||
Sbjct: 626 tgccctcgtcgtcttcgg 609
>ISVsp5
Length = 1426
Score = 34.2 bits (17), Expect = 0.081
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 166 cgcgcagcaccatgccttgcg 186
||||||||||| |||||||||
Sbjct: 819 cgcgcagcaccttgccttgcg 799
>ISPam1
Length = 1050
Score = 32.2 bits (16), Expect = 0.32
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 75 atgccgtcggcggtga 90
||||||||||||||||
Sbjct: 653 atgccgtcggcggtga 638
>ISFsp10
Length = 1713
Score = 32.2 bits (16), Expect = 0.32
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 160 cgtcgccgcgcagcac 175
||||||||||||||||
Sbjct: 604 cgtcgccgcgcagcac 589
>ISMsm4
Length = 1458
Score = 32.2 bits (16), Expect = 0.32
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 80 gtcggcggtgagcagcttgg 99
|||||||| |||||||||||
Sbjct: 1071 gtcggcggagagcagcttgg 1052
>ISLsp1
Length = 1031
Score = 32.2 bits (16), Expect = 0.32
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 202 gcagcttggtgccggc 217
||||||||||||||||
Sbjct: 322 gcagcttggtgccggc 307
>ISMyma9
Length = 2162
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 219 aaggccgcgccgcgg 233
|||||||||||||||
Sbjct: 1405 aaggccgcgccgcgg 1419
>ISAcp2
Length = 1025
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 159 ccgtcgccgcgcagc 173
|||||||||||||||
Sbjct: 547 ccgtcgccgcgcagc 533
>ISCur1
Length = 1627
Score = 30.2 bits (15), Expect = 1.3
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 71 gcgcatgccgtcggcggtg 89
||||| |||||||||||||
Sbjct: 268 gcgcaagccgtcggcggtg 286
>IS1141
Length = 1588
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 198 ccgcgcagcttggtg 212
|||||||||||||||
Sbjct: 958 ccgcgcagcttggtg 944
>ISTha3
Length = 2424
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 165 ccgcgcagcaccat 178
||||||||||||||
Sbjct: 2265 ccgcgcagcaccat 2278
>TnAs3
Length = 18735
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 59 ggtttgcagctcgc 72
||||||||||||||
Sbjct: 16062 ggtttgcagctcgc 16049
>ISHwa19
Length = 1482
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 28 gcggcacatcgaca 41
||||||||||||||
Sbjct: 286 gcggcacatcgaca 299
>ISHwa18
Length = 1449
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 28 gcggcacatcgaca 41
||||||||||||||
Sbjct: 253 gcggcacatcgaca 266
>ISNph27
Length = 1714
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 79 cgtcggcggtgagc 92
||||||||||||||
Sbjct: 352 cgtcggcggtgagc 339
>ISAs14
Length = 1062
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 121 acaggctgttgccc 134
||||||||||||||
Sbjct: 727 acaggctgttgccc 714
>ISKpn25
Length = 8154
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 118 caaacaggctgttg 131
||||||||||||||
Sbjct: 6445 caaacaggctgttg 6432
>ISMyma8
Length = 1247
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 77 gccgtcggcggtga 90
||||||||||||||
Sbjct: 855 gccgtcggcggtga 842
>ISPfe2
Length = 1884
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 214 cggcaaaggccgcg 227
||||||||||||||
Sbjct: 322 cggcaaaggccgcg 309
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 7 cctgcgcgccatgg 20
||||||||||||||
Sbjct: 605 cctgcgcgccatgg 618
>ISNph15
Length = 1476
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 28 gcggcacatcgaca 41
||||||||||||||
Sbjct: 278 gcggcacatcgaca 291
>ISAnsp14
Length = 1629
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 103 cgaggttgccgagc 116
||||||||||||||
Sbjct: 69 cgaggttgccgagc 82
>ISRel9
Length = 1553
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 49 tcagaccatgggtt 62
||||||||||||||
Sbjct: 1475 tcagaccatgggtt 1488
>ISPlc1
Length = 1050
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 77 gccgtcggcggtga 90
||||||||||||||
Sbjct: 651 gccgtcggcggtga 638
>ISHwa4
Length = 1285
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 189 tcaaccagaccgcg 202
||||||||||||||
Sbjct: 1195 tcaaccagaccgcg 1208
>ISBj2_B
Length = 1509
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 217 caaaggccgcgccg 230
||||||||||||||
Sbjct: 1345 caaaggccgcgccg 1358
>ISCARN37
Length = 1308
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 77 gccgtcggcggtga 90
||||||||||||||
Sbjct: 917 gccgtcggcggtga 904
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 206 cttggtgccggcaa 219
||||||||||||||
Sbjct: 1133 cttggtgccggcaa 1120
>ISPfr2
Length = 1731
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 1 cgaacacctgcgcg 14
||||||||||||||
Sbjct: 1339 cgaacacctgcgcg 1352
>ISTro1
Length = 1735
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 159 ccgtcgccgcgcag 172
||||||||||||||
Sbjct: 805 ccgtcgccgcgcag 792
>ISAde5
Length = 1270
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 103 cgaggttgccgagc 116
||||||||||||||
Sbjct: 67 cgaggttgccgagc 80
>ISMsi4
Length = 1332
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 157 gcccgtcgccgcgc 170
||||||||||||||
Sbjct: 352 gcccgtcgccgcgc 365
>ISMsi2
Length = 1332
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 157 gcccgtcgccgcgc 170
||||||||||||||
Sbjct: 351 gcccgtcgccgcgc 364
>ISMdi7
Length = 2568
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 34 catcgacaatcagc 47
||||||||||||||
Sbjct: 2129 catcgacaatcagc 2116
>ISStma11
Length = 4621
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 162 tcgccgcgcagcac 175
||||||||||||||
Sbjct: 2624 tcgccgcgcagcac 2637
>ISMae8
Length = 1418
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 147 gaatgaaacagccc 160
||||||||||||||
Sbjct: 16 gaatgaaacagccc 3
>ISThsp12
Length = 2004
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 7 cctgcgcgccatgg 20
||||||||||||||
Sbjct: 506 cctgcgcgccatgg 519
>ISBj5_B
Length = 1524
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 217 caaaggccgcgccg 230
||||||||||||||
Sbjct: 1360 caaaggccgcgccg 1373
>ISAli20
Length = 3828
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 221 ggccgcgccgcggc 234
||||||||||||||
Sbjct: 3697 ggccgcgccgcggc 3710
>ISSba14
Length = 3815
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 238 ccagattgatgccg 251
||||||||||||||
Sbjct: 2661 ccagattgatgccg 2648
>ISHar5
Length = 1253
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 33 acatcgacaatcag 46
||||||||||||||
Sbjct: 346 acatcgacaatcag 359
>ISSpo9
Length = 1049
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 77 gccgtcggcggtga 90
||||||||||||||
Sbjct: 650 gccgtcggcggtga 637
>ISRae1
Length = 1111
Score = 28.2 bits (14), Expect = 5.0
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 75 atgccgtcggcggtgagc 92
||||||||||||| ||||
Sbjct: 410 atgccgtcggcggcgagc 393
>ISMaq2
Length = 1319
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 68 ctcgcgcatgccgt 81
||||||||||||||
Sbjct: 419 ctcgcgcatgccgt 432
>ISBvi4
Length = 1268
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 25 cacgcggcacatcg 38
||||||||||||||
Sbjct: 422 cacgcggcacatcg 409
>ISCod1
Length = 1438
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 206 cttggtgccggcaa 219
||||||||||||||
Sbjct: 963 cttggtgccggcaa 950
>ISPpa4
Length = 1053
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 77 gccgtcggcggtga 90
||||||||||||||
Sbjct: 654 gccgtcggcggtga 641
>ISXc4
Length = 6938
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 72 cgcatgccgtcggc 85
||||||||||||||
Sbjct: 3898 cgcatgccgtcggc 3885
>ISPps1
Length = 1863
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 167 gcgcagcaccatgc 180
||||||||||||||
Sbjct: 565 gcgcagcaccatgc 552
>ISAni1
Length = 1075
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 62 ttgcagctcgcgca 75
||||||||||||||
Sbjct: 149 ttgcagctcgcgca 162
>IS999
Length = 1347
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 222 gccgcgccgcggct 235
||||||||||||||
Sbjct: 744 gccgcgccgcggct 731
>IS1096
Length = 2259
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 1 cgaacacctgcgcg 14
||||||||||||||
Sbjct: 1323 cgaacacctgcgcg 1336
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_247_length_254_cov_0.909605_ID_5664
(254 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISHez3 | IS200/IS605 | IS605 | Halorubrum ezzemoulense | 32 | 0.32 |
| ISCARN110 | IS91 | Metagenomic data from CARNOULES | 32 | 0.32 | |
| ISNisp6 | IS66 | Nitrobacter sp. | 32 | 0.32 | |
| ISXci1 | IS21 | Xanthomonas citri | 30 | 1.3 | |
| ISHas1 | IS200/IS605 | IS605 | Halonotius sp. | 30 | 1.3 |
| ISRm33 | IS5 | IS903 | Sinorhizobium meliloti | 30 | 1.3 |
| ISMno31 | IS3 | IS150 | Methylobacterium nodulans | 30 | 1.3 |
| ISMch3 | IS3 | IS150 | Methylobacterium chloromethanicum | 30 | 1.3 |
| ISCur1 | IS1380 | Corynebacterium urealyticum | 30 | 1.3 | |
| ISBrsp2 | IS1182 | Bradyrhizobium sp. | 30 | 1.3 | |
| ISMdi16 | IS3 | IS407 | Methylobacterium dichloromethanicum | 30 | 1.3 |
| ISAzo34 | IS256 | Azoarcus sp. | 30 | 1.3 | |
| ISRhsp4 | IS5 | IS427 | Rhodobacter sphaeroides | 30 | 1.3 |
| ISRsp12 | Tn3 | Rhizhobium sp. | 28 | 5.0 | |
| ISMex45 | IS200/IS605 | IS1341 | Methylobacterium extorquens | 28 | 5.0 |
| ISSoc10 | IS200/IS605 | Synechococcus sp | 28 | 5.0 | |
| TnAs1 | Tn3 | Aeromonas salmonicida | 28 | 5.0 | |
| ISBj11 | IS21 | Bradyrhizobium japonicum | 28 | 5.0 | |
| ISAba30 | IS200/IS605 | Acinetobacter baumannii | 28 | 5.0 | |
| ISKpn25 | ISL3 | Klebsiella pneumoniae | 28 | 5.0 | |
| ISRjo4 | IS256 | Rhodococcus jostii | 28 | 5.0 | |
| ISKpn15 | IS66 | ISBst12 | Klebsiella pneumonia | 28 | 5.0 |
| ISPa43 | Tn3 | Pseudomonas aeruginosa | 28 | 5.0 | |
| ISPfe2 | IS1634 | Paracoccus ferrooxidans | 28 | 5.0 | |
| ISStsp6 | IS5 | ISL2 | Streptomyces sp | 28 | 5.0 |
| ISMno34 | IS6 | Methylobacterium nodulans | 28 | 5.0 | |
| ISPfr2 | ISL3 | Propionibacterium freudenreichii | 28 | 5.0 | |
| ISAar31 | IS630 | Arthrobacter arilaitensis | 28 | 5.0 | |
| ISNml2 | IS1380 | Nakamurella multipartita | 28 | 5.0 | |
| ISMex22 | Tn3 | Methylobacterium extorquens | 28 | 5.0 | |
| ISAzo17 | IS21 | Azoarcus sp. | 28 | 5.0 | |
| ISXau4 | IS66 | Xanthobacter autotrophicus | 28 | 5.0 | |
| ISAzca2 | IS66 | Azorhizobium caulinodans | 28 | 5.0 | |
| ISApr6 | IS66 | Alpha proteobacterium | 28 | 5.0 | |
| ISMasp4 | IS66 | ISBst12 | Magnetococcus sp. | 28 | 5.0 |
| ISSce1 | IS1 | ISMhu11 | Sorangium cellulosum | 28 | 5.0 |
| ISRsp3 | IS21 | Rhizobium sp. | 28 | 5.0 | |
| ISHar3 | IS110 | IS1111 | Herminiimonas arsenicoxydans | 28 | 5.0 |
| ISRm21 | ISAs1 | Sinorhizobium meliloti | 28 | 5.0 | |
| ISRpa2 | IS3 | IS407 | Rhodopseudomonas palustris | 28 | 5.0 |
| ISBcen14 | IS66 | Burkholderia cenocepacia | 28 | 5.0 | |
| ISGsu5 | IS110 | Geobacter sulfurreducens | 28 | 5.0 | |
| IS1070 | IS30 | - | Leuconostoc lactis | 28 | 5.0 |
>ISHez3
Length = 1955
Score = 32.2 bits (16), Expect = 0.32
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 204 ttcgtcgagccagtcg 219
||||||||||||||||
Sbjct: 632 ttcgtcgagccagtcg 617
>ISCARN110
Length = 2294
Score = 32.2 bits (16), Expect = 0.32
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 186 cagggccatcggctgc 201
||||||||||||||||
Sbjct: 1065 cagggccatcggctgc 1080
>ISNisp6
Length = 2489
Score = 32.2 bits (16), Expect = 0.32
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 170 tggccgaggtcatcaccagg 189
||||||| ||||||||||||
Sbjct: 2370 tggccgacgtcatcaccagg 2389
>ISXci1
Length = 2013
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 98 acagctcggcgatgc 112
|||||||||||||||
Sbjct: 1130 acagctcggcgatgc 1116
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 203 cttcgtcgagccag 216
||||||||||||||
Sbjct: 909 cttcgtcgagccag 896
>ISHas1
Length = 1955
Score = 30.2 bits (15), Expect = 1.3
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 204 ttcgtcgagccagtcggtg 222
||||| |||||||||||||
Sbjct: 632 ttcgttgagccagtcggtg 614
>ISRm33
Length = 1116
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 189 ggccatcggctgcgc 203
|||||||||||||||
Sbjct: 982 ggccatcggctgcgc 996
>ISMno31
Length = 1510
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 98 acagctcggcgatgc 112
|||||||||||||||
Sbjct: 232 acagctcggcgatgc 218
>ISMch3
Length = 1510
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 98 acagctcggcgatgc 112
|||||||||||||||
Sbjct: 232 acagctcggcgatgc 218
>ISCur1
Length = 1627
Score = 30.2 bits (15), Expect = 1.3
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 177 ggtcatcaccagggccatc 195
||||||| |||||||||||
Sbjct: 1312 ggtcatctccagggccatc 1294
>ISBrsp2
Length = 1547
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 183 caccagggccatcgg 197
|||||||||||||||
Sbjct: 1197 caccagggccatcgg 1183
>ISMdi16
Length = 1271
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 153 cggctcgccgccggg 167
|||||||||||||||
Sbjct: 348 cggctcgccgccggg 362
>ISAzo34
Length = 1439
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 150 cagcggctcgccgcc 164
|||||||||||||||
Sbjct: 1377 cagcggctcgccgcc 1391
>ISRhsp4
Length = 840
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 223 ccgatcggccggccg 237
|||||||||||||||
Sbjct: 480 ccgatcggccggccg 466
>ISRsp12
Length = 3701
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 200 gcgcttcgtcgagc 213
||||||||||||||
Sbjct: 1213 gcgcttcgtcgagc 1226
>ISMex45
Length = 1270
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 152 gcggctcgccgccg 165
||||||||||||||
Sbjct: 807 gcggctcgccgccg 820
>ISSoc10
Length = 1829
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 91 atcagatacagctc 104
||||||||||||||
Sbjct: 469 atcagatacagctc 482
>TnAs1
Length = 6694
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 144 gatcaccagcggct 157
||||||||||||||
Sbjct: 5035 gatcaccagcggct 5022
>ISBj11
Length = 2649
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 189 ggccatcggctgcg 202
||||||||||||||
Sbjct: 1220 ggccatcggctgcg 1233
>ISAba30
Length = 1770
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 71 ccagcacatcgcgg 84
||||||||||||||
Sbjct: 945 ccagcacatcgcgg 932
>ISKpn25
Length = 8154
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 139 ttgtcgatcaccag 152
||||||||||||||
Sbjct: 7407 ttgtcgatcaccag 7394
>ISRjo4
Length = 1458
Score = 28.2 bits (14), Expect = 5.0
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 72 cagcacatcgcggtcgtg 89
|||||||||||| |||||
Sbjct: 330 cagcacatcgcgttcgtg 313
>ISKpn15
Length = 1534
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 99 cagctcggcgatgc 112
||||||||||||||
Sbjct: 200 cagctcggcgatgc 187
>ISPa43
Length = 19903
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 150 cagcggctcgccgc 163
||||||||||||||
Sbjct: 15648 cagcggctcgccgc 15661
>ISPfe2
Length = 1884
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 99 cagctcggcgatgc 112
||||||||||||||
Sbjct: 1208 cagctcggcgatgc 1195
>ISStsp6
Length = 1476
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 98 acagctcggcgatg 111
||||||||||||||
Sbjct: 1005 acagctcggcgatg 992
>ISMno34
Length = 889
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 148 accagcggctcgcc 161
||||||||||||||
Sbjct: 786 accagcggctcgcc 799
>ISPfr2
Length = 1731
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 230 gccggccggcttcg 243
||||||||||||||
Sbjct: 145 gccggccggcttcg 158
>ISAar31
Length = 1155
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 153 cggctcgccgccgg 166
||||||||||||||
Sbjct: 558 cggctcgccgccgg 545
>ISNml2
Length = 1689
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 78 atcgcggtcgtgca 91
||||||||||||||
Sbjct: 1282 atcgcggtcgtgca 1295
>ISMex22
Length = 3864
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 222 gccgatcggccggc 235
||||||||||||||
Sbjct: 2683 gccgatcggccggc 2670
>ISAzo17
Length = 2095
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 203 cttcgtcgagccag 216
||||||||||||||
Sbjct: 905 cttcgtcgagccag 892
>ISXau4
Length = 2458
Score = 28.2 bits (14), Expect = 5.0
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 95 gatacagctcggcgatgc 112
|||| |||||||||||||
Sbjct: 1972 gatagagctcggcgatgc 1955
>ISAzca2
Length = 2458
Score = 28.2 bits (14), Expect = 5.0
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 95 gatacagctcggcgatgc 112
|||| |||||||||||||
Sbjct: 1972 gatagagctcggcgatgc 1955
>ISApr6
Length = 2479
Score = 28.2 bits (14), Expect = 5.0
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 218 cggtgccgatcggccggc 235
||||||||||| ||||||
Sbjct: 1758 cggtgccgatccgccggc 1775
>ISMasp4
Length = 1969
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 182 tcaccagggccatc 195
||||||||||||||
Sbjct: 627 tcaccagggccatc 640
>ISSce1
Length = 4601
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 152 gcggctcgccgccg 165
||||||||||||||
Sbjct: 3609 gcggctcgccgccg 3622
>ISRsp3
Length = 2489
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 144 gatcaccagcggct 157
||||||||||||||
Sbjct: 1705 gatcaccagcggct 1692
>ISHar3
Length = 1387
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 190 gccatcggctgcgc 203
||||||||||||||
Sbjct: 968 gccatcggctgcgc 955
>ISRm21
Length = 1167
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 189 ggccatcggctgcg 202
||||||||||||||
Sbjct: 817 ggccatcggctgcg 830
>ISRpa2
Length = 1265
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 81 gcggtcgtgcatca 94
||||||||||||||
Sbjct: 1092 gcggtcgtgcatca 1079
>ISBcen14
Length = 2516
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 94 agatacagctcggc 107
||||||||||||||
Sbjct: 1857 agatacagctcggc 1844
>ISGsu5
Length = 1400
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 180 catcaccagggcca 193
||||||||||||||
Sbjct: 536 catcaccagggcca 523
>IS1070
Length = 1027
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 69 caccagcacatcgc 82
||||||||||||||
Sbjct: 613 caccagcacatcgc 600
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_248_length_253_cov_0.818182_ID_5666
(253 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISSav7 | IS481 | Streptomyces avermitilis | 34 | 0.080 | |
| ISHli5 | ISH3 | Halohasta litchfieldiae | 32 | 0.32 | |
| ISHla11 | ISH3 | Halorubrum lacusprofundi | 32 | 0.32 | |
| ISMav7 | IS1380 | Mycobacterium avium | 32 | 0.32 | |
| ISMyma7 | IS1380 | - | Mycobacterium marinum | 32 | 0.32 |
| ISAnsp7 | IS4 | IS10 | Anaeromyxobacter sp. | 32 | 0.32 |
| ISBlma9 | IS66 | Blastopirellula marina | 32 | 0.32 | |
| TnAs3 | Tn3 | Aeromonas salmonicida | 30 | 1.3 | |
| ISSaci1 | ISAzo13 | Streptomyces acidiscabies | 30 | 1.3 | |
| ISAzs35 | IS110 | IS1111 | Azospirillum sp. | 30 | 1.3 |
| ISStsp5 | IS5 | ISL2 | Streptomyces sp. | 30 | 1.3 |
| ISMno26 | IS110 | IS1111 | Methylobacterium nodulans | 30 | 1.3 |
| ISMch1 | IS3 | IS150 | Methylobacterium chloromethanicum | 30 | 1.3 |
| ISUnCu12 | IS1380 | Uncultured marine microorganism | 30 | 1.3 | |
| ISMpo3 | IS1380 | Methylobacterium populi | 30 | 1.3 | |
| ISMex32 | IS5 | IS427 | Methylobacterium extorquens | 30 | 1.3 |
| ISThsp9 | Tn3 | Thiomonas sp. | 30 | 1.3 | |
| ISAnsp2 | IS481 | Anaeromyxobacter sp. | 30 | 1.3 | |
| ISGdi9 | IS481 | Gluconacetobacter diazotrophicus | 30 | 1.3 | |
| ISHar6 | IS110 | IS1111 | Herminiimonas arsenicoxydans | 30 | 1.3 |
| ISXau1 | IS3 | IS407 | Xanthobacter autotrophicus | 30 | 1.3 |
| ISSna1 | ISNCY | ISDol1 | Streptomyces natalensis | 28 | 5.0 |
| ISRsp12 | Tn3 | Rhizhobium sp. | 28 | 5.0 | |
| TnAs1 | Tn3 | Aeromonas salmonicida | 28 | 5.0 | |
| ISBvi7 | IS3 | IS407 | Burkholderia vietnamiensis | 28 | 5.0 |
| ISKpn27 | IS481 | Klebsiella pneumoniae | 28 | 5.0 | |
| ISNml4 | IS256 | Nakamurella multipartita | 28 | 5.0 | |
| ISAzs17 | Tn3 | Azospirillum sp. | 28 | 5.0 | |
| ISAzs6 | IS701 | Azospirillum sp. | 28 | 5.0 | |
| ISAar19 | ISL3 | Arthrobacter arilaitensis | 28 | 5.0 | |
| ISStag2 | IS481 | Stappia aggregata | 28 | 5.0 | |
| ISMex4 | IS1380 | Methylobacterium extorquens | 28 | 5.0 | |
| ISThsp10 | IS21 | Thiomonas sp. | 28 | 5.0 | |
| ISKrh1 | IS481 | Kocuria rhizophila | 28 | 5.0 | |
| ISCARN1 | IS607 | Metagenomic data from CARNOULES | 28 | 5.0 | |
| ISAfe10 | IS607 | Acidithiobacillus ferrooxidans | 28 | 5.0 | |
| ISAli8 | IS110 | Azospirillum lipoferum | 28 | 5.0 | |
| ISLxc3 | IS30 | Leifsonia xyli | 28 | 5.0 | |
| ISRel3 | IS21 | Rhizobium etli | 28 | 5.0 | |
| ISRhosp7 | IS110 | Rhodococcus sp. | 28 | 5.0 | |
| ISRhosp8 | IS110 | Rhodococcus sp. | 28 | 5.0 | |
| ISVei2 | IS481 | Verminephrobacter eiseniae | 28 | 5.0 | |
| ISRpa3 | IS481 | Rhodopseudomonas palustris | 28 | 5.0 | |
| ISVei3 | IS481 | Verminephrobacter eiseniae | 28 | 5.0 | |
| ISMxa1 | IS3 | IS3 | Myxococcus xanthus | 28 | 5.0 |
| ISCc2 | IS110 | Caulobacter crescentus | 28 | 5.0 | |
| ISFsp4 | IS200/IS605 | Frankia sp. | 28 | 5.0 | |
| ISEc13 | IS4 | IS50 | Escherichia coli | 28 | 5.0 |
| ISAli15 | IS66 | Azospirillum lipoferum | 28 | 5.0 | |
| ISBlo3 | IS3 | Bifidobacterium longum | 28 | 5.0 | |
| ISFlsp1 | IS21 | Flavobacterium sp | 28 | 5.0 | |
| ISSiac1 | IS701 | Singulisphaera acidiphila | 28 | 5.0 | |
| ISRtr1 | IS256 | - | Rhizobium tropici | 28 | 5.0 |
| IS931 | IS256 | - | Burkholderia cepacia | 28 | 5.0 |
| IS1162 | IS21 | - | Pseudomonas fluorescens | 28 | 5.0 |
| IS1141 | IS3 | IS3 | Mycobacterium intracellulare | 28 | 5.0 |
>ISSav7
Length = 2992
Score = 34.2 bits (17), Expect = 0.080
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 45 cgacgacctcgccgagg 61
|||||||||||||||||
Sbjct: 1518 cgacgacctcgccgagg 1534
>ISHli5
Length = 1377
Score = 32.2 bits (16), Expect = 0.32
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 39 ggtcggcgacgacctc 54
||||||||||||||||
Sbjct: 379 ggtcggcgacgacctc 364
>ISHla11
Length = 1376
Score = 32.2 bits (16), Expect = 0.32
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 39 ggtcggcgacgacctc 54
||||||||||||||||
Sbjct: 379 ggtcggcgacgacctc 364
>ISMav7
Length = 1691
Score = 32.2 bits (16), Expect = 0.32
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 173 tggtcgaggccttcgc 188
||||||||||||||||
Sbjct: 407 tggtcgaggccttcgc 392
>ISMyma7
Length = 1694
Score = 32.2 bits (16), Expect = 0.32
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 173 tggtcgaggccttcgc 188
||||||||||||||||
Sbjct: 405 tggtcgaggccttcgc 390
>ISAnsp7
Length = 1579
Score = 32.2 bits (16), Expect = 0.32
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 72 cgaggtgctgcccgag 87
||||||||||||||||
Sbjct: 573 cgaggtgctgcccgag 588
>ISBlma9
Length = 2606
Score = 32.2 bits (16), Expect = 0.32
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 151 gtgcgggtgctggtcg 166
||||||||||||||||
Sbjct: 1801 gtgcgggtgctggtcg 1786
>TnAs3
Length = 18735
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 160 ctggtcgattttctg 174
|||||||||||||||
Sbjct: 5945 ctggtcgattttctg 5959
>ISSaci1
Length = 1747
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 50 acctcgccgaggggc 64
|||||||||||||||
Sbjct: 583 acctcgccgaggggc 597
>ISAzs35
Length = 1524
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 125 cctcgcgccgacacc 139
|||||||||||||||
Sbjct: 936 cctcgcgccgacacc 950
>ISStsp5
Length = 885
Score = 30.2 bits (15), Expect = 1.3
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 217 ggtggcgtggcggcgcagg 235
|||| ||||||||||||||
Sbjct: 280 ggtgtcgtggcggcgcagg 262
>ISMno26
Length = 1353
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 222 cgtggcggcgcaggg 236
|||||||||||||||
Sbjct: 525 cgtggcggcgcaggg 539
>ISMch1
Length = 1294
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 181 gccttcgccgcctcg 195
|||||||||||||||
Sbjct: 257 gccttcgccgcctcg 243
>ISUnCu12
Length = 1597
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 89 gccgcctgcccgaga 103
|||||||||||||||
Sbjct: 423 gccgcctgcccgaga 437
>ISMpo3
Length = 1617
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 89 gccgcctgcccgaga 103
|||||||||||||||
Sbjct: 427 gccgcctgcccgaga 441
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 153 gcgggtgctggtcga 167
|||||||||||||||
Sbjct: 521 gcgggtgctggtcga 535
>ISMex32
Length = 861
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 189 cgcctcgccctggca 203
|||||||||||||||
Sbjct: 629 cgcctcgccctggca 615
>ISThsp9
Length = 6215
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 200 ggcaccgaccggccg 214
|||||||||||||||
Sbjct: 2248 ggcaccgaccggccg 2262
>ISAnsp2
Length = 1298
Score = 30.2 bits (15), Expect = 1.3
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 177 cgaggccttcgccgcctcg 195
|||| ||||||||||||||
Sbjct: 366 cgagtccttcgccgcctcg 384
>ISGdi9
Length = 1044
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 89 gccgcctgcccgaga 103
|||||||||||||||
Sbjct: 391 gccgcctgcccgaga 405
>ISHar6
Length = 1359
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 219 tggcgtggcggcgca 233
|||||||||||||||
Sbjct: 994 tggcgtggcggcgca 980
>ISXau1
Length = 1272
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 36 tctggtcggcgacga 50
|||||||||||||||
Sbjct: 709 tctggtcggcgacga 695
>ISSna1
Length = 1560
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 39 ggtcggcgacgacc 52
||||||||||||||
Sbjct: 1189 ggtcggcgacgacc 1176
>ISRsp12
Length = 3701
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 6 gcaccagggtgtcg 19
||||||||||||||
Sbjct: 2449 gcaccagggtgtcg 2436
>TnAs1
Length = 6694
Score = 28.2 bits (14), Expect = 5.0
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 169 tttctggtcgaggccttc 186
|||| |||||||||||||
Sbjct: 5059 tttccggtcgaggccttc 5042
>ISBvi7
Length = 1177
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 37 ctggtcggcgacga 50
||||||||||||||
Sbjct: 677 ctggtcggcgacga 664
>ISKpn27
Length = 1080
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 222 cgtggcggcgcagg 235
||||||||||||||
Sbjct: 432 cgtggcggcgcagg 419
>ISNml4
Length = 1462
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 227 cggcgcagggccgg 240
||||||||||||||
Sbjct: 1134 cggcgcagggccgg 1121
>ISAzs17
Length = 7252
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 66 gctggtcgaggtgc 79
||||||||||||||
Sbjct: 1695 gctggtcgaggtgc 1682
>ISAzs6
Length = 1385
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 154 cgggtgctggtcga 167
||||||||||||||
Sbjct: 501 cgggtgctggtcga 514
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 182 ccttcgccgcctcg 195
||||||||||||||
Sbjct: 1062 ccttcgccgcctcg 1049
>ISAar19
Length = 1449
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 185 tcgccgcctcgccc 198
||||||||||||||
Sbjct: 318 tcgccgcctcgccc 331
>ISStag2
Length = 1035
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 224 tggcggcgcagggc 237
||||||||||||||
Sbjct: 337 tggcggcgcagggc 324
>ISMex4
Length = 1615
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 154 cgggtgctggtcga 167
||||||||||||||
Sbjct: 522 cgggtgctggtcga 535
>ISThsp10
Length = 2501
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 1 ctggcgcaccaggg 14
||||||||||||||
Sbjct: 1900 ctggcgcaccaggg 1887
>ISKrh1
Length = 2854
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 219 tggcgtggcggcgc 232
||||||||||||||
Sbjct: 1629 tggcgtggcggcgc 1616
>ISCARN1
Length = 2232
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 168 ttttctggtcgagg 181
||||||||||||||
Sbjct: 1837 ttttctggtcgagg 1850
>ISAfe10
Length = 2232
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 168 ttttctggtcgagg 181
||||||||||||||
Sbjct: 1837 ttttctggtcgagg 1850
>ISAli8
Length = 1151
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 94 ctgcccgagatcgg 107
||||||||||||||
Sbjct: 824 ctgcccgagatcgg 837
>ISLxc3
Length = 1511
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 190 gcctcgccctggca 203
||||||||||||||
Sbjct: 1285 gcctcgccctggca 1298
>ISRel3
Length = 2308
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 177 cgaggccttcgccg 190
||||||||||||||
Sbjct: 972 cgaggccttcgccg 985
>ISRhosp7
Length = 1455
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 45 cgacgacctcgccg 58
||||||||||||||
Sbjct: 658 cgacgacctcgccg 671
>ISRhosp8
Length = 1439
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 45 cgacgacctcgccg 58
||||||||||||||
Sbjct: 641 cgacgacctcgccg 654
>ISVei2
Length = 1082
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 222 cgtggcggcgcagg 235
||||||||||||||
Sbjct: 443 cgtggcggcgcagg 430
>ISRpa3
Length = 1261
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 48 cgacctcgccgagg 61
||||||||||||||
Sbjct: 871 cgacctcgccgagg 884
>ISVei3
Length = 1080
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 222 cgtggcggcgcagg 235
||||||||||||||
Sbjct: 441 cgtggcggcgcagg 428
>ISMxa1
Length = 1292
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 149 aggtgcgggtgctg 162
||||||||||||||
Sbjct: 305 aggtgcgggtgctg 318
>ISCc2
Length = 1213
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 95 tgcccgagatcggc 108
||||||||||||||
Sbjct: 868 tgcccgagatcggc 881
>ISFsp4
Length = 1784
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 98 ccgagatcggcgtc 111
||||||||||||||
Sbjct: 1044 ccgagatcggcgtc 1057
>ISEc13
Length = 1550
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 150 ggtgcgggtgctgg 163
||||||||||||||
Sbjct: 312 ggtgcgggtgctgg 299
>ISAli15
Length = 2658
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 149 aggtgcgggtgctg 162
||||||||||||||
Sbjct: 1522 aggtgcgggtgctg 1535
>ISBlo3
Length = 1480
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 39 ggtcggcgacgacc 52
||||||||||||||
Sbjct: 122 ggtcggcgacgacc 109
>ISFlsp1
Length = 2669
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 211 gccggaggtggcgt 224
||||||||||||||
Sbjct: 1020 gccggaggtggcgt 1033
>ISSiac1
Length = 1358
Score = 28.2 bits (14), Expect = 5.0
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 33 ttttctggtcggcgacga 50
||||| ||||||||||||
Sbjct: 236 ttttccggtcggcgacga 219
>ISRtr1
Length = 1364
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 36 tctggtcggcgacg 49
||||||||||||||
Sbjct: 982 tctggtcggcgacg 969
>IS931
Length = 1477
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 74 aggtgctgcccgag 87
||||||||||||||
Sbjct: 568 aggtgctgcccgag 581
>IS1162
Length = 2634
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 172 ctggtcgaggcctt 185
||||||||||||||
Sbjct: 1698 ctggtcgaggcctt 1685
>IS1141
Length = 1588
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 218 gtggcgtggcggcg 231
||||||||||||||
Sbjct: 301 gtggcgtggcggcg 314
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_249_length_253_cov_0.806818_ID_5668
(253 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISFsp11 | IS66 | ISBst12 | Frankia sp. | 36 | 0.020 |
| TnAs1 | Tn3 | Aeromonas salmonicida | 32 | 0.32 | |
| ISPsy13 | IS3 | IS3 | Pseudomonas syringae | 32 | 0.32 |
| ISAs29 | IS21 | Aeromonas salmonicida | 30 | 1.3 | |
| ISRta5 | IS5 | IS903 | Cupriavidus taiwanensis | 30 | 1.3 |
| ISSce1 | IS1 | ISMhu11 | Sorangium cellulosum | 30 | 1.3 |
| ISXo15 | IS701 | Xanthomonas oryzae | 30 | 1.3 | |
| ISTha3 | IS91 | Thauera sp. | 28 | 5.0 | |
| ISApr14 | IS256 | alpha proteobacterium | 28 | 5.0 | |
| ISAzs29 | Tn3 | Azospirillum sp. | 28 | 5.0 | |
| ISNha8 | IS5 | Nitrobacter hamburgensis | 28 | 5.0 | |
| ISCsc1 | IS66 | Clostridium scindens | 28 | 5.0 | |
| ISAar40 | IS3 | IS3 | Arthrobacter arilaitensis | 28 | 5.0 |
| ISRop1 | IS1380 | Rhodococcus opacus | 28 | 5.0 | |
| ISCur1 | IS1380 | Corynebacterium urealyticum | 28 | 5.0 | |
| ISCARN49 | IS21 | Metagenomic data from CARNOULES | 28 | 5.0 | |
| ISAfe2 | IS256 | Acidithiobacillus ferrooxidans | 28 | 5.0 | |
| ISBmu6 | IS3 | IS150 | Burkholderia multivorans | 28 | 5.0 |
| ISBxe3 | IS481 | Burkholderia xenovorans | 28 | 5.0 | |
| ISBcen26 | IS481 | Burkholderia cenocepacia | 28 | 5.0 | |
| ISGbe1 | IS3 | IS407 | Granulibacter bethesdensis | 28 | 5.0 |
| ISNha4 | IS3 | IS407 | Nitrobacter hamburgensis | 28 | 5.0 |
| ISBcen16 | IS3 | IS150 | Burkholderia cenocepacia | 28 | 5.0 |
| ISXax1 | IS256 | Xanthomonas axonopodis | 28 | 5.0 | |
| ISRso16 | IS3 | IS407 | Ralstonia solanacearum | 28 | 5.0 |
| ISPpa5 | IS66 | Paracoccus pantotrophus | 28 | 5.0 | |
| ISXo2 | IS1595 | IS1595 | Xanthomomas oryzae | 28 | 5.0 |
| ISRso19 | IS21 | - | Ralstonia solanacearum | 28 | 5.0 |
>ISFsp11
Length = 1836
Score = 36.2 bits (18), Expect = 0.020
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 147 cgttgccctcggaggcga 164
||||||||||||||||||
Sbjct: 820 cgttgccctcggaggcga 803
>TnAs1
Length = 6694
Score = 32.2 bits (16), Expect = 0.32
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 238 cagcagcgcttcgagc 253
||||||||||||||||
Sbjct: 3277 cagcagcgcttcgagc 3262
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 162 cgatgacctgcgtc 175
||||||||||||||
Sbjct: 3340 cgatgacctgcgtc 3353
>ISPsy13
Length = 1232
Score = 32.2 bits (16), Expect = 0.32
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 236 gccagcagcgcttcga 251
||||||||||||||||
Sbjct: 541 gccagcagcgcttcga 526
>ISAs29
Length = 2613
Score = 30.2 bits (15), Expect = 1.3
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 35 gccttgggcttgtccttgg 53
||||||| |||||||||||
Sbjct: 997 gccttggccttgtccttgg 979
>ISRta5
Length = 1130
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 135 ccttccactcgccgt 149
|||||||||||||||
Sbjct: 543 ccttccactcgccgt 529
>ISSce1
Length = 4601
Score = 30.2 bits (15), Expect = 1.3
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 73 ggccaccggcgccgccggc 91
|||||||||||| ||||||
Sbjct: 1203 ggccaccggcgcagccggc 1185
>ISXo15
Length = 1473
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 234 ccgccagcagcgctt 248
|||||||||||||||
Sbjct: 314 ccgccagcagcgctt 300
>ISTha3
Length = 2424
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 240 gcagcgcttcgagc 253
||||||||||||||
Sbjct: 1780 gcagcgcttcgagc 1793
>ISApr14
Length = 1316
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 24 tggcaggcgcggcc 37
||||||||||||||
Sbjct: 511 tggcaggcgcggcc 524
>ISAzs29
Length = 3897
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 78 ccggcgccgccggc 91
||||||||||||||
Sbjct: 986 ccggcgccgccggc 999
>ISNha8
Length = 1288
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 78 ccggcgccgccggc 91
||||||||||||||
Sbjct: 597 ccggcgccgccggc 584
>ISCsc1
Length = 2744
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 68 ttttcggccaccgg 81
||||||||||||||
Sbjct: 802 ttttcggccaccgg 789
>ISAar40
Length = 1347
Score = 28.2 bits (14), Expect = 5.0
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 77 accggcgccgccggctgc 94
|||| |||||||||||||
Sbjct: 1190 accgccgccgccggctgc 1207
>ISRop1
Length = 4160
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 69 tttcggccaccggc 82
||||||||||||||
Sbjct: 630 tttcggccaccggc 617
>ISCur1
Length = 1627
Score = 28.2 bits (14), Expect = 5.0
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 74 gccaccggcgccgccggc 91
||||||||||||| ||||
Sbjct: 844 gccaccggcgccgtcggc 827
>ISCARN49
Length = 2630
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 239 agcagcgcttcgag 252
||||||||||||||
Sbjct: 1485 agcagcgcttcgag 1472
>ISAfe2
Length = 1124
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 234 ccgccagcagcgct 247
||||||||||||||
Sbjct: 826 ccgccagcagcgct 839
>ISBmu6
Length = 1445
Score = 28.2 bits (14), Expect = 5.0
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 236 gccagcagcgcttcgagc 253
||||||||||| ||||||
Sbjct: 539 gccagcagcgcatcgagc 522
>ISBxe3
Length = 1279
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 240 gcagcgcttcgagc 253
||||||||||||||
Sbjct: 473 gcagcgcttcgagc 486
>ISBcen26
Length = 1041
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 235 cgccagcagcgctt 248
||||||||||||||
Sbjct: 342 cgccagcagcgctt 355
>ISGbe1
Length = 1269
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 18 gcttcttggcaggc 31
||||||||||||||
Sbjct: 79 gcttcttggcaggc 66
>ISNha4
Length = 1266
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 233 tccgccagcagcgc 246
||||||||||||||
Sbjct: 1187 tccgccagcagcgc 1200
>ISBcen16
Length = 1445
Score = 28.2 bits (14), Expect = 5.0
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 236 gccagcagcgcttcgagc 253
||||||||||| ||||||
Sbjct: 539 gccagcagcgcatcgagc 522
>ISXax1
Length = 1329
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 24 tggcaggcgcggcc 37
||||||||||||||
Sbjct: 541 tggcaggcgcggcc 554
>ISRso16
Length = 1238
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 104 cgctgccagtcggc 117
||||||||||||||
Sbjct: 1089 cgctgccagtcggc 1076
>ISPpa5
Length = 2829
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 167 acctgcgtcaccgt 180
||||||||||||||
Sbjct: 206 acctgcgtcaccgt 193
>ISXo2
Length = 1070
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 215 aacagcgtgccggc 228
||||||||||||||
Sbjct: 322 aacagcgtgccggc 309
>ISRso19
Length = 1956
Score = 28.2 bits (14), Expect = 5.0
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 35 gccttgggcttgtccttg 52
|||||| |||||||||||
Sbjct: 1839 gccttgcgcttgtccttg 1822
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_250_length_253_cov_0.829545_ID_5670
(253 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISNmo2 | IS4 | IS4 | Nitrococcus mobilis | 34 | 0.080 |
| ISPsp2 | ISL3 | - | Pseudomonas sp. | 34 | 0.080 |
| IS1411 | ISL3 | - | Pseudomonas sp | 34 | 0.080 |
| ISHwa25 | IS200/IS605 | IS1341 | Haloquadratum walsbyi | 32 | 0.32 |
| ISAeme20 | IS3 | IS3 | Aeromonas media | 30 | 1.3 |
| ISNje1 | IS200/IS605 | IS1341 | Natronococcus jeotgali | 30 | 1.3 |
| ISMex30 | IS630 | Methylobacterium extorquens | 30 | 1.3 | |
| ISAau1 | IS3 | IS407 | Arthrobacter aurescens | 30 | 1.3 |
| ISMex2 | IS481 | Methylobacterium extorquens | 30 | 1.3 | |
| ISFpe1 | IS66 | Fulvimarina pelagi | 30 | 1.3 | |
| IS1547 | IS110 | - | Mycobacterium tuberculosis | 30 | 1.3 |
| IS1141 | IS3 | IS3 | Mycobacterium intracellulare | 30 | 1.3 |
| ISMno21 | IS630 | Methylobacterium nodulans | 28 | 5.0 | |
| ISMno16 | IS110 | IS1111 | Methylobacterium nodulans | 28 | 5.0 |
| ISHje2 | IS200/IS605 | IS605 | Halalkalicoccus jeotgali | 28 | 5.0 |
| ISHla18 | IS200/IS605 | IS1341 | Halorubrum lacusprofundi | 28 | 5.0 |
| ISNma14 | IS200/IS605 | IS1341 | Natrialba magadii | 28 | 5.0 |
| TnShfr1 | Tn3 | Shewanella frigidimarina | 28 | 5.0 | |
| ISHxa1 | IS200/IS605 | IS1341 | Halopiger xanaduensis | 28 | 5.0 |
| ISFsp17 | ISKra4 | ISKra4 | Frankia sp. | 28 | 5.0 |
| ISPsy30 | Tn3 | Pseudomonas syringae | 28 | 5.0 | |
| ISAzs20 | IS66 | Azospirillum sp. | 28 | 5.0 | |
| ISRel24 | IS66 | Rhizobium etli | 28 | 5.0 | |
| ISNha7 | IS5 | Nitrobacter hamburgensis | 28 | 5.0 | |
| ISArsp6 | Tn3 | Arthrobacter sp. | 28 | 5.0 | |
| ISMch4 | IS110 | IS1111 | Methylobacterium chloromethanicum | 28 | 5.0 |
| ISCc5 | IS1182 | Caulobacter crescentus | 28 | 5.0 | |
| ISMex8 | IS21 | Methylobacterium extorquens | 28 | 5.0 | |
| ISAzo21 | IS66 | Azoarcus sp. | 28 | 5.0 | |
| ISAzo19 | IS66 | Azoarcus sp. | 28 | 5.0 | |
| ISAli10 | IS66 | Azospirillum lipoferum | 28 | 5.0 | |
| ISDpr4 | IS66 | Delta proteobacterium | 28 | 5.0 | |
| ISRfsp1 | IS66 | ISBst12 | Roseiflexus sp. | 28 | 5.0 |
| ISSgr1 | IS110 | IS1111 | Streptomyces griseus | 28 | 5.0 |
| ISAusp1 | IS1595 | ISNha5 | Aurantimonas sp. | 28 | 5.0 |
| ISGka2 | IS110 | Geobacillus kaustophilus | 28 | 5.0 | |
| ISXac3 | IS3 | IS51 | Xanthomonas axonopodis | 28 | 5.0 |
| IS1413 | IS256 | - | Burkholderia cepacia | 28 | 5.0 |
>ISNmo2
Length = 1529
Score = 34.2 bits (17), Expect = 0.080
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 169 ggtcgcccggctgcagg 185
|||||||||||||||||
Sbjct: 778 ggtcgcccggctgcagg 762
>ISPsp2
Length = 1416
Score = 34.2 bits (17), Expect = 0.080
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 34 ccagcacatcgagcaag 50
|||||||||||||||||
Sbjct: 709 ccagcacatcgagcaag 693
>IS1411
Length = 1419
Score = 34.2 bits (17), Expect = 0.080
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 34 ccagcacatcgagcaag 50
|||||||||||||||||
Sbjct: 712 ccagcacatcgagcaag 696
>ISHwa25
Length = 1350
Score = 32.2 bits (16), Expect = 0.32
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 64 aacgggtgtagttgta 79
||||||||||||||||
Sbjct: 210 aacgggtgtagttgta 195
>ISAeme20
Length = 1264
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 44 gagcaaggccttggc 58
|||||||||||||||
Sbjct: 123 gagcaaggccttggc 137
>ISNje1
Length = 1597
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 52 ccttggcgtcgaaac 66
|||||||||||||||
Sbjct: 793 ccttggcgtcgaaac 807
>ISMex30
Length = 1041
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 170 gtcgcccggctgcag 184
|||||||||||||||
Sbjct: 743 gtcgcccggctgcag 729
>ISAau1
Length = 1257
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 232 ggctgtgctgcacca 246
|||||||||||||||
Sbjct: 979 ggctgtgctgcacca 965
>ISMex2
Length = 1031
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 46 gcaaggccttggcgt 60
|||||||||||||||
Sbjct: 779 gcaaggccttggcgt 765
>ISFpe1
Length = 2489
Score = 30.2 bits (15), Expect = 1.3
Identities = 21/23 (91%)
Strand = Plus / Plus
Query: 42 tcgagcaaggccttggcgtcgaa 64
||||||||||| ||| |||||||
Sbjct: 1122 tcgagcaaggcgttgccgtcgaa 1144
>IS1547
Length = 1351
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 12 agggtgttgatctcg 26
|||||||||||||||
Sbjct: 892 agggtgttgatctcg 878
>IS1141
Length = 1588
Score = 30.2 bits (15), Expect = 1.3
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 171 tcgcccggctgcaggccga 189
||||||||||| |||||||
Sbjct: 392 tcgcccggctggaggccga 410
>ISMno21
Length = 1162
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 50 ggccttggcgtcga 63
||||||||||||||
Sbjct: 324 ggccttggcgtcga 311
>ISMno16
Length = 1404
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 136 tggcccagcccggc 149
||||||||||||||
Sbjct: 289 tggcccagcccggc 276
>ISHje2
Length = 1837
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 235 tgtgctgcaccagt 248
||||||||||||||
Sbjct: 543 tgtgctgcaccagt 556
>ISHla18
Length = 1495
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 13 gggtgttgatctcg 26
||||||||||||||
Sbjct: 747 gggtgttgatctcg 760
>ISNma14
Length = 1400
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 66 cgggtgtagttgta 79
||||||||||||||
Sbjct: 202 cgggtgtagttgta 189
>TnShfr1
Length = 5131
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 168 cggtcgcccggctg 181
||||||||||||||
Sbjct: 1239 cggtcgcccggctg 1226
>ISHxa1
Length = 1457
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 135 ttggcccagcccgg 148
||||||||||||||
Sbjct: 1328 ttggcccagcccgg 1341
>ISFsp17
Length = 1693
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 50 ggccttggcgtcga 63
||||||||||||||
Sbjct: 1405 ggccttggcgtcga 1392
>ISPsy30
Length = 5167
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 127 aggcatgcttggcc 140
||||||||||||||
Sbjct: 2313 aggcatgcttggcc 2300
>ISAzs20
Length = 2811
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 136 tggcccagcccggc 149
||||||||||||||
Sbjct: 709 tggcccagcccggc 722
>ISRel24
Length = 2837
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 45 agcaaggccttggc 58
||||||||||||||
Sbjct: 556 agcaaggccttggc 569
>ISNha7
Length = 1302
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 167 ccggtcgcccggct 180
||||||||||||||
Sbjct: 783 ccggtcgcccggct 770
>ISArsp6
Length = 26712
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 55 tggcgtcgaaacgg 68
||||||||||||||
Sbjct: 16411 tggcgtcgaaacgg 16424
>ISMch4
Length = 1631
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 143 gcccggcgacgaga 156
||||||||||||||
Sbjct: 566 gcccggcgacgaga 579
>ISCc5
Length = 1577
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 34 ccagcacatcgagc 47
||||||||||||||
Sbjct: 957 ccagcacatcgagc 944
>ISMex8
Length = 2597
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 25 cgtacttgaccagc 38
||||||||||||||
Sbjct: 844 cgtacttgaccagc 831
>ISAzo21
Length = 2423
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 35 cagcacatcgagca 48
||||||||||||||
Sbjct: 1679 cagcacatcgagca 1692
>ISAzo19
Length = 2423
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 35 cagcacatcgagca 48
||||||||||||||
Sbjct: 1679 cagcacatcgagca 1692
>ISAli10
Length = 2584
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 177 ggctgcaggccgat 190
||||||||||||||
Sbjct: 1881 ggctgcaggccgat 1894
>ISDpr4
Length = 2431
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 146 cggcgacgagatat 159
||||||||||||||
Sbjct: 1017 cggcgacgagatat 1004
>ISRfsp1
Length = 1503
Score = 28.2 bits (14), Expect = 5.0
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 172 cgcccggctgcaggccga 189
|||||| |||||||||||
Sbjct: 151 cgcccgcctgcaggccga 168
>ISSgr1
Length = 1544
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 11 cagggtgttgatct 24
||||||||||||||
Sbjct: 1065 cagggtgttgatct 1052
>ISAusp1
Length = 3418
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 145 ccggcgacgagata 158
||||||||||||||
Sbjct: 2190 ccggcgacgagata 2203
>ISGka2
Length = 1561
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 32 gaccagcacatcga 45
||||||||||||||
Sbjct: 574 gaccagcacatcga 561
>ISXac3
Length = 1234
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 206 caagtgaccgatcg 219
||||||||||||||
Sbjct: 112 caagtgaccgatcg 125
>IS1413
Length = 1429
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 115 agaagcagctccag 128
||||||||||||||
Sbjct: 787 agaagcagctccag 774
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_251_length_253_cov_0.823864_ID_5672
(253 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISAli15 | IS66 | Azospirillum lipoferum | 34 | 0.080 | |
| ISCte5 | IS5 | Comamonas testosteroni | 30 | 1.3 | |
| ISMex22 | Tn3 | Methylobacterium extorquens | 30 | 1.3 | |
| ISTni1 | ISKra4 | ISKra4 | Thioalkalivibrio nitratireducens | 28 | 5.0 |
| ISShes11 | Tn3 | Shewanella sp. | 28 | 5.0 | |
| ISScl2 | ISAzo13 | Streptomyces clavuligerus | 28 | 5.0 | |
| ISThsp16 | IS1182 | Thiomonas sp. | 28 | 5.0 | |
| ISVer1 | IS1595 | ISNwi1 | Bacterium Ellin514 | 28 | 5.0 |
| ISCausp2 | IS1595 | ISNha5 | Caulobacter sp. | 28 | 5.0 |
| ISBam2 | IS3 | IS407 | Burkholderia ambifaria | 28 | 5.0 |
| IS1595 | IS1595 | IS1595 | Xanthomonas campestris | 28 | 5.0 |
| ISPlu9 | IS4 | IS50 | Photorhabdus luminescens | 28 | 5.0 |
| ISSpo1 | IS110 | IS1111 | Silicibacter pomeroyi | 28 | 5.0 |
| ISRsp1 | IS66 | - | Rhizobium sp. | 28 | 5.0 |
| IS407 | IS3 | IS407 | Burkholderia cepacia | 28 | 5.0 |
>ISAli15
Length = 2658
Score = 34.2 bits (17), Expect = 0.080
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 54 gccggcgggcgaccagc 70
|||||||||||||||||
Sbjct: 412 gccggcgggcgaccagc 396
>ISCte5
Length = 1321
Score = 30.2 bits (15), Expect = 1.3
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 177 cgcccgctgtggccgaccg 195
||||||| |||||||||||
Sbjct: 229 cgcccgccgtggccgaccg 247
>ISMex22
Length = 3864
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 81 cgagcaactgacgat 95
|||||||||||||||
Sbjct: 1134 cgagcaactgacgat 1148
>ISTni1
Length = 2377
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 58 gcgggcgaccagcc 71
||||||||||||||
Sbjct: 187 gcgggcgaccagcc 174
>ISShes11
Length = 7669
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 154 actttcaccatggc 167
||||||||||||||
Sbjct: 73 actttcaccatggc 86
>ISScl2
Length = 1819
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 59 cgggcgaccagcct 72
||||||||||||||
Sbjct: 226 cgggcgaccagcct 213
>ISThsp16
Length = 1602
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 166 gccaacgtgatcgc 179
||||||||||||||
Sbjct: 1098 gccaacgtgatcgc 1111
>ISVer1
Length = 2783
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 15 ctttgaaggcagtc 28
||||||||||||||
Sbjct: 296 ctttgaaggcagtc 309
>ISCausp2
Length = 7915
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 54 gccggcgggcgacc 67
||||||||||||||
Sbjct: 1780 gccggcgggcgacc 1767
>ISBam2
Length = 1110
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 50 ttgagccggcgggc 63
||||||||||||||
Sbjct: 235 ttgagccggcgggc 222
>IS1595
Length = 1072
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 38 tgcaccggccgttt 51
||||||||||||||
Sbjct: 829 tgcaccggccgttt 816
>ISPlu9
Length = 1492
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 163 atggccaacgtgat 176
||||||||||||||
Sbjct: 651 atggccaacgtgat 664
>ISSpo1
Length = 1363
Score = 28.2 bits (14), Expect = 5.0
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 55 ccggcgggcgaccagcct 72
|||||| |||||||||||
Sbjct: 486 ccggcgtgcgaccagcct 469
>ISRsp1
Length = 3481
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 39 gcaccggccgtttg 52
||||||||||||||
Sbjct: 1270 gcaccggccgtttg 1257
>IS407
Length = 1236
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 50 ttgagccggcgggc 63
||||||||||||||
Sbjct: 235 ttgagccggcgggc 222
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_252_length_253_cov_0.823864_ID_5674
(253 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISThsp9 | Tn3 | Thiomonas sp. | 34 | 0.080 | |
| ISXc4 | Tn3 | - | Xanthomonas campestris | 34 | 0.080 |
| ISNov1 | ISKra4 | ISAzba1 | Novosphingobium sp. | 32 | 0.32 |
| ISApr14 | IS256 | alpha proteobacterium | 32 | 0.32 | |
| ISPfr6 | ISL3 | Propionibacterium freudenreichii | 32 | 0.32 | |
| ISBj4 | IS110 | IS1111 | Bradyrhizobium japonicum | 32 | 0.32 |
| ISAzs4 | IS110 | IS1111 | Azospirillum sp. | 30 | 1.3 |
| ISSoc2 | IS607 | Synechococcus sp. | 30 | 1.3 | |
| ISCARN55 | IS256 | Metagenomic data from CARNOULES | 30 | 1.3 | |
| ISDsh3 | IS1595 | ISNha5 | Dinoroseobacter shibae | 30 | 1.3 |
| ISCc2 | IS110 | Caulobacter crescentus | 30 | 1.3 | |
| ISEc61 | IS5 | IS1031 | Escherichia coli | 28 | 5.0 |
| ISPa59 | IS30 | Pseudomonas aeruginosa | 28 | 5.0 | |
| ISHko4 | IS200/IS605 | IS1341 | Halorubrum kocurii | 28 | 5.0 |
| ISNma17 | IS200/IS605 | IS1341 | Natrialba magadii | 28 | 5.0 |
| ISCot1 | ISKra4 | ISAzba1 | Candidatus Odyssella thessalonicensis | 28 | 5.0 |
| ISNha9 | IS256 | Nitrobacter hamburgensis | 28 | 5.0 | |
| ISMno26 | IS110 | IS1111 | Methylobacterium nodulans | 28 | 5.0 |
| ISAau5 | ISNCY | Arthrobacter aurescens | 28 | 5.0 | |
| ISAar20 | ISL3 | Arthrobacter arilaitensis | 28 | 5.0 | |
| ISAar15 | ISL3 | Arthrobacter arilaitensis | 28 | 5.0 | |
| ISAar14 | ISL3 | Arthrobacter arilaitensis | 28 | 5.0 | |
| ISAar13 | ISL3 | Arthrobacter arilaitensis | 28 | 5.0 | |
| ISAde1 | IS66 | Anaeromyxobacter dehalogenans | 28 | 5.0 | |
| ISAnsp6 | IS1182 | Anaeromyxobacter sp. | 28 | 5.0 | |
| ISCARN111 | IS110 | IS1111 | Metagenomic data from CARNOULES | 28 | 5.0 |
| ISCARN31 | IS630 | Metagenomic data from CARNOULES | 28 | 5.0 | |
| ISCARN14 | IS5 | IS1031 | Metagenomic data from CARNOULES | 28 | 5.0 |
| ISAfe2 | IS256 | Acidithiobacillus ferrooxidans | 28 | 5.0 | |
| ISAli13 | IS21 | Azospirillum lipoferum | 28 | 5.0 | |
| ISAau4 | Tn3 | Arthrobacter aurescens | 28 | 5.0 | |
| ISUnCu4 | IS30 | Plasmid QKH54 | 28 | 5.0 | |
| ISPsp4 | IS30 | Pseudomonas sp. | 28 | 5.0 | |
| ISRpa7 | ISAs1 | Rhodopseudomonas palustris | 28 | 5.0 | |
| ISPa25 | IS110 | IS1111 | Pseudomonas aeruginosa | 28 | 5.0 |
| ISRhsp3 | IS481 | Rhodobacter sphaeroides | 28 | 5.0 | |
| ISMysp3 | IS3 | IS51 | Mycobacterium sp. | 28 | 5.0 |
| ISCc1 | IS5 | IS427 | Caulobacter crescentus | 28 | 5.0 |
| ISPst1 | IS30 | - | Pseudomonas stutzeri | 28 | 5.0 |
| ISPfl2 | IS30 | - | Pseudomonas fluorescens | 28 | 5.0 |
| IS1512 | IS256 | - | Mycobacterium gordonae | 28 | 5.0 |
>ISThsp9
Length = 6215
Score = 34.2 bits (17), Expect = 0.080
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 59 gctggaacagctcgccg 75
|||||||||||||||||
Sbjct: 4552 gctggaacagctcgccg 4536
>ISXc4
Length = 6938
Score = 34.2 bits (17), Expect = 0.080
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 59 gctggaacagctcgccg 75
|||||||||||||||||
Sbjct: 4557 gctggaacagctcgccg 4541
>ISNov1
Length = 2277
Score = 32.2 bits (16), Expect = 0.32
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 28 tggcaatatcggcgcggcga 47
|||||||||||| |||||||
Sbjct: 1161 tggcaatatcggggcggcga 1180
>ISApr14
Length = 1316
Score = 32.2 bits (16), Expect = 0.32
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 213 atcgcaaactcgtcgccgcc 232
||||||| ||||||||||||
Sbjct: 866 atcgcaagctcgtcgccgcc 885
>ISPfr6
Length = 1436
Score = 32.2 bits (16), Expect = 0.32
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 75 gggacgccgctggcga 90
||||||||||||||||
Sbjct: 1198 gggacgccgctggcga 1183
>ISBj4
Length = 1576
Score = 32.2 bits (16), Expect = 0.32
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 154 ccagcaccgcccaggc 169
||||||||||||||||
Sbjct: 1081 ccagcaccgcccaggc 1066
>ISAzs4
Length = 1301
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 155 cagcaccgcccaggc 169
|||||||||||||||
Sbjct: 996 cagcaccgcccaggc 982
>ISSoc2
Length = 1832
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 96 atgctggcgctgata 110
|||||||||||||||
Sbjct: 760 atgctggcgctgata 746
>ISCARN55
Length = 1364
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 78 acgccgctggcgatg 92
|||||||||||||||
Sbjct: 663 acgccgctggcgatg 649
>ISDsh3
Length = 3472
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 18 gagtggtacatggca 32
|||||||||||||||
Sbjct: 1191 gagtggtacatggca 1177
>ISCc2
Length = 1213
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 95 gatgctggcgctgat 109
|||||||||||||||
Sbjct: 716 gatgctggcgctgat 730
>ISEc61
Length = 954
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 153 tccagcaccgccca 166
||||||||||||||
Sbjct: 191 tccagcaccgccca 178
>ISPa59
Length = 1113
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 80 gccgctggcgatgc 93
||||||||||||||
Sbjct: 745 gccgctggcgatgc 758
>ISHko4
Length = 1517
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 119 tcgttcgttgagga 132
||||||||||||||
Sbjct: 38 tcgttcgttgagga 25
>ISNma17
Length = 1585
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 119 tcgttcgttgagga 132
||||||||||||||
Sbjct: 38 tcgttcgttgagga 25
>ISCot1
Length = 2802
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 110 ataaatttttcgtt 123
||||||||||||||
Sbjct: 1023 ataaatttttcgtt 1010
>ISNha9
Length = 1322
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 88 cgatgccgatgctg 101
||||||||||||||
Sbjct: 915 cgatgccgatgctg 928
>ISMno26
Length = 1353
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 158 caccgcccaggcaa 171
||||||||||||||
Sbjct: 1056 caccgcccaggcaa 1043
>ISAau5
Length = 3989
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 219 aactcgtcgccgcc 232
||||||||||||||
Sbjct: 423 aactcgtcgccgcc 436
>ISAar20
Length = 1449
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 171 aaggccaacgcctg 184
||||||||||||||
Sbjct: 572 aaggccaacgcctg 585
>ISAar15
Length = 1418
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 153 tccagcaccgccca 166
||||||||||||||
Sbjct: 1157 tccagcaccgccca 1144
>ISAar14
Length = 1416
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 153 tccagcaccgccca 166
||||||||||||||
Sbjct: 1155 tccagcaccgccca 1142
>ISAar13
Length = 1416
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 153 tccagcaccgccca 166
||||||||||||||
Sbjct: 1155 tccagcaccgccca 1142
>ISAde1
Length = 2957
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 222 tcgtcgccgcccat 235
||||||||||||||
Sbjct: 892 tcgtcgccgcccat 879
>ISAnsp6
Length = 1515
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 156 agcaccgcccaggc 169
||||||||||||||
Sbjct: 218 agcaccgcccaggc 205
>ISCARN111
Length = 1489
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 91 tgccgatgctggcg 104
||||||||||||||
Sbjct: 809 tgccgatgctggcg 796
>ISCARN31
Length = 1099
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 160 ccgcccaggcaaag 173
||||||||||||||
Sbjct: 543 ccgcccaggcaaag 556
>ISCARN14
Length = 1226
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 155 cagcaccgcccagg 168
||||||||||||||
Sbjct: 702 cagcaccgcccagg 715
>ISAfe2
Length = 1124
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 121 gttcgttgaggata 134
||||||||||||||
Sbjct: 875 gttcgttgaggata 862
>ISAli13
Length = 2756
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 71 cgccgggacgccgc 84
||||||||||||||
Sbjct: 810 cgccgggacgccgc 797
>ISAau4
Length = 3898
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 57 gtgctggaacagct 70
||||||||||||||
Sbjct: 1515 gtgctggaacagct 1528
>ISUnCu4
Length = 1113
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 80 gccgctggcgatgc 93
||||||||||||||
Sbjct: 745 gccgctggcgatgc 758
>ISPsp4
Length = 1084
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 80 gccgctggcgatgc 93
||||||||||||||
Sbjct: 730 gccgctggcgatgc 743
>ISRpa7
Length = 1196
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 171 aaggccaacgcctg 184
||||||||||||||
Sbjct: 569 aaggccaacgcctg 556
>ISPa25
Length = 1410
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 82 cgctggcgatgccg 95
||||||||||||||
Sbjct: 414 cgctggcgatgccg 401
>ISRhsp3
Length = 1104
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 94 cgatgctggcgctg 107
||||||||||||||
Sbjct: 361 cgatgctggcgctg 374
>ISMysp3
Length = 1362
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 157 gcaccgcccaggca 170
||||||||||||||
Sbjct: 489 gcaccgcccaggca 476
>ISCc1
Length = 848
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 39 gcgcggcgaaaaag 52
||||||||||||||
Sbjct: 388 gcgcggcgaaaaag 401
>ISPst1
Length = 1113
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 80 gccgctggcgatgc 93
||||||||||||||
Sbjct: 745 gccgctggcgatgc 758
>ISPfl2
Length = 1081
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 80 gccgctggcgatgc 93
||||||||||||||
Sbjct: 713 gccgctggcgatgc 726
>IS1512
Length = 1314
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 84 ctggcgatgccgat 97
||||||||||||||
Sbjct: 254 ctggcgatgccgat 241
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_253_length_253_cov_0.818182_ID_5676
(253 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISPhae1 | IS5 | IS5 | Paracoccus haeundaensis | 36 | 0.020 |
| ISThsp12 | IS1634 | Thiomonas sp. | 34 | 0.080 | |
| ISUnCu3 | IS21 | Uncultured bacterium | 34 | 0.080 | |
| ISPpu7 | IS21 | - | Pseudomonas putida | 34 | 0.080 |
| IS1491 | IS21 | - | Pseudomonas alcaligenes | 34 | 0.080 |
| ISMav9 | ISNCY | ISDol1 | Mycobacterium avium | 32 | 0.32 |
| ISThsp9 | Tn3 | Thiomonas sp. | 32 | 0.32 | |
| ISApr3 | IS1595 | ISSod11 | Alpha proteobacterium | 32 | 0.32 |
| TnAs1 | Tn3 | Aeromonas salmonicida | 30 | 1.3 | |
| ISSuac1 | IS256 | Sulfobacillus acidophilus | 30 | 1.3 | |
| ISAzo35 | IS701 | Azoarcus sp. | 30 | 1.3 | |
| ISXau4 | IS66 | Xanthobacter autotrophicus | 30 | 1.3 | |
| ISDge3 | IS1 | Deinococcus geothermalis | 30 | 1.3 | |
| ISNmu3 | IS3 | IS2 | Nitrosospira multiformis | 30 | 1.3 |
| ISAcr1 | IS1595 | ISSod11 | Acidiphilium cryptum | 30 | 1.3 |
| IS116 | IS110 | - | Streptomyces clavuligerus | 30 | 1.3 |
| ISPsy36 | IS1182 | Pseudomonas syringae | 28 | 5.0 | |
| ISPko2 | IS256 | Paracoccus kondratievae | 28 | 5.0 | |
| ISPa43 | Tn3 | Pseudomonas aeruginosa | 28 | 5.0 | |
| ISAmi1 | IS5 | ISL2 | Actinosynnema mirum | 28 | 5.0 |
| ISPaes3 | IS256 | Paracoccus aestuarii | 28 | 5.0 | |
| ISMex43 | IS200/IS605 | IS1341 | Methylobacterium extorquens | 28 | 5.0 |
| ISThsp13 | IS1380 | Thiomonas sp. | 28 | 5.0 | |
| ISCARN100 | IS1595 | ISSod11 | Metagenomic data from CARNOULES | 28 | 5.0 |
| ISAzo28 | IS110 | Azoarcus sp. | 28 | 5.0 | |
| ISCARN30 | IS5 | IS427 | Metagenomic data from CARNOULES | 28 | 5.0 |
| ISCARN24 | IS21 | Metagenomic data from CARNOULES | 28 | 5.0 | |
| ISCARN15 | IS66 | Metagenomic data from CARNOULES | 28 | 5.0 | |
| ISNwi4 | IS1595 | ISNha5 | Nitrobacter winogradskyi | 28 | 5.0 |
| ISPsy25 | IS630 | Pseudomonas syringae | 28 | 5.0 | |
| ISSba2 | ISAs1 | Shewanella baltica | 28 | 5.0 | |
| ISEc24 | IS3 | IS51 | Escherichia coli | 28 | 5.0 |
| ISMmg5 | IS1595 | ISSod11 | Magnetospirillum magnetotacticum | 28 | 5.0 |
| ISPpu19 | IS66 | Pseudomonas putida | 28 | 5.0 | |
| ISSfr2 | IS110 | IS1111 | Ensifer fredii | 28 | 5.0 |
| ISEc19 | IS481 | Escherichia coli | 28 | 5.0 | |
| ISGbe2 | IS3 | IS2 | Granulibacter bethesdensis | 28 | 5.0 |
| ISRhsp2 | IS3 | IS2 | Rhodobacter sphaeroides | 28 | 5.0 |
| ISAzvi9 | IS3 | IS3 | Azotobacter vinelandii | 28 | 5.0 |
| ISBfun4 | IS701 | Burkholderia xenovorans | 28 | 5.0 | |
| ISMmg3 | IS4 | IS10 | Magnetospirillum magnetotacticum | 28 | 5.0 |
| IS1629 | ISAs1 | - | Streptomyces sp. | 28 | 5.0 |
>ISPhae1
Length = 1485
Score = 36.2 bits (18), Expect = 0.020
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 63 tctggctggccggtcgcctgct 84
||||||||| ||||||||||||
Sbjct: 864 tctggctggtcggtcgcctgct 885
>ISThsp12
Length = 2004
Score = 34.2 bits (17), Expect = 0.080
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 82 gctgctggccctgggtg 98
|||||||||||||||||
Sbjct: 1307 gctgctggccctgggtg 1323
>ISUnCu3
Length = 2596
Score = 34.2 bits (17), Expect = 0.080
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 42 ccctggcgctgctctgg 58
|||||||||||||||||
Sbjct: 469 ccctggcgctgctctgg 485
>ISPpu7
Length = 2598
Score = 34.2 bits (17), Expect = 0.080
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 42 ccctggcgctgctctgg 58
|||||||||||||||||
Sbjct: 470 ccctggcgctgctctgg 486
>IS1491
Length = 2481
Score = 34.2 bits (17), Expect = 0.080
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 42 ccctggcgctgctctgg 58
|||||||||||||||||
Sbjct: 400 ccctggcgctgctctgg 416
>ISMav9
Length = 1572
Score = 32.2 bits (16), Expect = 0.32
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 151 ggtgatgatcgatgcc 166
||||||||||||||||
Sbjct: 791 ggtgatgatcgatgcc 806
>ISThsp9
Length = 6215
Score = 32.2 bits (16), Expect = 0.32
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 81 tgctgctggccctggg 96
||||||||||||||||
Sbjct: 5592 tgctgctggccctggg 5577
>ISApr3
Length = 1080
Score = 32.2 bits (16), Expect = 0.32
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 58 gggcgtctggctggcc 73
||||||||||||||||
Sbjct: 350 gggcgtctggctggcc 335
>TnAs1
Length = 6694
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 27 gcacccacggccttc 41
|||||||||||||||
Sbjct: 4991 gcacccacggccttc 5005
>ISSuac1
Length = 1414
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 150 tggtgatgatcgatg 164
|||||||||||||||
Sbjct: 630 tggtgatgatcgatg 644
>ISAzo35
Length = 1451
Score = 30.2 bits (15), Expect = 1.3
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 77 cgcctgctgctggccctgg 95
||||||||||| |||||||
Sbjct: 1309 cgcctgctgcttgccctgg 1327
>ISXau4
Length = 2458
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 81 tgctgctggccctgg 95
|||||||||||||||
Sbjct: 1070 tgctgctggccctgg 1084
>ISDge3
Length = 748
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 46 ggcgctgctctgggg 60
|||||||||||||||
Sbjct: 508 ggcgctgctctgggg 494
>ISNmu3
Length = 1323
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 78 gcctgctgctggccc 92
|||||||||||||||
Sbjct: 717 gcctgctgctggccc 731
>ISAcr1
Length = 1080
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 58 gggcgtctggctggc 72
|||||||||||||||
Sbjct: 350 gggcgtctggctggc 336
>IS116
Length = 1421
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 80 ctgctgctggccctg 94
|||||||||||||||
Sbjct: 411 ctgctgctggccctg 425
>ISPsy36
Length = 1658
Score = 28.2 bits (14), Expect = 5.0
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 65 tggctggccggtcgcctg 82
|||||| |||||||||||
Sbjct: 351 tggctgaccggtcgcctg 368
>ISPko2
Length = 1396
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 71 gccggtcgcctgct 84
||||||||||||||
Sbjct: 1085 gccggtcgcctgct 1072
>ISPa43
Length = 19903
Score = 28.2 bits (14), Expect = 5.0
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 77 cgcctgctgctggccctg 94
|||||||||||| |||||
Sbjct: 1422 cgcctgctgctgtccctg 1405
>ISAmi1
Length = 883
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 82 gctgctggccctgg 95
||||||||||||||
Sbjct: 330 gctgctggccctgg 343
>ISPaes3
Length = 1393
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 71 gccggtcgcctgct 84
||||||||||||||
Sbjct: 1082 gccggtcgcctgct 1069
>ISMex43
Length = 1250
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 77 cgcctgctgctggc 90
||||||||||||||
Sbjct: 238 cgcctgctgctggc 225
>ISThsp13
Length = 1583
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 77 cgcctgctgctggc 90
||||||||||||||
Sbjct: 1187 cgcctgctgctggc 1200
>ISCARN100
Length = 1111
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 59 ggcgtctggctggc 72
||||||||||||||
Sbjct: 380 ggcgtctggctggc 367
>ISAzo28
Length = 1486
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 82 gctgctggccctgg 95
||||||||||||||
Sbjct: 371 gctgctggccctgg 384
>ISCARN30
Length = 832
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 153 tgatgatcgatgcc 166
||||||||||||||
Sbjct: 342 tgatgatcgatgcc 355
>ISCARN24
Length = 2778
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 148 actggtgatgatcg 161
||||||||||||||
Sbjct: 2372 actggtgatgatcg 2359
>ISCARN15
Length = 2427
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 215 gtcgttctgggcct 228
||||||||||||||
Sbjct: 1106 gtcgttctgggcct 1093
>ISNwi4
Length = 3671
Score = 28.2 bits (14), Expect = 5.0
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 186 cgcgccagaaacgccagg 203
||||||||||||| ||||
Sbjct: 3408 cgcgccagaaacggcagg 3391
>ISPsy25
Length = 1171
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 131 aacctggcttttct 144
||||||||||||||
Sbjct: 610 aacctggcttttct 597
>ISSba2
Length = 1217
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 23 gaacgcacccacgg 36
||||||||||||||
Sbjct: 468 gaacgcacccacgg 455
>ISEc24
Length = 1230
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 33 acggccttcccctg 46
||||||||||||||
Sbjct: 665 acggccttcccctg 652
>ISMmg5
Length = 1101
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 58 gggcgtctggctgg 71
||||||||||||||
Sbjct: 371 gggcgtctggctgg 358
>ISPpu19
Length = 2377
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 59 ggcgtctggctggc 72
||||||||||||||
Sbjct: 598 ggcgtctggctggc 611
>ISSfr2
Length = 1534
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 64 ctggctggccggtc 77
||||||||||||||
Sbjct: 620 ctggctggccggtc 633
>ISEc19
Length = 1229
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 229 gctgtggctgatgc 242
||||||||||||||
Sbjct: 718 gctgtggctgatgc 731
>ISGbe2
Length = 1352
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 77 cgcctgctgctggc 90
||||||||||||||
Sbjct: 742 cgcctgctgctggc 755
>ISRhsp2
Length = 1299
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 79 cctgctgctggccc 92
||||||||||||||
Sbjct: 698 cctgctgctggccc 711
>ISAzvi9
Length = 1246
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 220 tctgggcctgctgt 233
||||||||||||||
Sbjct: 231 tctgggcctgctgt 218
>ISBfun4
Length = 1464
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 105 tgcccgactggata 118
||||||||||||||
Sbjct: 742 tgcccgactggata 729
>ISMmg3
Length = 1189
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 54 tctggggcgtctgg 67
||||||||||||||
Sbjct: 351 tctggggcgtctgg 364
>IS1629
Length = 1462
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 82 gctgctggccctgg 95
||||||||||||||
Sbjct: 298 gctgctggccctgg 311
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_254_length_253_cov_0.710227_ID_5678
(253 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISAli5 | IS3 | IS150 | Azospirillum lipoferum | 36 | 0.020 |
| ISSoc12 | IS200/IS605 | IS1341 | Synechococcus sp | 32 | 0.32 |
| ISAzs33 | IS3 | IS150 | Azospirillum sp. | 32 | 0.32 |
| ISVsp5 | IS4 | IS4Sa | Verrucomicrobium spinosum | 30 | 1.3 |
| ISXoo5 | IS5 | IS5 | Xanthomonas oryzae | 30 | 1.3 |
| ISApr2 | IS1595 | ISSod11 | Alpha proteobacterium | 30 | 1.3 |
| ISAmas1 | IS256 | IS1249 | Actinobaculum massiliae | 30 | 1.3 |
| ISPa47 | IS630 | Pseudomonas aeruginosa | 30 | 1.3 | |
| TnAs3 | Tn3 | Aeromonas salmonicida | 28 | 5.0 | |
| ISBlo17 | IS256 | IS1249 | Bifidobacterium longum | 28 | 5.0 |
| ISSoEn2 | IS256 | Primary endosymbiont of Sitophilus oryzae | 28 | 5.0 | |
| ISMno33 | IS1182 | Methylobacterium nodulans | 28 | 5.0 | |
| ISMsm11 | IS1380 | Mycobacterium smegmatis | 28 | 5.0 | |
| ISXau4 | IS66 | Xanthobacter autotrophicus | 28 | 5.0 | |
| ISAzca2 | IS66 | Azorhizobium caulinodans | 28 | 5.0 | |
| ISGdi1 | IS5 | IS1031 | Gluconacetobacter diazotrophicus | 28 | 5.0 |
| ISRta4 | IS110 | Ralstonia taiwanensis | 28 | 5.0 | |
| ISBcen9 | IS3 | IS150 | Burkholderia cenocepacia | 28 | 5.0 |
| IS219 | IS1380 | - | Mycobacterium fortuitum | 28 | 5.0 |
| IS1537 | IS607 | Mycobacterium tuberculosis | 28 | 5.0 | |
| IS1070 | IS30 | - | Leuconostoc lactis | 28 | 5.0 |
| IS1031A | IS5 | IS1031 | Acetobacter xylinum | 28 | 5.0 |
>ISAli5
Length = 1266
Score = 36.2 bits (18), Expect = 0.020
Identities = 30/34 (88%)
Strand = Plus / Plus
Query: 65 cctgatggcgcgcacgggcttgcaggcgctttac 98
|||||||| ||| | ||||||||||||| |||||
Sbjct: 599 cctgatggtgcggatgggcttgcaggcgatttac 632
>ISSoc12
Length = 1442
Score = 32.2 bits (16), Expect = 0.32
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 34 ggcattcctgccccac 49
||||||||||||||||
Sbjct: 1382 ggcattcctgccccac 1367
>ISAzs33
Length = 1265
Score = 32.2 bits (16), Expect = 0.32
Identities = 25/28 (89%)
Strand = Plus / Plus
Query: 65 cctgatggcgcgcacgggcttgcaggcg 92
|||||||||||| | ||| |||||||||
Sbjct: 599 cctgatggcgcggatggggttgcaggcg 626
>ISVsp5
Length = 1426
Score = 30.2 bits (15), Expect = 1.3
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 104 tgcgctgccggtgcgtggc 122
|||||||||||||| ||||
Sbjct: 537 tgcgctgccggtgcttggc 519
>ISXoo5
Length = 1607
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 97 acggcgatgcgctgc 111
|||||||||||||||
Sbjct: 1395 acggcgatgcgctgc 1409
>ISApr2
Length = 1029
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 59 cgcctacctgatggc 73
|||||||||||||||
Sbjct: 351 cgcctacctgatggc 365
>ISAmas1
Length = 1411
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 138 ttgcccgcgtcggtg 152
|||||||||||||||
Sbjct: 755 ttgcccgcgtcggtg 741
>ISPa47
Length = 1107
Score = 30.2 bits (15), Expect = 1.3
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 75 cgcacgggcttgcaggcgc 93
||||||||||||| |||||
Sbjct: 950 cgcacgggcttgccggcgc 968
>TnAs3
Length = 18735
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 30 gccgggcattcctg 43
||||||||||||||
Sbjct: 14147 gccgggcattcctg 14160
>ISBlo17
Length = 1352
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 65 cctgatggcgcgca 78
||||||||||||||
Sbjct: 583 cctgatggcgcgca 596
>ISSoEn2
Length = 1315
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 81 ggcttgcaggcgct 94
||||||||||||||
Sbjct: 937 ggcttgcaggcgct 950
>ISMno33
Length = 1767
Score = 28.2 bits (14), Expect = 5.0
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 229 ggctcgccgcctagttcg 246
|||||||||||| |||||
Sbjct: 1672 ggctcgccgcctggttcg 1689
>ISMsm11
Length = 1658
Score = 28.2 bits (14), Expect = 5.0
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 108 ctgccggtgcgtggcgat 125
|||| |||||||||||||
Sbjct: 804 ctgctggtgcgtggcgat 821
>ISXau4
Length = 2458
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 98 cggcgatgcgctgc 111
||||||||||||||
Sbjct: 1963 cggcgatgcgctgc 1950
>ISAzca2
Length = 2458
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 98 cggcgatgcgctgc 111
||||||||||||||
Sbjct: 1963 cggcgatgcgctgc 1950
>ISGdi1
Length = 930
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 12 cgcgaggtggtcaa 25
||||||||||||||
Sbjct: 221 cgcgaggtggtcaa 234
>ISRta4
Length = 1915
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 68 gatggcgcgcacgg 81
||||||||||||||
Sbjct: 1520 gatggcgcgcacgg 1533
>ISBcen9
Length = 1439
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 225 aatgggctcgccgc 238
||||||||||||||
Sbjct: 326 aatgggctcgccgc 339
>IS219
Length = 1654
Score = 28.2 bits (14), Expect = 5.0
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 108 ctgccggtgcgtggcgat 125
|||| |||||||||||||
Sbjct: 802 ctgctggtgcgtggcgat 819
>IS1537
Length = 1921
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 169 gggtgatcgcgtat 182
||||||||||||||
Sbjct: 107 gggtgatcgcgtat 120
>IS1070
Length = 1027
Score = 28.2 bits (14), Expect = 5.0
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 117 cgtggcgatgtgcgggtg 134
||||||||||||| ||||
Sbjct: 596 cgtggcgatgtgctggtg 613
>IS1031A
Length = 930
Score = 28.2 bits (14), Expect = 5.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 12 cgcgaggtggtcaa 25
||||||||||||||
Sbjct: 221 cgcgaggtggtcaa 234
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_255_length_252_cov_1.24_ID_5680
(252 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISStsp3 | IS1380 | Streptomyces sp. | 36 | 0.020 | |
| ISHut2 | IS200/IS605 | IS1341 | Halorhabdus utahensis | 30 | 1.3 |
| ISHaru1 | IS200/IS605 | IS1341 | Halobellus rufus | 28 | 4.9 |
| ISKpn25 | ISL3 | Klebsiella pneumoniae | 28 | 4.9 | |
| ISSdi1 | IS1182 | Streptomyces diastaticus | 28 | 4.9 | |
| ISGeob2 | IS5 | ISL2 | Geodermatophilus obscurus | 28 | 4.9 |
| ISGau1 | IS3 | IS3 | Gemmatimonas aurantiaca | 28 | 4.9 |
| ISFsp13 | ISAzo13 | Frankia sp. | 28 | 4.9 | |
| ISRop2 | ISAzo13 | Rhodococcus opacus | 28 | 4.9 | |
| ISAar27 | IS481 | Arthrobacter arilaitensis | 28 | 4.9 | |
| ISAar21 | IS4 | IS4 | Arthrobacter arilaitensis | 28 | 4.9 |
| ISStma5 | IS3 | IS3 | Stenotrophomonas maltophilia | 28 | 4.9 |
| ISEfa11 | ISL3 | Enterococcus faecium | 28 | 4.9 | |
| ISCARN62 | ISNCY | IS1202 | Metagenomic data from CARNOULES | 28 | 4.9 |
| ISRosp4 | IS66 | Roseobacter sp. | 28 | 4.9 | |
| ISXc8 | IS3 | IS3 | Xanthomonas campestris | 28 | 4.9 |
| ISSod9 | Tn3 | Shewanella oneidensis | 28 | 4.9 | |
| ISEfa5 | ISL3 | Enterococcus faecium | 28 | 4.9 | |
| ISXo7 | IS630 | - | Xanthomonas oryzae | 28 | 4.9 |
| IS895 | IS630 | - | Anabaena sp. | 28 | 4.9 |
>ISStsp3
Length = 1925
Score = 36.2 bits (18), Expect = 0.020
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 200 ggcccgggcggaaccggc 217
||||||||||||||||||
Sbjct: 697 ggcccgggcggaaccggc 714
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 197 ggtggcccgggcgg 210
||||||||||||||
Sbjct: 1254 ggtggcccgggcgg 1241
>ISHut2
Length = 1666
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 179 ccggaatttccggca 193
|||||||||||||||
Sbjct: 1539 ccggaatttccggca 1525
>ISHaru1
Length = 1488
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 166 ggttcgccgttctc 179
||||||||||||||
Sbjct: 1037 ggttcgccgttctc 1024
>ISKpn25
Length = 8154
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 58 gccagcttctgatg 71
||||||||||||||
Sbjct: 6629 gccagcttctgatg 6616
>ISSdi1
Length = 1789
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 197 ggtggcccgggcgg 210
||||||||||||||
Sbjct: 147 ggtggcccgggcgg 160
>ISGeob2
Length = 968
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 197 ggtggcccgggcgg 210
||||||||||||||
Sbjct: 659 ggtggcccgggcgg 646
>ISGau1
Length = 1276
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 150 cgacatacccgtgc 163
||||||||||||||
Sbjct: 707 cgacatacccgtgc 694
>ISFsp13
Length = 1724
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 197 ggtggcccgggcgg 210
||||||||||||||
Sbjct: 192 ggtggcccgggcgg 205
>ISRop2
Length = 2171
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 197 ggtggcccgggcgg 210
||||||||||||||
Sbjct: 189 ggtggcccgggcgg 202
>ISAar27
Length = 1669
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 66 ctgatggctttccc 79
||||||||||||||
Sbjct: 1223 ctgatggctttccc 1210
>ISAar21
Length = 1396
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 230 ggcgttccttggtc 243
||||||||||||||
Sbjct: 847 ggcgttccttggtc 834
>ISStma5
Length = 1228
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 194 ccaggtggcccggg 207
||||||||||||||
Sbjct: 145 ccaggtggcccggg 158
>ISEfa11
Length = 1514
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 39 gccttcttcatagg 52
||||||||||||||
Sbjct: 1276 gccttcttcatagg 1263
>ISCARN62
Length = 1398
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 83 ccagccggtcctgg 96
||||||||||||||
Sbjct: 858 ccagccggtcctgg 845
>ISRosp4
Length = 2709
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 102 ccgggcgatgttcc 115
||||||||||||||
Sbjct: 460 ccgggcgatgttcc 473
>ISXc8
Length = 1227
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 194 ccaggtggcccggg 207
||||||||||||||
Sbjct: 144 ccaggtggcccggg 157
>ISSod9
Length = 4412
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 156 acccgtgcggggtt 169
||||||||||||||
Sbjct: 225 acccgtgcggggtt 212
>ISEfa5
Length = 1514
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 39 gccttcttcatagg 52
||||||||||||||
Sbjct: 1276 gccttcttcatagg 1263
>ISXo7
Length = 1114
Score = 28.2 bits (14), Expect = 4.9
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 39 gccttcttcataggcttt 56
||||||||||| ||||||
Sbjct: 479 gccttcttcatcggcttt 462
>IS895
Length = 1192
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 42 ttcttcataggctt 55
||||||||||||||
Sbjct: 321 ttcttcataggctt 308
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_256_length_252_cov_1.23429_ID_5682
(252 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISSer2 | IS256 | Saccharopolyspora erythraea | 30 | 1.3 | |
| ISDpr6 | IS1380 | Delta proteobacterium | 30 | 1.3 | |
| ISAs21 | IS66 | ISBst12 | Aeromonas salmonicida | 28 | 4.9 |
| ISNpe2 | IS5 | Natrinema pellirubrum | 28 | 4.9 | |
| ISDpr9 | ISAzo13 | Delta proteobacterium | 28 | 4.9 | |
| ISKpn15 | IS66 | ISBst12 | Klebsiella pneumonia | 28 | 4.9 |
| ISFsp2 | IS5 | ISL2 | Frankia sp. | 28 | 4.9 |
| ISCur1 | IS1380 | Corynebacterium urealyticum | 28 | 4.9 | |
| ISDpr5 | IS1380 | Delta proteobacterium | 28 | 4.9 | |
| ISThsp9 | Tn3 | Thiomonas sp. | 28 | 4.9 | |
| ISPst7 | IS5 | IS5 | Pseudomonas stutzeri | 28 | 4.9 |
| ISPlu14 | IS5 | Photorhabdus luminescens | 28 | 4.9 | |
| ISBcen4 | IS110 | IS1111 | Burkholderia cenocepacia | 28 | 4.9 |
| IS21 | IS21 | - | Pseudomonas aeruginosa | 28 | 4.9 |
| IS1381A | IS5 | ISL2 | Streptococcus agalactiae | 28 | 4.9 |
>ISSer2
Length = 1473
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 152 acttcgccccttcgg 166
|||||||||||||||
Sbjct: 778 acttcgccccttcgg 764
>ISDpr6
Length = 1655
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 17 ggtcggtgatggcct 31
|||||||||||||||
Sbjct: 333 ggtcggtgatggcct 319
>ISAs21
Length = 1530
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 38 tgttggtcagcgct 51
||||||||||||||
Sbjct: 1292 tgttggtcagcgct 1279
>ISNpe2
Length = 1069
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 217 tgcgtcgaatcgat 230
||||||||||||||
Sbjct: 465 tgcgtcgaatcgat 452
>ISDpr9
Length = 1309
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 204 cgtgatcgatacct 217
||||||||||||||
Sbjct: 84 cgtgatcgatacct 97
>ISKpn15
Length = 1534
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 38 tgttggtcagcgct 51
||||||||||||||
Sbjct: 1296 tgttggtcagcgct 1283
>ISFsp2
Length = 1040
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 44 tcagcgcttcgcgc 57
||||||||||||||
Sbjct: 425 tcagcgcttcgcgc 412
>ISCur1
Length = 1627
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 171 cgcgatggtgatgt 184
||||||||||||||
Sbjct: 760 cgcgatggtgatgt 747
>ISDpr5
Length = 1653
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 18 gtcggtgatggcct 31
||||||||||||||
Sbjct: 330 gtcggtgatggcct 317
>ISThsp9
Length = 6215
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 40 ttggtcagcgcttc 53
||||||||||||||
Sbjct: 5085 ttggtcagcgcttc 5098
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 113 ggatcagatcgccc 126
||||||||||||||
Sbjct: 6086 ggatcagatcgccc 6073
>ISPst7
Length = 1192
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 114 gatcagatcgcccg 127
||||||||||||||
Sbjct: 1114 gatcagatcgcccg 1101
>ISPlu14
Length = 1582
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 120 atcgcccgtcaggg 133
||||||||||||||
Sbjct: 1490 atcgcccgtcaggg 1477
>ISBcen4
Length = 1349
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 207 gatcgatacctgcg 220
||||||||||||||
Sbjct: 869 gatcgatacctgcg 882
>IS21
Length = 2131
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 45 cagcgcttcgcgcg 58
||||||||||||||
Sbjct: 936 cagcgcttcgcgcg 949
>IS1381A
Length = 900
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 28 gccttgttggtgtt 41
||||||||||||||
Sbjct: 119 gccttgttggtgtt 132
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_257_length_252_cov_0.834286_ID_5684
(252 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISOni2 | ISKra4 | ISMich2 | Oscillatoria nigro-viridis | 38 | 0.005 |
| ISSpi1 | IS3 | IS51 | Shewanella piezotolerans | 30 | 1.3 |
| ISSse2 | IS3 | IS51 | Shewanela sediminis | 30 | 1.3 |
| ISAeme2 | ISAs1 | Aeromonas media | 28 | 4.9 | |
| ISMva3 | IS1380 | Mycobacterium vanbaalenii | 28 | 4.9 | |
| ISGsp3 | ISLre2 | Geobacillus sp. | 28 | 4.9 | |
| ISRle3 | IS66 | Rhizobium leguminosarum | 28 | 4.9 | |
| ISMac20 | IS1182 | Methanosarcina acetivorans | 28 | 4.9 | |
| ISH22 | IS200/IS605 | Halobacterium sp. | 28 | 4.9 | |
| ISRl1 | IS66 | - | Rhizobium leguminosarum | 28 | 4.9 |
>ISOni2
Length = 1179
Score = 38.2 bits (19), Expect = 0.005
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 42 ccaaaaatatgaggtaaag 60
|||||||||||||||||||
Sbjct: 65 ccaaaaatatgaggtaaag 83
>ISSpi1
Length = 1234
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 42 ccaaaaatatgaggt 56
|||||||||||||||
Sbjct: 46 ccaaaaatatgaggt 60
>ISSse2
Length = 1234
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 42 ccaaaaatatgaggt 56
|||||||||||||||
Sbjct: 46 ccaaaaatatgaggt 60
>ISAeme2
Length = 1212
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 108 ctgcagttggtcac 121
||||||||||||||
Sbjct: 450 ctgcagttggtcac 463
>ISMva3
Length = 1658
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 146 cctcgcgcgaccgc 159
||||||||||||||
Sbjct: 1360 cctcgcgcgaccgc 1347
>ISGsp3
Length = 1709
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 125 gttcccacacgtct 138
||||||||||||||
Sbjct: 836 gttcccacacgtct 823
>ISRle3
Length = 2500
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 95 cctctatgcgaagc 108
||||||||||||||
Sbjct: 652 cctctatgcgaagc 665
>ISMac20
Length = 1723
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 172 ttaggtttagagaa 185
||||||||||||||
Sbjct: 1464 ttaggtttagagaa 1477
>ISH22
Length = 1700
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 26 gagcaggcgggcga 39
||||||||||||||
Sbjct: 1344 gagcaggcgggcga 1331
>ISRl1
Length = 2495
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 95 cctctatgcgaagc 108
||||||||||||||
Sbjct: 649 cctctatgcgaagc 662
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_258_length_252_cov_0.834286_ID_5686
(252 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISMsi5 | IS3 | IS3 | Methylocella silvestris | 32 | 0.32 |
| ISUnCu3 | IS21 | Uncultured bacterium | 32 | 0.32 | |
| ISAzvi2 | IS110 | IS1111 | Azotobacter vinelandii | 32 | 0.32 |
| TnAs1 | Tn3 | Aeromonas salmonicida | 30 | 1.3 | |
| ISAzs32 | IS110 | IS1111 | Azospirillum sp. | 30 | 1.3 |
| ISGlo5 | IS5 | Geobacter lovleyi | 30 | 1.3 | |
| ISArch20 | ISAzo13 | Uncultured archaeon | 30 | 1.3 | |
| ISArsp6 | Tn3 | Arthrobacter sp. | 30 | 1.3 | |
| ISCARN43 | IS1595 | ISPna2 | Metagenomic data from CARNOULES | 30 | 1.3 |
| ISKrh3 | IS481 | Kocuria rhizophila | 30 | 1.3 | |
| ISPosp6 | IS481 | Polaromonas sp. | 30 | 1.3 | |
| ISMca1 | IS5 | Methylococcus capsulatus | 30 | 1.3 | |
| ISAav3 | IS5 | - | Acidovorax avenae | 30 | 1.3 |
| IS481v2 | IS481 | - | Bordetella pertussis | 30 | 1.3 |
| IS481v1 | IS481 | - | Bordetella pertussis | 30 | 1.3 |
| IS481 | IS481 | Bordetella pertussis | 30 | 1.3 | |
| ISMex45 | IS200/IS605 | IS1341 | Methylobacterium extorquens | 28 | 4.9 |
| ISHhu9 | IS200/IS605 | IS1341 | Halobacterium hubeiense | 28 | 4.9 |
| ISSal1 | IS66 | Shewanella algae | 28 | 4.9 | |
| ISTni1 | ISKra4 | ISKra4 | Thioalkalivibrio nitratireducens | 28 | 4.9 |
| ISBph2 | IS5 | Burkholderia phymatum | 28 | 4.9 | |
| ISSysp4 | IS5 | IS5 | Synechococcus sp. | 28 | 4.9 |
| ISButh4 | IS5 | IS5 | Burkholderia thailandensis | 28 | 4.9 |
| ISMno31 | IS3 | IS150 | Methylobacterium nodulans | 28 | 4.9 |
| ISMch6 | IS110 | Methylobacterium chloromethanicum | 28 | 4.9 | |
| ISOan2 | IS1380 | Octadecabacter antarcticus | 28 | 4.9 | |
| ISAzo1 | IS1182 | Azoarcus sp. | 28 | 4.9 | |
| ISMex38 | Tn3 | Methylobacterium extorquens | 28 | 4.9 | |
| ISCARN105 | IS3 | IS3 | Metagenomic data from CARNOULES | 28 | 4.9 |
| ISRosp4 | IS66 | Roseobacter sp. | 28 | 4.9 | |
| ISAli18 | ISL3 | Azospirillum lipoferum | 28 | 4.9 | |
| ISRssp2 | IS1595 | ISNha5 | Roseovarius sp. | 28 | 4.9 |
| ISApr4 | IS1595 | ISNwi1 | Alpha proteobacterium | 28 | 4.9 |
| ISNwi3 | IS1595 | ISNwi1 | Nitrobacter winogradskyi | 28 | 4.9 |
| ISAzo5 | IS4 | IS50 | Azoarcus sp. | 28 | 4.9 |
| ISSsp126 | IS5 | IS5 | Sphingomonas sp. | 28 | 4.9 |
| ISSme3 | IS66 | Sinorhizobium medicae | 28 | 4.9 | |
| IS1600 | IS21 | - | Ralstonia eutropha | 28 | 4.9 |
| ISSiac3 | ISAzo13 | Singulisphaera acidiphila | 28 | 4.9 | |
| IS1066 | IS630 | - | Pseudomonas sp. | 28 | 4.9 |
>ISMsi5
Length = 1228
Score = 32.2 bits (16), Expect = 0.32
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 36 gatgaagtcgagtgcc 51
||||||||||||||||
Sbjct: 1158 gatgaagtcgagtgcc 1143
>ISUnCu3
Length = 2596
Score = 32.2 bits (16), Expect = 0.32
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 108 cctgcgccagggcctg 123
||||||||||||||||
Sbjct: 1619 cctgcgccagggcctg 1634
>ISAzvi2
Length = 1396
Score = 32.2 bits (16), Expect = 0.32
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 89 aggcggccttggccgatgcc 108
||||||||||||| ||||||
Sbjct: 573 aggcggccttggcggatgcc 592
>TnAs1
Length = 6694
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 90 ggcggccttggccga 104
|||||||||||||||
Sbjct: 5650 ggcggccttggccga 5664
>ISAzs32
Length = 1601
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 90 ggcggccttggccga 104
|||||||||||||||
Sbjct: 631 ggcggccttggccga 645
>ISGlo5
Length = 1325
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 216 gccacatgcggcgtg 230
|||||||||||||||
Sbjct: 929 gccacatgcggcgtg 915
>ISArch20
Length = 1300
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 204 cctgatcgtgacgcc 218
|||||||||||||||
Sbjct: 540 cctgatcgtgacgcc 554
>ISArsp6
Length = 26712
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 24 ggccttgcaggcgat 38
|||||||||||||||
Sbjct: 17366 ggccttgcaggcgat 17380
Score = 28.2 bits (14), Expect = 4.9
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 224 cggcgtgggctgcgggcg 241
||||| ||||||||||||
Sbjct: 5342 cggcgcgggctgcgggcg 5325
>ISCARN43
Length = 1086
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 110 tgcgccagggcctga 124
|||||||||||||||
Sbjct: 375 tgcgccagggcctga 389
>ISKrh3
Length = 1113
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 158 agccgcccccgtcag 172
|||||||||||||||
Sbjct: 591 agccgcccccgtcag 577
>ISPosp6
Length = 1026
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 21 ggcggccttgcaggc 35
|||||||||||||||
Sbjct: 410 ggcggccttgcaggc 396
>ISMca1
Length = 1336
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 74 gcgcgctggtcgatg 88
|||||||||||||||
Sbjct: 177 gcgcgctggtcgatg 191
>ISAav3
Length = 1321
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 215 cgccacatgcggcgt 229
|||||||||||||||
Sbjct: 928 cgccacatgcggcgt 914
>IS481v2
Length = 1043
Score = 30.2 bits (15), Expect = 1.3
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 89 aggcggccttggccgatgc 107
|||||| ||||||||||||
Sbjct: 258 aggcgggcttggccgatgc 276
>IS481v1
Length = 1043
Score = 30.2 bits (15), Expect = 1.3
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 89 aggcggccttggccgatgc 107
|||||| ||||||||||||
Sbjct: 258 aggcgggcttggccgatgc 276
>IS481
Length = 1043
Score = 30.2 bits (15), Expect = 1.3
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 89 aggcggccttggccgatgc 107
|||||| ||||||||||||
Sbjct: 258 aggcgggcttggccgatgc 276
>ISMex45
Length = 1270
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 72 tggcgcgctggtcg 85
||||||||||||||
Sbjct: 314 tggcgcgctggtcg 327
>ISHhu9
Length = 1441
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 82 gtcgatgaggcggc 95
||||||||||||||
Sbjct: 879 gtcgatgaggcggc 866
>ISSal1
Length = 2528
Score = 28.2 bits (14), Expect = 4.9
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 97 ttggccgatgccctgcgc 114
|||| |||||||||||||
Sbjct: 1528 ttggtcgatgccctgcgc 1545
>ISTni1
Length = 2377
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 23 cggccttgcaggcg 36
||||||||||||||
Sbjct: 2171 cggccttgcaggcg 2158
>ISBph2
Length = 1335
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 210 cgtgacgccacatg 223
||||||||||||||
Sbjct: 938 cgtgacgccacatg 951
>ISSysp4
Length = 1724
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 212 tgacgccacatgcg 225
||||||||||||||
Sbjct: 650 tgacgccacatgcg 663
>ISButh4
Length = 1483
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 39 gaagtcgagtgcct 52
||||||||||||||
Sbjct: 933 gaagtcgagtgcct 946
>ISMno31
Length = 1510
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 65 cggcgcgtggcgcg 78
||||||||||||||
Sbjct: 158 cggcgcgtggcgcg 145
>ISMch6
Length = 1379
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 101 ccgatgccctgcgc 114
||||||||||||||
Sbjct: 768 ccgatgccctgcgc 781
>ISOan2
Length = 1655
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 47 gtgccttcctgatc 60
||||||||||||||
Sbjct: 604 gtgccttcctgatc 591
>ISAzo1
Length = 1545
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 12 gatcgatcgggcgg 25
||||||||||||||
Sbjct: 80 gatcgatcgggcgg 67
>ISMex38
Length = 3841
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 132 cgccgcgatcgatg 145
||||||||||||||
Sbjct: 1860 cgccgcgatcgatg 1873
>ISCARN105
Length = 1661
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 31 caggcgatgaagtc 44
||||||||||||||
Sbjct: 1410 caggcgatgaagtc 1397
>ISRosp4
Length = 2709
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 77 cgctggtcgatgag 90
||||||||||||||
Sbjct: 2192 cgctggtcgatgag 2205
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 238 ggcgaggcaatggc 251
||||||||||||||
Sbjct: 2260 ggcgaggcaatggc 2273
>ISAli18
Length = 1752
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 14 tcgatcgggcggcc 27
||||||||||||||
Sbjct: 638 tcgatcgggcggcc 625
>ISRssp2
Length = 4633
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 239 gcgaggcaatggcg 252
||||||||||||||
Sbjct: 1568 gcgaggcaatggcg 1581
>ISApr4
Length = 3691
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 192 cgacatccccaacc 205
||||||||||||||
Sbjct: 1853 cgacatccccaacc 1840
>ISNwi3
Length = 2345
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 239 gcgaggcaatggcg 252
||||||||||||||
Sbjct: 1062 gcgaggcaatggcg 1075
>ISAzo5
Length = 1478
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 84 cgatgaggcggcct 97
||||||||||||||
Sbjct: 1445 cgatgaggcggcct 1458
>ISSsp126
Length = 1293
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 74 gcgcgctggtcgat 87
||||||||||||||
Sbjct: 628 gcgcgctggtcgat 641
>ISSme3
Length = 3149
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 55 ctgatcaacacggc 68
||||||||||||||
Sbjct: 2358 ctgatcaacacggc 2371
>IS1600
Length = 2520
Score = 28.2 bits (14), Expect = 4.9
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 76 gcgctggtcgatgaggcg 93
|||| |||||||||||||
Sbjct: 1227 gcgccggtcgatgaggcg 1210
>ISSiac3
Length = 1335
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 93 ggccttggccgatg 106
||||||||||||||
Sbjct: 972 ggccttggccgatg 985
>IS1066
Length = 1137
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 90 ggcggccttggccg 103
||||||||||||||
Sbjct: 536 ggcggccttggccg 523
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_259_length_252_cov_0.68_ID_5688
(252 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISSp1 | IS1380 | - | Sphingomonas paucimobilis | 36 | 0.020 |
| IS1412 | IS1380 | - | Sphingomonas sp | 36 | 0.020 |
| ISGur2 | IS1595 | IS1595 | Geobacter uraniumreducens | 32 | 0.32 |
| ISThsp2 | IS21 | Thiomonas sp. | 30 | 1.3 | |
| ISMno25 | IS110 | IS1111 | Methylobacterium nodulans | 28 | 4.9 |
| ISNpe18 | IS5 | Natrinema pellirubrum | 28 | 4.9 | |
| ISMesp2 | IS1380 | Mesorhizobium sp. | 28 | 4.9 | |
| ISPar2 | IS3 | IS407 | Psychrobacter arcticus | 28 | 4.9 |
| ISAzo40 | IS1380 | Azoarcus sp. | 28 | 4.9 | |
| ISCARN44 | IS630 | Metagenomic data from CARNOULES | 28 | 4.9 | |
| ISPa29 | IS110 | IS1111 | Pseudomonas aeruginosa | 28 | 4.9 |
| ISGdi15 | IS110 | IS1111 | Gluconacetobacter diazotrophicus | 28 | 4.9 |
| ISSpu9 | IS4 | IS50 | Shewanella putrefaciens | 28 | 4.9 |
| ISBcen28 | IS21 | Burkholderia cenocepacia | 28 | 4.9 | |
| ISSco3 | IS5 | IS1031 | Streptomyces coelicolor | 28 | 4.9 |
| IS468A | IS5 | IS1031 | Streptomyces coelicolor | 28 | 4.9 |
| IS1133 | IS3 | IS3 | Erwinia amylovora | 28 | 4.9 |
>ISSp1
Length = 1646
Score = 36.2 bits (18), Expect = 0.020
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 2 gccggtggccatgctgct 19
||||||||||||||||||
Sbjct: 704 gccggtggccatgctgct 721
>IS1412
Length = 1656
Score = 36.2 bits (18), Expect = 0.020
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 2 gccggtggccatgctgct 19
||||||||||||||||||
Sbjct: 707 gccggtggccatgctgct 724
>ISGur2
Length = 1057
Score = 32.2 bits (16), Expect = 0.32
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 53 ccattggctgaagatg 68
||||||||||||||||
Sbjct: 29 ccattggctgaagatg 14
>ISThsp2
Length = 2644
Score = 30.2 bits (15), Expect = 1.3
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 231 ggctggatgccgcgc 245
|||||||||||||||
Sbjct: 1720 ggctggatgccgcgc 1734
>ISMno25
Length = 1518
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 105 gtgaactggttccg 118
||||||||||||||
Sbjct: 1076 gtgaactggttccg 1089
>ISNpe18
Length = 1070
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 83 gaacacgccgaaga 96
||||||||||||||
Sbjct: 812 gaacacgccgaaga 825
>ISMesp2
Length = 1618
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 205 ccattgccgccaag 218
||||||||||||||
Sbjct: 1432 ccattgccgccaag 1445
>ISPar2
Length = 1189
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 234 tggatgccgcgctt 247
||||||||||||||
Sbjct: 219 tggatgccgcgctt 232
>ISAzo40
Length = 1694
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 237 atgccgcgcttcga 250
||||||||||||||
Sbjct: 91 atgccgcgcttcga 104
>ISCARN44
Length = 1115
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 69 ggtcatgtggtcga 82
||||||||||||||
Sbjct: 1024 ggtcatgtggtcga 1011
>ISPa29
Length = 1534
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 205 ccattgccgccaag 218
||||||||||||||
Sbjct: 1076 ccattgccgccaag 1089
>ISGdi15
Length = 1602
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 181 ggatcgtcgatcgc 194
||||||||||||||
Sbjct: 812 ggatcgtcgatcgc 799
>ISSpu9
Length = 1490
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 19 tcgtctgctgatac 32
||||||||||||||
Sbjct: 308 tcgtctgctgatac 295
>ISBcen28
Length = 2311
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 80 cgagaacacgccga 93
||||||||||||||
Sbjct: 2113 cgagaacacgccga 2126
>ISSco3
Length = 1101
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 235 ggatgccgcgcttc 248
||||||||||||||
Sbjct: 657 ggatgccgcgcttc 644
>IS468A
Length = 1097
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 235 ggatgccgcgcttc 248
||||||||||||||
Sbjct: 655 ggatgccgcgcttc 642
>IS1133
Length = 1232
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 95 gatcttctgcgtga 108
||||||||||||||
Sbjct: 233 gatcttctgcgtga 246
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_260_length_251_cov_0.83908_ID_5690
(251 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISShdy2 | IS66 | Shigella dysenteriae | 38 | 0.005 | |
| ISRel6 | IS630 | Rhizobium etli | 38 | 0.005 | |
| ISAjo2 | ISNCY | IS1202 | Acinetobacter johnsonii | 32 | 0.32 |
| ISCARN74 | IS5 | IS5 | Metagenomic data from CARNOULES | 32 | 0.32 |
| ISPst9 | ISL3 | Pseudomonas stutzeri | 32 | 0.32 | |
| ISPal1 | IS5 | IS427 | Pseudomonas alcaligenes | 32 | 0.32 |
| ISBusp5 | ISKra4 | ISAzba1 | Burkholderia sp. | 30 | 1.2 |
| ISLrh2 | IS5 | IS5 | Lactobacillus rhamnosus | 30 | 1.2 |
| ISMno23 | IS91 | Methylobacterium nodulans | 30 | 1.2 | |
| ISMex26 | ISL3 | Methylobacterium extorquens | 30 | 1.2 | |
| ISAisp4 | IS110 | Acidovorax sp. | 30 | 1.2 | |
| ISCARN70 | IS4 | IS4Sa | Metagenomic data from CARNOULES | 30 | 1.2 |
| ISPla1 | IS1595 | ISPna2 | Parvibaculum lavamentivorans | 30 | 1.2 |
| ISEc12 | IS21 | Escherichia coli | 30 | 1.2 | |
| ISNe7 | IS1595 | ISPna2 | Nitrosomonas europaea | 30 | 1.2 |
| ISHma5 | ISH6 | Haloarcula marismortui | 30 | 1.2 | |
| ISL3 | ISL3 | - | Lactobacillus delbrueckii | 30 | 1.2 |
| ISRel10 | ISNCY | IS1202 | Rhizobium etli | 28 | 4.9 |
| ISMet1 | ISKra4 | ISAzba1 | Methylocystis sp. | 28 | 4.9 |
| ISBlo16 | IS256 | IS1249 | Bifidobacterium longum | 28 | 4.9 |
| ISGpr5 | IS5 | IS5 | Gamma proteobacterium | 28 | 4.9 |
| ISMpo6 | IS1182 | Methylobacterium populi | 28 | 4.9 | |
| ISMex38 | Tn3 | Methylobacterium extorquens | 28 | 4.9 | |
| ISMex2 | IS481 | Methylobacterium extorquens | 28 | 4.9 | |
| ISCARN71 | IS5 | IS5 | Metagenomic data from CARNOULES | 28 | 4.9 |
| ISAeh1 | IS66 | Alkalilimnicola ehrlichei | 28 | 4.9 | |
| ISBusp2 | IS5 | IS5 | Burkholderia sp. | 28 | 4.9 |
| ISOba3 | IS1 | ISMhu11 | Oceanicola batsensis | 28 | 4.9 |
| ISRsp3 | IS21 | Rhizobium sp. | 28 | 4.9 | |
| ISPa21 | IS110 | IS1111 | Pseudomonas aeruginosa | 28 | 4.9 |
| ISBmu2 | IS5 | IS5 | Burkholderia multivorans | 28 | 4.9 |
| ISPpa5 | IS66 | Paracoccus pantotrophus | 28 | 4.9 | |
| IS231L | IS4 | IS231 | Bacillus anthracis | 28 | 4.9 |
| ISGsu1 | IS4 | IS4Sa | Geobacter sulfurreducens | 28 | 4.9 |
| IS1416 | IS3 | IS51 | Burkholderia glumae | 28 | 4.9 |
>ISShdy2
Length = 2496
Score = 38.2 bits (19), Expect = 0.005
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 207 cagggcgtcttccagctcg 225
|||||||||||||||||||
Sbjct: 1025 cagggcgtcttccagctcg 1007
>ISRel6
Length = 1047
Score = 38.2 bits (19), Expect = 0.005
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 191 tgtcgagcagatcgagcag 209
|||||||||||||||||||
Sbjct: 301 tgtcgagcagatcgagcag 319
>ISAjo2
Length = 1482
Score = 32.2 bits (16), Expect = 0.32
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 7 atggtgaactgattca 22
||||||||||||||||
Sbjct: 511 atggtgaactgattca 526
>ISCARN74
Length = 1203
Score = 32.2 bits (16), Expect = 0.32
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 99 agagaaaaaggtctgg 114
||||||||||||||||
Sbjct: 709 agagaaaaaggtctgg 724
>ISPst9
Length = 2472
Score = 32.2 bits (16), Expect = 0.32
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 196 agcagatcgagcaggg 211
||||||||||||||||
Sbjct: 1660 agcagatcgagcaggg 1645
>ISPal1
Length = 924
Score = 32.2 bits (16), Expect = 0.32
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 54 cgcaatcacgccatcc 69
||||||||||||||||
Sbjct: 288 cgcaatcacgccatcc 273
>ISBusp5
Length = 1533
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 191 tgtcgagcagatcga 205
|||||||||||||||
Sbjct: 247 tgtcgagcagatcga 261
>ISLrh2
Length = 1575
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 56 caatcacgccatcca 70
|||||||||||||||
Sbjct: 1081 caatcacgccatcca 1067
>ISMno23
Length = 2271
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 196 agcagatcgagcagg 210
|||||||||||||||
Sbjct: 644 agcagatcgagcagg 630
>ISMex26
Length = 1676
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 193 tcgagcagatcgagc 207
|||||||||||||||
Sbjct: 1608 tcgagcagatcgagc 1594
>ISAisp4
Length = 1614
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 195 gagcagatcgagcag 209
|||||||||||||||
Sbjct: 991 gagcagatcgagcag 1005
>ISCARN70
Length = 1312
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 197 gcagatcgagcaggg 211
|||||||||||||||
Sbjct: 607 gcagatcgagcaggg 593
>ISPla1
Length = 1132
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 176 ctccgcgatcgcggc 190
|||||||||||||||
Sbjct: 308 ctccgcgatcgcggc 294
>ISEc12
Length = 2581
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 102 gaaaaaggtctggat 116
|||||||||||||||
Sbjct: 1637 gaaaaaggtctggat 1651
>ISNe7
Length = 1050
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 216 ttccagctcgttgga 230
|||||||||||||||
Sbjct: 52 ttccagctcgttgga 38
>ISHma5
Length = 1449
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 216 ttccagctcgttgga 230
|||||||||||||||
Sbjct: 303 ttccagctcgttgga 289
>ISL3
Length = 1494
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 190 ctgtcgagcagatcg 204
|||||||||||||||
Sbjct: 311 ctgtcgagcagatcg 325
>ISRel10
Length = 2528
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 72 cagatagcgttcac 85
||||||||||||||
Sbjct: 402 cagatagcgttcac 389
>ISMet1
Length = 1557
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 194 cgagcagatcgagc 207
||||||||||||||
Sbjct: 657 cgagcagatcgagc 670
>ISBlo16
Length = 1323
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 59 tcacgccatccagc 72
||||||||||||||
Sbjct: 123 tcacgccatccagc 110
>ISGpr5
Length = 1558
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 34 gcgtgcaccgcgtc 47
||||||||||||||
Sbjct: 1345 gcgtgcaccgcgtc 1332
>ISMpo6
Length = 1593
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 193 tcgagcagatcgag 206
||||||||||||||
Sbjct: 569 tcgagcagatcgag 582
>ISMex38
Length = 3841
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 128 ggtcggccatgccg 141
||||||||||||||
Sbjct: 1221 ggtcggccatgccg 1208
>ISMex2
Length = 1031
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 122 ggccggggtcggcc 135
||||||||||||||
Sbjct: 298 ggccggggtcggcc 285
>ISCARN71
Length = 1299
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 192 gtcgagcagatcga 205
||||||||||||||
Sbjct: 301 gtcgagcagatcga 314
>ISAeh1
Length = 2320
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 187 cggctgtcgagcag 200
||||||||||||||
Sbjct: 863 cggctgtcgagcag 850
>ISBusp2
Length = 1349
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 34 gcgtgcaccgcgtc 47
||||||||||||||
Sbjct: 1176 gcgtgcaccgcgtc 1163
>ISOba3
Length = 2598
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 56 caatcacgccatcc 69
||||||||||||||
Sbjct: 630 caatcacgccatcc 643
>ISRsp3
Length = 2489
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 200 gatcgagcagggcg 213
||||||||||||||
Sbjct: 1707 gatcgagcagggcg 1720
>ISPa21
Length = 1364
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 158 gccggtcaaaagcg 171
||||||||||||||
Sbjct: 387 gccggtcaaaagcg 400
>ISBmu2
Length = 1210
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 42 cgcgtcaaccagcg 55
||||||||||||||
Sbjct: 521 cgcgtcaaccagcg 508
>ISPpa5
Length = 2829
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 115 atgatcgggccggg 128
||||||||||||||
Sbjct: 480 atgatcgggccggg 493
>IS231L
Length = 5396
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 74 gatagcgttcacac 87
||||||||||||||
Sbjct: 360 gatagcgttcacac 373
>ISGsu1
Length = 1240
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 65 catccagcagatag 78
||||||||||||||
Sbjct: 478 catccagcagatag 465
>IS1416
Length = 1322
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 11 tgaactgattcatc 24
||||||||||||||
Sbjct: 1102 tgaactgattcatc 1115
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_261_length_251_cov_0.83908_ID_5692
(251 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISMno36 | IS6 | Methylobacterium nodulans | 38 | 0.005 | |
| ISMex38 | Tn3 | Methylobacterium extorquens | 36 | 0.020 | |
| ISCARN18 | IS110 | IS1111 | Metagenomic data from CARNOULES | 36 | 0.020 |
| ISMyma5 | IS481 | - | Mycobacterium marinum | 36 | 0.020 |
| ISPst12 | IS5 | Pseudomonas stutzeri | 34 | 0.080 | |
| IS1372 | IS3 | IS51 | Streptomyces lividans | 34 | 0.080 |
| ISMno35 | IS6 | Methylobacterium nodulans | 32 | 0.32 | |
| ISYps3 | Tn3 | Yersinia pseudotuberculosis | 32 | 0.32 | |
| ISStu2 | ISAzo13 | Streptomyces turgidiscabies | 30 | 1.2 | |
| ISKra3 | ISAzo13 | Ktedonobacter racemifer | 30 | 1.2 | |
| ISCARN80 | IS110 | IS1111 | Metagenomic data from CARNOULES | 30 | 1.2 |
| ISMsm1 | IS3 | IS51 | Mycobacterium smegmatis | 30 | 1.2 |
| ISSba2 | ISAs1 | Shewanella baltica | 30 | 1.2 | |
| ISRhosp2 | IS701 | Rhodococcus sp. | 30 | 1.2 | |
| ISWosp2 | IS4 | IS50 | Wolbachia | 30 | 1.2 |
| ISRso8 | IS3 | - | Ralstonia solanacearum | 30 | 1.2 |
| ISRm2011-2 | IS630 | - | Rhizobium meliloti | 30 | 1.2 |
| IS3000 | Tn3 | - | Escherichia coli | 30 | 1.2 |
| TnAs3 | Tn3 | Aeromonas salmonicida | 28 | 4.9 | |
| ISBsa1 | IS256 | Blastococcus saxobsidens | 28 | 4.9 | |
| ISCde3 | ISLre2 | Candidatus Desulforudis audaxviator | 28 | 4.9 | |
| ISAtsp2 | IS1634 | Arthrospira sp. | 28 | 4.9 | |
| ISAzs3 | IS1380 | Azospirillum sp. | 28 | 4.9 | |
| ISMno34 | IS6 | Methylobacterium nodulans | 28 | 4.9 | |
| ISMav8 | IS1380 | Mycobacterium avium | 28 | 4.9 | |
| ISCef7 | IS1380 | Corynebacterium efficiens | 28 | 4.9 | |
| ISApr11 | IS1380 | Alpha proteobacterium | 28 | 4.9 | |
| ISAnsp12 | IS66 | Anaeromyxobacter sp. | 28 | 4.9 | |
| ISMex12 | IS110 | Methylobacterium extorquens | 28 | 4.9 | |
| ISMex40 | IS5 | IS1031 | Methylobacterium extorquens | 28 | 4.9 |
| ISStma11 | ISL3 | Stenotrophomonas maltophilia | 28 | 4.9 | |
| ISCARN103 | IS1182 | Metagenomic data from CARNOULES | 28 | 4.9 | |
| ISAzo14 | IS1634 | Azoarcus sp. | 28 | 4.9 | |
| ISCARN27 | IS256 | Metagenomic data from CARNOULES | 28 | 4.9 | |
| ISKPn14 | IS1 | Klebsiella pneumoniae | 28 | 4.9 | |
| ISThsp1 | IS1182 | Thiomonas sp. | 28 | 4.9 | |
| ISVsh1 | ISAs1 | Vibrio shilonii | 28 | 4.9 | |
| ISKpn7 | IS21 | Klebsiella pneumoniae | 28 | 4.9 | |
| ISMca3 | IS3 | IS51 | Methylococcus capsulatus | 28 | 4.9 |
| ISMhu5 | IS1634 | Methanospirillum hungatei | 28 | 4.9 | |
| ISRso6 | IS21 | - | Ralstonia solanacearum | 28 | 4.9 |
| ISRso19 | IS21 | - | Ralstonia solanacearum | 28 | 4.9 |
| IS481v2 | IS481 | - | Bordetella pertussis | 28 | 4.9 |
| IS481v1 | IS481 | - | Bordetella pertussis | 28 | 4.9 |
| IS4811 | IS5 | IS1031 | Streptomyces lividans | 28 | 4.9 |
| IS481 | IS481 | Bordetella pertussis | 28 | 4.9 | |
| IS1X4 | IS1 | - | Escherichia hermannii | 28 | 4.9 |
| IS1X2 | IS1 | - | Escherichia vulneris | 28 | 4.9 |
| IS1X1 | IS1 | - | Shigella flexneri | 28 | 4.9 |
| IS1SD | IS1 | - | Shigella dysenteriae | 28 | 4.9 |
| IS1S | IS1 | - | Shigella sonnei | 28 | 4.9 |
| IS1R | IS1 | - | Escherichia coli | 28 | 4.9 |
| IS1G | IS1 | - | Escherichia coli | 28 | 4.9 |
| IS1F | IS1 | - | Escherichia coli | 28 | 4.9 |
| IS1D | IS1 | - | Escherichia coli | 28 | 4.9 |
| IS1B | IS1 | - | Escherichia coli | 28 | 4.9 |
| IS1A | IS1 | - | Escherichia coli | 28 | 4.9 |
| IS1474 | IS21 | - | Pseudomonas alcaligenes | 28 | 4.9 |
| IS117 | IS110 | - | Streptomyces coelicolor | 28 | 4.9 |
>ISMno36
Length = 888
Score = 38.2 bits (19), Expect = 0.005
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 10 accggctcgccgggcttggcgatggct 36
|||||||||||| ||||| ||||||||
Sbjct: 422 accggctcgccgtgcttgtcgatggct 396
>ISMex38
Length = 3841
Score = 36.2 bits (18), Expect = 0.020
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 45 cgccagccaggcctcggggtcg 66
|||||||||||| |||||||||
Sbjct: 2355 cgccagccaggcgtcggggtcg 2334
>ISCARN18
Length = 1561
Score = 36.2 bits (18), Expect = 0.020
Identities = 27/30 (90%)
Strand = Plus / Minus
Query: 16 tcgccgggcttggcgatggcttgcaggcgc 45
|||||| |||||| |||| |||||||||||
Sbjct: 1039 tcgccgcgcttggagatgccttgcaggcgc 1010
>ISMyma5
Length = 1838
Score = 36.2 bits (18), Expect = 0.020
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 154 accaccggcacaccgtcg 171
||||||||||||||||||
Sbjct: 483 accaccggcacaccgtcg 466
>ISPst12
Length = 1331
Score = 34.2 bits (17), Expect = 0.080
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 42 gcgcgccagccaggcctcggg 62
||||||||||| |||||||||
Sbjct: 684 gcgcgccagccgggcctcggg 664
>IS1372
Length = 1304
Score = 34.2 bits (17), Expect = 0.080
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 54 ggcctcggggtcggcttcgcc 74
|||||||||||||| ||||||
Sbjct: 405 ggcctcggggtcgggttcgcc 425
>ISMno35
Length = 894
Score = 32.2 bits (16), Expect = 0.32
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 16 tcgccgggcttggcgatggc 35
|||||||||||| |||||||
Sbjct: 422 tcgccgggcttgtcgatggc 403
>ISYps3
Length = 5723
Score = 32.2 bits (16), Expect = 0.32
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 27 ggcgatggcttgcaggcgcg 46
||||||||||| ||||||||
Sbjct: 2458 ggcgatggctttcaggcgcg 2439
>ISStu2
Length = 1760
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 7 accaccggctcgccg 21
|||||||||||||||
Sbjct: 614 accaccggctcgccg 600
>ISKra3
Length = 1287
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 6 caccaccggctcgcc 20
|||||||||||||||
Sbjct: 598 caccaccggctcgcc 584
>ISCARN80
Length = 1409
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 104 tgcccggcacgatgc 118
|||||||||||||||
Sbjct: 604 tgcccggcacgatgc 618
>ISMsm1
Length = 1345
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 132 ctcgggcgcggtgcg 146
|||||||||||||||
Sbjct: 678 ctcgggcgcggtgcg 692
>ISSba2
Length = 1217
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 139 gcggtgcggatgtcg 153
|||||||||||||||
Sbjct: 377 gcggtgcggatgtcg 363
>ISRhosp2
Length = 1361
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 43 cgcgccagccaggcc 57
|||||||||||||||
Sbjct: 1294 cgcgccagccaggcc 1308
>ISWosp2
Length = 1500
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 84 gaaaaaggtgagcag 98
|||||||||||||||
Sbjct: 762 gaaaaaggtgagcag 776
>ISRso8
Length = 1287
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 169 tcggcgcgcaggcgc 183
|||||||||||||||
Sbjct: 1000 tcggcgcgcaggcgc 1014
>ISRm2011-2
Length = 1053
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 102 gctgcccggcacgat 116
|||||||||||||||
Sbjct: 173 gctgcccggcacgat 159
>IS3000
Length = 3235
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 2 tcagcaccaccggct 16
|||||||||||||||
Sbjct: 350 tcagcaccaccggct 336
>TnAs3
Length = 18735
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 2 tcagcaccaccggc 15
||||||||||||||
Sbjct: 10673 tcagcaccaccggc 10660
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 2 tcagcaccaccggc 15
||||||||||||||
Sbjct: 13832 tcagcaccaccggc 13819
>ISBsa1
Length = 1464
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 110 gcacgatgccggtc 123
||||||||||||||
Sbjct: 313 gcacgatgccggtc 326
>ISCde3
Length = 1572
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 49 agccaggcctcggg 62
||||||||||||||
Sbjct: 1424 agccaggcctcggg 1411
>ISAtsp2
Length = 1761
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 215 ccgccacggcggaa 228
||||||||||||||
Sbjct: 1257 ccgccacggcggaa 1270
>ISAzs3
Length = 1613
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 166 ccgtcggcgcgcag 179
||||||||||||||
Sbjct: 803 ccgtcggcgcgcag 790
>ISMno34
Length = 889
Score = 28.2 bits (14), Expect = 4.9
Identities = 23/26 (88%)
Strand = Plus / Minus
Query: 10 accggctcgccgggcttggcgatggc 35
|||||||||||| |||| |||||||
Sbjct: 423 accggctcgccgtgcttatcgatggc 398
>ISMav8
Length = 2064
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 1 atcagcaccaccgg 14
||||||||||||||
Sbjct: 736 atcagcaccaccgg 749
>ISCef7
Length = 1687
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 196 tcgtcgatgttgac 209
||||||||||||||
Sbjct: 545 tcgtcgatgttgac 558
>ISApr11
Length = 1667
Score = 28.2 bits (14), Expect = 4.9
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 8 ccaccggctcgccgggct 25
||||||||||| ||||||
Sbjct: 291 ccaccggctcgacgggct 308
>ISAnsp12
Length = 2926
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 65 cggcttcgccgcgg 78
||||||||||||||
Sbjct: 334 cggcttcgccgcgg 321
>ISMex12
Length = 1418
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 107 ccggcacgatgccg 120
||||||||||||||
Sbjct: 1187 ccggcacgatgccg 1200
>ISMex40
Length = 918
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 62 ggtcggcttcgccg 75
||||||||||||||
Sbjct: 731 ggtcggcttcgccg 744
>ISStma11
Length = 4621
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 170 cggcgcgcaggcgc 183
||||||||||||||
Sbjct: 3680 cggcgcgcaggcgc 3693
>ISCARN103
Length = 1410
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 43 cgcgccagccaggc 56
||||||||||||||
Sbjct: 629 cgcgccagccaggc 642
>ISAzo14
Length = 1925
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 8 ccaccggctcgccg 21
||||||||||||||
Sbjct: 1766 ccaccggctcgccg 1753
>ISCARN27
Length = 1356
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 47 ccagccaggcctcg 60
||||||||||||||
Sbjct: 1229 ccagccaggcctcg 1216
>ISKPn14
Length = 768
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 227 aaaaactcaggccg 240
||||||||||||||
Sbjct: 308 aaaaactcaggccg 321
>ISThsp1
Length = 1539
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 38 gcaggcgcgccagc 51
||||||||||||||
Sbjct: 689 gcaggcgcgccagc 702
>ISVsh1
Length = 1226
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 28 gcgatggcttgcag 41
||||||||||||||
Sbjct: 851 gcgatggcttgcag 864
>ISKpn7
Length = 1956
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 197 cgtcgatgttgacc 210
||||||||||||||
Sbjct: 82 cgtcgatgttgacc 95
>ISMca3
Length = 1320
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 113 cgatgccggtctgc 126
||||||||||||||
Sbjct: 220 cgatgccggtctgc 233
>ISMhu5
Length = 1719
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 79 ttgtcgaaaaaggt 92
||||||||||||||
Sbjct: 1336 ttgtcgaaaaaggt 1349
>ISRso6
Length = 2064
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 6 caccaccggctcgc 19
||||||||||||||
Sbjct: 239 caccaccggctcgc 226
>ISRso19
Length = 1956
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 5 gcaccaccggctcg 18
||||||||||||||
Sbjct: 417 gcaccaccggctcg 404
>IS481v2
Length = 1043
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 5 gcaccaccggctcg 18
||||||||||||||
Sbjct: 473 gcaccaccggctcg 460
>IS481v1
Length = 1043
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 5 gcaccaccggctcg 18
||||||||||||||
Sbjct: 473 gcaccaccggctcg 460
>IS4811
Length = 5396
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 117 gccggtctgctgcc 130
||||||||||||||
Sbjct: 3322 gccggtctgctgcc 3335
>IS481
Length = 1043
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 5 gcaccaccggctcg 18
||||||||||||||
Sbjct: 473 gcaccaccggctcg 460
>IS1X4
Length = 768
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 227 aaaaactcaggccg 240
||||||||||||||
Sbjct: 308 aaaaactcaggccg 321
>IS1X2
Length = 768
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 227 aaaaactcaggccg 240
||||||||||||||
Sbjct: 308 aaaaactcaggccg 321
>IS1X1
Length = 768
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 227 aaaaactcaggccg 240
||||||||||||||
Sbjct: 308 aaaaactcaggccg 321
>IS1SD
Length = 768
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 227 aaaaactcaggccg 240
||||||||||||||
Sbjct: 308 aaaaactcaggccg 321
>IS1S
Length = 768
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 227 aaaaactcaggccg 240
||||||||||||||
Sbjct: 308 aaaaactcaggccg 321
>IS1R
Length = 768
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 227 aaaaactcaggccg 240
||||||||||||||
Sbjct: 308 aaaaactcaggccg 321
>IS1G
Length = 768
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 227 aaaaactcaggccg 240
||||||||||||||
Sbjct: 308 aaaaactcaggccg 321
>IS1F
Length = 768
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 227 aaaaactcaggccg 240
||||||||||||||
Sbjct: 308 aaaaactcaggccg 321
>IS1D
Length = 768
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 227 aaaaactcaggccg 240
||||||||||||||
Sbjct: 308 aaaaactcaggccg 321
>IS1B
Length = 768
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 227 aaaaactcaggccg 240
||||||||||||||
Sbjct: 308 aaaaactcaggccg 321
>IS1A
Length = 768
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 227 aaaaactcaggccg 240
||||||||||||||
Sbjct: 308 aaaaactcaggccg 321
>IS1474
Length = 2633
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 150 gtcgaccaccggca 163
||||||||||||||
Sbjct: 706 gtcgaccaccggca 693
>IS117
Length = 2527
Score = 28.2 bits (14), Expect = 4.9
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 208 accgtgtccgccacggcg 225
|||||| |||||||||||
Sbjct: 1480 accgtgaccgccacggcg 1463
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_262_length_251_cov_0.83908_ID_5694
(251 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISAzs2 | IS21 | Azospirillum sp. | 34 | 0.080 | |
| ISAcif1 | ISNCY | ISMae2 | Acidithiobacillus ferrivorans | 32 | 0.32 |
| TnXo19 | Tn3 | Xanthomonas oryzae | 30 | 1.2 | |
| ISMex38 | Tn3 | Methylobacterium extorquens | 30 | 1.2 | |
| ISAav4 | IS3 | IS3 | Acidovorax avenae | 30 | 1.2 |
| ISXo16 | IS1595 | IS1595 | Xanthomonas oryzae | 30 | 1.2 |
| ISBmu2 | IS5 | IS5 | Burkholderia multivorans | 30 | 1.2 |
| ISPsy2 | IS5 | IS5 | Pseudomonas syringae | 30 | 1.2 |
| ISTsu1 | IS256 | Thermaerobacter subterraneus | 28 | 4.9 | |
| TnAs3 | Tn3 | Aeromonas salmonicida | 28 | 4.9 | |
| ISNph26 | IS200/IS605 | IS1341 | Natronomonas pharaonis | 28 | 4.9 |
| ISBj5 | IS630 | Bradyrhizobium japonicum | 28 | 4.9 | |
| ISStvi1 | ISAzo13 | Streptomyces violaceusniger | 28 | 4.9 | |
| ISHvo6 | IS1595 | ISH4 | Haloferax volcanii | 28 | 4.9 |
| ISSpwi2 | IS256 | Sphingomonas wittichii | 28 | 4.9 | |
| ISAzs29 | Tn3 | Azospirillum sp. | 28 | 4.9 | |
| ISShes11 | Tn3 | Shewanella sp. | 28 | 4.9 | |
| ISPpa7 | IS66 | Paracoccus pantotrophus | 28 | 4.9 | |
| ISCde2 | ISNCY | ISDol1 | Candidatus Desulforudis audaxviator | 28 | 4.9 |
| ISMno23 | IS91 | Methylobacterium nodulans | 28 | 4.9 | |
| ISPfr2 | ISL3 | Propionibacterium freudenreichii | 28 | 4.9 | |
| ISArsp6 | Tn3 | Arthrobacter sp. | 28 | 4.9 | |
| ISAar24 | IS3 | IS3 | Arthrobacter arilaitensis | 28 | 4.9 |
| ISPa33 | IS1380 | Pseudomonas aeruginosa | 28 | 4.9 | |
| ISMdi3 | IS3 | IS407 | Methylobacterium dichloromethanicum | 28 | 4.9 |
| ISAnsp5 | IS21 | Anaeromyxobacter sp. | 28 | 4.9 | |
| ISPpu21 | IS5 | IS5 | Pseudomonas putida | 28 | 4.9 |
| ISAzo17 | IS21 | Azoarcus sp. | 28 | 4.9 | |
| ISCARN24 | IS21 | Metagenomic data from CARNOULES | 28 | 4.9 | |
| ISCARN2 | ISL3 | Metagenomic data from CARNOULES | 28 | 4.9 | |
| ISVch3 | IS21 | Vibrio cholerae | 28 | 4.9 | |
| ISUnCu3 | IS21 | Uncultured bacterium | 28 | 4.9 | |
| ISPa16 | IS5 | IS5 | Pseudomonas aeruginosa | 28 | 4.9 |
| ISPre4 | IS21 | Pseudomonas resinovorans | 28 | 4.9 | |
| ISRpa6 | ISAs1 | Rhodopseudomonas palustris | 28 | 4.9 | |
| ISNoc1 | IS3 | IS407 | Nitrosococcus oceani ATCC | 28 | 4.9 |
| ISXo14 | IS4 | IS10 | Xanthomonas oryzae | 28 | 4.9 |
| ISXac3 | IS3 | IS51 | Xanthomonas axonopodis | 28 | 4.9 |
| ISPpu18 | IS5 | IS5 | Pseudomonas putida | 28 | 4.9 |
| ISMmg1 | IS110 | IS1111 | Magnetospirillum magnetotacticum | 28 | 4.9 |
| ISXo1 | IS5 | IS5 | Xanthomonas oryzae | 28 | 4.9 |
| ISXfu2 | IS5 | IS5 | Xanthomonas fuscans | 28 | 4.9 |
| ISPpu7 | IS21 | - | Pseudomonas putida | 28 | 4.9 |
| IS2606 | IS256 | - | Mycobacterium ulcerans | 28 | 4.9 |
| IS1137 | IS3 | IS51 | Mycobacterium smegmatis | 28 | 4.9 |
| IS1051 | IS5 | IS5 | Xanthomonas campestris | 28 | 4.9 |
| IS1021 | IS5 | IS5 | Ralstonia solanacearum | 28 | 4.9 |
>ISAzs2
Length = 2609
Score = 34.2 bits (17), Expect = 0.080
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 8 ccgccgagcggatcaggccga 28
||||| |||||||||||||||
Sbjct: 1521 ccgccaagcggatcaggccga 1501
>ISAcif1
Length = 2464
Score = 32.2 bits (16), Expect = 0.32
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 103 gggcgctgccagccga 118
||||||||||||||||
Sbjct: 1642 gggcgctgccagccga 1627
>TnXo19
Length = 18767
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 74 cgccttcgagcagat 88
|||||||||||||||
Sbjct: 4591 cgccttcgagcagat 4577
>ISMex38
Length = 3841
Score = 30.2 bits (15), Expect = 1.2
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 45 ctgcaccacggcgccggcc 63
|||||||||||| ||||||
Sbjct: 3019 ctgcaccacggcaccggcc 3037
>ISAav4
Length = 1308
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 11 ccgagcggatcaggc 25
|||||||||||||||
Sbjct: 501 ccgagcggatcaggc 515
>ISXo16
Length = 1072
Score = 30.2 bits (15), Expect = 1.2
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 56 cgccggccatgaacacacc 74
||||||||||| |||||||
Sbjct: 763 cgccggccatgcacacacc 781
>ISBmu2
Length = 1210
Score = 30.2 bits (15), Expect = 1.2
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 195 ggtgttcttggccatgccc 213
|||||||||||||| ||||
Sbjct: 986 ggtgttcttggccaagccc 968
>ISPsy2
Length = 1194
Score = 30.2 bits (15), Expect = 1.2
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 195 ggtgttcttggccatgccc 213
|||||||||||||| ||||
Sbjct: 961 ggtgttcttggccaagccc 943
>ISTsu1
Length = 1315
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 111 ccagccgatggtgg 124
||||||||||||||
Sbjct: 855 ccagccgatggtgg 868
>TnAs3
Length = 18735
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 107 gctgccagccgatg 120
||||||||||||||
Sbjct: 17019 gctgccagccgatg 17032
>ISNph26
Length = 1611
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 4 tcgcccgccgagcg 17
||||||||||||||
Sbjct: 172 tcgcccgccgagcg 185
>ISBj5
Length = 1185
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 62 ccatgaacacaccg 75
||||||||||||||
Sbjct: 250 ccatgaacacaccg 263
>ISStvi1
Length = 1738
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 72 accgccttcgagca 85
||||||||||||||
Sbjct: 1366 accgccttcgagca 1379
>ISHvo6
Length = 1047
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 186 cgtgccataggtgt 199
||||||||||||||
Sbjct: 295 cgtgccataggtgt 282
>ISSpwi2
Length = 1322
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 73 ccgccttcgagcag 86
||||||||||||||
Sbjct: 131 ccgccttcgagcag 144
>ISAzs29
Length = 3897
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 5 cgcccgccgagcgg 18
||||||||||||||
Sbjct: 2932 cgcccgccgagcgg 2919
>ISShes11
Length = 7669
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 107 gctgccagccgatg 120
||||||||||||||
Sbjct: 5953 gctgccagccgatg 5966
>ISPpa7
Length = 2731
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 75 gccttcgagcagat 88
||||||||||||||
Sbjct: 1563 gccttcgagcagat 1550
>ISCde2
Length = 1704
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 225 cgcctgaccgaaag 238
||||||||||||||
Sbjct: 1142 cgcctgaccgaaag 1155
>ISMno23
Length = 2271
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 18 gatcaggccgagcc 31
||||||||||||||
Sbjct: 244 gatcaggccgagcc 257
>ISPfr2
Length = 1731
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 144 ttcgaccggccctc 157
||||||||||||||
Sbjct: 762 ttcgaccggccctc 749
>ISArsp6
Length = 26712
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 5 cgcccgccgagcgg 18
||||||||||||||
Sbjct: 10305 cgcccgccgagcgg 10318
>ISAar24
Length = 1270
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 115 ccgatggtggtgag 128
||||||||||||||
Sbjct: 1227 ccgatggtggtgag 1214
>ISPa33
Length = 1561
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 53 cggcgccggccatg 66
||||||||||||||
Sbjct: 868 cggcgccggccatg 881
>ISMdi3
Length = 1246
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 215 gcgcgaggcacgcc 228
||||||||||||||
Sbjct: 804 gcgcgaggcacgcc 791
>ISAnsp5
Length = 2192
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 30 cccatcgcgcagcc 43
||||||||||||||
Sbjct: 1278 cccatcgcgcagcc 1291
>ISPpu21
Length = 1190
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 195 ggtgttcttggcca 208
||||||||||||||
Sbjct: 958 ggtgttcttggcca 945
>ISAzo17
Length = 2095
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 238 gtggccgcctgctg 251
||||||||||||||
Sbjct: 1268 gtggccgcctgctg 1255
>ISCARN24
Length = 2778
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 50 ccacggcgccggcc 63
||||||||||||||
Sbjct: 1312 ccacggcgccggcc 1299
>ISCARN2
Length = 1303
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 178 aaacagcccgtgcc 191
||||||||||||||
Sbjct: 499 aaacagcccgtgcc 512
>ISVch3
Length = 2593
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 132 gcgatgctgcgatt 145
||||||||||||||
Sbjct: 316 gcgatgctgcgatt 303
>ISUnCu3
Length = 2596
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 34 tcgcgcagccactg 47
||||||||||||||
Sbjct: 2028 tcgcgcagccactg 2015
>ISPa16
Length = 1192
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 195 ggtgttcttggcca 208
||||||||||||||
Sbjct: 959 ggtgttcttggcca 946
>ISPre4
Length = 2575
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 31 ccatcgcgcagcca 44
||||||||||||||
Sbjct: 2011 ccatcgcgcagcca 1998
>ISRpa6
Length = 1193
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 199 ttcttggccatgcc 212
||||||||||||||
Sbjct: 830 ttcttggccatgcc 817
>ISNoc1
Length = 1204
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 112 cagccgatggtggt 125
||||||||||||||
Sbjct: 659 cagccgatggtggt 672
>ISXo14
Length = 1352
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 210 gcccggcgcgaggc 223
||||||||||||||
Sbjct: 261 gcccggcgcgaggc 274
>ISXac3
Length = 1234
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 12 cgagcggatcaggc 25
||||||||||||||
Sbjct: 1049 cgagcggatcaggc 1062
>ISPpu18
Length = 1192
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 195 ggtgttcttggcca 208
||||||||||||||
Sbjct: 959 ggtgttcttggcca 946
>ISMmg1
Length = 1359
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 35 cgcgcagccactgc 48
||||||||||||||
Sbjct: 985 cgcgcagccactgc 972
>ISXo1
Length = 1156
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 195 ggtgttcttggcca 208
||||||||||||||
Sbjct: 956 ggtgttcttggcca 943
>ISXfu2
Length = 1157
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 195 ggtgttcttggcca 208
||||||||||||||
Sbjct: 956 ggtgttcttggcca 943
>ISPpu7
Length = 2598
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 34 tcgcgcagccactg 47
||||||||||||||
Sbjct: 2029 tcgcgcagccactg 2016
>IS2606
Length = 1404
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 50 ccacggcgccggcc 63
||||||||||||||
Sbjct: 116 ccacggcgccggcc 103
>IS1137
Length = 1361
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 145 tcgaccggccctct 158
||||||||||||||
Sbjct: 358 tcgaccggccctct 371
>IS1051
Length = 1158
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 194 aggtgttcttggcc 207
||||||||||||||
Sbjct: 1035 aggtgttcttggcc 1022
>IS1021
Length = 1209
Score = 28.2 bits (14), Expect = 4.9
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 196 gtgttcttggccatgccc 213
||||||||||||| ||||
Sbjct: 986 gtgttcttggccaagccc 969
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_263_length_251_cov_0.741379_ID_5696
(251 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISBcen16 | IS3 | IS150 | Burkholderia cenocepacia | 32 | 0.32 |
| ISAeme3 | IS4 | ISH8 | Aeromonas media | 30 | 1.2 |
| ISGpo1 | IS256 | Gordonia polyisoprenivorans | 30 | 1.2 | |
| ISApr5 | IS6 | Alpha proteobacterium | 30 | 1.2 | |
| ISSce1 | IS1 | ISMhu11 | Sorangium cellulosum | 30 | 1.2 |
| IS884 | IS110 | IS1111 | Ralstonia eutropha | 30 | 1.2 |
| ISPa1328 | IS256 | Pseudomonas aeruginosa | 30 | 1.2 | |
| ISSna1 | ISNCY | ISDol1 | Streptomyces natalensis | 28 | 4.9 |
| ISTha3 | IS91 | Thauera sp. | 28 | 4.9 | |
| TnAs1 | Tn3 | Aeromonas salmonicida | 28 | 4.9 | |
| ISHli2 | IS5 | ISH1 | Halohasta litchfieldiae | 28 | 4.9 |
| ISNisp4 | IS256 | Nitrobacter sp. | 28 | 4.9 | |
| ISPa36 | IS21 | Pseudomonas aeruginosa | 28 | 4.9 | |
| ISPkr1 | IS21 | Paracoccus koreensis | 28 | 4.9 | |
| ISMno6 | IS6 | Methylobacterium nodulans | 28 | 4.9 | |
| ISAau3 | IS5 | IS5 | Arthrobacter aurescens | 28 | 4.9 |
| ISCph8 | IS1380 | Chlorobium phaeobacteroides | 28 | 4.9 | |
| ISPelu1 | IS1380 | Pelodictyon luteolum | 28 | 4.9 | |
| ISMgi1 | IS1380 | Mycobacterium gilvum | 28 | 4.9 | |
| ISSfu1 | IS1380 | Syntrophobacter fumaroxidans | 28 | 4.9 | |
| ISAzba7 | IS5 | IS427 | Azospirillum brasilense | 28 | 4.9 |
| ISMex16 | IS3 | IS150 | Methylobacterium extorquens | 28 | 4.9 |
| ISMdi13 | IS256 | Methylobacterium dichloromethanicum | 28 | 4.9 | |
| ISCARN55 | IS256 | Metagenomic data from CARNOULES | 28 | 4.9 | |
| ISAfe5 | IS3 | IS3 | Acidithiobacillus ferrooxidans | 28 | 4.9 |
| ISRhru2 | IS66 | ISBst12 | Rhodospirillum rubrum | 28 | 4.9 |
| ISRle4 | IS3 | IS407 | Rhizobium leguminosarum | 28 | 4.9 |
| ISLxx3 | IS21 | Leifsonia xyli | 28 | 4.9 | |
| ISPa42 | Tn3 | Pseudomonas aeruginosa | 28 | 4.9 | |
| IS666 | IS256 | - | Mycobacterium avium | 28 | 4.9 |
| IS1354 | IS256 | - | Methylobacterium dichloromethanicum | 28 | 4.9 |
| IS1311 | IS256 | - | Mycobacterium avium | 28 | 4.9 |
>ISBcen16
Length = 1445
Score = 32.2 bits (16), Expect = 0.32
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 225 gatgcccggcttgccg 240
||||||||||||||||
Sbjct: 783 gatgcccggcttgccg 768
>ISAeme3
Length = 1384
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 68 tccagcacctcggcc 82
|||||||||||||||
Sbjct: 869 tccagcacctcggcc 855
>ISGpo1
Length = 1432
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 95 gcccacgccggcaga 109
|||||||||||||||
Sbjct: 444 gcccacgccggcaga 430
>ISApr5
Length = 806
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 205 gcggcgtgatcccag 219
|||||||||||||||
Sbjct: 743 gcggcgtgatcccag 757
>ISSce1
Length = 4601
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 70 cagcacctcggcctc 84
|||||||||||||||
Sbjct: 3957 cagcacctcggcctc 3971
>IS884
Length = 1424
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 219 gcagcggatgcccgg 233
|||||||||||||||
Sbjct: 393 gcagcggatgcccgg 407
>ISPa1328
Length = 1328
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 55 atcggccaccgcgtc 69
|||||||||||||||
Sbjct: 527 atcggccaccgcgtc 513
>ISSna1
Length = 1560
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 60 ccaccgcgtccagc 73
||||||||||||||
Sbjct: 1083 ccaccgcgtccagc 1096
>ISTha3
Length = 2424
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 228 gcccggcttgccgc 241
||||||||||||||
Sbjct: 481 gcccggcttgccgc 468
>TnAs1
Length = 6694
Score = 28.2 bits (14), Expect = 4.9
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 69 ccagcacctcggcctcgc 86
|||||| |||||||||||
Sbjct: 4805 ccagcagctcggcctcgc 4788
>ISHli2
Length = 937
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 203 tcgcggcgtgatcc 216
||||||||||||||
Sbjct: 417 tcgcggcgtgatcc 404
>ISNisp4
Length = 1418
Score = 28.2 bits (14), Expect = 4.9
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 74 acctcggcctcgcccgcc 91
|||||||||||| |||||
Sbjct: 215 acctcggcctcgaccgcc 198
>ISPa36
Length = 2468
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 74 acctcggcctcgcc 87
||||||||||||||
Sbjct: 1198 acctcggcctcgcc 1185
>ISPkr1
Length = 2469
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 64 cgcgtccagcacct 77
||||||||||||||
Sbjct: 1637 cgcgtccagcacct 1624
>ISMno6
Length = 816
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 66 cgtccagcacctcg 79
||||||||||||||
Sbjct: 373 cgtccagcacctcg 360
>ISAau3
Length = 1205
Score = 28.2 bits (14), Expect = 4.9
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 57 cggccaccgcgtccagca 74
||||||||||| ||||||
Sbjct: 200 cggccaccgcggccagca 217
>ISCph8
Length = 1755
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 6 cggcatggcgcacc 19
||||||||||||||
Sbjct: 1423 cggcatggcgcacc 1410
>ISPelu1
Length = 1742
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 6 cggcatggcgcacc 19
||||||||||||||
Sbjct: 1420 cggcatggcgcacc 1407
>ISMgi1
Length = 1614
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 31 accgcacacccggc 44
||||||||||||||
Sbjct: 1309 accgcacacccggc 1322
>ISSfu1
Length = 1666
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 32 ccgcacacccggct 45
||||||||||||||
Sbjct: 519 ccgcacacccggct 532
>ISAzba7
Length = 852
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 228 gcccggcttgccgc 241
||||||||||||||
Sbjct: 423 gcccggcttgccgc 410
>ISMex16
Length = 1511
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 7 ggcatggcgcaccg 20
||||||||||||||
Sbjct: 1165 ggcatggcgcaccg 1152
>ISMdi13
Length = 1416
Score = 28.2 bits (14), Expect = 4.9
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 74 acctcggcctcgcccgcc 91
|||||||||||| |||||
Sbjct: 214 acctcggcctcgaccgcc 197
>ISCARN55
Length = 1364
Score = 28.2 bits (14), Expect = 4.9
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 48 catcgcaatcggccaccg 65
||||| ||||||||||||
Sbjct: 119 catcgtaatcggccaccg 102
>ISAfe5
Length = 1658
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 65 gcgtccagcacctc 78
||||||||||||||
Sbjct: 798 gcgtccagcacctc 785
>ISRhru2
Length = 1443
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 221 agcggatgcccggc 234
||||||||||||||
Sbjct: 551 agcggatgcccggc 538
>ISRle4
Length = 1272
Score = 28.2 bits (14), Expect = 4.9
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 231 cggcttgccgctctcctc 248
||||||||||| ||||||
Sbjct: 852 cggcttgccgcgctcctc 835
>ISLxx3
Length = 2637
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 228 gcccggcttgccgc 241
||||||||||||||
Sbjct: 1321 gcccggcttgccgc 1308
>ISPa42
Length = 16941
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 227 tgcccggcttgccg 240
||||||||||||||
Sbjct: 10369 tgcccggcttgccg 10382
>IS666
Length = 1472
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 95 gcccacgccggcag 108
||||||||||||||
Sbjct: 463 gcccacgccggcag 450
>IS1354
Length = 1431
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 72 gcacctcggcctcg 85
||||||||||||||
Sbjct: 200 gcacctcggcctcg 187
>IS1311
Length = 1416
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 65 gcgtccagcacctc 78
||||||||||||||
Sbjct: 157 gcgtccagcacctc 144
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_264_length_251_cov_0.683908_ID_5698
(251 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISRme4 | IS21 | Cupriavidus metallidurans | 32 | 0.32 | |
| IS1096 | ISL3 | - | Mycobacterium smegmatis | 32 | 0.32 |
| ISCph12 | IS5 | IS5 | Chlorobium phaeobacteroides | 30 | 1.2 |
| ISTsu1 | IS256 | Thermaerobacter subterraneus | 28 | 4.9 | |
| ISMdi14B | IS110 | IS1111 | Methylobacterium dichloromethanicum DM4 | 28 | 4.9 |
| ISBte1 | ISKra4 | ISAzba1 | Burkholderia terrae | 28 | 4.9 |
| ISPve1 | IS21 | Paracoccus versutus | 28 | 4.9 | |
| ISAzs18 | IS66 | Azospirillum sp. | 28 | 4.9 | |
| ISPmar2 | IS3 | IS407 | Paracoccus marcusii | 28 | 4.9 |
| ISSac3 | ISNCY | ISDol1 | Syntrophus aciditrophicus | 28 | 4.9 |
| ISEcB1 | IS3 | IS150 | Escherichia coli | 28 | 4.9 |
| ISCph13 | IS5 | IS5 | Chlorobium phaeobacteroides | 28 | 4.9 |
| ISSac2 | IS5 | IS5 | Syntrophus aciditrophicus | 28 | 4.9 |
| ISFsp13 | ISAzo13 | Frankia sp. | 28 | 4.9 | |
| ISFsp12 | ISAzo13 | Frankia sp. | 28 | 4.9 | |
| ISCli1 | IS1380 | Corynebacterium lipophiloflavum | 28 | 4.9 | |
| ISAtu6 | IS66 | - | Agrobacterium tumefaciens | 28 | 4.9 |
| ISCef6 | IS1380 | Corynebacterium efficiens | 28 | 4.9 | |
| ISCgl4 | IS1380 | Corynebacterium glutamicum | 28 | 4.9 | |
| ISAzo19 | IS66 | Azoarcus sp. | 28 | 4.9 | |
| ISDac1 | IS3 | IS3 | Desulfuromonas acetoxidans | 28 | 4.9 |
| ISPre3 | IS66 | Pseudomonas resinovorans | 28 | 4.9 | |
| ISBvi3 | IS3 | IS3 | Burkholderia vietnamiensis | 28 | 4.9 |
| ISBlo2 | IS21 | Bifidobacterium longum | 28 | 4.9 | |
| ISPsy2 | IS5 | IS5 | Pseudomonas syringae | 28 | 4.9 |
| ISNg1 | IS3 | IS150 | Neisseria gonorrhoeae | 28 | 4.9 |
| IS1131 | IS66 | - | Agrobacterium tumefaciens | 28 | 4.9 |
>ISRme4
Length = 2469
Score = 32.2 bits (16), Expect = 0.32
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 57 ctgcgcgacgtcaacc 72
||||||||||||||||
Sbjct: 744 ctgcgcgacgtcaacc 759
>IS1096
Length = 2259
Score = 32.2 bits (16), Expect = 0.32
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 188 tcgcggtgatcggcgt 203
||||||||||||||||
Sbjct: 605 tcgcggtgatcggcgt 620
>ISCph12
Length = 1635
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 150 gatgaagtactggag 164
|||||||||||||||
Sbjct: 401 gatgaagtactggag 387
>ISTsu1
Length = 1315
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 38 cttcagtgccgtcc 51
||||||||||||||
Sbjct: 1278 cttcagtgccgtcc 1265
>ISMdi14B
Length = 1315
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 212 tggagccatccggc 225
||||||||||||||
Sbjct: 252 tggagccatccggc 239
>ISBte1
Length = 2143
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 195 gatcggcgtttcga 208
||||||||||||||
Sbjct: 624 gatcggcgtttcga 637
>ISPve1
Length = 2503
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 48 gtccaggtcctgcg 61
||||||||||||||
Sbjct: 1372 gtccaggtcctgcg 1385
>ISAzs18
Length = 2633
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 40 tcagtgccgtccag 53
||||||||||||||
Sbjct: 2302 tcagtgccgtccag 2289
>ISPmar2
Length = 1269
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 221 ccggcttcgccatc 234
||||||||||||||
Sbjct: 1167 ccggcttcgccatc 1180
>ISSac3
Length = 1595
Score = 28.2 bits (14), Expect = 4.9
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 27 gccgcagtcatcttcagt 44
|||||| |||||||||||
Sbjct: 1523 gccgcaatcatcttcagt 1540
>ISEcB1
Length = 1441
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 220 tccggcttcgccat 233
||||||||||||||
Sbjct: 204 tccggcttcgccat 191
>ISCph13
Length = 1636
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 151 atgaagtactggag 164
||||||||||||||
Sbjct: 401 atgaagtactggag 388
>ISSac2
Length = 1595
Score = 28.2 bits (14), Expect = 4.9
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 27 gccgcagtcatcttcagt 44
|||||| |||||||||||
Sbjct: 1523 gccgcaatcatcttcagt 1540
>ISFsp13
Length = 1724
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 189 cgcggtgatcggcg 202
||||||||||||||
Sbjct: 1656 cgcggtgatcggcg 1643
>ISFsp12
Length = 1730
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 189 cgcggtgatcggcg 202
||||||||||||||
Sbjct: 1656 cgcggtgatcggcg 1643
>ISCli1
Length = 1687
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 68 caaccagacgacga 81
||||||||||||||
Sbjct: 1584 caaccagacgacga 1597
>ISAtu6
Length = 2798
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 201 cgtttcgatgatgg 214
||||||||||||||
Sbjct: 2311 cgtttcgatgatgg 2298
>ISCef6
Length = 1684
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 68 caaccagacgacga 81
||||||||||||||
Sbjct: 1581 caaccagacgacga 1594
>ISCgl4
Length = 1653
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 68 caaccagacgacga 81
||||||||||||||
Sbjct: 1550 caaccagacgacga 1563
>ISAzo19
Length = 2423
Score = 28.2 bits (14), Expect = 4.9
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 185 agttcgcggtgatcggcg 202
|||||| |||||||||||
Sbjct: 1197 agttcgaggtgatcggcg 1214
>ISDac1
Length = 1239
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 7 atggtgatgccttc 20
||||||||||||||
Sbjct: 591 atggtgatgccttc 578
>ISPre3
Length = 2957
Score = 28.2 bits (14), Expect = 4.9
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 152 tgaagtactggagtacgt 169
|||||| |||||||||||
Sbjct: 1196 tgaagttctggagtacgt 1213
>ISBvi3
Length = 1282
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 195 gatcggcgtttcga 208
||||||||||||||
Sbjct: 740 gatcggcgtttcga 753
>ISBlo2
Length = 2455
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 50 ccaggtcctgcgcg 63
||||||||||||||
Sbjct: 1920 ccaggtcctgcgcg 1907
>ISPsy2
Length = 1194
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 74 gacgacgagtcagg 87
||||||||||||||
Sbjct: 611 gacgacgagtcagg 624
>ISNg1
Length = 1447
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 225 cttcgccatcagac 238
||||||||||||||
Sbjct: 822 cttcgccatcagac 809
>IS1131
Length = 2773
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 201 cgtttcgatgatgg 214
||||||||||||||
Sbjct: 2289 cgtttcgatgatgg 2276
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_265_length_251_cov_0.689655_ID_5700
(251 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISSav3 | IS701 | Streptomyces avermitilis | 30 | 1.2 | |
| ISGur10 | IS3 | IS3 | Geobacter uraniumreducens | 28 | 4.9 |
>ISSav3
Length = 1400
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 50 cggggcaggccgggg 64
|||||||||||||||
Sbjct: 805 cggggcaggccgggg 791
>ISGur10
Length = 1593
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 3 ccgggatggccccc 16
||||||||||||||
Sbjct: 120 ccgggatggccccc 133
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_266_length_250_cov_0.843931_ID_5702
(250 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISBlo1 | IS21 | Bifidobacterium longum | 36 | 0.020 | |
| ISPa46 | IS256 | Pseudomonas aeruginosa | 32 | 0.31 | |
| ISAzba6 | IS630 | Azospirillum brasilense | 32 | 0.31 | |
| ISAcma7 | IS256 | Acaryochloris marina | 32 | 0.31 | |
| ISBlma5 | IS3 | IS407 | Blastopirellula marina | 32 | 0.31 |
| ISPa1328 | IS256 | Pseudomonas aeruginosa | 32 | 0.31 | |
| ISPa119 | IS110 | IS1111 | Pseudomonas aeruginosa | 30 | 1.2 |
| ISAzs17 | Tn3 | Azospirillum sp. | 30 | 1.2 | |
| ISArsp6 | Tn3 | Arthrobacter sp. | 30 | 1.2 | |
| ISShes10 | IS30 | Shewanella sp. | 30 | 1.2 | |
| ISAmas1 | IS256 | IS1249 | Actinobaculum massiliae | 30 | 1.2 |
| ISLxx3 | IS21 | Leifsonia xyli | 30 | 1.2 | |
| ISBlo10 | IS3 | Bifidobacterium longum | 30 | 1.2 | |
| ISPsy33 | IS4 | IS4 | Pseudomonas syringae | 28 | 4.9 |
| ISPa36 | IS21 | Pseudomonas aeruginosa | 28 | 4.9 | |
| ISAzs3 | IS1380 | Azospirillum sp. | 28 | 4.9 | |
| ISGvi6 | IS1182 | Gloeobacter violaceus | 28 | 4.9 | |
| ISMtsp20 | IS5 | IS1031 | Methylobacterium sp. | 28 | 4.9 |
| ISMtsp8 | IS21 | Methylobacterium sp. | 28 | 4.9 | |
| ISCde1 | IS66 | Candidatus Desulforudis audaxviator | 28 | 4.9 | |
| ISPam3 | IS3 | IS407 | Paracoccus aminophilus | 28 | 4.9 |
| ISAar24 | IS3 | IS3 | Arthrobacter arilaitensis | 28 | 4.9 |
| ISAcma47 | IS4 | IS10 | Acaryochloris marina | 28 | 4.9 |
| ISMex32 | IS5 | IS427 | Methylobacterium extorquens | 28 | 4.9 |
| ISMex26 | ISL3 | Methylobacterium extorquens | 28 | 4.9 | |
| ISMdi7 | IS21 | Methylobacterium dichloromethanicum | 28 | 4.9 | |
| ISMdi13 | IS256 | Methylobacterium dichloromethanicum | 28 | 4.9 | |
| ISMex8 | IS21 | Methylobacterium extorquens | 28 | 4.9 | |
| ISThi1 | IS5 | IS5 | Thioalkalivibrio sp. | 28 | 4.9 |
| ISThsp17 | IS1595 | ISPna2 | Thiomonas sp. | 28 | 4.9 |
| ISCARN15 | IS66 | Metagenomic data from CARNOULES | 28 | 4.9 | |
| ISVer1 | IS1595 | ISNwi1 | Bacterium Ellin514 | 28 | 4.9 |
| ISAfe7 | IS3 | IS51 | Acidithiobacillus ferrooxidans | 28 | 4.9 |
| ISGdi4 | IS630 | Gluconacetobacter diazotrophicus | 28 | 4.9 | |
| ISAli10 | IS66 | Azospirillum lipoferum | 28 | 4.9 | |
| ISArch14 | IS66 | ISBst12 | uncultured archaeon | 28 | 4.9 |
| ISPre2 | IS5 | IS5 | Pseudomonas resinovorans | 28 | 4.9 |
| ISHar6 | IS110 | IS1111 | Herminiimonas arsenicoxydans | 28 | 4.9 |
| ISVei2 | IS481 | Verminephrobacter eiseniae | 28 | 4.9 | |
| ISRhba3 | IS481 | Rhodobacterales bacterium | 28 | 4.9 | |
| ISVei3 | IS481 | Verminephrobacter eiseniae | 28 | 4.9 | |
| ISPosp2 | IS701 | Polaromonas sp. | 28 | 4.9 | |
| ISUnCu1 | IS110 | IS1111 | Uncultured bacterium | 28 | 4.9 |
| ISBlo5 | IS256 | Bifidobacterium longum | 28 | 4.9 | |
| ISBlo2 | IS21 | Bifidobacterium longum | 28 | 4.9 | |
| ISPsp1 | IS5 | IS5 | Pseudomonas sp | 28 | 4.9 |
| ISBm3 | IS481 | - | Brucella melitensis | 28 | 4.9 |
| IS6120 | IS256 | - | Mycobacterium smegmatis | 28 | 4.9 |
| IS1384 | IS5 | IS5 | Pseudomonas putida | 28 | 4.9 |
>ISBlo1
Length = 2590
Score = 36.2 bits (18), Expect = 0.020
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 150 ggcgagatcctgcgctcg 167
||||||||||||||||||
Sbjct: 1523 ggcgagatcctgcgctcg 1540
>ISPa46
Length = 1329
Score = 32.2 bits (16), Expect = 0.31
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 134 cagcgccgccttccag 149
||||||||||||||||
Sbjct: 1247 cagcgccgccttccag 1232
>ISAzba6
Length = 1138
Score = 32.2 bits (16), Expect = 0.31
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 113 ggtgctggcgctgacc 128
||||||||||||||||
Sbjct: 342 ggtgctggcgctgacc 357
>ISAcma7
Length = 1347
Score = 32.2 bits (16), Expect = 0.31
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 133 acagcgccgccttcca 148
||||||||||||||||
Sbjct: 1270 acagcgccgccttcca 1255
>ISBlma5
Length = 1296
Score = 32.2 bits (16), Expect = 0.31
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 200 agcggcgcgcgacctcggcc 219
|||||||||||| |||||||
Sbjct: 1172 agcggcgcgcgaactcggcc 1153
>ISPa1328
Length = 1328
Score = 32.2 bits (16), Expect = 0.31
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 134 cagcgccgccttccag 149
||||||||||||||||
Sbjct: 1247 cagcgccgccttccag 1232
>ISPa119
Length = 1378
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 195 ctggaagcggcgcgc 209
|||||||||||||||
Sbjct: 359 ctggaagcggcgcgc 373
>ISAzs17
Length = 7252
Score = 30.2 bits (15), Expect = 1.2
Identities = 21/23 (91%)
Strand = Plus / Minus
Query: 116 gctggcgctgaccctcaacagcg 138
||||||||||| || ||||||||
Sbjct: 3078 gctggcgctgatccgcaacagcg 3056
>ISArsp6
Length = 26712
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 90 agcctgccgccgctg 104
|||||||||||||||
Sbjct: 19775 agcctgccgccgctg 19761
>ISShes10
Length = 1113
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 64 tctacgccctgccgg 78
|||||||||||||||
Sbjct: 423 tctacgccctgccgg 437
>ISAmas1
Length = 1411
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 96 ccgccgctggctgcc 110
|||||||||||||||
Sbjct: 494 ccgccgctggctgcc 508
>ISLxx3
Length = 2637
Score = 30.2 bits (15), Expect = 1.2
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 29 cggcacgccgctgctggtg 47
|||||||||||||| ||||
Sbjct: 1559 cggcacgccgctgcgggtg 1577
>ISBlo10
Length = 1339
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 205 cgcgcgacctcggcc 219
|||||||||||||||
Sbjct: 303 cgcgcgacctcggcc 289
>ISPsy33
Length = 1429
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 202 cggcgcgcgacctc 215
||||||||||||||
Sbjct: 309 cggcgcgcgacctc 296
>ISPa36
Length = 2468
Score = 28.2 bits (14), Expect = 4.9
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 203 ggcgcgcgacctcggcct 220
|||| |||||||||||||
Sbjct: 1206 ggcgggcgacctcggcct 1189
>ISAzs3
Length = 1613
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 108 gccgcggtgctggc 121
||||||||||||||
Sbjct: 926 gccgcggtgctggc 913
>ISGvi6
Length = 1662
Score = 28.2 bits (14), Expect = 4.9
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 137 cgccgccttccagggcga 154
||||||||||||| ||||
Sbjct: 200 cgccgccttccagagcga 217
>ISMtsp20
Length = 926
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 176 gatgctgcccaagg 189
||||||||||||||
Sbjct: 270 gatgctgcccaagg 283
>ISMtsp8
Length = 2371
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 137 cgccgccttccagg 150
||||||||||||||
Sbjct: 669 cgccgccttccagg 682
>ISCde1
Length = 2422
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 91 gcctgccgccgctg 104
||||||||||||||
Sbjct: 1244 gcctgccgccgctg 1257
>ISPam3
Length = 1197
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 212 cctcggcctgtcgc 225
||||||||||||||
Sbjct: 128 cctcggcctgtcgc 115
>ISAar24
Length = 1270
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 95 gccgccgctggctg 108
||||||||||||||
Sbjct: 483 gccgccgctggctg 496
>ISAcma47
Length = 1142
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 116 gctggcgctgaccc 129
||||||||||||||
Sbjct: 708 gctggcgctgaccc 695
>ISMex32
Length = 861
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 27 cgcggcacgccgct 40
||||||||||||||
Sbjct: 460 cgcggcacgccgct 473
>ISMex26
Length = 1676
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 134 cagcgccgccttcc 147
||||||||||||||
Sbjct: 796 cagcgccgccttcc 809
>ISMdi7
Length = 2568
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 69 gccctgccggcggt 82
||||||||||||||
Sbjct: 1002 gccctgccggcggt 1015
>ISMdi13
Length = 1416
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 207 cgcgacctcggcct 220
||||||||||||||
Sbjct: 218 cgcgacctcggcct 205
>ISMex8
Length = 2597
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 69 gccctgccggcggt 82
||||||||||||||
Sbjct: 1003 gccctgccggcggt 1016
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 149 gggcgagatcctgc 162
||||||||||||||
Sbjct: 2453 gggcgagatcctgc 2466
>ISThi1
Length = 1191
Score = 28.2 bits (14), Expect = 4.9
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 208 gcgacctcggcctgtcgc 225
|||||| |||||||||||
Sbjct: 447 gcgaccgcggcctgtcgc 464
>ISThsp17
Length = 1044
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 91 gcctgccgccgctg 104
||||||||||||||
Sbjct: 204 gcctgccgccgctg 217
>ISCARN15
Length = 2427
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 236 cttgctgcacgtgc 249
||||||||||||||
Sbjct: 1704 cttgctgcacgtgc 1691
>ISVer1
Length = 2783
Score = 28.2 bits (14), Expect = 4.9
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 171 ttccagatgctgcccaag 188
|||||||||||| |||||
Sbjct: 2452 ttccagatgctggccaag 2435
>ISAfe7
Length = 1329
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 204 gcgcgcgacctcgg 217
||||||||||||||
Sbjct: 631 gcgcgcgacctcgg 618
>ISGdi4
Length = 1176
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 87 atcagcctgccgcc 100
||||||||||||||
Sbjct: 447 atcagcctgccgcc 434
>ISAli10
Length = 2584
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 37 cgctgctggtgcag 50
||||||||||||||
Sbjct: 584 cgctgctggtgcag 597
>ISArch14
Length = 1560
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 46 tgcagctgatcctg 59
||||||||||||||
Sbjct: 220 tgcagctgatcctg 207
>ISPre2
Length = 1190
Score = 28.2 bits (14), Expect = 4.9
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 208 gcgacctcggcctgtcgc 225
|||||| |||||||||||
Sbjct: 447 gcgaccgcggcctgtcgc 464
>ISHar6
Length = 1359
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 84 ggtatcagcctgcc 97
||||||||||||||
Sbjct: 514 ggtatcagcctgcc 527
>ISVei2
Length = 1082
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 230 gcagaccttgctgc 243
||||||||||||||
Sbjct: 931 gcagaccttgctgc 944
>ISRhba3
Length = 999
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 193 aactggaagcggcg 206
||||||||||||||
Sbjct: 555 aactggaagcggcg 542
>ISVei3
Length = 1080
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 230 gcagaccttgctgc 243
||||||||||||||
Sbjct: 929 gcagaccttgctgc 942
>ISPosp2
Length = 1484
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 220 tgtcgccgctgcag 233
||||||||||||||
Sbjct: 164 tgtcgccgctgcag 177
>ISUnCu1
Length = 1381
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 15 gtcagctttttccg 28
||||||||||||||
Sbjct: 962 gtcagctttttccg 949
>ISBlo5
Length = 1366
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 176 gatgctgcccaagg 189
||||||||||||||
Sbjct: 841 gatgctgcccaagg 854
>ISBlo2
Length = 2455
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 56 cctggtgttctacg 69
||||||||||||||
Sbjct: 1916 cctggtgttctacg 1929
>ISPsp1
Length = 1188
Score = 28.2 bits (14), Expect = 4.9
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 208 gcgacctcggcctgtcgc 225
|||||| |||||||||||
Sbjct: 447 gcgaccgcggcctgtcgc 464
>ISBm3
Length = 1022
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 88 tcagcctgccgccg 101
||||||||||||||
Sbjct: 162 tcagcctgccgccg 149
>IS6120
Length = 1486
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 208 gcgacctcggcctg 221
||||||||||||||
Sbjct: 266 gcgacctcggcctg 253
>IS1384
Length = 1178
Score = 28.2 bits (14), Expect = 4.9
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 208 gcgacctcggcctgtcgc 225
|||||| |||||||||||
Sbjct: 441 gcgaccgcggcctgtcgc 458
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_267_length_250_cov_0.843931_ID_5704
(250 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISShsp2 | IS1182 | Sphingomonas sp. | 42 | 3e-04 | |
| ISCausp2 | IS1595 | ISNha5 | Caulobacter sp. | 38 | 0.005 |
| ISMyma10 | IS3 | IS51 | Mycobacterium marinum | 36 | 0.020 |
| ISThsp17 | IS1595 | ISPna2 | Thiomonas sp. | 34 | 0.079 |
| ISGsp5 | ISLre2 | Geobacillus sp. | 32 | 0.31 | |
| ISH31 | ISH6 | Halobacterium sp. | 32 | 0.31 | |
| ISAzs21 | IS66 | Azospirillum sp. | 32 | 0.31 | |
| ISPko1 | IS5 | IS903 | Paracoccus kondratievae | 32 | 0.31 |
| ISMex39 | IS21 | Methylobacterium extorquens | 32 | 0.31 | |
| ISAnsp3 | IS66 | Anaeromyxobacter sp. | 32 | 0.31 | |
| ISDds5 | IS982 | Deinococcus deserti | 32 | 0.31 | |
| ISMca1 | IS5 | Methylococcus capsulatus | 32 | 0.31 | |
| ISGsp3 | ISLre2 | Geobacillus sp. | 32 | 0.31 | |
| ISHla10 | ISH6 | Halorubrum lacusprofundi | 32 | 0.31 | |
| ISButh6 | IS5 | Burkholderia thailandensis | 30 | 1.2 | |
| ISAar34 | ISL3 | Arthrobacter arilaitensis | 30 | 1.2 | |
| ISMdi13 | IS256 | Methylobacterium dichloromethanicum | 30 | 1.2 | |
| ISGdi14 | IS3 | IS51 | Gluconacetobacter diazotrophicus | 30 | 1.2 |
| ISDds4 | IS982 | Deinococcus deserti | 30 | 1.2 | |
| ISAau4 | Tn3 | Arthrobacter aurescens | 30 | 1.2 | |
| ISMno1 | ISAs1 | Methylobacterium nodulans | 30 | 1.2 | |
| ISSam1 | IS110 | Streptomyces ambofaciens | 30 | 1.2 | |
| ISBxe3 | IS481 | Burkholderia xenovorans | 30 | 1.2 | |
| ISFsp8 | IS3 | IS3 | Frankia sp. | 30 | 1.2 |
| ISTth3 | IS1634 | Thermus thermophilus | 30 | 1.2 | |
| ISXo14 | IS4 | IS10 | Xanthomonas oryzae | 30 | 1.2 |
| ISXac1 | IS4 | IS10 | Xanthomonas axonopodis | 30 | 1.2 |
| ISDra4 | IS630 | Deinococcus radiodurans | 30 | 1.2 | |
| ISLxx1 | IS21 | Leifsonia xyli | 30 | 1.2 | |
| ISBlo1 | IS21 | Bifidobacterium longum | 30 | 1.2 | |
| ISXc4 | Tn3 | - | Xanthomonas campestris | 30 | 1.2 |
| ISXaca1 | IS4 | IS10 | Xanthomonas campestris | 30 | 1.2 |
| ISPa42 | Tn3 | Pseudomonas aeruginosa | 30 | 1.2 | |
| IS110 | IS110 | - | Streptomyces coelicolor | 30 | 1.2 |
| ISTha3 | IS91 | Thauera sp. | 28 | 4.9 | |
| ISNpe26 | IS200/IS605 | IS1341 | Natrinema pellirubrum | 28 | 4.9 |
| TnShfr1 | Tn3 | Shewanella frigidimarina | 28 | 4.9 | |
| ISBte2 | ISKra4 | ISAzba1 | Burkholderia terrae | 28 | 4.9 |
| ISMgi5 | IS256 | Mycobacterium gilvum | 28 | 4.9 | |
| ISPa43 | Tn3 | Pseudomonas aeruginosa | 28 | 4.9 | |
| ISMch9 | IS5 | IS427 | Methylobacterium chloromethanicum | 28 | 4.9 |
| ISAcfe2 | IS1182 | Acidimicrobium ferrooxidans | 28 | 4.9 | |
| ISAcfe1 | IS1182 | Acidimicrobium ferrooxidans | 28 | 4.9 | |
| ISPpa7 | IS66 | Paracoccus pantotrophus | 28 | 4.9 | |
| ISButh5 | IS5 | Burkholderia thailandensis | 28 | 4.9 | |
| ISArsp6 | Tn3 | Arthrobacter sp. | 28 | 4.9 | |
| ISArsp5 | IS110 | Arthrobacter sp. | 28 | 4.9 | |
| ISCpe8 | IS1595 | ISPna2 | Clostridium perfringens | 28 | 4.9 |
| ISNosp1 | IS1380 | Nocardioides sp. | 28 | 4.9 | |
| ISAar9 | IS1380 | Arthrobacter arilaitensis | 28 | 4.9 | |
| ISAde3 | IS3 | IS407 | Anaeromyxobacter dehalogenans | 28 | 4.9 |
| ISAnsp10 | IS630 | Anaeromyxobacter sp. | 28 | 4.9 | |
| ISMex27 | IS21 | Methylobacterium extorquens | 28 | 4.9 | |
| ISMex14 | IS256 | Methylobacterium extorquens | 28 | 4.9 | |
| ISThsp18 | IS1182 | Thiomonas sp. | 28 | 4.9 | |
| ISCARN72 | IS630 | Metagenomic data from CARNOULES | 28 | 4.9 | |
| ISSav7 | IS481 | Streptomyces avermitilis | 28 | 4.9 | |
| ISThsp3 | IS66 | Thiomonas sp. | 28 | 4.9 | |
| ISMasp4 | IS66 | ISBst12 | Magnetococcus sp. | 28 | 4.9 |
| ISDge17 | IS630 | Deinococcus geothermalis | 28 | 4.9 | |
| IS1557 | ISL3 | Mycobacterium tuberculosis | 28 | 4.9 | |
| ISTesp2 | ISL3 | Terrabacter sp. | 28 | 4.9 | |
| ISCsp2 | IS1595 | ISSod11 | Comamonas sp | 28 | 4.9 |
| ISAisp1 | IS1595 | ISSod11 | Acidovorax sp. | 28 | 4.9 |
| IS1481A | IS4 | is10 | Xanthomonas campestris | 28 | 4.9 |
>ISShsp2
Length = 1526
Score = 42.1 bits (21), Expect = 3e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 48 cggtgcgccaggccgaggtga 68
|||||||||||||||||||||
Sbjct: 796 cggtgcgccaggccgaggtga 816
>ISCausp2
Length = 7915
Score = 38.2 bits (19), Expect = 0.005
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 67 gatcgacgcctatctcgaccgcg 89
|||||||||| ||||||||||||
Sbjct: 6075 gatcgacgccgatctcgaccgcg 6097
>ISMyma10
Length = 1352
Score = 36.2 bits (18), Expect = 0.020
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 49 ggtgcgccaggccgaggt 66
||||||||||||||||||
Sbjct: 1158 ggtgcgccaggccgaggt 1141
>ISThsp17
Length = 1044
Score = 34.2 bits (17), Expect = 0.079
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 46 cacggtgcgccaggccg 62
|||||||||||||||||
Sbjct: 380 cacggtgcgccaggccg 396
>ISGsp5
Length = 1706
Score = 32.2 bits (16), Expect = 0.31
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 233 cccaaccaccatcccg 248
||||||||||||||||
Sbjct: 1550 cccaaccaccatcccg 1535
>ISH31
Length = 1445
Score = 32.2 bits (16), Expect = 0.31
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 80 ctcgaccgcgtgctcggcga 99
|||||| |||||||||||||
Sbjct: 1183 ctcgacagcgtgctcggcga 1164
>ISAzs21
Length = 2598
Score = 32.2 bits (16), Expect = 0.31
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 50 gtgcgccaggccgagg 65
||||||||||||||||
Sbjct: 2151 gtgcgccaggccgagg 2166
>ISPko1
Length = 1050
Score = 32.2 bits (16), Expect = 0.31
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 152 gccggcgcggtcgcac 167
||||||||||||||||
Sbjct: 751 gccggcgcggtcgcac 766
>ISMex39
Length = 2456
Score = 32.2 bits (16), Expect = 0.31
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 86 cgcgtgctcggcgacg 101
||||||||||||||||
Sbjct: 1185 cgcgtgctcggcgacg 1170
>ISAnsp3
Length = 2518
Score = 32.2 bits (16), Expect = 0.31
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 85 ccgcgtgctcggcgac 100
||||||||||||||||
Sbjct: 1753 ccgcgtgctcggcgac 1768
>ISDds5
Length = 845
Score = 32.2 bits (16), Expect = 0.31
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 8 aaacgcatcgaaaccg 23
||||||||||||||||
Sbjct: 710 aaacgcatcgaaaccg 725
>ISMca1
Length = 1336
Score = 32.2 bits (16), Expect = 0.31
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 3 tgcgcaaacgcatcga 18
||||||||||||||||
Sbjct: 1014 tgcgcaaacgcatcga 1029
>ISGsp3
Length = 1709
Score = 32.2 bits (16), Expect = 0.31
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 233 cccaaccaccatcccg 248
||||||||||||||||
Sbjct: 1553 cccaaccaccatcccg 1538
>ISHla10
Length = 1444
Score = 32.2 bits (16), Expect = 0.31
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 80 ctcgaccgcgtgctcggcga 99
|||||| |||||||||||||
Sbjct: 1182 ctcgacagcgtgctcggcga 1163
>ISButh6
Length = 1349
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 5 cgcaaacgcatcgaa 19
|||||||||||||||
Sbjct: 1019 cgcaaacgcatcgaa 1033
>ISAar34
Length = 1438
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 46 cacggtgcgccaggc 60
|||||||||||||||
Sbjct: 515 cacggtgcgccaggc 501
>ISMdi13
Length = 1416
Score = 30.2 bits (15), Expect = 1.2
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 93 tcggcgacgtccgcctcgc 111
|||||| ||||||||||||
Sbjct: 373 tcggcggcgtccgcctcgc 355
>ISGdi14
Length = 1318
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 65 gtgatcgacgcctat 79
|||||||||||||||
Sbjct: 830 gtgatcgacgcctat 844
>ISDds4
Length = 845
Score = 30.2 bits (15), Expect = 1.2
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 5 cgcaaacgcatcgaaaccg 23
|||||||||||||| ||||
Sbjct: 707 cgcaaacgcatcgagaccg 725
>ISAau4
Length = 3898
Score = 30.2 bits (15), Expect = 1.2
Identities = 22/23 (95%), Gaps = 1/23 (4%)
Strand = Plus / Minus
Query: 150 tggccggcg-cggtcgcacccca 171
||||||||| |||||||||||||
Sbjct: 1354 tggccggcggcggtcgcacccca 1332
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 42 ccggcacggtgcgc 55
||||||||||||||
Sbjct: 2338 ccggcacggtgcgc 2351
>ISMno1
Length = 1218
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 38 ggcaccggcacggtg 52
|||||||||||||||
Sbjct: 892 ggcaccggcacggtg 906
>ISSam1
Length = 1489
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 102 tccgcctcgcccgcc 116
|||||||||||||||
Sbjct: 1378 tccgcctcgcccgcc 1392
>ISBxe3
Length = 1279
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 57 aggccgaggtgatcg 71
|||||||||||||||
Sbjct: 847 aggccgaggtgatcg 861
>ISFsp8
Length = 1297
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 100 cgtccgcctcgcccg 114
|||||||||||||||
Sbjct: 599 cgtccgcctcgcccg 613
>ISTth3
Length = 1682
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 196 ggtcaccgagctgtt 210
|||||||||||||||
Sbjct: 353 ggtcaccgagctgtt 367
>ISXo14
Length = 1352
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 124 gatcgtcatcgactg 138
|||||||||||||||
Sbjct: 393 gatcgtcatcgactg 407
>ISXac1
Length = 1350
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 124 gatcgtcatcgactg 138
|||||||||||||||
Sbjct: 392 gatcgtcatcgactg 406
>ISDra4
Length = 1048
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 10 acgcatcgaaaccgg 24
|||||||||||||||
Sbjct: 125 acgcatcgaaaccgg 139
>ISLxx1
Length = 2205
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 101 gtccgcctcgcccgc 115
|||||||||||||||
Sbjct: 972 gtccgcctcgcccgc 986
>ISBlo1
Length = 2590
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 86 cgcgtgctcggcgac 100
|||||||||||||||
Sbjct: 2359 cgcgtgctcggcgac 2373
>ISXc4
Length = 6938
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 124 gatcgtcatcgactg 138
|||||||||||||||
Sbjct: 5367 gatcgtcatcgactg 5381
>ISXaca1
Length = 1350
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 124 gatcgtcatcgactg 138
|||||||||||||||
Sbjct: 392 gatcgtcatcgactg 406
>ISPa42
Length = 16941
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 91 gctcggcgacgtccg 105
|||||||||||||||
Sbjct: 929 gctcggcgacgtccg 915
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 132 tcgactgcggcaac 145
||||||||||||||
Sbjct: 12322 tcgactgcggcaac 12335
>IS110
Length = 1558
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 102 tccgcctcgcccgcc 116
|||||||||||||||
Sbjct: 1385 tccgcctcgcccgcc 1399
>ISTha3
Length = 2424
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 185 ctcggctgcgaggt 198
||||||||||||||
Sbjct: 655 ctcggctgcgaggt 642
>ISNpe26
Length = 1468
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 41 accggcacggtgcg 54
||||||||||||||
Sbjct: 179 accggcacggtgcg 166
>TnShfr1
Length = 5131
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 50 gtgcgccaggccga 63
||||||||||||||
Sbjct: 2480 gtgcgccaggccga 2467
>ISBte2
Length = 1517
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 75 cctatctcgaccgc 88
||||||||||||||
Sbjct: 1257 cctatctcgaccgc 1270
>ISMgi5
Length = 1470
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 108 tcgcccgcccgatg 121
||||||||||||||
Sbjct: 298 tcgcccgcccgatg 285
>ISPa43
Length = 19903
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 156 gcgcggtcgcaccc 169
||||||||||||||
Sbjct: 12189 gcgcggtcgcaccc 12202
>ISMch9
Length = 848
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 175 cttccgccgcctcg 188
||||||||||||||
Sbjct: 734 cttccgccgcctcg 747
>ISAcfe2
Length = 1771
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 58 ggccgaggtgatcg 71
||||||||||||||
Sbjct: 477 ggccgaggtgatcg 490
>ISAcfe1
Length = 1772
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 58 ggccgaggtgatcg 71
||||||||||||||
Sbjct: 477 ggccgaggtgatcg 490
>ISPpa7
Length = 2731
Score = 28.2 bits (14), Expect = 4.9
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 36 acggcaccggcacggtgc 53
|||||||||||| |||||
Sbjct: 695 acggcaccggcatggtgc 712
>ISButh5
Length = 1350
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 5 cgcaaacgcatcga 18
||||||||||||||
Sbjct: 1020 cgcaaacgcatcga 1033
>ISArsp6
Length = 26712
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 151 ggccggcgcggtcg 164
||||||||||||||
Sbjct: 6951 ggccggcgcggtcg 6938
>ISArsp5
Length = 1426
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 139 cggcaacggcgtgg 152
||||||||||||||
Sbjct: 276 cggcaacggcgtgg 263
>ISCpe8
Length = 1964
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 232 ccccaaccaccatc 245
||||||||||||||
Sbjct: 1385 ccccaaccaccatc 1372
>ISNosp1
Length = 1678
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 147 gcgtggccggcgcg 160
||||||||||||||
Sbjct: 436 gcgtggccggcgcg 423
>ISAar9
Length = 1735
Score = 28.2 bits (14), Expect = 4.9
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 222 acggcaacttccccaacc 239
|||||| |||||||||||
Sbjct: 1268 acggcagcttccccaacc 1251
>ISAde3
Length = 1183
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 4 gcgcaaacgcatcg 17
||||||||||||||
Sbjct: 617 gcgcaaacgcatcg 630
>ISAnsp10
Length = 1185
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 81 tcgaccgcgtgctc 94
||||||||||||||
Sbjct: 411 tcgaccgcgtgctc 398
>ISMex27
Length = 2493
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 85 ccgcgtgctcggcg 98
||||||||||||||
Sbjct: 663 ccgcgtgctcggcg 676
>ISMex14
Length = 1381
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 220 cgacggcaacttcc 233
||||||||||||||
Sbjct: 166 cgacggcaacttcc 179
>ISThsp18
Length = 1330
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 90 tgctcggcgacgtc 103
||||||||||||||
Sbjct: 808 tgctcggcgacgtc 821
>ISCARN72
Length = 1111
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 219 tcgacggcaacttc 232
||||||||||||||
Sbjct: 730 tcgacggcaacttc 743
>ISSav7
Length = 2992
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 88 cgtgctcggcgacg 101
||||||||||||||
Sbjct: 724 cgtgctcggcgacg 737
>ISThsp3
Length = 2455
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 210 tctgcgaggtcgac 223
||||||||||||||
Sbjct: 2284 tctgcgaggtcgac 2297
>ISMasp4
Length = 1969
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 224 ggcaacttccccaa 237
||||||||||||||
Sbjct: 938 ggcaacttccccaa 925
>ISDge17
Length = 1071
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 104 cgcctcgcccgccc 117
||||||||||||||
Sbjct: 1022 cgcctcgcccgccc 1035
>IS1557
Length = 1509
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 47 acggtgcgccaggc 60
||||||||||||||
Sbjct: 562 acggtgcgccaggc 549
>ISTesp2
Length = 1397
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 47 acggtgcgccaggc 60
||||||||||||||
Sbjct: 512 acggtgcgccaggc 499
>ISCsp2
Length = 1089
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 71 gacgcctatctcga 84
||||||||||||||
Sbjct: 874 gacgcctatctcga 887
>ISAisp1
Length = 1086
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 71 gacgcctatctcga 84
||||||||||||||
Sbjct: 872 gacgcctatctcga 885
>IS1481A
Length = 1350
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 125 atcgtcatcgactg 138
||||||||||||||
Sbjct: 394 atcgtcatcgactg 407
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_268_length_250_cov_0.843931_ID_5706
(250 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISRsp13 | IS5 | Rhizhobium sp. | 30 | 1.2 | |
| ISKpn25 | ISL3 | Klebsiella pneumoniae | 30 | 1.2 | |
| ISCARN56 | IS607 | Metagenomic data from CARNOULES | 30 | 1.2 | |
| ISSod8 | IS6 | Shewanella oneidensis | 30 | 1.2 | |
| ISLdl2 | IS256 | - | Lactobacillus delbrueckii | 30 | 1.2 |
| ISAba24 | IS66 | Acinetobacter baumannii | 28 | 4.9 | |
| ISGsp4 | ISLre2 | Geobacillus sp. | 28 | 4.9 | |
| ISPa30 | IS66 | Pseudomonas aeruginosa | 28 | 4.9 | |
| ISVsp8 | IS1380 | Verrucomicrobium spinosum | 28 | 4.9 | |
| ISVsp19 | IS1380 | Verrucomicrobium spinosum | 28 | 4.9 | |
| ISRssp5 | IS5 | IS903 | Roseovarius sp. | 28 | 4.9 |
| ISGme3 | IS5 | IS5 | Geobacter metallireducens | 28 | 4.9 |
| ISPst5 | IS5 | IS5 | Pseudomonas stutzeri | 28 | 4.9 |
| ISRm2011-2 | IS630 | - | Rhizobium meliloti | 28 | 4.9 |
| ISBf2 | IS21 | - | Bacteroides fragilis | 28 | 4.9 |
>ISRsp13
Length = 1353
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 1 cgaactgcgccagat 15
|||||||||||||||
Sbjct: 992 cgaactgcgccagat 1006
>ISKpn25
Length = 8154
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 8 cgccagattctggac 22
|||||||||||||||
Sbjct: 1484 cgccagattctggac 1498
>ISCARN56
Length = 1894
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 196 acgccgaacgggcat 210
|||||||||||||||
Sbjct: 91 acgccgaacgggcat 105
>ISSod8
Length = 826
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 100 ccgcacacgcttttt 114
|||||||||||||||
Sbjct: 412 ccgcacacgcttttt 426
>ISLdl2
Length = 1367
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 210 tgtatctcgacgcca 224
|||||||||||||||
Sbjct: 605 tgtatctcgacgcca 619
>ISAba24
Length = 2421
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 111 ttttgccaggcatc 124
||||||||||||||
Sbjct: 627 ttttgccaggcatc 614
>ISGsp4
Length = 1707
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 202 aacgggcatgtatc 215
||||||||||||||
Sbjct: 1225 aacgggcatgtatc 1238
>ISPa30
Length = 2436
Score = 28.2 bits (14), Expect = 4.9
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 5 ctgcgccagattctggac 22
||||||||||||| ||||
Sbjct: 1010 ctgcgccagattcaggac 993
>ISVsp8
Length = 1802
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 119 ggcatcgagcttcg 132
||||||||||||||
Sbjct: 992 ggcatcgagcttcg 979
>ISVsp19
Length = 1802
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 119 ggcatcgagcttcg 132
||||||||||||||
Sbjct: 992 ggcatcgagcttcg 979
>ISRssp5
Length = 1047
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 128 cttcgaccgccaag 141
||||||||||||||
Sbjct: 900 cttcgaccgccaag 913
>ISGme3
Length = 1484
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 119 ggcatcgagcttcg 132
||||||||||||||
Sbjct: 649 ggcatcgagcttcg 662
>ISPst5
Length = 1191
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 144 ctgaagtagtcagg 157
||||||||||||||
Sbjct: 1184 ctgaagtagtcagg 1171
>ISRm2011-2
Length = 1053
Score = 28.2 bits (14), Expect = 4.9
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 1 cgaactgcgccagattct 18
|||||||||||| |||||
Sbjct: 959 cgaactgcgccacattct 976
>ISBf2
Length = 2544
Score = 28.2 bits (14), Expect = 4.9
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 96 atgtccgcacacgctttt 113
||||||||||| ||||||
Sbjct: 1577 atgtccgcacaggctttt 1560
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_269_length_250_cov_1.26012_ID_5708
(250 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISGob4 | IS66 | ISBst12 | Gemmata obscuriglobus | 38 | 0.005 |
| ISMno6 | IS6 | Methylobacterium nodulans | 32 | 0.31 | |
| ISArsp6 | Tn3 | Arthrobacter sp. | 32 | 0.31 | |
| ISAeme24 | IS66 | ISBst12 | Aeromonas media | 30 | 1.2 |
| ISGte1 | IS256 | Gordonia terrae | 30 | 1.2 | |
| ISMav9 | ISNCY | ISDol1 | Mycobacterium avium | 28 | 4.9 |
| ISSoEn1 | IS5 | IS903 | Primary endosymbiont of Sitophilus oryzae | 28 | 4.9 |
| ISPa38 | Tn3 | Pseudomonas aeruginosa | 28 | 4.9 | |
| ISGeob4 | IS5 | ISL2 | Geodermatophilus obscurus | 28 | 4.9 |
| ISPaes2 | IS5 | IS427 | Paracoccus aestuarii | 28 | 4.9 |
| ISPak1 | IS5 | IS427 | Paracoccus alkenifer | 28 | 4.9 |
| ISPfr19 | IS481 | Propionibacterium freudenreichii | 28 | 4.9 | |
| ISGur4 | IS4 | IS4Sa | Geobacter uraniumreducens | 28 | 4.9 |
| ISEc12 | IS21 | Escherichia coli | 28 | 4.9 | |
| ISSs1 | IS200/IS605 | IS1341 | Synechococcus sp. | 28 | 4.9 |
| ISRm14 | IS66 | - | Sinorhizobium meliloti | 28 | 4.9 |
>ISGob4
Length = 1576
Score = 38.2 bits (19), Expect = 0.005
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 190 ggatcaggaacgccaccac 208
|||||||||||||||||||
Sbjct: 866 ggatcaggaacgccaccac 848
>ISMno6
Length = 816
Score = 32.2 bits (16), Expect = 0.31
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 177 gcccgcttgcgctgga 192
||||||||||||||||
Sbjct: 545 gcccgcttgcgctgga 530
>ISArsp6
Length = 26712
Score = 32.2 bits (16), Expect = 0.31
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 1 cagccaggacagcagc 16
||||||||||||||||
Sbjct: 3496 cagccaggacagcagc 3511
>ISAeme24
Length = 1557
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 119 ccgtcatgaccgctg 133
|||||||||||||||
Sbjct: 1490 ccgtcatgaccgctg 1476
>ISGte1
Length = 1503
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 218 gataccggccaggtc 232
|||||||||||||||
Sbjct: 190 gataccggccaggtc 204
>ISMav9
Length = 1572
Score = 28.2 bits (14), Expect = 4.9
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 217 cgataccggccaggtctg 234
||||||||||||| ||||
Sbjct: 783 cgataccggccagttctg 766
>ISSoEn1
Length = 1055
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 45 tgatccggttaagc 58
||||||||||||||
Sbjct: 961 tgatccggttaagc 948
>ISPa38
Length = 6455
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 112 caacaggccgtcat 125
||||||||||||||
Sbjct: 6302 caacaggccgtcat 6289
>ISGeob4
Length = 982
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 215 cccgataccggcca 228
||||||||||||||
Sbjct: 506 cccgataccggcca 519
>ISPaes2
Length = 841
Score = 28.2 bits (14), Expect = 4.9
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 119 ccgtcatgaccgctgccc 136
|||| |||||||||||||
Sbjct: 749 ccgttatgaccgctgccc 766
>ISPak1
Length = 853
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 203 caccaccgcaagcc 216
||||||||||||||
Sbjct: 205 caccaccgcaagcc 192
>ISPfr19
Length = 1089
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 117 ggccgtcatgaccg 130
||||||||||||||
Sbjct: 797 ggccgtcatgaccg 810
>ISGur4
Length = 1335
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 185 gcgctggatcagga 198
||||||||||||||
Sbjct: 351 gcgctggatcagga 364
>ISEc12
Length = 2581
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 193 tcaggaacgccacc 206
||||||||||||||
Sbjct: 816 tcaggaacgccacc 803
>ISSs1
Length = 1481
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 60 tgggttcggattcc 73
||||||||||||||
Sbjct: 518 tgggttcggattcc 531
>ISRm14
Length = 2695
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 92 gcgccggaatccgg 105
||||||||||||||
Sbjct: 1456 gcgccggaatccgg 1443
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_270_length_250_cov_0.757225_ID_5710
(250 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISGdi15 | IS110 | IS1111 | Gluconacetobacter diazotrophicus | 34 | 0.079 |
| ISMsm12 | IS1380 | Mycobacterium smegmatis | 32 | 0.31 | |
| ISAar4 | IS3 | IS3 | Arthrobacter arilaitensis | 32 | 0.31 |
| IS220 | IS1380 | - | Mycobacterium fortuitum | 32 | 0.31 |
| TnAs3 | Tn3 | Aeromonas salmonicida | 30 | 1.2 | |
| ISHel1 | IS200/IS605 | IS1341 | Haloferax elongans | 30 | 1.2 |
| ISNpe27 | IS200/IS605 | IS1341 | Natrinema pellirubrum | 30 | 1.2 |
| TnAs2 | Tn3 | Aeromonas salmonicida | 30 | 1.2 | |
| ISPa34 | IS110 | IS1111 | Pseudomonas aeruginosa | 30 | 1.2 |
| ISAau2 | IS21 | Arthrobacter aurescens | 30 | 1.2 | |
| ISRjo1 | IS1380 | Rhodococcus jostii | 30 | 1.2 | |
| ISThsp7 | IS1634 | Thiomonas sp. | 30 | 1.2 | |
| ISAfe8 | IS200/IS605 | IS1341 | Acidithiobacillus ferrooxidans | 30 | 1.2 |
| ISBlma9 | IS66 | Blastopirellula marina | 30 | 1.2 | |
| ISTth7 | IS5 | Thermus thermophilus | 30 | 1.2 | |
| ISAzo9 | IS630 | Azoarcus sp. | 30 | 1.2 | |
| ISNch1 | IS200/IS605 | IS1341 | Natrialba chahannaoensis | 28 | 4.9 |
| ISNje1 | IS200/IS605 | IS1341 | Natronococcus jeotgali | 28 | 4.9 |
| ISHaru1 | IS200/IS605 | IS1341 | Halobellus rufus | 28 | 4.9 |
| ISHtu6 | IS200/IS605 | IS1341 | Haloterrigena turkmenica | 28 | 4.9 |
| TnShfr1 | Tn3 | Shewanella frigidimarina | 28 | 4.9 | |
| ISPko3 | IS5 | IS903 | Paracoccus kondratievae | 28 | 4.9 |
| ISTco4 | ISLre2 | Thermobacillus composti | 28 | 4.9 | |
| ISMme1 | ISAzo13 | Mesorhizobium metallidurans | 28 | 4.9 | |
| ISPa38 | Tn3 | Pseudomonas aeruginosa | 28 | 4.9 | |
| ISPso3 | IS5 | IS5 | Paracoccus solventivorans | 28 | 4.9 |
| ISPmar3 | IS5 | IS5 | Paracoccus marcusii | 28 | 4.9 |
| ISMno32 | IS1182 | Methylobacterium nodulans | 28 | 4.9 | |
| ISMex12 | IS110 | Methylobacterium extorquens | 28 | 4.9 | |
| ISThsp11 | IS3 | IS3 | Thiomonas sp. | 28 | 4.9 |
| ISAzo22 | IS110 | Azoarcus sp. | 28 | 4.9 | |
| ISCARN22 | IS66 | Metagenomic data from CARNOULES | 28 | 4.9 | |
| ISCARN18 | IS110 | IS1111 | Metagenomic data from CARNOULES | 28 | 4.9 |
| ISSpu18 | IS481 | Shewanella putrefaciens | 28 | 4.9 | |
| ISBj7_B | IS66 | Bradyrhizobium japonicum | 28 | 4.9 | |
| ISCARN1 | IS607 | Metagenomic data from CARNOULES | 28 | 4.9 | |
| ISAfe10 | IS607 | Acidithiobacillus ferrooxidans | 28 | 4.9 | |
| ISAzca2 | IS66 | Azorhizobium caulinodans | 28 | 4.9 | |
| ISNwi2 | IS1595 | ISNwi1 | Nitrobacter winogradskyi | 28 | 4.9 |
| ISDar2 | IS4 | IS4Sa | Dechloromonas aromatica | 28 | 4.9 |
| ISFsp1 | ISL3 | Frankia sp. | 28 | 4.9 | |
| IS882 | Tn3 | Ralstonia eutropha | 28 | 4.9 | |
| ISAfe1 | IS110 | IS1111 | Acidithiobacillus ferroxidans | 28 | 4.9 |
| ISMlo2 | IS110 | IS1111 | Mesorhizobium loti | 28 | 4.9 |
| ISShsp1 | IS110 | IS1111 | Sphingomonas sp. | 28 | 4.9 |
| IS1137 | IS3 | IS51 | Mycobacterium smegmatis | 28 | 4.9 |
| IS1021 | IS5 | IS5 | Ralstonia solanacearum | 28 | 4.9 |
>ISGdi15
Length = 1602
Score = 34.2 bits (17), Expect = 0.079
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 139 gcgggcggcgatgtcgg 155
|||||||||||||||||
Sbjct: 351 gcgggcggcgatgtcgg 367
>ISMsm12
Length = 3256
Score = 32.2 bits (16), Expect = 0.31
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 116 ggcagcgaatccacgt 131
||||||||||||||||
Sbjct: 169 ggcagcgaatccacgt 184
>ISAar4
Length = 1304
Score = 32.2 bits (16), Expect = 0.31
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 80 tcgggcacgttcggaa 95
||||||||||||||||
Sbjct: 279 tcgggcacgttcggaa 264
>IS220
Length = 3257
Score = 32.2 bits (16), Expect = 0.31
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 116 ggcagcgaatccacgt 131
||||||||||||||||
Sbjct: 169 ggcagcgaatccacgt 184
>TnAs3
Length = 18735
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 153 cggtggcgaccagca 167
|||||||||||||||
Sbjct: 2781 cggtggcgaccagca 2767
>ISHel1
Length = 1563
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 125 tccacgtcgatgccg 139
|||||||||||||||
Sbjct: 830 tccacgtcgatgccg 816
>ISNpe27
Length = 1420
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 125 tccacgtcgatgccg 139
|||||||||||||||
Sbjct: 1103 tccacgtcgatgccg 1089
>TnAs2
Length = 8650
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 153 cggtggcgaccagca 167
|||||||||||||||
Sbjct: 2751 cggtggcgaccagca 2737
>ISPa34
Length = 1216
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 156 tggcgaccagcactt 170
|||||||||||||||
Sbjct: 994 tggcgaccagcactt 980
>ISAau2
Length = 2222
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 202 gcgggtgcgggcgtt 216
|||||||||||||||
Sbjct: 918 gcgggtgcgggcgtt 904
>ISRjo1
Length = 1967
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 133 gatgccgcgggcggc 147
|||||||||||||||
Sbjct: 26 gatgccgcgggcggc 12
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 35 tcggcgccggcacga 49
|||||||||||||||
Sbjct: 1018 tcggcgccggcacga 1004
>ISThsp7
Length = 1920
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 125 tccacgtcgatgccg 139
|||||||||||||||
Sbjct: 593 tccacgtcgatgccg 579
>ISAfe8
Length = 1472
Score = 30.2 bits (15), Expect = 1.2
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 122 gaatccacgtcgatgccgc 140
|||||| ||||||||||||
Sbjct: 354 gaatccccgtcgatgccgc 372
>ISBlma9
Length = 2606
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 205 ggtgcgggcgttttg 219
|||||||||||||||
Sbjct: 173 ggtgcgggcgttttg 187
>ISTth7
Length = 1029
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 200 gcgcgggtgcgggcg 214
|||||||||||||||
Sbjct: 797 gcgcgggtgcgggcg 811
>ISAzo9
Length = 1483
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 153 cggtggcgaccagca 167
|||||||||||||||
Sbjct: 642 cggtggcgaccagca 628
>ISNch1
Length = 1636
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 126 ccacgtcgatgccg 139
||||||||||||||
Sbjct: 902 ccacgtcgatgccg 889
>ISNje1
Length = 1597
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 126 ccacgtcgatgccg 139
||||||||||||||
Sbjct: 866 ccacgtcgatgccg 853
>ISHaru1
Length = 1488
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 125 tccacgtcgatgcc 138
||||||||||||||
Sbjct: 1142 tccacgtcgatgcc 1129
>ISHtu6
Length = 1516
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 126 ccacgtcgatgccg 139
||||||||||||||
Sbjct: 836 ccacgtcgatgccg 823
>TnShfr1
Length = 5131
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 58 gccgatgcggtgca 71
||||||||||||||
Sbjct: 3277 gccgatgcggtgca 3264
>ISPko3
Length = 1017
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 138 cgcgggcggcgatg 151
||||||||||||||
Sbjct: 694 cgcgggcggcgatg 681
>ISTco4
Length = 1577
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 159 cgaccagcacttgc 172
||||||||||||||
Sbjct: 374 cgaccagcacttgc 387
>ISMme1
Length = 1324
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 57 ggccgatgcggtgc 70
||||||||||||||
Sbjct: 485 ggccgatgcggtgc 472
>ISPa38
Length = 6455
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 58 gccgatgcggtgca 71
||||||||||||||
Sbjct: 4604 gccgatgcggtgca 4591
>ISPso3
Length = 1283
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 174 gcttgccgcgcttg 187
||||||||||||||
Sbjct: 903 gcttgccgcgcttg 890
>ISPmar3
Length = 1282
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 174 gcttgccgcgcttg 187
||||||||||||||
Sbjct: 903 gcttgccgcgcttg 890
>ISMno32
Length = 1538
Score = 28.2 bits (14), Expect = 4.9
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 129 cgtcgatgccgcgggcgg 146
||||||||||||| ||||
Sbjct: 774 cgtcgatgccgcgtgcgg 791
>ISMex12
Length = 1418
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 201 cgcgggtgcgggcg 214
||||||||||||||
Sbjct: 366 cgcgggtgcgggcg 353
>ISThsp11
Length = 1814
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 58 gccgatgcggtgca 71
||||||||||||||
Sbjct: 1777 gccgatgcggtgca 1790
>ISAzo22
Length = 1763
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 126 ccacgtcgatgccg 139
||||||||||||||
Sbjct: 1213 ccacgtcgatgccg 1200
>ISCARN22
Length = 2674
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 229 gccgtgcagggccg 242
||||||||||||||
Sbjct: 450 gccgtgcagggccg 437
>ISCARN18
Length = 1561
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 175 cttgccgcgcttga 188
||||||||||||||
Sbjct: 335 cttgccgcgcttga 322
>ISSpu18
Length = 1199
Score = 28.2 bits (14), Expect = 4.9
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 171 gcagcttgccgcgcttga 188
|||| |||||||||||||
Sbjct: 523 gcagattgccgcgcttga 540
>ISBj7_B
Length = 2865
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 38 gcgccggcacgacc 51
||||||||||||||
Sbjct: 233 gcgccggcacgacc 246
>ISCARN1
Length = 2232
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 126 ccacgtcgatgccg 139
||||||||||||||
Sbjct: 1481 ccacgtcgatgccg 1468
>ISAfe10
Length = 2232
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 126 ccacgtcgatgccg 139
||||||||||||||
Sbjct: 1481 ccacgtcgatgccg 1468
>ISAzca2
Length = 2458
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 58 gccgatgcggtgca 71
||||||||||||||
Sbjct: 1278 gccgatgcggtgca 1265
>ISNwi2
Length = 1750
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 164 agcacttgcagctt 177
||||||||||||||
Sbjct: 838 agcacttgcagctt 851
>ISDar2
Length = 1322
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 41 ccggcacgaccagt 54
||||||||||||||
Sbjct: 876 ccggcacgaccagt 889
>ISFsp1
Length = 1732
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 203 cgggtgcgggcgtt 216
||||||||||||||
Sbjct: 505 cgggtgcgggcgtt 518
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 32 ccttcggcgccggc 45
||||||||||||||
Sbjct: 1303 ccttcggcgccggc 1290
>IS882
Length = 3363
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 181 gcgcttgaactggt 194
||||||||||||||
Sbjct: 983 gcgcttgaactggt 996
>ISAfe1
Length = 1424
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 54 tgcggccgatgcgg 67
||||||||||||||
Sbjct: 397 tgcggccgatgcgg 410
>ISMlo2
Length = 1402
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 175 cttgccgcgcttga 188
||||||||||||||
Sbjct: 343 cttgccgcgcttga 330
>ISShsp1
Length = 1404
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 175 cttgccgcgcttga 188
||||||||||||||
Sbjct: 343 cttgccgcgcttga 330
>IS1137
Length = 1361
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 8 gggcagaccagcga 21
||||||||||||||
Sbjct: 246 gggcagaccagcga 259
>IS1021
Length = 1209
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 175 cttgccgcgcttga 188
||||||||||||||
Sbjct: 831 cttgccgcgcttga 818
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_271_length_250_cov_0.728324_ID_5712
(250 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISRop2 | ISAzo13 | Rhodococcus opacus | 34 | 0.079 | |
| ISNph23 | IS200/IS605 | IS1341 | Natronomonas pharaonis | 32 | 0.31 |
| ISSm4 | ISL3 | Serratia marcescens | 30 | 1.2 | |
| ISNha6 | IS5 | IS5 | Nitrobacter hamburgensis | 30 | 1.2 |
| ISAzo18 | IS3 | IS150 | Azoarcus sp. | 30 | 1.2 |
| ISAusp1 | IS1595 | ISNha5 | Aurantimonas sp. | 30 | 1.2 |
| ISC1225 | ISH3 | Sulfolobus solfataricus | 30 | 1.2 | |
| IS881 | IS5 | IS5 | Ralstonia eutropha | 30 | 1.2 |
| ISXc4 | Tn3 | - | Xanthomonas campestris | 30 | 1.2 |
| ISDra1 | IS4 | IS10 | Deinococcus radiodurans | 30 | 1.2 |
| IS1513 | IS30 | - | Corynebacterium striatum | 30 | 1.2 |
| IS1245 | IS256 | - | Mycobacterium avium | 30 | 1.2 |
| TnAs3 | Tn3 | Aeromonas salmonicida | 28 | 4.9 | |
| ISRsp13 | IS5 | Rhizhobium sp. | 28 | 4.9 | |
| ISAs20 | IS3 | IS3 | Aeromonas salmonicida | 28 | 4.9 |
| ISBibr1 | IS256 | IS1249 | Bifidobacterium breve | 28 | 4.9 |
| ISSgl1 | IS5 | IS903 | Sodalis glossinidius | 28 | 4.9 |
| ISRssp11 | IS5 | Roseovarius sp. | 28 | 4.9 | |
| ISPna3 | IS5 | IS5 | Polaromonas naphthalenivorans | 28 | 4.9 |
| ISCARN38 | IS5 | IS427 | Metagenomic data from CARNOULES | 28 | 4.9 |
| ISCARN18 | IS110 | IS1111 | Metagenomic data from CARNOULES | 28 | 4.9 |
| ISAfe2 | IS256 | Acidithiobacillus ferrooxidans | 28 | 4.9 | |
| ISBvu3 | IS66 | Bacteroides vulgatus | 28 | 4.9 | |
| ISXoo7 | IS5 | IS5 | Xanthomonas oryzae | 28 | 4.9 |
| ISPst3 | IS21 | Pseudomonas stutzeri | 28 | 4.9 | |
| ISSde5 | IS256 | Shewanella denitrificans | 28 | 4.9 | |
| ISSgr1 | IS110 | IS1111 | Streptomyces griseus | 28 | 4.9 |
| ISRaq1 | IS3 | IS407 | Rahnella aquatilis | 28 | 4.9 |
| ISAzvi10 | IS701 | Azotobacter vinelandii | 28 | 4.9 | |
| ISSpo4 | IS5 | IS903 | Silicibacter pomeroyi | 28 | 4.9 |
| ISPosp2 | IS701 | Polaromonas sp. | 28 | 4.9 | |
| ISMyma3 | IS3 | IS51 | Mycobacterium marinum | 28 | 4.9 |
| ISPpa3 | IS5 | IS903 | Paracoccus pantotrophus | 28 | 4.9 |
| ISPpa1 | IS256 | Paracoccus pantotrophus | 28 | 4.9 | |
| ISPa42 | Tn3 | Pseudomonas aeruginosa | 28 | 4.9 |
>ISRop2
Length = 2171
Score = 34.2 bits (17), Expect = 0.079
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 228 gccttgacctgctcgtt 244
|||||||||||||||||
Sbjct: 587 gccttgacctgctcgtt 571
>ISNph23
Length = 1615
Score = 32.2 bits (16), Expect = 0.31
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 191 ggcaccgtcttcgcct 206
||||||||||||||||
Sbjct: 1188 ggcaccgtcttcgcct 1173
>ISSm4
Length = 9109
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 156 gaagccttgatcttg 170
|||||||||||||||
Sbjct: 3751 gaagccttgatcttg 3737
>ISNha6
Length = 1547
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 91 gcgacatcaggcgca 105
|||||||||||||||
Sbjct: 852 gcgacatcaggcgca 866
>ISAzo18
Length = 1471
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 25 ttttccacggcaagc 39
|||||||||||||||
Sbjct: 1296 ttttccacggcaagc 1282
>ISAusp1
Length = 3418
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 139 cttccttgctcatcc 153
|||||||||||||||
Sbjct: 2464 cttccttgctcatcc 2450
>ISC1225
Length = 1225
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 141 tccttgctcatcccg 155
|||||||||||||||
Sbjct: 601 tccttgctcatcccg 587
>IS881
Length = 3033
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 226 tggccttgacctgct 240
|||||||||||||||
Sbjct: 1193 tggccttgacctgct 1179
>ISXc4
Length = 6938
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 25 ttttccacggcaagc 39
|||||||||||||||
Sbjct: 4525 ttttccacggcaagc 4539
>ISDra1
Length = 1207
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 145 tgctcatcccggaag 159
|||||||||||||||
Sbjct: 332 tgctcatcccggaag 318
>IS1513
Length = 1705
Score = 30.2 bits (15), Expect = 1.2
Identities = 21/23 (91%)
Strand = Plus / Plus
Query: 89 cggcgacatcaggcgcagcttct 111
|||||| ||||||||||| ||||
Sbjct: 1534 cggcgagatcaggcgcaggttct 1556
>IS1245
Length = 1414
Score = 30.2 bits (15), Expect = 1.2
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 187 gatcggcaccgtcttcgcc 205
|||| ||||||||||||||
Sbjct: 946 gatccgcaccgtcttcgcc 964
>TnAs3
Length = 18735
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 196 cgtcttcgccttcg 209
||||||||||||||
Sbjct: 11482 cgtcttcgccttcg 11469
>ISRsp13
Length = 1353
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 178 gctcctcgagatcg 191
||||||||||||||
Sbjct: 138 gctcctcgagatcg 125
>ISAs20
Length = 1674
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 103 gcagcttcttgagc 116
||||||||||||||
Sbjct: 125 gcagcttcttgagc 112
>ISBibr1
Length = 1622
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 105 agcttcttgagctc 118
||||||||||||||
Sbjct: 730 agcttcttgagctc 717
>ISSgl1
Length = 1053
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 200 ttcgccttcgccaa 213
||||||||||||||
Sbjct: 471 ttcgccttcgccaa 458
>ISRssp11
Length = 1356
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 178 gctcctcgagatcg 191
||||||||||||||
Sbjct: 140 gctcctcgagatcg 127
>ISPna3
Length = 1425
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 103 gcagcttcttgagc 116
||||||||||||||
Sbjct: 1380 gcagcttcttgagc 1367
>ISCARN38
Length = 1033
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 133 caagcgcttccttg 146
||||||||||||||
Sbjct: 362 caagcgcttccttg 375
>ISCARN18
Length = 1561
Score = 28.2 bits (14), Expect = 4.9
Identities = 20/22 (90%)
Strand = Plus / Plus
Query: 184 cgagatcggcaccgtcttcgcc 205
|||| ||||| |||||||||||
Sbjct: 659 cgagttcggcgccgtcttcgcc 680
>ISAfe2
Length = 1124
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 56 gtagttgcgcacaa 69
||||||||||||||
Sbjct: 982 gtagttgcgcacaa 969
>ISBvu3
Length = 2576
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 212 aagttctttctgga 225
||||||||||||||
Sbjct: 2249 aagttctttctgga 2236
>ISXoo7
Length = 1157
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 84 gacatcggcgacat 97
||||||||||||||
Sbjct: 668 gacatcggcgacat 655
>ISPst3
Length = 2606
Score = 28.2 bits (14), Expect = 4.9
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 98 caggcgcagcttcttgag 115
||||||||||| ||||||
Sbjct: 1646 caggcgcagctccttgag 1629
>ISSde5
Length = 1292
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 137 cgcttccttgctca 150
||||||||||||||
Sbjct: 909 cgcttccttgctca 896
>ISSgr1
Length = 1544
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 8 gtggatgcgcgagc 21
||||||||||||||
Sbjct: 204 gtggatgcgcgagc 217
>ISRaq1
Length = 1221
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 103 gcagcttcttgagc 116
||||||||||||||
Sbjct: 276 gcagcttcttgagc 263
>ISAzvi10
Length = 1431
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 218 tttctggatggcct 231
||||||||||||||
Sbjct: 186 tttctggatggcct 199
>ISSpo4
Length = 1092
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 172 gatcaagctcctcg 185
||||||||||||||
Sbjct: 438 gatcaagctcctcg 451
>ISPosp2
Length = 1484
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 89 cggcgacatcaggc 102
||||||||||||||
Sbjct: 171 cggcgacatcaggc 158
>ISMyma3
Length = 1364
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 183 tcgagatcggcacc 196
||||||||||||||
Sbjct: 1192 tcgagatcggcacc 1205
>ISPpa3
Length = 1054
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 186 agatcggcaccgtc 199
||||||||||||||
Sbjct: 630 agatcggcaccgtc 643
>ISPpa1
Length = 1376
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 226 tggccttgacctgc 239
||||||||||||||
Sbjct: 948 tggccttgacctgc 935
>ISPa42
Length = 16941
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 192 gcaccgtcttcgcc 205
||||||||||||||
Sbjct: 8886 gcaccgtcttcgcc 8873
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_272_length_250_cov_0.947977_ID_5714
(250 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISThio1 | ISKra4 | ISKra4 | Thiorhodovibrio sp. | 32 | 0.31 |
| ISDge14 | IS701 | Deinococcus geothermalis | 32 | 0.31 | |
| ISDge12 | IS701 | Deinococcus geothermalis | 32 | 0.31 | |
| ISAtu6 | IS66 | - | Agrobacterium tumefaciens | 30 | 1.2 |
| ISMdi8 | IS481 | Methylobacterium dichloromethanicum | 30 | 1.2 | |
| ISDet2 | IS3 | IS407 | Dehalococcoides ethenogenes | 30 | 1.2 |
| IS1131 | IS66 | - | Agrobacterium tumefaciens | 30 | 1.2 |
| ISPsy36 | IS1182 | Pseudomonas syringae | 28 | 4.9 | |
| ISHwa19 | IS200/IS605 | IS1341 | Haloquadratum walsbyi | 28 | 4.9 |
| ISHwa18 | IS200/IS605 | IS1341 | Haloquadratum walsbyi | 28 | 4.9 |
| ISNph23 | IS200/IS605 | IS1341 | Natronomonas pharaonis | 28 | 4.9 |
| ISMyo1 | IS256 | Mycobacterium yongonense | 28 | 4.9 | |
| ISNph15 | IS200/IS605 | IS1341 | Natronomonas pharaonis | 28 | 4.9 |
| ISRel16 | IS21 | Rhizobium etli | 28 | 4.9 | |
| ISXoo5 | IS5 | IS5 | Xanthomonas oryzae | 28 | 4.9 |
| ISMpo3 | IS1380 | Methylobacterium populi | 28 | 4.9 | |
| ISAcma49 | ISL3 | Acaryochloris marina | 28 | 4.9 | |
| ISMex42 | IS5 | IS427 | Methylobacterium extorquens | 28 | 4.9 |
| ISCARN105 | IS3 | IS3 | Metagenomic data from CARNOULES | 28 | 4.9 |
| ISLxc2 | IS481 | Leifsonia xyli | 28 | 4.9 | |
| ISRssp5 | IS5 | IS903 | Roseovarius sp. | 28 | 4.9 |
| ISPca2 | IS3 | IS51 | Pelobacter carbinolicus | 28 | 4.9 |
| ISMasp2 | IS4 | ISPepr1 | Magnetococcus sp. | 28 | 4.9 |
| ISMac7 | IS200/IS605 | Methanosarcina acetivorans | 28 | 4.9 | |
| ISGsu4 | IS110 | Geobacter sulfurreducens | 28 | 4.9 | |
| ISGsu5 | IS110 | Geobacter sulfurreducens | 28 | 4.9 | |
| ISBlo3 | IS3 | Bifidobacterium longum | 28 | 4.9 | |
| ISPsy6 | IS1182 | Pseudomonas syringae | 28 | 4.9 | |
| IS199 | IS3 | IS150 | Streptococcus mutans | 28 | 4.9 |
>ISThio1
Length = 1756
Score = 32.2 bits (16), Expect = 0.31
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 97 gacgctggccaagcgc 112
||||||||||||||||
Sbjct: 626 gacgctggccaagcgc 641
>ISDge14
Length = 1152
Score = 32.2 bits (16), Expect = 0.31
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 91 caccctgacgctggcc 106
||||||||||||||||
Sbjct: 758 caccctgacgctggcc 773
>ISDge12
Length = 1145
Score = 32.2 bits (16), Expect = 0.31
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 91 caccctgacgctggcc 106
||||||||||||||||
Sbjct: 751 caccctgacgctggcc 766
>ISAtu6
Length = 2798
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 3 tcgcctattactaca 17
|||||||||||||||
Sbjct: 1749 tcgcctattactaca 1763
>ISMdi8
Length = 1002
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 99 cgctggccaagcgct 113
|||||||||||||||
Sbjct: 139 cgctggccaagcgct 153
>ISDet2
Length = 1417
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 154 tctcggtggcgccag 168
|||||||||||||||
Sbjct: 809 tctcggtggcgccag 823
>IS1131
Length = 2773
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 3 tcgcctattactaca 17
|||||||||||||||
Sbjct: 1736 tcgcctattactaca 1750
>ISPsy36
Length = 1658
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 140 ctgcgcgccgacca 153
||||||||||||||
Sbjct: 1618 ctgcgcgccgacca 1631
>ISHwa19
Length = 1482
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 24 acgaccgctacgca 37
||||||||||||||
Sbjct: 888 acgaccgctacgca 901
>ISHwa18
Length = 1449
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 24 acgaccgctacgca 37
||||||||||||||
Sbjct: 855 acgaccgctacgca 868
>ISNph23
Length = 1615
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 128 gtcggtggcttcct 141
||||||||||||||
Sbjct: 733 gtcggtggcttcct 720
>ISMyo1
Length = 1472
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 139 cctgcgcgccgacc 152
||||||||||||||
Sbjct: 562 cctgcgcgccgacc 549
>ISNph15
Length = 1476
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 24 acgaccgctacgca 37
||||||||||||||
Sbjct: 880 acgaccgctacgca 893
>ISRel16
Length = 2597
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 80 ggatggcagctcac 93
||||||||||||||
Sbjct: 883 ggatggcagctcac 896
>ISXoo5
Length = 1607
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 142 gcgcgccgaccatc 155
||||||||||||||
Sbjct: 1106 gcgcgccgaccatc 1093
>ISMpo3
Length = 1617
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 139 cctgcgcgccgacc 152
||||||||||||||
Sbjct: 392 cctgcgcgccgacc 405
>ISAcma49
Length = 1588
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 57 ggaatgcaaaatca 70
||||||||||||||
Sbjct: 689 ggaatgcaaaatca 676
>ISMex42
Length = 841
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 103 ggccaagcgcttca 116
||||||||||||||
Sbjct: 428 ggccaagcgcttca 415
>ISCARN105
Length = 1661
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 123 tctgggtcggtggc 136
||||||||||||||
Sbjct: 842 tctgggtcggtggc 829
>ISLxc2
Length = 1113
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 184 gctggttcgccagc 197
||||||||||||||
Sbjct: 775 gctggttcgccagc 788
>ISRssp5
Length = 1047
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 190 tcgccagcaaacct 203
||||||||||||||
Sbjct: 198 tcgccagcaaacct 211
>ISPca2
Length = 1218
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 113 ttcaaaaaactctg 126
||||||||||||||
Sbjct: 930 ttcaaaaaactctg 917
>ISMasp2
Length = 1597
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 105 ccaagcgcttcaaa 118
||||||||||||||
Sbjct: 1034 ccaagcgcttcaaa 1047
>ISMac7
Length = 1711
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 165 ccagctttgaagac 178
||||||||||||||
Sbjct: 673 ccagctttgaagac 686
>ISGsu4
Length = 1640
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 51 cggcgtggaatgca 64
||||||||||||||
Sbjct: 261 cggcgtggaatgca 274
>ISGsu5
Length = 1400
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 51 cggcgtggaatgca 64
||||||||||||||
Sbjct: 263 cggcgtggaatgca 276
>ISBlo3
Length = 1480
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 47 cgtccggcgtggaa 60
||||||||||||||
Sbjct: 1301 cgtccggcgtggaa 1288
>ISPsy6
Length = 1603
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 60 atgcaaaatcaggc 73
||||||||||||||
Sbjct: 860 atgcaaaatcaggc 847
>IS199
Length = 1220
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 7 ctattactacaaag 20
||||||||||||||
Sbjct: 428 ctattactacaaag 441
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_273_length_250_cov_0.526012_ID_5716
(250 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISPlpa1 | IS1380 | Plesiocystis pacifica | 34 | 0.079 | |
| ISAzo14 | IS1634 | Azoarcus sp. | 34 | 0.079 | |
| ISRsp5 | IS5 | Rhizobium sp. | 30 | 1.2 | |
| ISMsm11 | IS1380 | Mycobacterium smegmatis | 30 | 1.2 | |
| IS219 | IS1380 | - | Mycobacterium fortuitum | 30 | 1.2 |
| ISAeca4 | IS3 | IS51 | Aeromonas caviae | 28 | 4.9 |
| ISAeme6 | IS3 | IS407 | Aeromonas media | 28 | 4.9 |
| ISHaar1 | IS200/IS605 | IS1341 | Halorubrum arcis | 28 | 4.9 |
| ISAlac1 | ISLre2 | Alicyclobacillus acidocaldarius | 28 | 4.9 | |
| ISMme1 | ISAzo13 | Mesorhizobium metallidurans | 28 | 4.9 | |
| ISStau9 | IS5 | IS427 | Stigmatella aurantiaca | 28 | 4.9 |
| ISAau5 | ISNCY | Arthrobacter aurescens | 28 | 4.9 | |
| ISMch4 | IS110 | IS1111 | Methylobacterium chloromethanicum | 28 | 4.9 |
| ISMex26 | ISL3 | Methylobacterium extorquens | 28 | 4.9 | |
| ISStma11 | ISL3 | Stenotrophomonas maltophilia | 28 | 4.9 | |
| ISThsp9 | Tn3 | Thiomonas sp. | 28 | 4.9 | |
| ISAli8 | IS110 | Azospirillum lipoferum | 28 | 4.9 | |
| ISSsp5 | IS21 | Sphingomonas sp. | 28 | 4.9 | |
| IS881 | IS5 | IS5 | Ralstonia eutropha | 28 | 4.9 |
| ISSp1 | IS1380 | - | Sphingomonas paucimobilis | 28 | 4.9 |
>ISPlpa1
Length = 1849
Score = 34.2 bits (17), Expect = 0.079
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 80 tcgtcgatcacatcttc 96
|||||||||||||||||
Sbjct: 1321 tcgtcgatcacatcttc 1305
>ISAzo14
Length = 1925
Score = 34.2 bits (17), Expect = 0.079
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 209 cgcaccagcagttgctg 225
|||||||||||||||||
Sbjct: 603 cgcaccagcagttgctg 619
>ISRsp5
Length = 1320
Score = 30.2 bits (15), Expect = 1.2
Identities = 22/23 (95%), Gaps = 1/23 (4%)
Strand = Plus / Minus
Query: 190 gaagcgttacaccagcgcgcgca 212
|||||||| ||||||||||||||
Sbjct: 186 gaagcgtt-caccagcgcgcgca 165
>ISMsm11
Length = 1658
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 209 cgcaccagcagttgc 223
|||||||||||||||
Sbjct: 814 cgcaccagcagttgc 800
>IS219
Length = 1654
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 209 cgcaccagcagttgc 223
|||||||||||||||
Sbjct: 812 cgcaccagcagttgc 798
>ISAeca4
Length = 1235
Score = 28.2 bits (14), Expect = 4.9
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 98 aaatcctgccagacatag 115
|||||||||||| |||||
Sbjct: 958 aaatcctgccagtcatag 941
>ISAeme6
Length = 1198
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 79 atcgtcgatcacat 92
||||||||||||||
Sbjct: 766 atcgtcgatcacat 753
>ISHaar1
Length = 1590
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 38 gcgaaccactcgct 51
||||||||||||||
Sbjct: 807 gcgaaccactcgct 794
>ISAlac1
Length = 1608
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 184 ctcccagaagcgtt 197
||||||||||||||
Sbjct: 865 ctcccagaagcgtt 852
>ISMme1
Length = 1324
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 78 tatcgtcgatcaca 91
||||||||||||||
Sbjct: 101 tatcgtcgatcaca 88
>ISStau9
Length = 899
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 150 cccagcgcaccagc 163
||||||||||||||
Sbjct: 815 cccagcgcaccagc 802
>ISAau5
Length = 3989
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 101 tcctgccagacata 114
||||||||||||||
Sbjct: 2228 tcctgccagacata 2215
>ISMch4
Length = 1631
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 229 caggctcatgcggg 242
||||||||||||||
Sbjct: 47 caggctcatgcggg 60
>ISMex26
Length = 1676
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 80 tcgtcgatcacatc 93
||||||||||||||
Sbjct: 126 tcgtcgatcacatc 139
>ISStma11
Length = 4621
Score = 28.2 bits (14), Expect = 4.9
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 120 gcagcaggaaccggtcgt 137
||||||||||||| ||||
Sbjct: 927 gcagcaggaaccgctcgt 910
>ISThsp9
Length = 6215
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 218 agttgctgggtcag 231
||||||||||||||
Sbjct: 829 agttgctgggtcag 816
>ISAli8
Length = 1151
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 1 gtcgccgatccggg 14
||||||||||||||
Sbjct: 259 gtcgccgatccggg 246
>ISSsp5
Length = 2501
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 98 aaatcctgccagac 111
||||||||||||||
Sbjct: 710 aaatcctgccagac 723
>IS881
Length = 3033
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 152 cagcgcaccagccc 165
||||||||||||||
Sbjct: 1763 cagcgcaccagccc 1776
>ISSp1
Length = 1646
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 164 cctggcggcttgta 177
||||||||||||||
Sbjct: 275 cctggcggcttgta 288
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_274_length_249_cov_0.848837_ID_5718
(249 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISVsp3 | IS66 | Verrucomicrobium spinosum | 30 | 1.2 | |
| ISMmy1 | IS1634 | - | Mycoplasma mycoides | 30 | 1.2 |
| IS1413 | IS256 | - | Burkholderia cepacia | 30 | 1.2 |
| ISHwa10 | IS66 | ISBst12 | Haloquadratum walsbyi | 28 | 4.9 |
| ISCysp19 | IS5 | ISL2 | Cyanothece sp. | 28 | 4.9 |
| ISDre3 | IS1380 | Desulfotomaculum reducens | 28 | 4.9 | |
| ISMhu2 | IS1182 | Methanospirillum hungatei | 28 | 4.9 | |
| ISVsa19 | Tn3 | Aliivibrio salmonicida | 28 | 4.9 | |
| ISCbe3 | IS21 | Caldicellulosiruptor bescii | 28 | 4.9 | |
| ISMac22 | IS5 | IS5 | Methanosarcina acetivorans | 28 | 4.9 |
| ISCbt2 | IS200/IS605 | Clostridium botulinum | 28 | 4.9 | |
| IS1296 | IS3 | IS150 | Mycoplasma mycoides | 28 | 4.9 |
>ISVsp3
Length = 2446
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 15 aaccagttcttcttg 29
|||||||||||||||
Sbjct: 2215 aaccagttcttcttg 2201
>ISMmy1
Length = 1670
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 67 gtaaaaacaacatca 81
|||||||||||||||
Sbjct: 285 gtaaaaacaacatca 299
>IS1413
Length = 1429
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 187 ttcgtcacggggcgc 201
|||||||||||||||
Sbjct: 185 ttcgtcacggggcgc 199
>ISHwa10
Length = 1598
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 146 gggcgcatatttta 159
||||||||||||||
Sbjct: 1082 gggcgcatatttta 1095
>ISCysp19
Length = 1214
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 16 accagttcttcttg 29
||||||||||||||
Sbjct: 524 accagttcttcttg 511
>ISDre3
Length = 1834
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 154 attttagcaaaaaa 167
||||||||||||||
Sbjct: 71 attttagcaaaaaa 84
>ISMhu2
Length = 1760
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 21 ttcttcttgttttt 34
||||||||||||||
Sbjct: 772 ttcttcttgttttt 759
>ISVsa19
Length = 3255
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 73 acaacatcattatg 86
||||||||||||||
Sbjct: 2494 acaacatcattatg 2481
>ISCbe3
Length = 2148
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 150 gcatattttagcaa 163
||||||||||||||
Sbjct: 2056 gcatattttagcaa 2069
>ISMac22
Length = 1156
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 21 ttcttcttgttttt 34
||||||||||||||
Sbjct: 571 ttcttcttgttttt 558
>ISCbt2
Length = 2223
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 205 ttgctacaaaagta 218
||||||||||||||
Sbjct: 432 ttgctacaaaagta 419
>IS1296
Length = 1485
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 163 aaaaaccctaataa 176
||||||||||||||
Sbjct: 417 aaaaaccctaataa 430
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_275_length_249_cov_0.843023_ID_5720
(249 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISKrh1 | IS481 | Kocuria rhizophila | 34 | 0.079 | |
| ISPpu5 | IS110 | IS1111 | Pseudomonas putida | 32 | 0.31 |
| ISRjo4 | IS256 | Rhodococcus jostii | 30 | 1.2 | |
| ISMno13 | IS66 | Methylobacterium nodulans | 30 | 1.2 | |
| ISCARN100 | IS1595 | ISSod11 | Metagenomic data from CARNOULES | 30 | 1.2 |
| ISCARN68 | IS256 | Metagenomic data from CARNOULES | 30 | 1.2 | |
| ISSse2 | IS3 | IS51 | Shewanela sediminis | 30 | 1.2 |
| ISAma4 | IS66 | ISBst12 | Alteromonas macleodii | 30 | 1.2 |
| ISAau4 | Tn3 | Arthrobacter aurescens | 30 | 1.2 | |
| ISMca6 | ISAs1 | Methylococcus capsulatus | 30 | 1.2 | |
| ISPa1 | ISNCY | - | Pseudomonas aeruginosa PA103 | 30 | 1.2 |
| IS2606 | IS256 | - | Mycobacterium ulcerans | 30 | 1.2 |
| ISRtr5 | IS66 | Rhizobium tropici | 28 | 4.9 | |
| ISUnCu17 | IS1182 | Uncultured bacteria | 28 | 4.9 | |
| ISMich2 | ISKra4 | ISMich2 | Microcoleus chthonoplastes | 28 | 4.9 |
| ISEc32 | IS110 | Escherichia coli | 28 | 4.9 | |
| ISAnsp6 | IS1182 | Anaeromyxobacter sp. | 28 | 4.9 | |
| ISThsp18 | IS1182 | Thiomonas sp. | 28 | 4.9 | |
| ISAli20 | Tn3 | Azospirillum lipoferum | 28 | 4.9 | |
| ISDge6 | IS5 | ISL2 | Deinococcus geothermalis | 28 | 4.9 |
| ISHar2 | IS3 | IS3 | Herminiimonas arsenicoxydans | 28 | 4.9 |
| ISBmu6 | IS3 | IS150 | Burkholderia multivorans | 28 | 4.9 |
| ISGur10 | IS3 | IS3 | Geobacter uraniumreducens | 28 | 4.9 |
| ISBam1 | IS3 | IS150 | Burkholderia ambifaria | 28 | 4.9 |
| ISBcen16 | IS3 | IS150 | Burkholderia cenocepacia | 28 | 4.9 |
| ISAzo25 | IS1182 | Azoarcus sp. | 28 | 4.9 | |
| ISLxx2 | IS110 | Leifsonia xyli | 28 | 4.9 |
>ISKrh1
Length = 2854
Score = 34.2 bits (17), Expect = 0.079
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 126 cgcacttcgttgtagtg 142
|||||||||||||||||
Sbjct: 2042 cgcacttcgttgtagtg 2026
>ISPpu5
Length = 1342
Score = 32.2 bits (16), Expect = 0.31
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 218 ccagcagatgatgaag 233
||||||||||||||||
Sbjct: 165 ccagcagatgatgaag 180
>ISRjo4
Length = 1458
Score = 30.2 bits (15), Expect = 1.2
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 230 gaaggcggtgaggaagatc 248
||||||||||| |||||||
Sbjct: 1068 gaaggcggtgaagaagatc 1086
>ISMno13
Length = 2459
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 114 gccatgccggcgcgc 128
|||||||||||||||
Sbjct: 241 gccatgccggcgcgc 227
>ISCARN100
Length = 1111
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 115 ccatgccggcgcgca 129
|||||||||||||||
Sbjct: 472 ccatgccggcgcgca 458
>ISCARN68
Length = 1419
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 226 tgatgaaggcggtga 240
|||||||||||||||
Sbjct: 932 tgatgaaggcggtga 946
>ISSse2
Length = 1234
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 14 ggtggtggcgatgtt 28
|||||||||||||||
Sbjct: 653 ggtggtggcgatgtt 667
>ISAma4
Length = 1529
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 104 catcgcgcccgccat 118
|||||||||||||||
Sbjct: 231 catcgcgcccgccat 245
>ISAau4
Length = 3898
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 183 gccgggatcggcgga 197
|||||||||||||||
Sbjct: 2313 gccgggatcggcgga 2327
>ISMca6
Length = 1180
Score = 30.2 bits (15), Expect = 1.2
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 220 agcagatgatgaaggcggt 238
|||| ||||||||||||||
Sbjct: 990 agcacatgatgaaggcggt 972
>ISPa1
Length = 1035
Score = 30.2 bits (15), Expect = 1.2
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 3 cacatttgcagggtggtgg 21
||||| |||||||||||||
Sbjct: 113 cacatgtgcagggtggtgg 131
>IS2606
Length = 1404
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 29 gttttcgagcgggtt 43
|||||||||||||||
Sbjct: 357 gttttcgagcgggtt 343
>ISRtr5
Length = 2577
Score = 28.2 bits (14), Expect = 4.9
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 110 gcccgccatgccggcgcg 127
||||| ||||||||||||
Sbjct: 370 gcccgacatgccggcgcg 387
>ISUnCu17
Length = 1481
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 52 ccatgaccttggtg 65
||||||||||||||
Sbjct: 1230 ccatgaccttggtg 1217
>ISMich2
Length = 1805
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 214 cgccccagcagatg 227
||||||||||||||
Sbjct: 1448 cgccccagcagatg 1461
>ISEc32
Length = 1180
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 14 ggtggtggcgatgt 27
||||||||||||||
Sbjct: 240 ggtggtggcgatgt 227
>ISAnsp6
Length = 1515
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 230 gaaggcggtgagga 243
||||||||||||||
Sbjct: 567 gaaggcggtgagga 580
>ISThsp18
Length = 1330
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 101 gagcatcgcgcccg 114
||||||||||||||
Sbjct: 254 gagcatcgcgcccg 267
>ISAli20
Length = 3828
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 103 gcatcgcgcccgcc 116
||||||||||||||
Sbjct: 286 gcatcgcgcccgcc 273
>ISDge6
Length = 1117
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 145 tgcggaagaactct 158
||||||||||||||
Sbjct: 962 tgcggaagaactct 949
>ISHar2
Length = 1249
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 161 catctggtcagccg 174
||||||||||||||
Sbjct: 763 catctggtcagccg 776
>ISBmu6
Length = 1445
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 225 atgatgaaggcggt 238
||||||||||||||
Sbjct: 350 atgatgaaggcggt 363
>ISGur10
Length = 1593
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 37 gcgggttgatccac 50
||||||||||||||
Sbjct: 1537 gcgggttgatccac 1524
>ISBam1
Length = 1448
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 225 atgatgaaggcggt 238
||||||||||||||
Sbjct: 350 atgatgaaggcggt 363
>ISBcen16
Length = 1445
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 225 atgatgaaggcggt 238
||||||||||||||
Sbjct: 350 atgatgaaggcggt 363
>ISAzo25
Length = 1388
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 52 ccatgaccttggtg 65
||||||||||||||
Sbjct: 1271 ccatgaccttggtg 1258
>ISLxx2
Length = 1427
Score = 28.2 bits (14), Expect = 4.9
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 93 acgccgaagagcatcgcg 110
|||||| |||||||||||
Sbjct: 1124 acgccgcagagcatcgcg 1107
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_276_length_249_cov_1.69767_ID_5722
(249 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISBf10 | IS66 | Bacteroides fragilis | 32 | 0.31 | |
| ISDpr1 | IS4 | IS4Sa | delta proteobacterium | 32 | 0.31 |
| ISMyma8 | IS3 | IS407 | Mycobacterium marinum | 30 | 1.2 |
| ISStu2 | ISAzo13 | Streptomyces turgidiscabies | 30 | 1.2 | |
| ISStr1 | IS1380 | Salinispora tropica | 30 | 1.2 | |
| ISSsp2 | IS3 | IS150 | Sphingomonas sp. | 30 | 1.2 |
| ISMav1 | IS21 | - | Mycobacterium avium | 30 | 1.2 |
| IS868 | IS3 | IS51 | Agrobacterium tumefaciens | 30 | 1.2 |
| IS1612 | IS21 | - | Mycobacterium avium | 30 | 1.2 |
| TnXo19 | Tn3 | Xanthomonas oryzae | 28 | 4.9 | |
| ISMno29 | IS110 | Methylobacterium nodulans | 28 | 4.9 | |
| ISPa56 | IS3 | IS2 | Pseudomonas aeruginosa | 28 | 4.9 |
| ISSlgl1 | IS256 | IS1249 | Slackia heliotrinireducens | 28 | 4.9 |
| ISPve1 | IS21 | Paracoccus versutus | 28 | 4.9 | |
| ISAzs20 | IS66 | Azospirillum sp. | 28 | 4.9 | |
| ISRel24 | IS66 | Rhizobium etli | 28 | 4.9 | |
| ISMno10 | IS1182 | Methylobacterium nodulans | 28 | 4.9 | |
| ISMno30 | ISL3 | Methylobacterium nodulans | 28 | 4.9 | |
| ISBf3 | IS1182 | Bacteroides fragilis YCH46 plasmid pBFY46 | 28 | 4.9 | |
| ISRce1 | ISAs1 | Rhodospirillum centenum | 28 | 4.9 | |
| ISThsp10 | IS21 | Thiomonas sp. | 28 | 4.9 | |
| ISAzo10 | IS3 | IS3 | Azoarcus sp. | 28 | 4.9 |
| ISMmg4 | IS701 | Magnetospirillum magneticum | 28 | 4.9 | |
| ISBcen14 | IS66 | Burkholderia cenocepacia | 28 | 4.9 | |
| ISPa10 | IS5 | IS5 | Pseudomonas aeruginosa | 28 | 4.9 |
| ISRm2 | IS66 | Sinorhizobium meliloti | 28 | 4.9 | |
| ISMt2 | IS21 | - | Mycobacterium tuberculosis | 28 | 4.9 |
| ISAzvi1 | IS1595 | ISPna2 | Azotobacter vinelandii | 28 | 4.9 |
| IS900 | IS110 | - | Mycobacterium paratuberculosis | 28 | 4.9 |
| IS1372 | IS3 | IS51 | Streptomyces lividans | 28 | 4.9 |
>ISBf10
Length = 2939
Score = 32.2 bits (16), Expect = 0.31
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 186 accagtcgttgaccgt 201
||||||||||||||||
Sbjct: 1638 accagtcgttgaccgt 1623
>ISDpr1
Length = 1325
Score = 32.2 bits (16), Expect = 0.31
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 226 gtcgttgccggcaaag 241
||||||||||||||||
Sbjct: 996 gtcgttgccggcaaag 981
>ISMyma8
Length = 1247
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 184 gcaccagtcgttgac 198
|||||||||||||||
Sbjct: 960 gcaccagtcgttgac 946
>ISStu2
Length = 1760
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 196 gaccgtgacggccag 210
|||||||||||||||
Sbjct: 990 gaccgtgacggccag 976
>ISStr1
Length = 1664
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 170 ccggtcgcgtcggcg 184
|||||||||||||||
Sbjct: 227 ccggtcgcgtcggcg 213
>ISSsp2
Length = 1511
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 80 gccggccaggcggcg 94
|||||||||||||||
Sbjct: 316 gccggccaggcggcg 302
>ISMav1
Length = 2536
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 128 tagccggtgagcagg 142
|||||||||||||||
Sbjct: 920 tagccggtgagcagg 934
>IS868
Length = 1321
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 92 gcgtgttcggggtcg 106
|||||||||||||||
Sbjct: 405 gcgtgttcggggtcg 419
>IS1612
Length = 2532
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 128 tagccggtgagcagg 142
|||||||||||||||
Sbjct: 919 tagccggtgagcagg 933
>TnXo19
Length = 18767
Score = 28.2 bits (14), Expect = 4.9
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 96 gttcggggtcggtcagcg 113
|||||| |||||||||||
Sbjct: 1619 gttcggcgtcggtcagcg 1602
>ISMno29
Length = 1192
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 36 cggcccgcgacagc 49
||||||||||||||
Sbjct: 606 cggcccgcgacagc 619
>ISPa56
Length = 1359
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 196 gaccgtgacggcca 209
||||||||||||||
Sbjct: 843 gaccgtgacggcca 856
>ISSlgl1
Length = 1341
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 183 cgcaccagtcgttg 196
||||||||||||||
Sbjct: 837 cgcaccagtcgttg 824
>ISPve1
Length = 2503
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 204 cggccagatcgaag 217
||||||||||||||
Sbjct: 1411 cggccagatcgaag 1398
>ISAzs20
Length = 2811
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 14 tcgcgcggcaggtg 27
||||||||||||||
Sbjct: 1263 tcgcgcggcaggtg 1250
>ISRel24
Length = 2837
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 14 tcgcgcggcaggtg 27
||||||||||||||
Sbjct: 1235 tcgcgcggcaggtg 1222
>ISMno10
Length = 1749
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 155 accgggtcgagctg 168
||||||||||||||
Sbjct: 540 accgggtcgagctg 553
>ISMno30
Length = 1773
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 202 gacggccagatcga 215
||||||||||||||
Sbjct: 277 gacggccagatcga 264
>ISBf3
Length = 1845
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 150 tgcggaccgggtcg 163
||||||||||||||
Sbjct: 214 tgcggaccgggtcg 201
>ISRce1
Length = 1267
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 88 ggcggcgtgttcgg 101
||||||||||||||
Sbjct: 1006 ggcggcgtgttcgg 993
>ISThsp10
Length = 2501
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 90 cggcgtgttcgggg 103
||||||||||||||
Sbjct: 2257 cggcgtgttcgggg 2270
>ISAzo10
Length = 1669
Score = 28.2 bits (14), Expect = 4.9
Identities = 20/22 (90%)
Strand = Plus / Minus
Query: 92 gcgtgttcggggtcggtcagcg 113
|||| ||||||||||| |||||
Sbjct: 385 gcgtcttcggggtcggccagcg 364
>ISMmg4
Length = 1507
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 180 cggcgcaccagtcg 193
||||||||||||||
Sbjct: 261 cggcgcaccagtcg 274
>ISBcen14
Length = 2516
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 209 agatcgaagagcag 222
||||||||||||||
Sbjct: 1980 agatcgaagagcag 1993
>ISPa10
Length = 1193
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 69 cgcgcagcatggcc 82
||||||||||||||
Sbjct: 252 cgcgcagcatggcc 239
>ISRm2
Length = 2593
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 14 tcgcgcggcaggtg 27
||||||||||||||
Sbjct: 1270 tcgcgcggcaggtg 1257
>ISMt2
Length = 2645
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 88 ggcggcgtgttcgg 101
||||||||||||||
Sbjct: 1637 ggcggcgtgttcgg 1624
>ISAzvi1
Length = 1026
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 47 agccagaagcgcag 60
||||||||||||||
Sbjct: 797 agccagaagcgcag 810
>IS900
Length = 1451
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 69 cgcgcagcatggcc 82
||||||||||||||
Sbjct: 1391 cgcgcagcatggcc 1378
>IS1372
Length = 1304
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 138 gcagggcgcgggtg 151
||||||||||||||
Sbjct: 585 gcagggcgcgggtg 572
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_277_length_249_cov_0.848837_ID_5724
(249 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISGlo6 | IS3 | IS150 | Geobacter lovleyi | 32 | 0.31 |
| ISAde1 | IS66 | Anaeromyxobacter dehalogenans | 32 | 0.31 | |
| ISSri1 | ISKra4 | ISKra4 | Streptomyces rimosus | 30 | 1.2 |
| ISDsh5 | IS5 | IS903 | Dinoroseobacter shibae | 30 | 1.2 |
| ISStma11 | ISL3 | Stenotrophomonas maltophilia | 30 | 1.2 | |
| ISMex4 | IS1380 | Methylobacterium extorquens | 30 | 1.2 | |
| ISDsh4 | IS5 | IS903 | Dinoroseobacter shibae | 30 | 1.2 |
| ISBlma7 | ISAs1 | Blastopirellula marina | 30 | 1.2 | |
| ISPosp1 | IS4 | IS4 | Polaromonas sp. | 30 | 1.2 |
| ISHla11 | ISH3 | Halorubrum lacusprofundi | 28 | 4.9 | |
| ISSen4 | IS3 | IS407 | Salmonella enterica | 28 | 4.9 |
| ISPam1 | IS5 | IS903 | Paracoccus aminophilus | 28 | 4.9 |
| ISScl2 | ISAzo13 | Streptomyces clavuligerus | 28 | 4.9 | |
| ISRhru3 | IS110 | IS1111 | Rhodospirillum rubrum | 28 | 4.9 |
| ISMno35 | IS6 | Methylobacterium nodulans | 28 | 4.9 | |
| ISMtsp8 | IS21 | Methylobacterium sp. | 28 | 4.9 | |
| ISAar45 | IS3 | IS3 | Arthrobacter arilaitensis | 28 | 4.9 |
| ISMsm11 | IS1380 | Mycobacterium smegmatis | 28 | 4.9 | |
| ISNha3 | IS1380 | Nitrobacter hamburgensis | 28 | 4.9 | |
| ISMesp2 | IS1380 | Mesorhizobium sp. | 28 | 4.9 | |
| ISCARN55 | IS256 | Metagenomic data from CARNOULES | 28 | 4.9 | |
| ISPa29 | IS110 | IS1111 | Pseudomonas aeruginosa | 28 | 4.9 |
| ISYen3 | IS3 | IS407 | Yersinia enterocolitica | 28 | 4.9 |
| ISShsp3 | IS3 | IS3 | Sphingomonas sp. | 28 | 4.9 |
| ISRle3 | IS66 | Rhizobium leguminosarum | 28 | 4.9 | |
| ISBcen18 | IS256 | Burkholderia cenocepacia | 28 | 4.9 | |
| ISBlo7 | IS30 | Bifidobacterium longum | 28 | 4.9 | |
| ISRso6 | IS21 | - | Ralstonia solanacearum | 28 | 4.9 |
| ISRl1 | IS66 | - | Rhizobium leguminosarum | 28 | 4.9 |
| ISBj1 | IS1380 | - | Bradyrhizobium japonicum | 28 | 4.9 |
| IS219 | IS1380 | - | Mycobacterium fortuitum | 28 | 4.9 |
| IS1222 | IS3 | IS407 | Enterobacter agglomerans | 28 | 4.9 |
>ISGlo6
Length = 1269
Score = 32.2 bits (16), Expect = 0.31
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 96 aggccaagatagacttggcg 115
|||||||||||| |||||||
Sbjct: 102 aggccaagatagccttggcg 121
>ISAde1
Length = 2957
Score = 32.2 bits (16), Expect = 0.31
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 61 gccgtcggcctgagcg 76
||||||||||||||||
Sbjct: 2330 gccgtcggcctgagcg 2345
>ISSri1
Length = 2269
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 83 gaagcgcatgtcgag 97
|||||||||||||||
Sbjct: 820 gaagcgcatgtcgag 834
>ISDsh5
Length = 1049
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 91 tgtcgaggccaagat 105
|||||||||||||||
Sbjct: 846 tgtcgaggccaagat 860
>ISStma11
Length = 4621
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 182 cgggccgagattgag 196
|||||||||||||||
Sbjct: 3138 cgggccgagattgag 3124
>ISMex4
Length = 1615
Score = 30.2 bits (15), Expect = 1.2
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 85 agcgcatgtcgaggccaag 103
|||| ||||||||||||||
Sbjct: 1080 agcggatgtcgaggccaag 1062
>ISDsh4
Length = 1049
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 91 tgtcgaggccaagat 105
|||||||||||||||
Sbjct: 846 tgtcgaggccaagat 860
>ISBlma7
Length = 1279
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 83 gaagcgcatgtcgag 97
|||||||||||||||
Sbjct: 278 gaagcgcatgtcgag 292
>ISPosp1
Length = 1529
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 41 ggcgcctgggtgctg 55
|||||||||||||||
Sbjct: 637 ggcgcctgggtgctg 623
>ISHla11
Length = 1376
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 232 gccggatcggccgg 245
||||||||||||||
Sbjct: 348 gccggatcggccgg 361
>ISSen4
Length = 1221
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 146 cagttgctgcgccg 159
||||||||||||||
Sbjct: 536 cagttgctgcgccg 549
>ISPam1
Length = 1050
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 92 gtcgaggccaagat 105
||||||||||||||
Sbjct: 847 gtcgaggccaagat 860
>ISScl2
Length = 1819
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 47 tgggtgctgacccg 60
||||||||||||||
Sbjct: 733 tgggtgctgacccg 720
>ISRhru3
Length = 1382
Score = 28.2 bits (14), Expect = 4.9
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 231 agccggatcggccgggaa 248
||||||||||||| ||||
Sbjct: 265 agccggatcggcctggaa 282
>ISMno35
Length = 894
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 88 gcatgtcgaggcca 101
||||||||||||||
Sbjct: 150 gcatgtcgaggcca 163
>ISMtsp8
Length = 2371
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 177 tggcgcgggccgag 190
||||||||||||||
Sbjct: 1879 tggcgcgggccgag 1892
>ISAar45
Length = 1280
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 43 cgcctgggtgctga 56
||||||||||||||
Sbjct: 462 cgcctgggtgctga 449
>ISMsm11
Length = 1658
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 35 gtggtgggcgcctg 48
||||||||||||||
Sbjct: 843 gtggtgggcgcctg 856
>ISNha3
Length = 1631
Score = 28.2 bits (14), Expect = 4.9
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 83 gaagcgcatgtcgaggcc 100
|||||| |||||||||||
Sbjct: 1082 gaagcggatgtcgaggcc 1065
>ISMesp2
Length = 1618
Score = 28.2 bits (14), Expect = 4.9
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 83 gaagcgcatgtcgaggcc 100
|||||| |||||||||||
Sbjct: 1082 gaagcggatgtcgaggcc 1065
>ISCARN55
Length = 1364
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 152 ctgcgccgggttgg 165
||||||||||||||
Sbjct: 517 ctgcgccgggttgg 530
>ISPa29
Length = 1534
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 42 gcgcctgggtgctg 55
||||||||||||||
Sbjct: 754 gcgcctgggtgctg 741
>ISYen3
Length = 1140
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 146 cagttgctgcgccg 159
||||||||||||||
Sbjct: 536 cagttgctgcgccg 549
>ISShsp3
Length = 1229
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 155 cgccgggttggcca 168
||||||||||||||
Sbjct: 1080 cgccgggttggcca 1067
>ISRle3
Length = 2500
Score = 28.2 bits (14), Expect = 4.9
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 180 cgcgggccgagattgagc 197
||||| ||||||||||||
Sbjct: 890 cgcggcccgagattgagc 907
>ISBcen18
Length = 1372
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 60 ggccgtcggcctga 73
||||||||||||||
Sbjct: 695 ggccgtcggcctga 682
>ISBlo7
Length = 1272
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 42 gcgcctgggtgctg 55
||||||||||||||
Sbjct: 398 gcgcctgggtgctg 411
>ISRso6
Length = 2064
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 177 tggcgcgggccgag 190
||||||||||||||
Sbjct: 1296 tggcgcgggccgag 1309
>ISRl1
Length = 2495
Score = 28.2 bits (14), Expect = 4.9
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 180 cgcgggccgagattgagc 197
||||| ||||||||||||
Sbjct: 886 cgcggcccgagattgagc 903
>ISBj1
Length = 2071
Score = 28.2 bits (14), Expect = 4.9
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 83 gaagcgcatgtcgaggcc 100
|||||| |||||||||||
Sbjct: 1412 gaagcggatgtcgaggcc 1395
>IS219
Length = 1654
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 35 gtggtgggcgcctg 48
||||||||||||||
Sbjct: 841 gtggtgggcgcctg 854
>IS1222
Length = 1221
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 146 cagttgctgcgccg 159
||||||||||||||
Sbjct: 536 cagttgctgcgccg 549
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_278_length_249_cov_0.825581_ID_5726
(249 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISMmg2 | IS110 | IS1111 | Magnetospirillum magnetotacticum | 36 | 0.020 |
| ISMra3 | IS256 | Methylobacterium radiotolerans | 32 | 0.31 | |
| ISRhba1 | IS1595 | ISNwi1 | Rhodobacterales bacterium | 32 | 0.31 |
| ISRssp12 | IS1182 | Roseovarius sp. | 30 | 1.2 | |
| ISPfr3 | ISL3 | Propionibacterium freudenreichii | 30 | 1.2 | |
| ISPfr2 | ISL3 | Propionibacterium freudenreichii | 30 | 1.2 | |
| ISAzo11 | IS5 | IS5 | Azoarcus sp. | 30 | 1.2 |
| ISMyca1 | IS1634 | Mycobacterium canettii | 30 | 1.2 | |
| ISBlo8 | IS256 | Bifidobacterium longum | 30 | 1.2 | |
| ISPa42 | Tn3 | Pseudomonas aeruginosa | 30 | 1.2 | |
| ISH8E | IS4 | ISH8 | Halobacterium sp. | 30 | 1.2 |
| ISPa43 | Tn3 | Pseudomonas aeruginosa | 28 | 4.9 | |
| ISRbac1 | IS1182 | Rhodobacteraceae bacterium | 28 | 4.9 | |
| ISAcp1 | IS5 | IS5 | Acidobacterium capsulatum | 28 | 4.9 |
| ISArsp6 | Tn3 | Arthrobacter sp. | 28 | 4.9 | |
| ISPlpa1 | IS1380 | Plesiocystis pacifica | 28 | 4.9 | |
| ISMex24 | ISL3 | Methylobacterium extorquens | 28 | 4.9 | |
| ISMex22 | Tn3 | Methylobacterium extorquens | 28 | 4.9 | |
| ISThsp5 | IS21 | Thiomonas sp. | 28 | 4.9 | |
| ISCARN22 | IS66 | Metagenomic data from CARNOULES | 28 | 4.9 | |
| ISApr6 | IS66 | Alpha proteobacterium | 28 | 4.9 | |
| ISPa25 | IS110 | IS1111 | Pseudomonas aeruginosa | 28 | 4.9 |
| ISMav4 | IS481 | Mycobacterium avium | 28 | 4.9 | |
| ISDar2 | IS4 | IS4Sa | Dechloromonas aromatica | 28 | 4.9 |
| ISPlu15 | ISNCY | ISPlu15 | Photorhabdus luminescens | 28 | 4.9 |
| IS231R | IS4 | IS231 | Bacillus anthracis | 28 | 4.9 |
| ISRso15 | ISL3 | - | Ralstonia solanacearum | 28 | 4.9 |
| ISPsp3 | IS5 | IS5 | Pseudomonas sp. | 28 | 4.9 |
| IS4811 | IS5 | IS1031 | Streptomyces lividans | 28 | 4.9 |
| IS1547 | IS110 | - | Mycobacterium tuberculosis | 28 | 4.9 |
| IS1113 | IS256 | - | Xanthomonas oryzae | 28 | 4.9 |
>ISMmg2
Length = 1380
Score = 36.2 bits (18), Expect = 0.020
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 145 gcccagcgcgtagtgattgggc 166
|||||||||||||||| |||||
Sbjct: 620 gcccagcgcgtagtgaatgggc 641
>ISMra3
Length = 1398
Score = 32.2 bits (16), Expect = 0.31
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 209 gccatccgcgcctgca 224
||||||||||||||||
Sbjct: 736 gccatccgcgcctgca 751
>ISRhba1
Length = 2457
Score = 32.2 bits (16), Expect = 0.31
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 81 cctcgcccagcgcatc 96
||||||||||||||||
Sbjct: 428 cctcgcccagcgcatc 443
>ISRssp12
Length = 1554
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 220 ctgcacctcgctggc 234
|||||||||||||||
Sbjct: 679 ctgcacctcgctggc 665
>ISPfr3
Length = 1457
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 189 cgccggtctcgagca 203
|||||||||||||||
Sbjct: 1419 cgccggtctcgagca 1405
>ISPfr2
Length = 1731
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 189 cgccggtctcgagca 203
|||||||||||||||
Sbjct: 1415 cgccggtctcgagca 1401
>ISAzo11
Length = 1280
Score = 30.2 bits (15), Expect = 1.2
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 83 tcgcccagcgcatcgatct 101
||||||||||| |||||||
Sbjct: 153 tcgcccagcgcgtcgatct 135
>ISMyca1
Length = 1968
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 67 catctgaccaacggc 81
|||||||||||||||
Sbjct: 668 catctgaccaacggc 682
>ISBlo8
Length = 1408
Score = 30.2 bits (15), Expect = 1.2
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 202 caagcgcgccatccgcgcc 220
||||||| |||||||||||
Sbjct: 1183 caagcgctccatccgcgcc 1201
>ISPa42
Length = 16941
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 229 gctggccggcaagcc 243
|||||||||||||||
Sbjct: 10388 gctggccggcaagcc 10374
>ISH8E
Length = 1403
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 99 tctgtgcgtcgtcga 113
|||||||||||||||
Sbjct: 1319 tctgtgcgtcgtcga 1305
>ISPa43
Length = 19903
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 170 gcgcccatgcggcg 183
||||||||||||||
Sbjct: 9039 gcgcccatgcggcg 9052
>ISRbac1
Length = 1544
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 92 gcatcgatctgtgc 105
||||||||||||||
Sbjct: 597 gcatcgatctgtgc 584
>ISAcp1
Length = 1483
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 78 cggcctcgcccagc 91
||||||||||||||
Sbjct: 473 cggcctcgcccagc 460
>ISArsp6
Length = 26712
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 230 ctggccggcaagcc 243
||||||||||||||
Sbjct: 13731 ctggccggcaagcc 13744
>ISPlpa1
Length = 1849
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 107 tcgtcgacatccca 120
||||||||||||||
Sbjct: 1528 tcgtcgacatccca 1541
>ISMex24
Length = 1677
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 80 gcctcgcccagcgc 93
||||||||||||||
Sbjct: 457 gcctcgcccagcgc 470
>ISMex22
Length = 3864
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 48 agccgtgcgtcacg 61
||||||||||||||
Sbjct: 1542 agccgtgcgtcacg 1555
>ISThsp5
Length = 2652
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 80 gcctcgcccagcgc 93
||||||||||||||
Sbjct: 498 gcctcgcccagcgc 485
>ISCARN22
Length = 2674
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 7 caggttgttctgcc 20
||||||||||||||
Sbjct: 2323 caggttgttctgcc 2310
>ISApr6
Length = 2479
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 204 agcgcgccatccgc 217
||||||||||||||
Sbjct: 2231 agcgcgccatccgc 2244
>ISPa25
Length = 1410
Score = 28.2 bits (14), Expect = 4.9
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 222 gcacctcgctggccggca 239
|||| |||||||||||||
Sbjct: 330 gcacgtcgctggccggca 313
>ISMav4
Length = 1089
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 78 cggcctcgcccagc 91
||||||||||||||
Sbjct: 267 cggcctcgcccagc 254
>ISDar2
Length = 1322
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 197 tcgagcaagcgcgc 210
||||||||||||||
Sbjct: 450 tcgagcaagcgcgc 463
>ISPlu15
Length = 817
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 12 tgttctgccagttg 25
||||||||||||||
Sbjct: 748 tgttctgccagttg 735
>IS231R
Length = 1659
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 134 ttggctacatagcc 147
||||||||||||||
Sbjct: 296 ttggctacatagcc 283
>ISRso15
Length = 1304
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 85 gcccagcgcatcga 98
||||||||||||||
Sbjct: 696 gcccagcgcatcga 709
>ISPsp3
Length = 1190
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 165 gcacggcgcccatg 178
||||||||||||||
Sbjct: 836 gcacggcgcccatg 823
>IS4811
Length = 5396
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 216 gcgcctgcacctcg 229
||||||||||||||
Sbjct: 4899 gcgcctgcacctcg 4912
>IS1547
Length = 1351
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 87 ccagcgcatcgatc 100
||||||||||||||
Sbjct: 582 ccagcgcatcgatc 569
>IS1113
Length = 1306
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 170 gcgcccatgcggcg 183
||||||||||||||
Sbjct: 226 gcgcccatgcggcg 213
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_279_length_249_cov_0.69186_ID_5728
(249 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISRhosp1 | IS3 | IS3 | Rhodococcus sp. | 36 | 0.020 |
| ISAs32 | IS3 | IS51 | Aeromonas salmonicida | 34 | 0.079 |
| ISRsp3 | IS21 | Rhizobium sp. | 34 | 0.079 | |
| ISAzs25 | IS1380 | Azospirillum sp. | 32 | 0.31 | |
| TnXo19 | Tn3 | Xanthomonas oryzae | 30 | 1.2 | |
| ISNma11 | IS200/IS605 | IS1341 | Natrialba magadii | 30 | 1.2 |
| ISAs20 | IS3 | IS3 | Aeromonas salmonicida | 30 | 1.2 |
| ISAzs28 | IS5 | IS1031 | Azospirillum sp. | 30 | 1.2 |
| ISVsp16 | IS1182 | Verrucomicrobium spinosum | 30 | 1.2 | |
| ISBxe2 | IS3 | IS3 | Burkholderia xenovorans | 30 | 1.2 |
| ISCARN93 | IS4 | IS4Sa | Metagenomic data from CARNOULES | 30 | 1.2 |
| ISRm2 | IS66 | Sinorhizobium meliloti | 30 | 1.2 | |
| IS1002 | IS481 | - | Bordetella parapertussis | 30 | 1.2 |
| TnAs3 | Tn3 | Aeromonas salmonicida | 28 | 4.9 | |
| ISAeme13 | IS4 | IS4 | Aeromonas media | 28 | 4.9 |
| ISHvo24 | IS200/IS605 | IS1341 | Haloferax volcanii | 28 | 4.9 |
| TnAs2 | Tn3 | Aeromonas salmonicida | 28 | 4.9 | |
| ISAs30 | IS4 | IS4 | Aeromonas salmonicida | 28 | 4.9 |
| ISAzs32 | IS110 | IS1111 | Azospirillum sp. | 28 | 4.9 |
| ISStro2 | IS5 | ISL2 | Streptosporangium roseum | 28 | 4.9 |
| ISScl2 | ISAzo13 | Streptomyces clavuligerus | 28 | 4.9 | |
| ISSpma3 | IS3 | IS407 | Sphingopyxis macrogoltabida | 28 | 4.9 |
| ISPfr1 | ISL3 | Propionibacterium freudenreichii | 28 | 4.9 | |
| ISArsp6 | Tn3 | Arthrobacter sp. | 28 | 4.9 | |
| ISArsp5 | IS110 | Arthrobacter sp. | 28 | 4.9 | |
| ISGosp1 | IS1380 | Gordonia sp. | 28 | 4.9 | |
| IS693 | IS66 | Rhizobium sp. | 28 | 4.9 | |
| ISBrsp2 | IS1182 | Bradyrhizobium sp. | 28 | 4.9 | |
| ISMex30 | IS630 | Methylobacterium extorquens | 28 | 4.9 | |
| ISMex10 | ISL3 | Methylobacterium extorquens | 28 | 4.9 | |
| ISThsp12 | IS1634 | Thiomonas sp. | 28 | 4.9 | |
| ISCARN75 | IS701 | Metagenomic data from CARNOULES | 28 | 4.9 | |
| ISAfe12 | IS21 | Acidithiobacillus ferrooxidans | 28 | 4.9 | |
| ISAeh1 | IS66 | Alkalilimnicola ehrlichei | 28 | 4.9 | |
| ISXo18 | IS3 | IS407 | Xanthomonas oryzae | 28 | 4.9 |
| ISXo17 | IS3 | IS407 | Xanthomonas oryzae | 28 | 4.9 |
| ISRhosp4 | IS701 | Rhodococcus sp. | 28 | 4.9 | |
| ISGsp3 | ISLre2 | Geobacillus sp. | 28 | 4.9 | |
| ISSav2 | IS701 | Streptomyces avermitilis | 28 | 4.9 | |
| ISAzvi8 | IS701 | Azotobacter vinelandii | 28 | 4.9 | |
| ISMyma5 | IS481 | - | Mycobacterium marinum | 28 | 4.9 |
| ISHch1 | IS1595 | IS1595 | Hahella chejuensis | 28 | 4.9 |
| IS1415 | IS21 | - | Rhodococcus erythropolis | 28 | 4.9 |
| IS1404 | IS3 | IS407 | Xanthomonas campestris | 28 | 4.9 |
| IS1403 | IS3 | IS407 | Xanthomonas campestris | 28 | 4.9 |
| IS1389-B | IS3 | IS407 | Xanthomonas campestris | 28 | 4.9 |
| IS1389 | IS3 | IS407 | Xanthomonas campestris | 28 | 4.9 |
| IS1382 | IS30 | - | Pseudomonas putida | 28 | 4.9 |
| IS1271 | IS4 | IS4 | Enterobacter agglomerans | 28 | 4.9 |
>ISRhosp1
Length = 1321
Score = 36.2 bits (18), Expect = 0.020
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 110 cagccgcgccagctcgtccgcc 131
||||||||| ||||||||||||
Sbjct: 291 cagccgcgcgagctcgtccgcc 270
>ISAs32
Length = 1232
Score = 34.2 bits (17), Expect = 0.079
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 145 cgctgaccagcagcacg 161
|||||||||||||||||
Sbjct: 210 cgctgaccagcagcacg 226
>ISRsp3
Length = 2489
Score = 34.2 bits (17), Expect = 0.079
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 158 cacgctgaggcacaccgccca 178
||||||||||||| |||||||
Sbjct: 690 cacgctgaggcacgccgccca 670
>ISAzs25
Length = 1614
Score = 32.2 bits (16), Expect = 0.31
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 149 gaccagcagcacgctg 164
||||||||||||||||
Sbjct: 873 gaccagcagcacgctg 888
>TnXo19
Length = 18767
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 57 tcgagcatgcgcacc 71
|||||||||||||||
Sbjct: 3413 tcgagcatgcgcacc 3399
>ISNma11
Length = 1483
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 27 gtgtcggccacgtcg 41
|||||||||||||||
Sbjct: 728 gtgtcggccacgtcg 714
>ISAs20
Length = 1674
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 146 gctgaccagcagcac 160
|||||||||||||||
Sbjct: 910 gctgaccagcagcac 924
>ISAzs28
Length = 1055
Score = 30.2 bits (15), Expect = 1.2
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 100 cggcgagcaccagccgcgc 118
|||||||||||||| ||||
Sbjct: 726 cggcgagcaccagcggcgc 708
>ISVsp16
Length = 1578
Score = 30.2 bits (15), Expect = 1.2
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 150 accagcagcacgctgaggc 168
||||||| |||||||||||
Sbjct: 1049 accagcaccacgctgaggc 1031
>ISBxe2
Length = 1287
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 110 cagccgcgccagctc 124
|||||||||||||||
Sbjct: 279 cagccgcgccagctc 265
>ISCARN93
Length = 1311
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 177 caccacagtcgccgt 191
|||||||||||||||
Sbjct: 225 caccacagtcgccgt 211
>ISRm2
Length = 2593
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 110 cagccgcgccagctc 124
|||||||||||||||
Sbjct: 1076 cagccgcgccagctc 1062
>IS1002
Length = 1030
Score = 30.2 bits (15), Expect = 1.2
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 129 gccgcctgcgccggtgcgc 147
|||||| ||||||||||||
Sbjct: 442 gccgccggcgccggtgcgc 460
>TnAs3
Length = 18735
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 127 ccgccgcctgcgcc 140
||||||||||||||
Sbjct: 4047 ccgccgcctgcgcc 4034
>ISAeme13
Length = 1425
Score = 28.2 bits (14), Expect = 4.9
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 59 gagcatgcgcaccagcgg 76
||||||||||||| ||||
Sbjct: 578 gagcatgcgcacctgcgg 561
>ISHvo24
Length = 1462
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 28 tgtcggccacgtcg 41
||||||||||||||
Sbjct: 206 tgtcggccacgtcg 193
>TnAs2
Length = 8650
Score = 28.2 bits (14), Expect = 4.9
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 110 cagccgcgccagctcgtc 127
||||||||||||| ||||
Sbjct: 3577 cagccgcgccagcgcgtc 3560
>ISAs30
Length = 1426
Score = 28.2 bits (14), Expect = 4.9
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 59 gagcatgcgcaccagcgg 76
||||||||||||| ||||
Sbjct: 579 gagcatgcgcacctgcgg 562
>ISAzs32
Length = 1601
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 114 cgcgccagctcgtc 127
||||||||||||||
Sbjct: 927 cgcgccagctcgtc 914
>ISStro2
Length = 912
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 231 gctcccggtggcgg 244
||||||||||||||
Sbjct: 210 gctcccggtggcgg 223
>ISScl2
Length = 1819
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 182 cagtcgccgtgcca 195
||||||||||||||
Sbjct: 1267 cagtcgccgtgcca 1254
>ISSpma3
Length = 1269
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 112 gccgcgccagctcg 125
||||||||||||||
Sbjct: 153 gccgcgccagctcg 140
>ISPfr1
Length = 1427
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 87 gccgccggcggccc 100
||||||||||||||
Sbjct: 564 gccgccggcggccc 551
>ISArsp6
Length = 26712
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 129 gccgcctgcgccgg 142
||||||||||||||
Sbjct: 8078 gccgcctgcgccgg 8065
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 128 cgccgcctgcgccg 141
||||||||||||||
Sbjct: 19841 cgccgcctgcgccg 19828
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 75 gggaaggacacggc 88
||||||||||||||
Sbjct: 21982 gggaaggacacggc 21995
>ISArsp5
Length = 1426
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 89 cgccggcggcccgg 102
||||||||||||||
Sbjct: 441 cgccggcggcccgg 428
>ISGosp1
Length = 1642
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 30 tcggccacgtcggc 43
||||||||||||||
Sbjct: 131 tcggccacgtcggc 144
>IS693
Length = 3078
Score = 28.2 bits (14), Expect = 4.9
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 123 tcgtccgccgcctgcgcc 140
|||||| |||||||||||
Sbjct: 1718 tcgtccaccgcctgcgcc 1701
>ISBrsp2
Length = 1547
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 128 cgccgcctgcgccg 141
||||||||||||||
Sbjct: 782 cgccgcctgcgccg 769
>ISMex30
Length = 1041
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 64 tgcgcaccagcggg 77
||||||||||||||
Sbjct: 634 tgcgcaccagcggg 647
>ISMex10
Length = 1754
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 83 cacggccgccggcg 96
||||||||||||||
Sbjct: 750 cacggccgccggcg 737
>ISThsp12
Length = 2004
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 109 ccagccgcgccagc 122
||||||||||||||
Sbjct: 248 ccagccgcgccagc 261
>ISCARN75
Length = 1369
Score = 28.2 bits (14), Expect = 4.9
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 16 caaactcgaccgtgtcgg 33
||||||||||||| ||||
Sbjct: 581 caaactcgaccgtctcgg 564
>ISAfe12
Length = 2660
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 144 gcgctgaccagcag 157
||||||||||||||
Sbjct: 1351 gcgctgaccagcag 1338
>ISAeh1
Length = 2320
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 37 cgtcggccagcgcg 50
||||||||||||||
Sbjct: 2117 cgtcggccagcgcg 2130
>ISXo18
Length = 1189
Score = 28.2 bits (14), Expect = 4.9
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 136 gcgccggtgcgctgacca 153
||||||||||||| ||||
Sbjct: 338 gcgccggtgcgctcacca 321
>ISXo17
Length = 1192
Score = 28.2 bits (14), Expect = 4.9
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 136 gcgccggtgcgctgacca 153
||||||||||||| ||||
Sbjct: 338 gcgccggtgcgctcacca 321
>ISRhosp4
Length = 1349
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 231 gctcccggtggcgg 244
||||||||||||||
Sbjct: 990 gctcccggtggcgg 1003
>ISGsp3
Length = 1709
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 197 ctcagaaacgcccg 210
||||||||||||||
Sbjct: 1320 ctcagaaacgcccg 1307
>ISSav2
Length = 1938
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 90 gccggcggcccggc 103
||||||||||||||
Sbjct: 1133 gccggcggcccggc 1120
>ISAzvi8
Length = 1482
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 38 gtcggccagcgcgc 51
||||||||||||||
Sbjct: 1347 gtcggccagcgcgc 1360
>ISMyma5
Length = 1838
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 89 cgccggcggcccgg 102
||||||||||||||
Sbjct: 1074 cgccggcggcccgg 1087
>ISHch1
Length = 1037
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 121 gctcgtccgccgcc 134
||||||||||||||
Sbjct: 790 gctcgtccgccgcc 777
>IS1415
Length = 2580
Score = 28.2 bits (14), Expect = 4.9
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 87 gccgccggcggcccggcg 104
||||||||||| ||||||
Sbjct: 287 gccgccggcggtccggcg 270
>IS1404
Length = 1203
Score = 28.2 bits (14), Expect = 4.9
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 136 gcgccggtgcgctgacca 153
||||||||||||| ||||
Sbjct: 344 gcgccggtgcgcttacca 327
>IS1403
Length = 1203
Score = 28.2 bits (14), Expect = 4.9
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 136 gcgccggtgcgctgacca 153
||||||||||||| ||||
Sbjct: 344 gcgccggtgcgctcacca 327
>IS1389-B
Length = 1203
Score = 28.2 bits (14), Expect = 4.9
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 136 gcgccggtgcgctgacca 153
||||||||||||| ||||
Sbjct: 344 gcgccggtgcgctcacca 327
>IS1389
Length = 1214
Score = 28.2 bits (14), Expect = 4.9
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 136 gcgccggtgcgctgacca 153
||||||||||||| ||||
Sbjct: 353 gcgccggtgcgctcacca 336
>IS1382
Length = 1093
Score = 28.2 bits (14), Expect = 4.9
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 32 ggccacgtcggccagcgc 49
|||||||||||| |||||
Sbjct: 591 ggccacgtcggcgagcgc 574
>IS1271
Length = 1414
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 42 gccagcgcgccgga 55
||||||||||||||
Sbjct: 668 gccagcgcgccgga 681
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_280_length_249_cov_0.77907_ID_5730
(249 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISAzs18 | IS66 | Azospirillum sp. | 32 | 0.31 | |
| ISH1A | IS5 | ISH1 | Halobacterium salinarum | 30 | 1.2 |
| ISAzs20 | IS66 | Azospirillum sp. | 30 | 1.2 | |
| ISStma4 | IS110 | Stenotrophomonas maltophilia | 30 | 1.2 | |
| ISMsm6 | IS1634 | Mycobacterium smegmatis | 30 | 1.2 | |
| ISRhosp4 | IS701 | Rhodococcus sp. | 30 | 1.2 | |
| ISHne1 | IS3 | IS51 | Hyphomonas neptunium | 30 | 1.2 |
| ISH1 | IS5 | ISH1 | Halobacterium salinarum | 30 | 1.2 |
| ISThio1 | ISKra4 | ISKra4 | Thiorhodovibrio sp. | 28 | 4.9 |
| ISClsp4 | ISLre2 | Clostridium sp. | 28 | 4.9 | |
| ISAzs21 | IS66 | Azospirillum sp. | 28 | 4.9 | |
| ISAzs4 | IS110 | IS1111 | Azospirillum sp. | 28 | 4.9 |
| ISPbe1 | IS3 | IS407 | Paracoccus bengalensis | 28 | 4.9 |
| ISBuce2 | IS5 | Burkholderia cepacia | 28 | 4.9 | |
| ISCph5 | ISAzo13 | Chlorobium phaeobacteroides | 28 | 4.9 | |
| ISMtsp6 | IS110 | IS1111 | Methylobacterium sp. | 28 | 4.9 |
| ISMno28 | IS6 | Methylobacterium nodulans | 28 | 4.9 | |
| ISMno5 | ISL3 | Methylobacterium nodulans | 28 | 4.9 | |
| ISMch5 | IS3 | IS51 | Methylobacterium chloromethanicum | 28 | 4.9 |
| ISPam3 | IS3 | IS407 | Paracoccus aminophilus | 28 | 4.9 |
| ISBuce1 | IS1182 | Burkholderia cepacia | 28 | 4.9 | |
| ISMdi18 | IS1595 | ISNwi1 | Methylobacterium dichloromethanicum | 28 | 4.9 |
| ISMex40 | IS5 | IS1031 | Methylobacterium extorquens | 28 | 4.9 |
| ISMex32 | IS5 | IS427 | Methylobacterium extorquens | 28 | 4.9 |
| ISMex26 | ISL3 | Methylobacterium extorquens | 28 | 4.9 | |
| ISMex3 | IS256 | Methylobacterium extorquens | 28 | 4.9 | |
| ISThsp8 | IS1634 | Thiomonas sp. | 28 | 4.9 | |
| ISAeh1 | IS66 | Alkalilimnicola ehrlichei | 28 | 4.9 | |
| ISAli5 | IS3 | IS150 | Azospirillum lipoferum | 28 | 4.9 |
| ISAli1 | IS5 | IS1031 | Azospirillum lipoferum | 28 | 4.9 |
| ISLxx6 | IS5 | IS427 | Leifsonia xyli | 28 | 4.9 |
| ISStac1 | IS110 | IS1111 | Streptomyces aculeolatus | 28 | 4.9 |
| ISGme6 | ISL3 | Geobacter metallireducens | 28 | 4.9 | |
| ISDsp1 | IS3 | IS407 | Dehalococcoides sp. | 28 | 4.9 |
| ISXau2 | IS3 | IS51 | Xanthobacter autotrophicus | 28 | 4.9 |
| ISMlo4 | IS3 | IS51 | Mesorhizobium loti | 28 | 4.9 |
| ISAtu4 | IS3 | IS51 | Agrobacterium tumefaciens | 28 | 4.9 |
| ISCef4 | IS4 | IS4 | Corynebacterium efficiens | 28 | 4.9 |
| ISMysp1 | IS110 | Mycobacterium sp. | 28 | 4.9 | |
| ISAzvi1 | IS1595 | ISPna2 | Azotobacter vinelandii | 28 | 4.9 |
| ISAav3 | IS5 | - | Acidovorax avenae | 28 | 4.9 |
| IS931 | IS256 | - | Burkholderia cepacia | 28 | 4.9 |
| ISHwa14 | IS5 | Haloquadratum walsbyi | 28 | 4.9 | |
| IS1407 | IS256 | - | Mycobacterium celatum | 28 | 4.9 |
>ISAzs18
Length = 2633
Score = 32.2 bits (16), Expect = 0.31
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 72 cggcgccagcggtaga 87
||||||||||||||||
Sbjct: 286 cggcgccagcggtaga 271
>ISH1A
Length = 1122
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 25 ctccgccgcctgctc 39
|||||||||||||||
Sbjct: 369 ctccgccgcctgctc 383
>ISAzs20
Length = 2811
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 71 gcggcgccagcggta 85
|||||||||||||||
Sbjct: 256 gcggcgccagcggta 242
>ISStma4
Length = 1249
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 227 ccaccgacgccctcg 241
|||||||||||||||
Sbjct: 624 ccaccgacgccctcg 638
>ISMsm6
Length = 1765
Score = 30.2 bits (15), Expect = 1.2
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 161 gtgtcggggatggccgggg 179
||||||||||| |||||||
Sbjct: 1699 gtgtcggggattgccgggg 1681
>ISRhosp4
Length = 1349
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 26 tccgccgcctgctcg 40
|||||||||||||||
Sbjct: 1199 tccgccgcctgctcg 1213
>ISHne1
Length = 1324
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 27 ccgccgcctgctcga 41
|||||||||||||||
Sbjct: 1192 ccgccgcctgctcga 1206
>ISH1
Length = 1118
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 25 ctccgccgcctgctc 39
|||||||||||||||
Sbjct: 369 ctccgccgcctgctc 383
>ISThio1
Length = 1756
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 31 cgcctgctcgatga 44
||||||||||||||
Sbjct: 1040 cgcctgctcgatga 1027
>ISClsp4
Length = 1787
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 9 gccagatcaggaag 22
||||||||||||||
Sbjct: 1427 gccagatcaggaag 1440
>ISAzs21
Length = 2598
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 72 cggcgccagcggta 85
||||||||||||||
Sbjct: 275 cggcgccagcggta 262
>ISAzs4
Length = 1301
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 25 ctccgccgcctgct 38
||||||||||||||
Sbjct: 835 ctccgccgcctgct 848
>ISPbe1
Length = 1200
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 206 ccgccgatgcccat 219
||||||||||||||
Sbjct: 1123 ccgccgatgcccat 1110
>ISBuce2
Length = 1345
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 33 cctgctcgatgagc 46
||||||||||||||
Sbjct: 1061 cctgctcgatgagc 1048
>ISCph5
Length = 1312
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 172 ggccggggcggcgt 185
||||||||||||||
Sbjct: 168 ggccggggcggcgt 181
>ISMtsp6
Length = 1495
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 202 gcccccgccgatgc 215
||||||||||||||
Sbjct: 1254 gcccccgccgatgc 1241
>ISMno28
Length = 892
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 233 acgccctcgtcctc 246
||||||||||||||
Sbjct: 97 acgccctcgtcctc 110
>ISMno5
Length = 1728
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 3 cgccgcgccagatc 16
||||||||||||||
Sbjct: 1416 cgccgcgccagatc 1403
>ISMch5
Length = 1240
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 33 cctgctcgatgagc 46
||||||||||||||
Sbjct: 984 cctgctcgatgagc 997
>ISPam3
Length = 1197
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 206 ccgccgatgcccat 219
||||||||||||||
Sbjct: 1121 ccgccgatgcccat 1108
>ISBuce1
Length = 1339
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 33 cctgctcgatgagc 46
||||||||||||||
Sbjct: 1044 cctgctcgatgagc 1031
>ISMdi18
Length = 3479
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 206 ccgccgatgcccat 219
||||||||||||||
Sbjct: 1746 ccgccgatgcccat 1759
>ISMex40
Length = 918
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 235 gccctcgtcctcga 248
||||||||||||||
Sbjct: 546 gccctcgtcctcga 559
>ISMex32
Length = 861
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 171 tggccggggcggcg 184
||||||||||||||
Sbjct: 118 tggccggggcggcg 105
>ISMex26
Length = 1676
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 19 gaagctctccgccg 32
||||||||||||||
Sbjct: 457 gaagctctccgccg 444
>ISMex3
Length = 1399
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 27 ccgccgcctgctcg 40
||||||||||||||
Sbjct: 182 ccgccgcctgctcg 195
>ISThsp8
Length = 1929
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 173 gccggggcggcgtt 186
||||||||||||||
Sbjct: 1061 gccggggcggcgtt 1074
>ISAeh1
Length = 2320
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 27 ccgccgcctgctcg 40
||||||||||||||
Sbjct: 1620 ccgccgcctgctcg 1633
>ISAli5
Length = 1266
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 166 ggggatggccgggg 179
||||||||||||||
Sbjct: 216 ggggatggccgggg 229
>ISAli1
Length = 933
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 74 gcgccagcggtaga 87
||||||||||||||
Sbjct: 336 gcgccagcggtaga 323
>ISLxx6
Length = 919
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 33 cctgctcgatgagc 46
||||||||||||||
Sbjct: 337 cctgctcgatgagc 350
>ISStac1
Length = 1484
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 85 agacgccgcgatca 98
||||||||||||||
Sbjct: 588 agacgccgcgatca 601
>ISGme6
Length = 1372
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 105 cggtgggctcggcg 118
||||||||||||||
Sbjct: 452 cggtgggctcggcg 465
>ISDsp1
Length = 1210
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 73 ggcgccagcggtag 86
||||||||||||||
Sbjct: 205 ggcgccagcggtag 192
>ISXau2
Length = 1238
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 33 cctgctcgatgagc 46
||||||||||||||
Sbjct: 982 cctgctcgatgagc 995
>ISMlo4
Length = 1239
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 33 cctgctcgatgagc 46
||||||||||||||
Sbjct: 983 cctgctcgatgagc 996
>ISAtu4
Length = 1241
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 33 cctgctcgatgagc 46
||||||||||||||
Sbjct: 985 cctgctcgatgagc 998
>ISCef4
Length = 1451
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 87 acgccgcgatcaga 100
||||||||||||||
Sbjct: 993 acgccgcgatcaga 980
>ISMysp1
Length = 1461
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 5 ccgcgccagatcag 18
||||||||||||||
Sbjct: 972 ccgcgccagatcag 959
>ISAzvi1
Length = 1026
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 28 cgccgcctgctcga 41
||||||||||||||
Sbjct: 926 cgccgcctgctcga 939
>ISAav3
Length = 1321
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 225 ccccaccgacgccc 238
||||||||||||||
Sbjct: 18 ccccaccgacgccc 31
>IS931
Length = 1477
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 135 aggccagcgcgccg 148
||||||||||||||
Sbjct: 142 aggccagcgcgccg 155
>ISHwa14
Length = 1070
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 32 gcctgctcgatgag 45
||||||||||||||
Sbjct: 417 gcctgctcgatgag 404
>IS1407
Length = 1422
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 34 ctgctcgatgagca 47
||||||||||||||
Sbjct: 124 ctgctcgatgagca 137
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_281_length_248_cov_0.847953_ID_5732
(248 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISPfr19 | IS481 | Propionibacterium freudenreichii | 34 | 0.079 | |
| ISPa43 | Tn3 | Pseudomonas aeruginosa | 30 | 1.2 | |
| ISPfr4 | ISL3 | Propionibacterium freudenreichii | 30 | 1.2 | |
| ISRhsp5 | IS66 | Rhodobacter sphaeroides | 30 | 1.2 | |
| ISRosp4 | IS66 | Roseobacter sp. | 30 | 1.2 | |
| ISBj7_B | IS66 | Bradyrhizobium japonicum | 30 | 1.2 | |
| ISSst1 | IS3 | IS407 | Sagittula stellata | 30 | 1.2 |
| IS866 | IS66 | - | Agrobacterium tumefaciens | 30 | 1.2 |
| ISRsp18 | IS5 | IS5 | Rhizobium sp. | 28 | 4.9 |
| ISAar36 | IS21 | Arthrobacter arilaitensis | 28 | 4.9 | |
| ISApr11 | IS1380 | Alpha proteobacterium | 28 | 4.9 | |
| ISAar12 | IS1380 | Arthrobacter arilaitensis | 28 | 4.9 | |
| ISCARN65 | IS21 | Metagenomic data from CARNOULES | 28 | 4.9 | |
| ISAzo26 | IS91 | Azoarcus sp. | 28 | 4.9 | |
| ISAzo15 | IS66 | Azoarcus sp. | 28 | 4.9 | |
| ISCARN21 | IS630 | Metagenomic data from CARNOULES | 28 | 4.9 | |
| ISAli18 | ISL3 | Azospirillum lipoferum | 28 | 4.9 | |
| ISAli10 | IS66 | Azospirillum lipoferum | 28 | 4.9 | |
| ISBrsp6 | IS66 | Bradyrhizobium sp. | 28 | 4.9 | |
| ISStac1 | IS110 | IS1111 | Streptomyces aculeolatus | 28 | 4.9 |
| ISDsh2 | IS3 | IS407 | Dinoroseobacter shibae | 28 | 4.9 |
| ISXo15 | IS701 | Xanthomonas oryzae | 28 | 4.9 | |
| IS883 | IS66 | Ralstonia eutropha | 28 | 4.9 |
>ISPfr19
Length = 1089
Score = 34.2 bits (17), Expect = 0.079
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 30 gcagggccgccgaacgg 46
|||||||||||||||||
Sbjct: 181 gcagggccgccgaacgg 197
>ISPa43
Length = 19903
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 31 cagggccgccgaacg 45
|||||||||||||||
Sbjct: 9106 cagggccgccgaacg 9092
>ISPfr4
Length = 1415
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 51 cgtcggccgccagcc 65
|||||||||||||||
Sbjct: 323 cgtcggccgccagcc 309
>ISRhsp5
Length = 2528
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 109 ccagcagaaggccag 123
|||||||||||||||
Sbjct: 1950 ccagcagaaggccag 1936
>ISRosp4
Length = 2709
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 109 ccagcagaaggccag 123
|||||||||||||||
Sbjct: 2031 ccagcagaaggccag 2017
>ISBj7_B
Length = 2865
Score = 30.2 bits (15), Expect = 1.2
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 109 ccagcagaaggccagcgtg 127
|||||||||||| ||||||
Sbjct: 1960 ccagcagaaggcgagcgtg 1942
>ISSst1
Length = 1167
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 81 gccgcagatcgggct 95
|||||||||||||||
Sbjct: 853 gccgcagatcgggct 867
>IS866
Length = 2716
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 109 ccagcagaaggccag 123
|||||||||||||||
Sbjct: 2062 ccagcagaaggccag 2048
>ISRsp18
Length = 1560
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 35 gccgccgaacgggc 48
||||||||||||||
Sbjct: 80 gccgccgaacgggc 93
>ISAar36
Length = 2571
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 94 ctcgccgcgatacg 107
||||||||||||||
Sbjct: 1581 ctcgccgcgatacg 1594
>ISApr11
Length = 1667
Score = 28.2 bits (14), Expect = 4.9
Identities = 23/26 (88%)
Strand = Plus / Minus
Query: 34 ggccgccgaacgggccgcgtcggccg 59
||||||| |||||||||||| ||||
Sbjct: 929 ggccgccccacgggccgcgtcagccg 904
>ISAar12
Length = 1736
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 12 cgggcgcgatgacg 25
||||||||||||||
Sbjct: 1209 cgggcgcgatgacg 1196
>ISCARN65
Length = 2433
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 235 tcgcaggtgtttgc 248
||||||||||||||
Sbjct: 2367 tcgcaggtgtttgc 2354
>ISAzo26
Length = 2604
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 33 gggccgccgaacgg 46
||||||||||||||
Sbjct: 1776 gggccgccgaacgg 1763
>ISAzo15
Length = 2441
Score = 28.2 bits (14), Expect = 4.9
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 44 cgggccgcgtcggccgcc 61
|||||| |||||||||||
Sbjct: 931 cgggccacgtcggccgcc 914
>ISCARN21
Length = 1249
Score = 28.2 bits (14), Expect = 4.9
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 27 tgggcagggccgccgaac 44
|||||| |||||||||||
Sbjct: 410 tgggcatggccgccgaac 427
>ISAli18
Length = 1752
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 51 cgtcggccgccagc 64
||||||||||||||
Sbjct: 1516 cgtcggccgccagc 1503
>ISAli10
Length = 2584
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 44 cgggccgcgtcggc 57
||||||||||||||
Sbjct: 1026 cgggccgcgtcggc 1013
>ISBrsp6
Length = 3112
Score = 28.2 bits (14), Expect = 4.9
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 109 ccagcagaaggccagcgt 126
|||||||||||| |||||
Sbjct: 1893 ccagcagaaggcgagcgt 1876
>ISStac1
Length = 1484
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 44 cgggccgcgtcggc 57
||||||||||||||
Sbjct: 617 cgggccgcgtcggc 604
>ISDsh2
Length = 1203
Score = 28.2 bits (14), Expect = 4.9
Identities = 20/22 (90%)
Strand = Plus / Minus
Query: 1 catgggctgaccgggcgcgatg 22
|||||||| ||||||||||||
Sbjct: 961 catgggctttccgggcgcgatg 940
>ISXo15
Length = 1473
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 115 gaaggccagcgtgg 128
||||||||||||||
Sbjct: 1379 gaaggccagcgtgg 1366
>IS883
Length = 2461
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 90 cgggctcgccgcga 103
||||||||||||||
Sbjct: 549 cgggctcgccgcga 562
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_282_length_248_cov_0.847953_ID_5734
(248 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| IS431R | IS6 | - | Staphylococcus aureus | 32 | 0.31 |
| IS431mec | IS6 | - | Staphylococcus aureus | 32 | 0.31 |
| IS431L | IS6 | - | Staphylococcus aureus | 32 | 0.31 |
| IS257R1 | IS6 | - | Staphylococcus aureus | 32 | 0.31 |
| IS257-3 | IS6 | - | Staphylococcus aureus | 32 | 0.31 |
| IS257R2 | IS6 | - | Staphylococcus aureus | 32 | 0.31 |
| ISShes9 | IS66 | Shewanella sp. | 30 | 1.2 | |
| ISPca1 | IS4 | IS4Sa | Pelobacter carbinolicus | 30 | 1.2 |
| ISSeq6 | IS30 | Streptococcus equi | 30 | 1.2 | |
| ISSna1 | ISNCY | ISDol1 | Streptomyces natalensis | 28 | 4.9 |
| ISNpe3 | IS630 | Natrinema pellirubrum | 28 | 4.9 | |
| ISOan7 | IS256 | Octadecabacter antarcticus | 28 | 4.9 | |
| ISPha2 | IS5 | Paracoccus halophilus | 28 | 4.9 | |
| ISHmo1 | IS1380 | Heliobacterium modesticaldum | 28 | 4.9 | |
| ISCARN52 | IS110 | Metagenomic data from CARNOULES | 28 | 4.9 | |
| ISMae7 | IS4 | IS50 | Microcystis aeruginosa | 28 | 4.9 |
| IS1629 | ISAs1 | - | Streptomyces sp. | 28 | 4.9 |
| IS1328 | IS110 | IS1111 | Yersinia enterocolitica | 28 | 4.9 |
>IS431R
Length = 790
Score = 32.2 bits (16), Expect = 0.31
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 135 taccttgtctttctta 150
||||||||||||||||
Sbjct: 595 taccttgtctttctta 580
>IS431mec
Length = 790
Score = 32.2 bits (16), Expect = 0.31
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 135 taccttgtctttctta 150
||||||||||||||||
Sbjct: 595 taccttgtctttctta 580
>IS431L
Length = 788
Score = 32.2 bits (16), Expect = 0.31
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 135 taccttgtctttctta 150
||||||||||||||||
Sbjct: 595 taccttgtctttctta 580
>IS257R1
Length = 790
Score = 32.2 bits (16), Expect = 0.31
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 135 taccttgtctttctta 150
||||||||||||||||
Sbjct: 595 taccttgtctttctta 580
>IS257-3
Length = 789
Score = 32.2 bits (16), Expect = 0.31
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 135 taccttgtctttctta 150
||||||||||||||||
Sbjct: 595 taccttgtctttctta 580
>IS257R2
Length = 789
Score = 32.2 bits (16), Expect = 0.31
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 135 taccttgtctttctta 150
||||||||||||||||
Sbjct: 595 taccttgtctttctta 580
>ISShes9
Length = 2370
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 41 tcagcctcaacggct 55
|||||||||||||||
Sbjct: 1066 tcagcctcaacggct 1052
>ISPca1
Length = 1251
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 59 ccggcagcaacggtt 73
|||||||||||||||
Sbjct: 919 ccggcagcaacggtt 933
>ISSeq6
Length = 1346
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 136 accttgtctttctta 150
|||||||||||||||
Sbjct: 653 accttgtctttctta 639
>ISSna1
Length = 1560
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 5 ccgccaacgactgg 18
||||||||||||||
Sbjct: 1205 ccgccaacgactgg 1218
>ISNpe3
Length = 1055
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 33 cgcgccgttcagcc 46
||||||||||||||
Sbjct: 479 cgcgccgttcagcc 492
>ISOan7
Length = 1387
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 145 ttcttaacaaatcc 158
||||||||||||||
Sbjct: 176 ttcttaacaaatcc 163
>ISPha2
Length = 1387
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 77 gacctccccggaca 90
||||||||||||||
Sbjct: 631 gacctccccggaca 644
>ISHmo1
Length = 1700
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 141 gtctttcttaacaa 154
||||||||||||||
Sbjct: 207 gtctttcttaacaa 194
>ISCARN52
Length = 1640
Score = 28.2 bits (14), Expect = 4.9
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 57 caccggcagcaacggttc 74
||||| ||||||||||||
Sbjct: 729 caccgccagcaacggttc 712
>ISMae7
Length = 1589
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 142 tctttcttaacaaa 155
||||||||||||||
Sbjct: 18 tctttcttaacaaa 31
>IS1629
Length = 1462
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 233 cggcctggttgccg 246
||||||||||||||
Sbjct: 226 cggcctggttgccg 239
>IS1328
Length = 1343
Score = 28.2 bits (14), Expect = 4.9
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 204 aagaaaaccctgttagct 221
||||||||||||| ||||
Sbjct: 51 aagaaaaccctgtcagct 34
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_283_length_248_cov_0.853801_ID_5736
(248 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISLcr2 | ISLre2 | Lactobacillus crispatus | 34 | 0.079 | |
| ISCARN78 | IS21 | Metagenomic data from CARNOULES | 34 | 0.079 | |
| ISPst5 | IS5 | IS5 | Pseudomonas stutzeri | 32 | 0.31 |
| ISPa52 | IS5 | IS5 | Pseudomonas aeruginosa | 30 | 1.2 |
| ISEc41 | IS200/IS605 | Escherichia coli | 30 | 1.2 | |
| ISDpr4 | IS66 | Delta proteobacterium | 30 | 1.2 | |
| ISMca1 | IS5 | Methylococcus capsulatus | 30 | 1.2 | |
| ISAba28 | IS66 | Acinetobacter baumannii | 28 | 4.9 | |
| ISPa38 | Tn3 | Pseudomonas aeruginosa | 28 | 4.9 | |
| ISVsp7 | ISAs1 | Verrucomicrobium spinosum | 28 | 4.9 | |
| ISCpo1 | ISNCY | ISDol1 | Candidatus Poribacteria sp. | 28 | 4.9 |
| ISCARN17 | IS21 | Metagenomic data from CARNOULES | 28 | 4.9 | |
| ISSde4 | IS110 | IS1111 | Shewanella denitrificans | 28 | 4.9 |
| ISGme3 | IS5 | IS5 | Geobacter metallireducens | 28 | 4.9 |
| ISCausp1 | IS3 | IS3 | Caulobacter sp. | 28 | 4.9 |
| ISPpu13 | IS66 | Pseudomonas putida | 28 | 4.9 | |
| ISCgl1 | IS481 | Corynebacterium glutamicum | 28 | 4.9 | |
| IS5564 | IS481 | Corynebacterium striatum | 28 | 4.9 | |
| IS1650 | IS5 | IS427 | Streptomyces coelicolor | 28 | 4.9 |
| IS1489v1 | ISL3 | - | Pseudomonas putida | 28 | 4.9 |
| IS1162 | IS21 | - | Pseudomonas fluorescens | 28 | 4.9 |
>ISLcr2
Length = 1599
Score = 34.2 bits (17), Expect = 0.079
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 24 gatgcgctgaacaaagccaag 44
|||||||||||| ||||||||
Sbjct: 807 gatgcgctgaacgaagccaag 827
>ISCARN78
Length = 2644
Score = 34.2 bits (17), Expect = 0.079
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 65 gtatctgcgccgcgttgcggt 85
||||||||||||| |||||||
Sbjct: 304 gtatctgcgccgctttgcggt 324
>ISPst5
Length = 1191
Score = 32.2 bits (16), Expect = 0.31
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 26 tgcgctgaacaaagccaagc 45
||||||| ||||||||||||
Sbjct: 824 tgcgctgtacaaagccaagc 843
>ISPa52
Length = 1190
Score = 30.2 bits (15), Expect = 1.2
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 27 gcgctgaacaaagccaagc 45
|||||| ||||||||||||
Sbjct: 824 gcgctgtacaaagccaagc 842
>ISEc41
Length = 1841
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 15 gcgctggtcgatgcg 29
|||||||||||||||
Sbjct: 1085 gcgctggtcgatgcg 1071
>ISDpr4
Length = 2431
Score = 30.2 bits (15), Expect = 1.2
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 229 ggggatcattgtccggcct 247
||||||||||| |||||||
Sbjct: 453 ggggatcattggccggcct 435
>ISMca1
Length = 1336
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 14 cgcgctggtcgatgc 28
|||||||||||||||
Sbjct: 178 cgcgctggtcgatgc 192
>ISAba28
Length = 2740
Score = 28.2 bits (14), Expect = 4.9
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 179 gggtctttgggctgcagc 196
|||||||||||| |||||
Sbjct: 2028 gggtctttgggcagcagc 2011
>ISPa38
Length = 6455
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 19 tggtcgatgcgctg 32
||||||||||||||
Sbjct: 3161 tggtcgatgcgctg 3148
>ISVsp7
Length = 1237
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 73 gccgcgttgcggtc 86
||||||||||||||
Sbjct: 1089 gccgcgttgcggtc 1076
>ISCpo1
Length = 1918
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 200 gatggggctgcagg 213
||||||||||||||
Sbjct: 340 gatggggctgcagg 353
>ISCARN17
Length = 2539
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 94 ccatgggtgccggg 107
||||||||||||||
Sbjct: 1199 ccatgggtgccggg 1186
>ISSde4
Length = 1379
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 180 ggtctttgggctgc 193
||||||||||||||
Sbjct: 398 ggtctttgggctgc 385
>ISGme3
Length = 1484
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 214 ttgtcaaagaccgt 227
||||||||||||||
Sbjct: 233 ttgtcaaagaccgt 220
>ISCausp1
Length = 1262
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 17 gctggtcgatgcgc 30
||||||||||||||
Sbjct: 852 gctggtcgatgcgc 865
>ISPpu13
Length = 2370
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 12 gccgcgctggtcga 25
||||||||||||||
Sbjct: 167 gccgcgctggtcga 180
>ISCgl1
Length = 2435
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 189 gctgcagctccgat 202
||||||||||||||
Sbjct: 1306 gctgcagctccgat 1293
>IS5564
Length = 2437
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 189 gctgcagctccgat 202
||||||||||||||
Sbjct: 1305 gctgcagctccgat 1292
>IS1650
Length = 898
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 18 ctggtcgatgcgct 31
||||||||||||||
Sbjct: 686 ctggtcgatgcgct 673
>IS1489v1
Length = 1898
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 24 gatgcgctgaacaa 37
||||||||||||||
Sbjct: 155 gatgcgctgaacaa 168
>IS1162
Length = 2634
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 40 ccaagcccgcgacg 53
||||||||||||||
Sbjct: 1709 ccaagcccgcgacg 1722
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_284_length_248_cov_0.853801_ID_5738
(248 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISC1395 | IS630 | Sulfolobus solfataricus | 34 | 0.079 | |
| ISMex3 | IS256 | Methylobacterium extorquens | 32 | 0.31 | |
| ISMex22 | Tn3 | Methylobacterium extorquens | 32 | 0.31 | |
| ISVei1 | IS3 | IS3 | Verminephrobacter eiseniae | 32 | 0.31 |
| ISAzo5 | IS4 | IS50 | Azoarcus sp. | 32 | 0.31 |
| ISSiac5 | ISLre2 | Singulisphaera acidiphila | 30 | 1.2 | |
| ISSusp3 | ISKra4 | ISAzba1 | Sulfitobacter sp. | 30 | 1.2 |
| ISMme1 | ISAzo13 | Mesorhizobium metallidurans | 30 | 1.2 | |
| ISAzs22 | ISAs1 | Azospirillum sp. | 30 | 1.2 | |
| ISBam3 | IS5 | IS903 | Burkholderia ambifaria | 30 | 1.2 |
| ISStsp8 | IS5 | ISL2 | Streptomyces sp. | 30 | 1.2 |
| ISShes11 | Tn3 | Shewanella sp. | 30 | 1.2 | |
| ISMno33 | IS1182 | Methylobacterium nodulans | 30 | 1.2 | |
| IS112 | IS5 | ISL2 | Streptomyces albus | 30 | 1.2 |
| ISGrh1 | ISNCY | ISDol1 | Gordonia rhizosphera | 28 | 4.9 |
| TnXo19 | Tn3 | Xanthomonas oryzae | 28 | 4.9 | |
| ISThio1 | ISKra4 | ISKra4 | Thiorhodovibrio sp. | 28 | 4.9 |
| ISCysp26 | ISKra4 | ISMich2 | Cyanothece sp. | 28 | 4.9 |
| ISRjo4 | IS256 | Rhodococcus jostii | 28 | 4.9 | |
| ISAzs5 | ISAs1 | Azospirillum sp. | 28 | 4.9 | |
| ISRm20 | IS481 | Sinorhizobium meliloti | 28 | 4.9 | |
| ISGpr5 | IS5 | IS5 | Gamma proteobacterium | 28 | 4.9 |
| ISRhsp6 | IS5 | IS5 | Rhodobacter sphaeroides | 28 | 4.9 |
| ISRhsp1 | IS5 | IS5 | Rhodobacter sphaeroides | 28 | 4.9 |
| ISPhae1 | IS5 | IS5 | Paracoccus haeundaensis | 28 | 4.9 |
| ISStsp2 | ISAzo13 | Streptomyces sp. | 28 | 4.9 | |
| ISMra3 | IS256 | Methylobacterium radiotolerans | 28 | 4.9 | |
| ISMno12 | IS5 | IS1031 | Methylobacterium nodulans | 28 | 4.9 |
| ISMtsp8 | IS21 | Methylobacterium sp. | 28 | 4.9 | |
| ISMno5 | ISL3 | Methylobacterium nodulans | 28 | 4.9 | |
| ISArsp6 | Tn3 | Arthrobacter sp. | 28 | 4.9 | |
| ISAar39 | ISL3 | Arthrobacter arilaitensis | 28 | 4.9 | |
| ISAar22 | IS481 | Arthrobacter arilaitensis | 28 | 4.9 | |
| ISBfun3 | IS1182 | Burkholderia fungorum | 28 | 4.9 | |
| ISAzba6 | IS630 | Azospirillum brasilense | 28 | 4.9 | |
| ISMex31 | IS110 | IS1111 | Methylobacterium extorquens | 28 | 4.9 |
| ISThsp19 | IS21 | Thiomonas sp. | 28 | 4.9 | |
| ISCARN110 | IS91 | Metagenomic data from CARNOULES | 28 | 4.9 | |
| ISCARN101 | IS3 | IS3 | Metagenomic data from CARNOULES | 28 | 4.9 |
| ISAzo18 | IS3 | IS150 | Azoarcus sp. | 28 | 4.9 |
| ISCARN66 | IS5 | IS5 | Metagenomic data from CARNOULES | 28 | 4.9 |
| ISCARN53 | ISNCY | IS1202 | Metagenomic data from CARNOULES | 28 | 4.9 |
| ISCARN49 | IS21 | Metagenomic data from CARNOULES | 28 | 4.9 | |
| ISCARN14 | IS5 | IS1031 | Metagenomic data from CARNOULES | 28 | 4.9 |
| ISAzca1 | IS1595 | ISNha5 | Azorhizobium caulinodans | 28 | 4.9 |
| ISLxc1 | IS21 | Leifsonia xyli | 28 | 4.9 | |
| ISDvu5 | ISL3 | Desulfovibrio vulgaris | 28 | 4.9 | |
| ISGur14 | IS701 | Geobacter uraniumreducens | 28 | 4.9 | |
| ISSod23 | IS200/IS605 | IS200 | Shewanella oneidensis | 28 | 4.9 |
| ISNisp2 | IS1595 | ISNwi1 | Nitrobacter sp. | 28 | 4.9 |
| ISSav2 | IS701 | Streptomyces avermitilis | 28 | 4.9 | |
| IS3501 | IS3 | IS51 | Corynebacterium jeikeium | 28 | 4.9 |
| IS1512 | IS256 | - | Mycobacterium gordonae | 28 | 4.9 |
| IS1356 | IS256 | - | Burkholderia cepacia | 28 | 4.9 |
| IS1246 | IS5 | IS5 | Pseudomonas putida | 28 | 4.9 |
| IS1237 | IS5 | IS427 | Clavibacter xyli subsp. cynodontis | 28 | 4.9 |
>ISC1395
Length = 1392
Score = 34.2 bits (17), Expect = 0.079
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 111 ttcttccttttctctcc 127
|||||||||||||||||
Sbjct: 437 ttcttccttttctctcc 421
>ISMex3
Length = 1399
Score = 32.2 bits (16), Expect = 0.31
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 72 ccgcctcggccgccgc 87
||||||||||||||||
Sbjct: 1011 ccgcctcggccgccgc 996
>ISMex22
Length = 3864
Score = 32.2 bits (16), Expect = 0.31
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 73 cgcctcggccgccgcg 88
||||||||||||||||
Sbjct: 1827 cgcctcggccgccgcg 1812
>ISVei1
Length = 1214
Score = 32.2 bits (16), Expect = 0.31
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 40 cgagatcggccacacctggc 59
||||||||||||| ||||||
Sbjct: 329 cgagatcggccacgcctggc 310
>ISAzo5
Length = 1478
Score = 32.2 bits (16), Expect = 0.31
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 34 ggcgcgcgagatcggc 49
||||||||||||||||
Sbjct: 944 ggcgcgcgagatcggc 959
>ISSiac5
Length = 1429
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 144 ccccgacacccctgg 158
|||||||||||||||
Sbjct: 56 ccccgacacccctgg 70
>ISSusp3
Length = 1434
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 154 cctggccgcttctcg 168
|||||||||||||||
Sbjct: 1154 cctggccgcttctcg 1140
>ISMme1
Length = 1324
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 73 cgcctcggccgccgc 87
|||||||||||||||
Sbjct: 181 cgcctcggccgccgc 167
>ISAzs22
Length = 1267
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 72 ccgcctcggccgccg 86
|||||||||||||||
Sbjct: 364 ccgcctcggccgccg 350
>ISBam3
Length = 1133
Score = 30.2 bits (15), Expect = 1.2
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 70 gcccgcctcggccgccgcg 88
||||| |||||||||||||
Sbjct: 870 gcccgactcggccgccgcg 888
>ISStsp8
Length = 881
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 185 accggatcatcgacc 199
|||||||||||||||
Sbjct: 286 accggatcatcgacc 300
>ISShes11
Length = 7669
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 72 ccgcctcggccgccg 86
|||||||||||||||
Sbjct: 1181 ccgcctcggccgccg 1167
>ISMno33
Length = 1767
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 70 gcccgcctcggccgc 84
|||||||||||||||
Sbjct: 1204 gcccgcctcggccgc 1218
>IS112
Length = 883
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 185 accggatcatcgacc 199
|||||||||||||||
Sbjct: 286 accggatcatcgacc 300
>ISGrh1
Length = 1673
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 56 tggctgctcacctt 69
||||||||||||||
Sbjct: 130 tggctgctcacctt 117
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 184 caccggatcatcga 197
||||||||||||||
Sbjct: 217 caccggatcatcga 204
>TnXo19
Length = 18767
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 213 ggcgccggactttt 226
||||||||||||||
Sbjct: 3528 ggcgccggactttt 3515
>ISThio1
Length = 1756
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 30 gcaaggcgcgcgag 43
||||||||||||||
Sbjct: 805 gcaaggcgcgcgag 818
>ISCysp26
Length = 1758
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 111 ttcttccttttctc 124
||||||||||||||
Sbjct: 339 ttcttccttttctc 326
>ISRjo4
Length = 1458
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 81 ccgccgcgggcgcg 94
||||||||||||||
Sbjct: 332 ccgccgcgggcgcg 345
>ISAzs5
Length = 1333
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 74 gcctcggccgccgc 87
||||||||||||||
Sbjct: 1017 gcctcggccgccgc 1004
>ISRm20
Length = 1265
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 165 ctcgccatccgccc 178
||||||||||||||
Sbjct: 1125 ctcgccatccgccc 1138
>ISGpr5
Length = 1558
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 235 ctgcatgagcaggc 248
||||||||||||||
Sbjct: 945 ctgcatgagcaggc 958
>ISRhsp6
Length = 1486
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 40 cgagatcggccaca 53
||||||||||||||
Sbjct: 1253 cgagatcggccaca 1266
>ISRhsp1
Length = 1486
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 40 cgagatcggccaca 53
||||||||||||||
Sbjct: 1253 cgagatcggccaca 1266
>ISPhae1
Length = 1485
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 85 cgcgggcgcgctcg 98
||||||||||||||
Sbjct: 629 cgcgggcgcgctcg 616
>ISStsp2
Length = 1752
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 72 ccgcctcggccgcc 85
||||||||||||||
Sbjct: 315 ccgcctcggccgcc 302
>ISMra3
Length = 1398
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 74 gcctcggccgccgc 87
||||||||||||||
Sbjct: 391 gcctcggccgccgc 404
>ISMno12
Length = 924
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 91 cgcgctcgccttgc 104
||||||||||||||
Sbjct: 478 cgcgctcgccttgc 465
>ISMtsp8
Length = 2371
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 34 ggcgcgcgagatcg 47
||||||||||||||
Sbjct: 796 ggcgcgcgagatcg 783
>ISMno5
Length = 1728
Score = 28.2 bits (14), Expect = 4.9
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 78 cggccgccgcgggcgcgc 95
||||| ||||||||||||
Sbjct: 705 cggccaccgcgggcgcgc 722
>ISArsp6
Length = 26712
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 79 ggccgccgcgggcg 92
||||||||||||||
Sbjct: 17477 ggccgccgcgggcg 17464
>ISAar39
Length = 1433
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 191 tcatcgaccggatg 204
||||||||||||||
Sbjct: 475 tcatcgaccggatg 488
>ISAar22
Length = 1722
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 18 cagtacgctggggc 31
||||||||||||||
Sbjct: 1256 cagtacgctggggc 1243
>ISBfun3
Length = 1627
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 24 gctggggcaaggcg 37
||||||||||||||
Sbjct: 1281 gctggggcaaggcg 1294
>ISAzba6
Length = 1138
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 63 tcaccttgcccgcc 76
||||||||||||||
Sbjct: 817 tcaccttgcccgcc 804
>ISMex31
Length = 1091
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 90 gcgcgctcgccttg 103
||||||||||||||
Sbjct: 1006 gcgcgctcgccttg 993
>ISThsp19
Length = 2657
Score = 28.2 bits (14), Expect = 4.9
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 76 ctcggccgccgcgggcgc 93
||||| ||||||||||||
Sbjct: 1602 ctcggacgccgcgggcgc 1619
>ISCARN110
Length = 2294
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 63 tcaccttgcccgcc 76
||||||||||||||
Sbjct: 1297 tcaccttgcccgcc 1310
>ISCARN101
Length = 1672
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 12 ccaaggcagtacgc 25
||||||||||||||
Sbjct: 936 ccaaggcagtacgc 949
>ISAzo18
Length = 1471
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 23 cgctggggcaaggc 36
||||||||||||||
Sbjct: 54 cgctggggcaaggc 41
>ISCARN66
Length = 1161
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 82 cgccgcgggcgcgc 95
||||||||||||||
Sbjct: 755 cgccgcgggcgcgc 768
>ISCARN53
Length = 1404
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 28 gggcaaggcgcgcg 41
||||||||||||||
Sbjct: 1336 gggcaaggcgcgcg 1323
>ISCARN49
Length = 2630
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 80 gccgccgcgggcgc 93
||||||||||||||
Sbjct: 278 gccgccgcgggcgc 265
>ISCARN14
Length = 1226
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 75 cctcggccgccgcg 88
||||||||||||||
Sbjct: 850 cctcggccgccgcg 837
>ISAzca1
Length = 4520
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 204 ggtgcccaaggcgc 217
||||||||||||||
Sbjct: 250 ggtgcccaaggcgc 237
>ISLxc1
Length = 3533
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 72 ccgcctcggccgcc 85
||||||||||||||
Sbjct: 217 ccgcctcggccgcc 230
>ISDvu5
Length = 1357
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 73 cgcctcggccgccg 86
||||||||||||||
Sbjct: 784 cgcctcggccgccg 771
>ISGur14
Length = 1529
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 65 accttgcccgcctc 78
||||||||||||||
Sbjct: 1100 accttgcccgcctc 1113
>ISSod23
Length = 619
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 107 gcacttcttccttt 120
||||||||||||||
Sbjct: 374 gcacttcttccttt 361
>ISNisp2
Length = 2637
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 117 cttttctctccggg 130
||||||||||||||
Sbjct: 1089 cttttctctccggg 1076
>ISSav2
Length = 1938
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 78 cggccgccgcgggc 91
||||||||||||||
Sbjct: 1046 cggccgccgcgggc 1059
>IS3501
Length = 1301
Score = 28.2 bits (14), Expect = 4.9
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 186 ccggatcatcgaccggat 203
||||||||||| ||||||
Sbjct: 706 ccggatcatcgtccggat 723
>IS1512
Length = 1314
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 185 accggatcatcgac 198
||||||||||||||
Sbjct: 937 accggatcatcgac 950
>IS1356
Length = 1354
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 106 ggcacttcttcctt 119
||||||||||||||
Sbjct: 85 ggcacttcttcctt 72
>IS1246
Length = 1275
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 79 ggccgccgcgggcg 92
||||||||||||||
Sbjct: 507 ggccgccgcgggcg 494
>IS1237
Length = 899
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 72 ccgcctcggccgcc 85
||||||||||||||
Sbjct: 131 ccgcctcggccgcc 144
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_285_length_248_cov_1.25146_ID_5740
(248 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISBcen15 | IS3 | IS407 | Burkholderia cenocepacia | 38 | 0.005 |
| ISSaci1 | ISAzo13 | Streptomyces acidiscabies | 34 | 0.079 | |
| ISBvi4 | IS3 | IS3 | Burkholderia vietnamiensis | 34 | 0.079 |
| ISPa43 | Tn3 | Pseudomonas aeruginosa | 32 | 0.31 | |
| ISMtsp8 | IS21 | Methylobacterium sp. | 32 | 0.31 | |
| ISRm16 | IS4 | IS4Sa | Sinorhizobium meliloti | 32 | 0.31 |
| ISAzo3 | ISAs1 | Azoarcus sp. | 32 | 0.31 | |
| TnAs1 | Tn3 | Aeromonas salmonicida | 30 | 1.2 | |
| ISBusp5 | ISKra4 | ISAzba1 | Burkholderia sp. | 30 | 1.2 |
| ISPa36 | IS21 | Pseudomonas aeruginosa | 30 | 1.2 | |
| ISMra3 | IS256 | Methylobacterium radiotolerans | 30 | 1.2 | |
| ISMex3 | IS256 | Methylobacterium extorquens | 30 | 1.2 | |
| ISThsp13 | IS1380 | Thiomonas sp. | 30 | 1.2 | |
| ISAzo18 | IS3 | IS150 | Azoarcus sp. | 30 | 1.2 |
| ISCARN49 | IS21 | Metagenomic data from CARNOULES | 30 | 1.2 | |
| ISAzo11 | IS5 | IS5 | Azoarcus sp. | 30 | 1.2 |
| ISGdi14 | IS3 | IS51 | Gluconacetobacter diazotrophicus | 30 | 1.2 |
| ISFsp10 | IS66 | ISBst12 | Frankia sp. | 30 | 1.2 |
| ISJsp1 | IS3 | IS51 | Janthinobacterium sp. | 30 | 1.2 |
| ISAav4 | IS3 | IS3 | Acidovorax avenae | 30 | 1.2 |
| ISBvi3 | IS3 | IS3 | Burkholderia vietnamiensis | 30 | 1.2 |
| ISSav3 | IS701 | Streptomyces avermitilis | 30 | 1.2 | |
| ISSpo3 | IS1595 | ISNwi1 | Silicibacter pomeroyi | 30 | 1.2 |
| ISFsp3 | IS21 | Frankia sp. | 30 | 1.2 | |
| ISPpa1 | IS256 | Paracoccus pantotrophus | 30 | 1.2 | |
| ISPpu12 | ISL3 | Pseudomonas putida | 30 | 1.2 | |
| ISPst2 | ISL3 | - | Pseudomonas stutzeri | 30 | 1.2 |
| IS1396 | ISL3 | - | Serratia marcescens | 30 | 1.2 |
| ISAzs20 | IS66 | Azospirillum sp. | 28 | 4.9 | |
| ISAzba1 | ISKra4 | ISAzba1 | Azospirillum brasilense | 28 | 4.9 |
| ISPfr7 | ISL3 | Propionibacterium freudenreichii | 28 | 4.9 | |
| ISPfr4 | ISL3 | Propionibacterium freudenreichii | 28 | 4.9 | |
| ISAar42 | ISL3 | Arthrobacter arilaitensis | 28 | 4.9 | |
| ISMsi5 | IS3 | IS3 | Methylocella silvestris | 28 | 4.9 |
| ISMdi3 | IS3 | IS407 | Methylobacterium dichloromethanicum | 28 | 4.9 |
| ISMex13 | IS21 | Methylobacterium extorquens | 28 | 4.9 | |
| ISCARN104 | IS66 | Metagenomic data from CARNOULES | 28 | 4.9 | |
| ISAzo22 | IS110 | Azoarcus sp. | 28 | 4.9 | |
| ISCARN17 | IS21 | Metagenomic data from CARNOULES | 28 | 4.9 | |
| ISAli3 | IS630 | Azospirillum lipoferum | 28 | 4.9 | |
| ISRme15 | IS3 | IS51 | Ralstonia metallidurans | 28 | 4.9 |
| ISMmg5 | IS1595 | ISSod11 | Magnetospirillum magnetotacticum | 28 | 4.9 |
| ISGbe2 | IS3 | IS2 | Granulibacter bethesdensis | 28 | 4.9 |
| ISCc4 | IS110 | IS1111 | Caulobacter crescentus | 28 | 4.9 |
| ISPpu10 | IS110 | Pseudomonas putida | 28 | 4.9 | |
| ISCg2 | IS30 | - | Corynebacterium glutamicum | 28 | 4.9 |
| IS1629 | ISAs1 | - | Streptomyces sp. | 28 | 4.9 |
| IS1246 | IS5 | IS5 | Pseudomonas putida | 28 | 4.9 |
>ISBcen15
Length = 1239
Score = 38.2 bits (19), Expect = 0.005
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 90 tcggcccggcgccggcagc 108
|||||||||||||||||||
Sbjct: 651 tcggcccggcgccggcagc 669
>ISSaci1
Length = 1747
Score = 34.2 bits (17), Expect = 0.079
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 94 cccggcgccggcagcgg 110
|||||||||||||||||
Sbjct: 1458 cccggcgccggcagcgg 1474
>ISBvi4
Length = 1268
Score = 34.2 bits (17), Expect = 0.079
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 201 tgcgccagctcggcctc 217
|||||||||||||||||
Sbjct: 278 tgcgccagctcggcctc 262
>ISPa43
Length = 19903
Score = 32.2 bits (16), Expect = 0.31
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 181 tgcacaaggcctggcc 196
||||||||||||||||
Sbjct: 12837 tgcacaaggcctggcc 12852
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 104 gcagcggtcaaggc 117
||||||||||||||
Sbjct: 7505 gcagcggtcaaggc 7518
>ISMtsp8
Length = 2371
Score = 32.2 bits (16), Expect = 0.31
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 203 cgccagctcggcctcg 218
||||||||||||||||
Sbjct: 220 cgccagctcggcctcg 235
>ISRm16
Length = 1299
Score = 32.2 bits (16), Expect = 0.31
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 228 cgccgcaggtcaatcc 243
||||||||||||||||
Sbjct: 1209 cgccgcaggtcaatcc 1224
>ISAzo3
Length = 1282
Score = 32.2 bits (16), Expect = 0.31
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 118 gctcaccctggccggc 133
||||||||||||||||
Sbjct: 750 gctcaccctggccggc 765
>TnAs1
Length = 6694
Score = 30.2 bits (15), Expect = 1.2
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 206 cagctcggcctcgccgacg 224
|||||||||||||| ||||
Sbjct: 4801 cagctcggcctcgctgacg 4783
>ISBusp5
Length = 1533
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 154 cgttatcgaactcaa 168
|||||||||||||||
Sbjct: 113 cgttatcgaactcaa 99
>ISPa36
Length = 2468
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 209 ctcggcctcgccgac 223
|||||||||||||||
Sbjct: 1196 ctcggcctcgccgac 1182
>ISMra3
Length = 1398
Score = 30.2 bits (15), Expect = 1.2
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 86 ggcatcggcccggcgccgg 104
||||||||||||| |||||
Sbjct: 1085 ggcatcggcccggtgccgg 1067
>ISMex3
Length = 1399
Score = 30.2 bits (15), Expect = 1.2
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 86 ggcatcggcccggcgccgg 104
||||||||||||| |||||
Sbjct: 315 ggcatcggcccggtgccgg 333
>ISThsp13
Length = 1583
Score = 30.2 bits (15), Expect = 1.2
Identities = 21/23 (91%)
Strand = Plus / Minus
Query: 191 ctggccgtgttgcgccagctcgg 213
||||||| || ||||||||||||
Sbjct: 702 ctggccgggtcgcgccagctcgg 680
>ISAzo18
Length = 1471
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 201 tgcgccagctcggcc 215
|||||||||||||||
Sbjct: 188 tgcgccagctcggcc 174
>ISCARN49
Length = 2630
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 111 tcaaggcgctcaccc 125
|||||||||||||||
Sbjct: 1509 tcaaggcgctcaccc 1523
>ISAzo11
Length = 1280
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 138 ccatcgagcagatgg 152
|||||||||||||||
Sbjct: 978 ccatcgagcagatgg 992
>ISGdi14
Length = 1318
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 218 gccgacgatgcgccg 232
|||||||||||||||
Sbjct: 862 gccgacgatgcgccg 848
>ISFsp10
Length = 1713
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 122 accctggccggcctc 136
|||||||||||||||
Sbjct: 1451 accctggccggcctc 1465
>ISJsp1
Length = 1312
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 218 gccgacgatgcgccg 232
|||||||||||||||
Sbjct: 859 gccgacgatgcgccg 845
>ISAav4
Length = 1308
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 218 gccgacgatgcgccg 232
|||||||||||||||
Sbjct: 838 gccgacgatgcgccg 824
>ISBvi3
Length = 1282
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 218 gccgacgatgcgccg 232
|||||||||||||||
Sbjct: 865 gccgacgatgcgccg 851
>ISSav3
Length = 1400
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 41 cgggtggtggccatg 55
|||||||||||||||
Sbjct: 736 cgggtggtggccatg 722
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 46 ggtggccatggcca 59
||||||||||||||
Sbjct: 587 ggtggccatggcca 600
>ISSpo3
Length = 1947
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 46 ggtggccatggccac 60
|||||||||||||||
Sbjct: 1130 ggtggccatggccac 1144
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 46 ggtggccatggccac 60
|||||||||||||||
Sbjct: 1145 ggtggccatggccac 1131
>ISFsp3
Length = 2209
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 91 cggcccggcgccggc 105
|||||||||||||||
Sbjct: 1213 cggcccggcgccggc 1199
>ISPpa1
Length = 1376
Score = 30.2 bits (15), Expect = 1.2
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 86 ggcatcggcccggcgccgg 104
||||||||||||| |||||
Sbjct: 312 ggcatcggcccggtgccgg 330
>ISPpu12
Length = 3372
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 103 ggcagcggtcaaggc 117
|||||||||||||||
Sbjct: 2660 ggcagcggtcaaggc 2674
>ISPst2
Length = 2984
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 103 ggcagcggtcaaggc 117
|||||||||||||||
Sbjct: 2272 ggcagcggtcaaggc 2286
>IS1396
Length = 1771
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 103 ggcagcggtcaaggc 117
|||||||||||||||
Sbjct: 613 ggcagcggtcaaggc 627
>ISAzs20
Length = 2811
Score = 28.2 bits (14), Expect = 4.9
Identities = 20/22 (90%)
Strand = Plus / Minus
Query: 203 cgccagctcggcctcgccgacg 224
|||||| ||| |||||||||||
Sbjct: 1174 cgccagatcgtcctcgccgacg 1153
>ISAzba1
Length = 1465
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 122 accctggccggcct 135
||||||||||||||
Sbjct: 199 accctggccggcct 212
>ISPfr7
Length = 1423
Score = 28.2 bits (14), Expect = 4.9
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 60 cggccggtgtggcgccac 77
|||| |||||||||||||
Sbjct: 636 cggcgggtgtggcgccac 619
>ISPfr4
Length = 1415
Score = 28.2 bits (14), Expect = 4.9
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 60 cggccggtgtggcgccac 77
|||| |||||||||||||
Sbjct: 628 cggcgggtgtggcgccac 611
>ISAar42
Length = 1443
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 94 cccggcgccggcag 107
||||||||||||||
Sbjct: 934 cccggcgccggcag 921
>ISMsi5
Length = 1228
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 219 ccgacgatgcgccg 232
||||||||||||||
Sbjct: 818 ccgacgatgcgccg 805
>ISMdi3
Length = 1246
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 43 ggtggtggccatgg 56
||||||||||||||
Sbjct: 1199 ggtggtggccatgg 1186
>ISMex13
Length = 2359
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 142 cgagcagatggacg 155
||||||||||||||
Sbjct: 1758 cgagcagatggacg 1745
>ISCARN104
Length = 2483
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 113 aaggcgctcaccct 126
||||||||||||||
Sbjct: 2156 aaggcgctcaccct 2169
>ISAzo22
Length = 1763
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 215 ctcgccgacgatgc 228
||||||||||||||
Sbjct: 158 ctcgccgacgatgc 145
>ISCARN17
Length = 2539
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 43 ggtggtggccatgg 56
||||||||||||||
Sbjct: 2385 ggtggtggccatgg 2372
>ISAli3
Length = 1167
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 28 gacgccgcgcggtc 41
||||||||||||||
Sbjct: 225 gacgccgcgcggtc 238
>ISRme15
Length = 1325
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 218 gccgacgatgcgcc 231
||||||||||||||
Sbjct: 866 gccgacgatgcgcc 853
>ISMmg5
Length = 1101
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 43 ggtggtggccatgg 56
||||||||||||||
Sbjct: 59 ggtggtggccatgg 72
>ISGbe2
Length = 1352
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 202 gcgccagctcggcc 215
||||||||||||||
Sbjct: 376 gcgccagctcggcc 389
>ISCc4
Length = 1174
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 49 ggccatggccacgg 62
||||||||||||||
Sbjct: 1093 ggccatggccacgg 1106
>ISPpu10
Length = 1314
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 78 gcatcatgggcatc 91
||||||||||||||
Sbjct: 505 gcatcatgggcatc 492
>ISCg2
Length = 1636
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 148 gatggacgttatcg 161
||||||||||||||
Sbjct: 766 gatggacgttatcg 779
>IS1629
Length = 1462
Score = 28.2 bits (14), Expect = 4.9
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 92 ggcccggcgccggcagcg 109
||||||||||||| ||||
Sbjct: 649 ggcccggcgccgggagcg 632
>IS1246
Length = 1275
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 139 catcgagcagatgg 152
||||||||||||||
Sbjct: 977 catcgagcagatgg 990
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_286_length_248_cov_0.690058_ID_5742
(248 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISThsp19 | IS21 | Thiomonas sp. | 32 | 0.31 | |
| ISPst3 | IS21 | Pseudomonas stutzeri | 32 | 0.31 | |
| ISHor1 | IS3 | IS3 | Halothermothrix orenii | 32 | 0.31 |
| ISXc4 | Tn3 | - | Xanthomonas campestris | 32 | 0.31 |
| ISArsp6 | Tn3 | Arthrobacter sp. | 30 | 1.2 | |
| ISThsp5 | IS21 | Thiomonas sp. | 30 | 1.2 | |
| ISCARN9 | IS1634 | Metagenomic data from CARNOULES | 30 | 1.2 | |
| ISSpu2 | IS630 | Shewanella putrefaciens | 30 | 1.2 | |
| IS186B | IS4 | IS231 | Escherichia coli | 30 | 1.2 |
| IS186A | IS4 | IS231 | Escherichia coli | 30 | 1.2 |
| ISHru2 | IS200/IS605 | IS605 | Halovivax ruber | 28 | 4.9 |
| ISPa38 | Tn3 | Pseudomonas aeruginosa | 28 | 4.9 | |
| ISHwa10 | IS66 | ISBst12 | Haloquadratum walsbyi | 28 | 4.9 |
| ISMich1 | IS5 | IS5 | Microcoleus chthonoplastes | 28 | 4.9 |
| ISGka1 | IS5 | IS5 | Geobacillus kaustophilus | 28 | 4.9 |
| ISMex24 | ISL3 | Methylobacterium extorquens | 28 | 4.9 | |
| ISThsp12 | IS1634 | Thiomonas sp. | 28 | 4.9 | |
| ISCARN104 | IS66 | Metagenomic data from CARNOULES | 28 | 4.9 | |
| ISVme1 | IS66 | Vibrio metschnikovii | 28 | 4.9 | |
| ISShfr5 | IS21 | Shewanella frigidimarina | 28 | 4.9 | |
| ISPa31 | IS3 | IS3 | Pseudomonas aeruginosa | 28 | 4.9 |
| ISApr3 | IS1595 | ISSod11 | Alpha proteobacterium | 28 | 4.9 |
| ISEc20 | IS110 | Escherichia coli | 28 | 4.9 | |
| ISTth3 | IS1634 | Thermus thermophilus | 28 | 4.9 | |
| ISXac1 | IS4 | IS10 | Xanthomonas axonopodis | 28 | 4.9 |
| ISHma10 | IS5 | ISH1 | Haloarcula marismortui | 28 | 4.9 |
| IS613 | IS1380 | IS942 | Bacteroides fragilis | 28 | 4.9 |
| ISBaov1 | IS1380 | IS942 | Bacteroides ovatus | 28 | 4.9 |
| ISFac5 | IS481 | Ferroplasma acidarmanus | 28 | 4.9 | |
| ISPsy8 | IS3 | IS150 | Pseudomonas syringae | 28 | 4.9 |
| ISXaca1 | IS4 | IS10 | Xanthomonas campestris | 28 | 4.9 |
| ISSfl4 | IS110 | - | Shigella flexneri | 28 | 4.9 |
| IS711 | IS5 | IS427 | Brucella ovis | 28 | 4.9 |
| IS3000 | Tn3 | - | Escherichia coli | 28 | 4.9 |
| IS1326 | IS21 | - | Pseudomonas aeruginosa | 28 | 4.9 |
>ISThsp19
Length = 2657
Score = 32.2 bits (16), Expect = 0.31
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 217 gccagcgctgccgcgc 232
||||||||||||||||
Sbjct: 932 gccagcgctgccgcgc 947
>ISPst3
Length = 2606
Score = 32.2 bits (16), Expect = 0.31
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 217 gccagcgctgccgcgc 232
||||||||||||||||
Sbjct: 924 gccagcgctgccgcgc 939
>ISHor1
Length = 1225
Score = 32.2 bits (16), Expect = 0.31
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 10 tcacgctctatttctatatc 29
||||||||||||| ||||||
Sbjct: 289 tcacgctctatttttatatc 270
>ISXc4
Length = 6938
Score = 32.2 bits (16), Expect = 0.31
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 214 gctgccagcgctgccg 229
||||||||||||||||
Sbjct: 2154 gctgccagcgctgccg 2139
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 86 ccaggcgctggccg 99
||||||||||||||
Sbjct: 6212 ccaggcgctggccg 6225
>ISArsp6
Length = 26712
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 84 acccaggcgctggcc 98
|||||||||||||||
Sbjct: 14265 acccaggcgctggcc 14251
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 86 ccaggcgctggccg 99
||||||||||||||
Sbjct: 4976 ccaggcgctggccg 4989
>ISThsp5
Length = 2652
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 217 gccagcgctgccgcg 231
|||||||||||||||
Sbjct: 930 gccagcgctgccgcg 944
>ISCARN9
Length = 1931
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 136 accgcattcagcatc 150
|||||||||||||||
Sbjct: 1725 accgcattcagcatc 1739
>ISSpu2
Length = 1152
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 87 caggcgctggccgtt 101
|||||||||||||||
Sbjct: 340 caggcgctggccgtt 354
>IS186B
Length = 1338
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 109 gtaatgacatccccc 123
|||||||||||||||
Sbjct: 227 gtaatgacatccccc 213
>IS186A
Length = 1341
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 109 gtaatgacatccccc 123
|||||||||||||||
Sbjct: 229 gtaatgacatccccc 215
>ISHru2
Length = 1942
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 228 cgcgccttcggaat 241
||||||||||||||
Sbjct: 47 cgcgccttcggaat 34
>ISPa38
Length = 6455
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 85 cccaggcgctggcc 98
||||||||||||||
Sbjct: 917 cccaggcgctggcc 930
>ISHwa10
Length = 1598
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 198 cgggctcaaaccgt 211
||||||||||||||
Sbjct: 1552 cgggctcaaaccgt 1565
>ISMich1
Length = 1670
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 14 gctctatttctata 27
||||||||||||||
Sbjct: 762 gctctatttctata 749
>ISGka1
Length = 1537
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 3 ggatccgtcacgct 16
||||||||||||||
Sbjct: 804 ggatccgtcacgct 791
>ISMex24
Length = 1677
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 85 cccaggcgctggcc 98
||||||||||||||
Sbjct: 1002 cccaggcgctggcc 989
>ISThsp12
Length = 2004
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 49 cagtcatccagcaa 62
||||||||||||||
Sbjct: 1179 cagtcatccagcaa 1192
>ISCARN104
Length = 2483
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 177 cgactgcccggact 190
||||||||||||||
Sbjct: 422 cgactgcccggact 409
>ISVme1
Length = 2372
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 31 agctggctctggtt 44
||||||||||||||
Sbjct: 1070 agctggctctggtt 1057
>ISShfr5
Length = 2634
Score = 28.2 bits (14), Expect = 4.9
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 96 gccgttaatggctgtaat 113
||||||||||||| ||||
Sbjct: 2326 gccgttaatggctctaat 2309
>ISPa31
Length = 1671
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 60 caacgccttgtcct 73
||||||||||||||
Sbjct: 500 caacgccttgtcct 487
>ISApr3
Length = 1080
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 221 gcgctgccgcgcct 234
||||||||||||||
Sbjct: 233 gcgctgccgcgcct 246
>ISEc20
Length = 1459
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 224 ctgccgcgccttcg 237
||||||||||||||
Sbjct: 1122 ctgccgcgccttcg 1135
>ISTth3
Length = 1682
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 217 gccagcgctgccgc 230
||||||||||||||
Sbjct: 903 gccagcgctgccgc 890
>ISXac1
Length = 1350
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 86 ccaggcgctggccg 99
||||||||||||||
Sbjct: 1237 ccaggcgctggccg 1250
>ISHma10
Length = 935
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 39 ctggttccgccagt 52
||||||||||||||
Sbjct: 832 ctggttccgccagt 845
>IS613
Length = 1595
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 161 tatcatacccataa 174
||||||||||||||
Sbjct: 1448 tatcatacccataa 1435
>ISBaov1
Length = 1594
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 161 tatcatacccataa 174
||||||||||||||
Sbjct: 1447 tatcatacccataa 1434
>ISFac5
Length = 972
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 17 ctatttctatatcc 30
||||||||||||||
Sbjct: 258 ctatttctatatcc 245
>ISPsy8
Length = 1432
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 59 gcaacgccttgtcc 72
||||||||||||||
Sbjct: 1084 gcaacgccttgtcc 1071
>ISXaca1
Length = 1350
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 86 ccaggcgctggccg 99
||||||||||||||
Sbjct: 1237 ccaggcgctggccg 1250
>ISSfl4
Length = 1451
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 224 ctgccgcgccttcg 237
||||||||||||||
Sbjct: 1122 ctgccgcgccttcg 1135
>IS711
Length = 842
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 132 attgaccgcattca 145
||||||||||||||
Sbjct: 771 attgaccgcattca 784
>IS3000
Length = 3235
Score = 28.2 bits (14), Expect = 4.9
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 203 tcaaaccgtaggctgcca 220
||||||||||||| ||||
Sbjct: 955 tcaaaccgtaggcagcca 972
>IS1326
Length = 2470
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 144 cagcatcgggttgg 157
||||||||||||||
Sbjct: 817 cagcatcgggttgg 830
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_287_length_248_cov_0.678363_ID_5744
(248 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISNpe17 | IS5 | Natrinema pellirubrum | 36 | 0.020 | |
| ISNamo4 | IS5 | Natronomonas moolapensis | 36 | 0.020 | |
| ISHwa20 | IS5 | Haloquadratum walsbyi | 36 | 0.020 | |
| IS885 | IS630 | Ralstonia eutropha | 36 | 0.020 | |
| ISNpe16 | IS5 | Natrinema pellirubrum | 34 | 0.079 | |
| ISHma6 | IS5 | Haloarcula marismortui | 34 | 0.079 | |
| ISNov1 | ISKra4 | ISAzba1 | Novosphingobium sp. | 32 | 0.31 |
| ISHvo7 | IS5 | Haloferax volcanii | 32 | 0.31 | |
| ISKrh1 | IS481 | Kocuria rhizophila | 32 | 0.31 | |
| ISHti8 | IS5 | Halorhabdus tiamatea | 30 | 1.2 | |
| ISHti7 | IS5 | Halorhabdus tiamatea | 30 | 1.2 | |
| ISNpe19 | IS5 | Natrinema pellirubrum | 30 | 1.2 | |
| ISNpe18 | IS5 | Natrinema pellirubrum | 30 | 1.2 | |
| ISNpe2 | IS5 | Natrinema pellirubrum | 30 | 1.2 | |
| ISHla6 | IS5 | Halorubrum lacusprofundi | 30 | 1.2 | |
| ISRer1 | IS1380 | Rhodococcus erythropolis | 30 | 1.2 | |
| ISKpn12 | IS5 | IS427 | Klebsiella pneumoniae | 30 | 1.2 |
| ISButh2 | IS3 | IS2 | Burkholderia thailandensis | 30 | 1.2 |
| ISBcen6 | IS3 | IS2 | Burkholderia cenocepacia | 30 | 1.2 |
| ISH11 | IS5 | Halobacterium salinarum | 30 | 1.2 | |
| ISHwa14 | IS5 | Haloquadratum walsbyi | 30 | 1.2 | |
| ISAeme4 | IS4 | ISH8 | Aeromonas media | 28 | 4.9 |
| ISAeme3 | IS4 | ISH8 | Aeromonas media | 28 | 4.9 |
| ISHsr1 | IS200/IS605 | IS1341 | Halogranum salarium | 28 | 4.9 |
| ISMdi15 | IS200/IS605 | IS1341 | Methylobacterium dichloromethanicum | 28 | 4.9 |
| TnAs2 | Tn3 | Aeromonas salmonicida | 28 | 4.9 | |
| ISHtu3 | IS200/IS605 | IS1341 | Haloterrigena turkmenica | 28 | 4.9 |
| ISBj11 | IS21 | Bradyrhizobium japonicum | 28 | 4.9 | |
| ISHvo17 | IS200/IS605 | IS1341 | Haloferax volcanii | 28 | 4.9 |
| ISTvi1 | ISKra4 | ISKra4 | Thiocystis violascens | 28 | 4.9 |
| ISSiac4 | ISKra4 | ISKra4 | Singulisphaera acidiphila | 28 | 4.9 |
| ISAzs18 | IS66 | Azospirillum sp. | 28 | 4.9 | |
| ISAva4 | IS1634 | Anabaena variabilis | 28 | 4.9 | |
| ISMyma7 | IS1380 | - | Mycobacterium marinum | 28 | 4.9 |
| ISPa7 | IS1182 | Pseudomonas aeruginosa | 28 | 4.9 | |
| ISThsp21 | IS5 | IS427 | Thiomonas sp. | 28 | 4.9 |
| ISCARN101 | IS3 | IS3 | Metagenomic data from CARNOULES | 28 | 4.9 |
| ISBun2 | IS1595 | ISNwi1 | Bacteroides uniformis | 28 | 4.9 |
| ISRta2 | IS256 | Ralstonia taiwanensis | 28 | 4.9 | |
| ISRel3 | IS21 | Rhizobium etli | 28 | 4.9 | |
| ISFsp8 | IS3 | IS3 | Frankia sp. | 28 | 4.9 |
| ISOan3 | IS256 | Octadecabacter antarcticus | 28 | 4.9 | |
| ISApu1 | IS4 | ISH8 | Aeromonas punctata | 28 | 4.9 |
| IS116 | IS110 | - | Streptomyces clavuligerus | 28 | 4.9 |
>ISNpe17
Length = 1069
Score = 36.2 bits (18), Expect = 0.020
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 91 gcacgcccgaggccgcgt 108
||||||||||||||||||
Sbjct: 925 gcacgcccgaggccgcgt 942
>ISNamo4
Length = 1069
Score = 36.2 bits (18), Expect = 0.020
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 91 gcacgcccgaggccgcgt 108
||||||||||||||||||
Sbjct: 925 gcacgcccgaggccgcgt 942
>ISHwa20
Length = 1075
Score = 36.2 bits (18), Expect = 0.020
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 91 gcacgcccgaggccgcgt 108
||||||||||||||||||
Sbjct: 931 gcacgcccgaggccgcgt 948
>IS885
Length = 1100
Score = 36.2 bits (18), Expect = 0.020
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 22 cgcccagcgccgccgcca 39
||||||||||||||||||
Sbjct: 171 cgcccagcgccgccgcca 154
>ISNpe16
Length = 1069
Score = 34.2 bits (17), Expect = 0.079
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 92 cacgcccgaggccgcgt 108
|||||||||||||||||
Sbjct: 926 cacgcccgaggccgcgt 942
>ISHma6
Length = 1069
Score = 34.2 bits (17), Expect = 0.079
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 91 gcacgcccgaggccgcg 107
|||||||||||||||||
Sbjct: 925 gcacgcccgaggccgcg 941
>ISNov1
Length = 2277
Score = 32.2 bits (16), Expect = 0.31
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 18 ccgccgcccagcgccg 33
||||||||||||||||
Sbjct: 986 ccgccgcccagcgccg 1001
>ISHvo7
Length = 1069
Score = 32.2 bits (16), Expect = 0.31
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 94 cgcccgaggccgcgtt 109
||||||||||||||||
Sbjct: 928 cgcccgaggccgcgtt 943
>ISKrh1
Length = 2854
Score = 32.2 bits (16), Expect = 0.31
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 30 gccgccgccaaggcga 45
||||||||||||||||
Sbjct: 1592 gccgccgccaaggcga 1607
>ISHti8
Length = 1063
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 94 cgcccgaggccgcgt 108
|||||||||||||||
Sbjct: 928 cgcccgaggccgcgt 942
>ISHti7
Length = 1063
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 94 cgcccgaggccgcgt 108
|||||||||||||||
Sbjct: 928 cgcccgaggccgcgt 942
>ISNpe19
Length = 1063
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 94 cgcccgaggccgcgt 108
|||||||||||||||
Sbjct: 928 cgcccgaggccgcgt 942
>ISNpe18
Length = 1070
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 94 cgcccgaggccgcgt 108
|||||||||||||||
Sbjct: 928 cgcccgaggccgcgt 942
>ISNpe2
Length = 1069
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 94 cgcccgaggccgcgt 108
|||||||||||||||
Sbjct: 928 cgcccgaggccgcgt 942
>ISHla6
Length = 1069
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 94 cgcccgaggccgcgt 108
|||||||||||||||
Sbjct: 928 cgcccgaggccgcgt 942
>ISRer1
Length = 1687
Score = 30.2 bits (15), Expect = 1.2
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 222 gccgggcttctccgcggtg 240
||||| |||||||||||||
Sbjct: 232 gccggtcttctccgcggtg 214
>ISKpn12
Length = 842
Score = 30.2 bits (15), Expect = 1.2
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 7 cgcgtagcgacccgccgcc 25
||||||||||| |||||||
Sbjct: 755 cgcgtagcgacacgccgcc 737
>ISButh2
Length = 1336
Score = 30.2 bits (15), Expect = 1.2
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 18 ccgccgcccagcgccgccg 36
|||||| ||||||||||||
Sbjct: 140 ccgccgtccagcgccgccg 122
>ISBcen6
Length = 1335
Score = 30.2 bits (15), Expect = 1.2
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 18 ccgccgcccagcgccgccg 36
|||||| ||||||||||||
Sbjct: 139 ccgccgtccagcgccgccg 121
>ISH11
Length = 1068
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 95 gcccgaggccgcgtt 109
|||||||||||||||
Sbjct: 928 gcccgaggccgcgtt 942
>ISHwa14
Length = 1070
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 94 cgcccgaggccgcgt 108
|||||||||||||||
Sbjct: 928 cgcccgaggccgcgt 942
>ISAeme4
Length = 1383
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 149 ttcaatgccttgca 162
||||||||||||||
Sbjct: 288 ttcaatgccttgca 301
>ISAeme3
Length = 1384
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 149 ttcaatgccttgca 162
||||||||||||||
Sbjct: 289 ttcaatgccttgca 302
>ISHsr1
Length = 1448
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 191 ggcgttgcttgccc 204
||||||||||||||
Sbjct: 891 ggcgttgcttgccc 878
>ISMdi15
Length = 1344
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 25 ccagcgccgccgcc 38
||||||||||||||
Sbjct: 167 ccagcgccgccgcc 154
>TnAs2
Length = 8650
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 26 cagcgccgccgcca 39
||||||||||||||
Sbjct: 2012 cagcgccgccgcca 1999
>ISHtu3
Length = 1471
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 40 aggcgacaaccacc 53
||||||||||||||
Sbjct: 474 aggcgacaaccacc 487
>ISBj11
Length = 2649
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 30 gccgccgccaaggc 43
||||||||||||||
Sbjct: 272 gccgccgccaaggc 285
>ISHvo17
Length = 1508
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 40 aggcgacaaccacc 53
||||||||||||||
Sbjct: 451 aggcgacaaccacc 464
>ISTvi1
Length = 1417
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 28 gcgccgccgccaag 41
||||||||||||||
Sbjct: 985 gcgccgccgccaag 998
>ISSiac4
Length = 1519
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 32 cgccgccaaggcga 45
||||||||||||||
Sbjct: 271 cgccgccaaggcga 284
>ISAzs18
Length = 2633
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 30 gccgccgccaaggc 43
||||||||||||||
Sbjct: 1087 gccgccgccaaggc 1100
>ISAva4
Length = 1691
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 198 cttgcccatttgga 211
||||||||||||||
Sbjct: 1085 cttgcccatttgga 1098
>ISMyma7
Length = 1694
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 19 cgccgcccagcgcc 32
||||||||||||||
Sbjct: 1481 cgccgcccagcgcc 1468
>ISPa7
Length = 1669
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 212 ggattgccttgccg 225
||||||||||||||
Sbjct: 425 ggattgccttgccg 412
>ISThsp21
Length = 932
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 151 caatgccttgcatg 164
||||||||||||||
Sbjct: 388 caatgccttgcatg 375
>ISCARN101
Length = 1672
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 122 ggcgagaccgaggc 135
||||||||||||||
Sbjct: 552 ggcgagaccgaggc 565
>ISBun2
Length = 4739
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 65 gtcaaaaggtttcc 78
||||||||||||||
Sbjct: 2815 gtcaaaaggtttcc 2828
>ISRta2
Length = 1386
Score = 28.2 bits (14), Expect = 4.9
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 27 agcgccgccgccaaggcg 44
||||||||||||| ||||
Sbjct: 929 agcgccgccgccacggcg 912
>ISRel3
Length = 2308
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 82 ccgcctcgagcacg 95
||||||||||||||
Sbjct: 1484 ccgcctcgagcacg 1497
>ISFsp8
Length = 1297
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 115 ccgccccggcgaga 128
||||||||||||||
Sbjct: 731 ccgccccggcgaga 744
>ISOan3
Length = 1437
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 187 gggtggcgttgctt 200
||||||||||||||
Sbjct: 36 gggtggcgttgctt 49
>ISApu1
Length = 1384
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 149 ttcaatgccttgca 162
||||||||||||||
Sbjct: 289 ttcaatgccttgca 302
>IS116
Length = 1421
Score = 28.2 bits (14), Expect = 4.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 32 cgccgccaaggcga 45
||||||||||||||
Sbjct: 845 cgccgccaaggcga 858
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_288_length_247_cov_0.847059_ID_5746
(247 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISMno24 | IS91 | Methylobacterium nodulans | 34 | 0.078 | |
| ISRhru1 | IS1595 | ISSod11 | Rhodospirillum rubrum | 34 | 0.078 |
| ISMno25 | IS110 | IS1111 | Methylobacterium nodulans | 32 | 0.31 |
| ISRta5 | IS5 | IS903 | Cupriavidus taiwanensis | 32 | 0.31 |
| ISMsm11 | IS1380 | Mycobacterium smegmatis | 32 | 0.31 | |
| ISCgl1 | IS481 | Corynebacterium glutamicum | 32 | 0.31 | |
| IS5564 | IS481 | Corynebacterium striatum | 32 | 0.31 | |
| IS219 | IS1380 | - | Mycobacterium fortuitum | 32 | 0.31 |
| TnAs3 | Tn3 | Aeromonas salmonicida | 30 | 1.2 | |
| ISPso1 | IS256 | Paracoccus solventivorans | 30 | 1.2 | |
| ISRosp6 | IS5 | Roseobacter sp. | 30 | 1.2 | |
| ISScl2 | ISAzo13 | Streptomyces clavuligerus | 30 | 1.2 | |
| ISNosp1 | IS1380 | Nocardioides sp. | 30 | 1.2 | |
| ISAnsp6 | IS1182 | Anaeromyxobacter sp. | 30 | 1.2 | |
| ISCausp2 | IS1595 | ISNha5 | Caulobacter sp. | 30 | 1.2 |
| ISXau2 | IS3 | IS51 | Xanthobacter autotrophicus | 30 | 1.2 |
| ISSysp1 | IS1595 | IS1595 | Synechococcus sp | 30 | 1.2 |
| IS1647 | IS5 | IS427 | Streptomyces coelicolor | 30 | 1.2 |
| TnXo19 | Tn3 | Xanthomonas oryzae | 28 | 4.8 | |
| ISShdy2 | IS66 | Shigella dysenteriae | 28 | 4.8 | |
| ISMae40 | IS110 | Microcystis aeruginosa | 28 | 4.8 | |
| ISPa55 | IS110 | IS1111 | Pseudomonas aeruginosa | 28 | 4.8 |
| ISSiac5 | ISLre2 | Singulisphaera acidiphila | 28 | 4.8 | |
| ISSfr3 | ISKra4 | ISAzba1 | Sinorhizobium fredii | 28 | 4.8 |
| ISPa46 | IS256 | Pseudomonas aeruginosa | 28 | 4.8 | |
| ISRhsp8 | IS5 | IS903 | Rhodobacter sphaeroides | 28 | 4.8 |
| ISPpa7 | IS66 | Paracoccus pantotrophus | 28 | 4.8 | |
| ISRhsp7 | IS5 | Rhodobacter sphaeroides | 28 | 4.8 | |
| ISMra3 | IS256 | Methylobacterium radiotolerans | 28 | 4.8 | |
| ISMav7 | IS1380 | Mycobacterium avium | 28 | 4.8 | |
| ISMex19 | IS5 | IS427 | Methylobacterium extorquens | 28 | 4.8 |
| ISSpi3 | IS110 | IS1111 | Shewanella piezotolerans | 28 | 4.8 |
| ISCARN35 | IS4 | IS4 | Metagenomic data from CARNOULES | 28 | 4.8 |
| ISVei5 | IS5 | IS5 | Verminephrobacter eiseniae | 28 | 4.8 |
| ISStau5 | IS66 | ISBst12 | Stigmatella aurantiaca | 28 | 4.8 |
| ISStau3 | IS66 | ISBst12 | Stigmatella aurantiaca | 28 | 4.8 |
| ISGob2 | IS66 | ISBst12 | Gemmata obscuriglobus | 28 | 4.8 |
| ISDge9 | IS4 | IS10 | Deinococcus geothermalis | 28 | 4.8 |
| ISRta2 | IS256 | Ralstonia taiwanensis | 28 | 4.8 | |
| ISGNB1-1 | IS5 | IS903 | Uncultured bacterium | 28 | 4.8 |
| ISAzo7 | IS1595 | ISSod11 | Azoarcus sp. | 28 | 4.8 |
| IS401 | IS3 | IS51 | Burkholderia cepacia | 28 | 4.8 |
>ISMno24
Length = 2157
Score = 34.2 bits (17), Expect = 0.078
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 172 ggcctcgctcggcgcga 188
|||||||||||||||||
Sbjct: 1932 ggcctcgctcggcgcga 1916
>ISRhru1
Length = 1027
Score = 34.2 bits (17), Expect = 0.078
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 70 gaggcgcaggcggcccg 86
|||||||||||||||||
Sbjct: 640 gaggcgcaggcggcccg 624
>ISMno25
Length = 1518
Score = 32.2 bits (16), Expect = 0.31
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 181 cggcgcgacgctgcgc 196
||||||||||||||||
Sbjct: 214 cggcgcgacgctgcgc 199
>ISRta5
Length = 1130
Score = 32.2 bits (16), Expect = 0.31
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 125 tggaaagccgccagcg 140
||||||||||||||||
Sbjct: 888 tggaaagccgccagcg 903
>ISMsm11
Length = 1658
Score = 32.2 bits (16), Expect = 0.31
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 181 cggcgcgacgctgcgc 196
||||||||||||||||
Sbjct: 1358 cggcgcgacgctgcgc 1373
>ISCgl1
Length = 2435
Score = 32.2 bits (16), Expect = 0.31
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 129 aagccgccagcgcagg 144
||||||||||||||||
Sbjct: 1708 aagccgccagcgcagg 1693
>IS5564
Length = 2437
Score = 32.2 bits (16), Expect = 0.31
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 129 aagccgccagcgcagg 144
||||||||||||||||
Sbjct: 1707 aagccgccagcgcagg 1692
>IS219
Length = 1654
Score = 32.2 bits (16), Expect = 0.31
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 181 cggcgcgacgctgcgc 196
||||||||||||||||
Sbjct: 1355 cggcgcgacgctgcgc 1370
>TnAs3
Length = 18735
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 217 tacgccgatgcgctc 231
|||||||||||||||
Sbjct: 6017 tacgccgatgcgctc 6031
>ISPso1
Length = 1400
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 214 acgtacgccgatgcg 228
|||||||||||||||
Sbjct: 287 acgtacgccgatgcg 301
>ISRosp6
Length = 1357
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 223 gatgcgctcctcaag 237
|||||||||||||||
Sbjct: 142 gatgcgctcctcaag 128
>ISScl2
Length = 1819
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 78 ggcggcccgcaggcg 92
|||||||||||||||
Sbjct: 697 ggcggcccgcaggcg 711
>ISNosp1
Length = 1678
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 182 ggcgcgacgctgcgc 196
|||||||||||||||
Sbjct: 1375 ggcgcgacgctgcgc 1389
>ISAnsp6
Length = 1515
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 182 ggcgcgacgctgcgc 196
|||||||||||||||
Sbjct: 418 ggcgcgacgctgcgc 432
>ISCausp2
Length = 7915
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 70 gaggcgcaggcggcc 84
|||||||||||||||
Sbjct: 961 gaggcgcaggcggcc 947
>ISXau2
Length = 1238
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 73 gcgcaggcggcccgc 87
|||||||||||||||
Sbjct: 136 gcgcaggcggcccgc 150
>ISSysp1
Length = 1032
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 86 gcaggcgcgctggcc 100
|||||||||||||||
Sbjct: 169 gcaggcgcgctggcc 183
>IS1647
Length = 878
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 72 ggcgcaggcggcccg 86
|||||||||||||||
Sbjct: 583 ggcgcaggcggcccg 597
>TnXo19
Length = 18767
Score = 28.2 bits (14), Expect = 4.8
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 18 agccgcccagtaccggcg 35
||||| ||||||||||||
Sbjct: 10782 agccggccagtaccggcg 10765
>ISShdy2
Length = 2496
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 85 cgcaggcgcgctgg 98
||||||||||||||
Sbjct: 332 cgcaggcgcgctgg 319
>ISMae40
Length = 1300
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 158 atcatgcgtttacc 171
||||||||||||||
Sbjct: 975 atcatgcgtttacc 962
>ISPa55
Length = 1543
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 49 cgcggcgatgcgcg 62
||||||||||||||
Sbjct: 717 cgcggcgatgcgcg 704
>ISSiac5
Length = 1429
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 71 aggcgcaggcggcc 84
||||||||||||||
Sbjct: 274 aggcgcaggcggcc 287
>ISSfr3
Length = 1448
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 49 cgcggcgatgcgcg 62
||||||||||||||
Sbjct: 814 cgcggcgatgcgcg 827
>ISPa46
Length = 1329
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 106 ggcatcggtcaccg 119
||||||||||||||
Sbjct: 518 ggcatcggtcaccg 505
>ISRhsp8
Length = 1054
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 48 tcgcggcgatgcgc 61
||||||||||||||
Sbjct: 901 tcgcggcgatgcgc 888
>ISPpa7
Length = 2731
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 49 cgcggcgatgcgcg 62
||||||||||||||
Sbjct: 1263 cgcggcgatgcgcg 1250
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 49 cgcggcgatgcgcg 62
||||||||||||||
Sbjct: 2133 cgcggcgatgcgcg 2120
>ISRhsp7
Length = 1397
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 224 atgcgctcctcaag 237
||||||||||||||
Sbjct: 140 atgcgctcctcaag 127
>ISMra3
Length = 1398
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 91 cgcgctggccgtct 104
||||||||||||||
Sbjct: 390 cgcgctggccgtct 377
>ISMav7
Length = 1691
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 115 caccgcgtcctgga 128
||||||||||||||
Sbjct: 931 caccgcgtcctgga 918
>ISMex19
Length = 849
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 218 acgccgatgcgctc 231
||||||||||||||
Sbjct: 312 acgccgatgcgctc 325
>ISSpi3
Length = 1593
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 139 cgcaggggccagcc 152
||||||||||||||
Sbjct: 315 cgcaggggccagcc 302
>ISCARN35
Length = 1455
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 83 cccgcaggcgcgct 96
||||||||||||||
Sbjct: 572 cccgcaggcgcgct 585
>ISVei5
Length = 1620
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 103 ctgggcatcggtca 116
||||||||||||||
Sbjct: 1304 ctgggcatcggtca 1291
>ISStau5
Length = 1580
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 144 gggccagccgctgc 157
||||||||||||||
Sbjct: 245 gggccagccgctgc 232
>ISStau3
Length = 1579
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 144 gggccagccgctgc 157
||||||||||||||
Sbjct: 244 gggccagccgctgc 231
>ISGob2
Length = 1575
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 220 gccgatgcgctcct 233
||||||||||||||
Sbjct: 1028 gccgatgcgctcct 1041
>ISDge9
Length = 1127
Score = 28.2 bits (14), Expect = 4.8
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 181 cggcgcgacgctgcgcgt 198
||||| ||||||||||||
Sbjct: 718 cggcgtgacgctgcgcgt 735
>ISRta2
Length = 1386
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 108 catcggtcaccgcg 121
||||||||||||||
Sbjct: 796 catcggtcaccgcg 783
>ISGNB1-1
Length = 1047
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 26 agtaccggcgccag 39
||||||||||||||
Sbjct: 474 agtaccggcgccag 487
>ISAzo7
Length = 1044
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 213 aacgtacgccgatg 226
||||||||||||||
Sbjct: 978 aacgtacgccgatg 991
>IS401
Length = 1316
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 91 cgcgctggccgtct 104
||||||||||||||
Sbjct: 332 cgcgctggccgtct 319
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_289_length_247_cov_0.852941_ID_5748
(247 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISGau7 | IS21 | Gemmatimonas aurantiaca | 34 | 0.078 | |
| ISBrsp1 | IS3 | IS407 | Bradyrhizobium sp. | 32 | 0.31 |
| ISAs32 | IS3 | IS51 | Aeromonas salmonicida | 30 | 1.2 |
| ISAcma37 | IS701 | Acaryochloris marina | 30 | 1.2 | |
| ISNwi4 | IS1595 | ISNha5 | Nitrobacter winogradskyi | 30 | 1.2 |
| ISRba7 | ISAs1 | Rhodopirellula baltica | 30 | 1.2 | |
| ISPa42 | Tn3 | Pseudomonas aeruginosa | 30 | 1.2 | |
| ISKpn23 | IS1380 | Klebsiella pneumoniae | 28 | 4.8 | |
| ISHwa30 | IS1595 | ISH4 | Haloquadratum walsbyi | 28 | 4.8 |
| ISNpe28 | IS1595 | ISH4 | Natrinema pellirubrum | 28 | 4.8 |
| ISLdr1 | ISKra4 | ISKra4 | Legionella drancourtii | 28 | 4.8 |
| ISAzs36 | IS481 | Azospirillum sp. | 28 | 4.8 | |
| ISAzs21 | IS66 | Azospirillum sp. | 28 | 4.8 | |
| ISAzs7 | IS66 | ISBst12 | Azospirillum sp. | 28 | 4.8 |
| ISAzs3 | IS1380 | Azospirillum sp. | 28 | 4.8 | |
| ISVsp8 | IS1380 | Verrucomicrobium spinosum | 28 | 4.8 | |
| ISVsp19 | IS1380 | Verrucomicrobium spinosum | 28 | 4.8 | |
| ISSme2 | IS21 | Sinorhizobium medicae | 28 | 4.8 | |
| ISNmu2 | IS3 | IS407 | Nitrosospira multiformis | 28 | 4.8 |
| ISRhba1 | IS1595 | ISNwi1 | Rhodobacterales bacterium | 28 | 4.8 |
| IS882 | Tn3 | Ralstonia eutropha | 28 | 4.8 |
>ISGau7
Length = 2510
Score = 34.2 bits (17), Expect = 0.078
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 176 cgcacgcggctcttcgcgctg 196
|||||||||||||||| ||||
Sbjct: 640 cgcacgcggctcttcgtgctg 660
>ISBrsp1
Length = 1242
Score = 32.2 bits (16), Expect = 0.31
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 46 gcttgccgggcctgga 61
||||||||||||||||
Sbjct: 969 gcttgccgggcctgga 954
>ISAs32
Length = 1232
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 215 gggctgaccgtactg 229
|||||||||||||||
Sbjct: 210 gggctgaccgtactg 196
>ISAcma37
Length = 1218
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 92 attgcctatttgctg 106
|||||||||||||||
Sbjct: 992 attgcctatttgctg 1006
>ISNwi4
Length = 3671
Score = 30.2 bits (15), Expect = 1.2
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 184 gctcttcgcgctggtcggc 202
|||||||||||| ||||||
Sbjct: 271 gctcttcgcgctcgtcggc 253
>ISRba7
Length = 1302
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 175 ccgcacgcggctctt 189
|||||||||||||||
Sbjct: 499 ccgcacgcggctctt 513
>ISPa42
Length = 16941
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 102 tgctgcgtgtgcggc 116
|||||||||||||||
Sbjct: 11563 tgctgcgtgtgcggc 11577
>ISKpn23
Length = 1671
Score = 28.2 bits (14), Expect = 4.8
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 212 gtggggctgaccgtactg 229
||||||||||||| ||||
Sbjct: 591 gtggggctgaccgaactg 574
>ISHwa30
Length = 945
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 121 gcccgcttcggcga 134
||||||||||||||
Sbjct: 125 gcccgcttcggcga 138
>ISNpe28
Length = 944
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 121 gcccgcttcggcga 134
||||||||||||||
Sbjct: 124 gcccgcttcggcga 137
>ISLdr1
Length = 3746
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 91 cattgcctatttgc 104
||||||||||||||
Sbjct: 2606 cattgcctatttgc 2593
>ISAzs36
Length = 2622
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 51 ccgggcctggatcg 64
||||||||||||||
Sbjct: 1547 ccgggcctggatcg 1560
>ISAzs21
Length = 2598
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 153 atcgtcacgcagcc 166
||||||||||||||
Sbjct: 1233 atcgtcacgcagcc 1246
>ISAzs7
Length = 1455
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 191 gcgctggtcggcaa 204
||||||||||||||
Sbjct: 173 gcgctggtcggcaa 186
>ISAzs3
Length = 1613
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 190 cgcgctggtcggca 203
||||||||||||||
Sbjct: 1389 cgcgctggtcggca 1376
>ISVsp8
Length = 1802
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 93 ttgcctatttgctg 106
||||||||||||||
Sbjct: 1363 ttgcctatttgctg 1376
>ISVsp19
Length = 1802
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 93 ttgcctatttgctg 106
||||||||||||||
Sbjct: 1363 ttgcctatttgctg 1376
>ISSme2
Length = 2219
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 192 cgctggtcggcaac 205
||||||||||||||
Sbjct: 948 cgctggtcggcaac 935
>ISNmu2
Length = 1243
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 31 tcgcaaccgcctgg 44
||||||||||||||
Sbjct: 236 tcgcaaccgcctgg 223
>ISRhba1
Length = 2457
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 187 cttcgcgctggtcg 200
||||||||||||||
Sbjct: 549 cttcgcgctggtcg 562
>IS882
Length = 3363
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 106 gcgtgtgcggcgcg 119
||||||||||||||
Sbjct: 1819 gcgtgtgcggcgcg 1806
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_290_length_247_cov_1.28824_ID_5750
(247 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISRssp8 | IS1380 | Roseovarius sp. | 34 | 0.078 | |
| ISMtsp14 | IS5 | IS1031 | Methylobacterium sp. | 32 | 0.31 |
| ISAzo26 | IS91 | Azoarcus sp. | 32 | 0.31 | |
| IS3503 | IS256 | IS1249 | Corynebacterium jeikeium | 30 | 1.2 |
| ISStsp6 | IS5 | ISL2 | Streptomyces sp | 30 | 1.2 |
| ISAtu6 | IS66 | - | Agrobacterium tumefaciens | 30 | 1.2 |
| ISMsi3 | IS3 | IS407 | Methylocella silvestris | 30 | 1.2 |
| ISCARN43 | IS1595 | ISPna2 | Metagenomic data from CARNOULES | 30 | 1.2 |
| IS1131 | IS66 | - | Agrobacterium tumefaciens | 30 | 1.2 |
| ISMyma11 | ISNCY | ISDol1 | Mycobacterium marinum | 28 | 4.8 |
| ISSri1 | ISKra4 | ISKra4 | Streptomyces rimosus | 28 | 4.8 |
| ISKpn20 | IS3 | IS407 | Klebsiella pneumoniae | 28 | 4.8 |
| ISGau2 | IS3 | IS407 | Gemmatimonas aurantiaca | 28 | 4.8 |
| ISMtsp6 | IS110 | IS1111 | Methylobacterium sp. | 28 | 4.8 |
| ISMno13 | IS66 | Methylobacterium nodulans | 28 | 4.8 | |
| ISBli4 | IS1380 | Brevibacterium linens | 28 | 4.8 | |
| ISRssp9 | IS1380 | Roseovarius sp. | 28 | 4.8 | |
| ISAzo19 | IS66 | Azoarcus sp. | 28 | 4.8 | |
| ISCARN45 | IS256 | Metagenomic data from CARNOULES | 28 | 4.8 | |
| ISGdi10 | IS481 | Gluconacetobacter diazotrophicus | 28 | 4.8 | |
| ISBmu11 | IS3 | IS150 | Burkholderia multivorans | 28 | 4.8 |
| IS3H | IS3 | IS3 | Shigella dysenteriae | 28 | 4.8 |
| IS3F | IS3 | IS3 | Escherichia fergusonii | 28 | 4.8 |
| IS1136 | IS200/IS605 | IS1341 | Saccharopolyspora erythraea | 28 | 4.8 |
>ISRssp8
Length = 1614
Score = 34.2 bits (17), Expect = 0.078
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 226 gcgacccatgtggatca 242
|||||||||||||||||
Sbjct: 509 gcgacccatgtggatca 493
>ISMtsp14
Length = 860
Score = 32.2 bits (16), Expect = 0.31
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 170 gtgttgctgccgcggc 185
||||||||||||||||
Sbjct: 683 gtgttgctgccgcggc 698
>ISAzo26
Length = 2604
Score = 32.2 bits (16), Expect = 0.31
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 7 gcgcgaggtcgtggcg 22
||||||||||||||||
Sbjct: 907 gcgcgaggtcgtggcg 892
>IS3503
Length = 1380
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 226 gcgacccatgtggat 240
|||||||||||||||
Sbjct: 811 gcgacccatgtggat 797
>ISStsp6
Length = 1476
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 85 ctggtcgccaatgag 99
|||||||||||||||
Sbjct: 613 ctggtcgccaatgag 627
>ISAtu6
Length = 2798
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 79 cgcgcactggtcgcc 93
|||||||||||||||
Sbjct: 929 cgcgcactggtcgcc 943
>ISMsi3
Length = 1107
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 19 ggcgtcgtgctcgac 33
|||||||||||||||
Sbjct: 943 ggcgtcgtgctcgac 957
>ISCARN43
Length = 1086
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 176 ctgccgcggccagcc 190
|||||||||||||||
Sbjct: 557 ctgccgcggccagcc 571
>IS1131
Length = 2773
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 79 cgcgcactggtcgcc 93
|||||||||||||||
Sbjct: 926 cgcgcactggtcgcc 940
>ISMyma11
Length = 1584
Score = 28.2 bits (14), Expect = 4.8
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 45 ggttgcgcgcctcgatgg 62
|||||||||||| |||||
Sbjct: 25 ggttgcgcgccttgatgg 42
>ISSri1
Length = 2269
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 26 tgctcgacatgcgc 39
||||||||||||||
Sbjct: 836 tgctcgacatgcgc 823
>ISKpn20
Length = 1196
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 148 gatgcgcaccagcc 161
||||||||||||||
Sbjct: 499 gatgcgcaccagcc 486
>ISGau2
Length = 1197
Score = 28.2 bits (14), Expect = 4.8
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 152 cgcaccagcccgcggaag 169
|||| |||||||||||||
Sbjct: 619 cgcatcagcccgcggaag 636
>ISMtsp6
Length = 1495
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 1 gccgatgcgcgagg 14
||||||||||||||
Sbjct: 1248 gccgatgcgcgagg 1235
>ISMno13
Length = 2459
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 75 gggccgcgcactgg 88
||||||||||||||
Sbjct: 2265 gggccgcgcactgg 2278
>ISBli4
Length = 1713
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 19 ggcgtcgtgctcga 32
||||||||||||||
Sbjct: 1571 ggcgtcgtgctcga 1558
>ISRssp9
Length = 1716
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 23 tcgtgctcgacatg 36
||||||||||||||
Sbjct: 589 tcgtgctcgacatg 602
>ISAzo19
Length = 2423
Score = 28.2 bits (14), Expect = 4.8
Identities = 20/22 (90%)
Strand = Plus / Minus
Query: 43 ggggttgcgcgcctcgatggtc 64
||||||| || |||||||||||
Sbjct: 1171 ggggttgggcacctcgatggtc 1150
>ISCARN45
Length = 1430
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 91 gccaatgagcagcg 104
||||||||||||||
Sbjct: 392 gccaatgagcagcg 379
>ISGdi10
Length = 1229
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 9 gcgaggtcgtggcg 22
||||||||||||||
Sbjct: 464 gcgaggtcgtggcg 451
>ISBmu11
Length = 1626
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 85 ctggtcgccaatga 98
||||||||||||||
Sbjct: 418 ctggtcgccaatga 405
>IS3H
Length = 1261
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 169 ggtgttgctgccgc 182
||||||||||||||
Sbjct: 156 ggtgttgctgccgc 169
>IS3F
Length = 1258
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 169 ggtgttgctgccgc 182
||||||||||||||
Sbjct: 156 ggtgttgctgccgc 169
>IS1136
Length = 1402
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 18 tggcgtcgtgctcg 31
||||||||||||||
Sbjct: 918 tggcgtcgtgctcg 905
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_291_length_247_cov_0.847059_ID_5752
(247 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISRer2 | IS5 | IS427 | Rhodococcus erythropolis | 30 | 1.2 |
| ISAcfe1 | IS1182 | Acidimicrobium ferrooxidans | 30 | 1.2 | |
| ISRxy1 | IS1182 | Rubrobacter xylanophilus | 30 | 1.2 | |
| ISCARN24 | IS21 | Metagenomic data from CARNOULES | 30 | 1.2 | |
| ISCARN21 | IS630 | Metagenomic data from CARNOULES | 30 | 1.2 | |
| ISAeh1 | IS66 | Alkalilimnicola ehrlichei | 30 | 1.2 | |
| ISDpr2 | IS4 | ISPepr1 | Delta proteobacterium | 30 | 1.2 |
| ISMav1 | IS21 | - | Mycobacterium avium | 30 | 1.2 |
| IS1612 | IS21 | - | Mycobacterium avium | 30 | 1.2 |
| IS1071 | Tn3 | - | Alcaligenes sp | 30 | 1.2 |
| ISRel10 | ISNCY | IS1202 | Rhizobium etli | 28 | 4.8 |
| TnShfr1 | Tn3 | Shewanella frigidimarina | 28 | 4.8 | |
| ISPa43 | Tn3 | Pseudomonas aeruginosa | 28 | 4.8 | |
| ISAzs23 | IS3 | IS3 | Azospirillum sp. | 28 | 4.8 |
| ISAzs18 | IS66 | Azospirillum sp. | 28 | 4.8 | |
| ISStsp6 | IS5 | ISL2 | Streptomyces sp | 28 | 4.8 |
| ISVsp9 | IS1182 | Verrucomicrobium spinosum | 28 | 4.8 | |
| ISMpo9 | IS701 | Methylobacterium populi | 28 | 4.8 | |
| ISArsp6 | Tn3 | Arthrobacter sp. | 28 | 4.8 | |
| ISNml2 | IS1380 | Nakamurella multipartita | 28 | 4.8 | |
| ISAtu7 | IS110 | Agrobacterium tumefaciens | 28 | 4.8 | |
| ISMdi5 | IS3 | IS3 | Methylobacterium dichloromethanicum | 28 | 4.8 |
| ISMdi25 | IS30 | Methylobacterium dichloromethanicum | 28 | 4.8 | |
| ISMdi28 | IS701 | Methylobacterium dichloromethanicum | 28 | 4.8 | |
| ISMex30 | IS630 | Methylobacterium extorquens | 28 | 4.8 | |
| ISMex38 | Tn3 | Methylobacterium extorquens | 28 | 4.8 | |
| ISMex21 | IS630 | Methylobacterium extorquens | 28 | 4.8 | |
| ISMex4 | IS1380 | Methylobacterium extorquens | 28 | 4.8 | |
| ISAzo19 | IS66 | Azoarcus sp. | 28 | 4.8 | |
| ISCARN27 | IS256 | Metagenomic data from CARNOULES | 28 | 4.8 | |
| ISGdi17 | IS21 | Gluconacetobacter diazotrophicus | 28 | 4.8 | |
| ISFsp10 | IS66 | ISBst12 | Frankia sp. | 28 | 4.8 |
| ISRhosp6 | IS481 | Rhodococcus sp. | 28 | 4.8 | |
| ISRpa1 | IS1595 | ISNwi1 | Rhodopseudomonas palustris | 28 | 4.8 |
| ISRhosp2 | IS701 | Rhodococcus sp. | 28 | 4.8 | |
| ISMxa1 | IS3 | IS3 | Myxococcus xanthus | 28 | 4.8 |
| ISFsp3 | IS21 | Frankia sp. | 28 | 4.8 | |
| ISLxx1 | IS21 | Leifsonia xyli | 28 | 4.8 | |
| ISBlo12 | IS607 | Bifidobacterium longum | 28 | 4.8 | |
| ISMt3 | IS21 | - | Mycobacterium tuberculosis | 28 | 4.8 |
| ISMk1 | ISNCY | - | Mycobacterium kansasii | 28 | 4.8 |
| ISMbo1 | IS21 | - | Mycobacterium bovis | 28 | 4.8 |
| ISSme3 | IS66 | Sinorhizobium medicae | 28 | 4.8 | |
| IS1106 | IS5 | IS5 | Neisseria meningitidis | 28 | 4.8 |
| IS1066 | IS630 | - | Pseudomonas sp. | 28 | 4.8 |
>ISRer2
Length = 1003
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 203 aggcgtggtgggcgt 217
|||||||||||||||
Sbjct: 17 aggcgtggtgggcgt 31
>ISAcfe1
Length = 1772
Score = 30.2 bits (15), Expect = 1.2
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 27 ctcggcgaggtaggcggtg 45
||||||||||| |||||||
Sbjct: 756 ctcggcgaggtgggcggtg 738
>ISRxy1
Length = 1790
Score = 30.2 bits (15), Expect = 1.2
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 213 ggcgtagtcgcggacgcgg 231
||||| |||||||||||||
Sbjct: 725 ggcgtggtcgcggacgcgg 743
>ISCARN24
Length = 2778
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 181 gcgggcgtggccatg 195
|||||||||||||||
Sbjct: 758 gcgggcgtggccatg 744
>ISCARN21
Length = 1249
Score = 30.2 bits (15), Expect = 1.2
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 84 ggcggtgtgcacgacggcg 102
|||| ||||||||||||||
Sbjct: 720 ggcgctgtgcacgacggcg 738
>ISAeh1
Length = 2320
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 115 cagggcagcagggcg 129
|||||||||||||||
Sbjct: 2255 cagggcagcagggcg 2241
>ISDpr2
Length = 1549
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 188 tggccatgcagatga 202
|||||||||||||||
Sbjct: 899 tggccatgcagatga 885
>ISMav1
Length = 2536
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 41 cggtgtcgtcgagcg 55
|||||||||||||||
Sbjct: 2244 cggtgtcgtcgagcg 2230
>IS1612
Length = 2532
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 41 cggtgtcgtcgagcg 55
|||||||||||||||
Sbjct: 2240 cggtgtcgtcgagcg 2226
>IS1071
Length = 3201
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 180 ggcgggcgtggccat 194
|||||||||||||||
Sbjct: 2275 ggcgggcgtggccat 2289
>ISRel10
Length = 2528
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 21 ctgcagctcggcga 34
||||||||||||||
Sbjct: 1365 ctgcagctcggcga 1352
>TnShfr1
Length = 5131
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 105 gtcggtgccgcagg 118
||||||||||||||
Sbjct: 2577 gtcggtgccgcagg 2564
>ISPa43
Length = 19903
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 11 cgaaggcttgctgc 24
||||||||||||||
Sbjct: 9010 cgaaggcttgctgc 9023
>ISAzs23
Length = 1596
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 179 cggcgggcgtggcc 192
||||||||||||||
Sbjct: 698 cggcgggcgtggcc 685
>ISAzs18
Length = 2633
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 178 tcggcgggcgtggc 191
||||||||||||||
Sbjct: 903 tcggcgggcgtggc 890
>ISStsp6
Length = 1476
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 220 tcgcggacgcgggt 233
||||||||||||||
Sbjct: 436 tcgcggacgcgggt 449
>ISVsp9
Length = 1730
Score = 28.2 bits (14), Expect = 4.8
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 167 tgccatgggcctcggcgg 184
|||| |||||||||||||
Sbjct: 1017 tgccctgggcctcggcgg 1000
>ISMpo9
Length = 1413
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 39 ggcggtgtcgtcga 52
||||||||||||||
Sbjct: 366 ggcggtgtcgtcga 353
>ISArsp6
Length = 26712
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 227 cgcgggtggcgggg 240
||||||||||||||
Sbjct: 16336 cgcgggtggcgggg 16349
>ISNml2
Length = 1689
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 104 agtcggtgccgcag 117
||||||||||||||
Sbjct: 1388 agtcggtgccgcag 1375
>ISAtu7
Length = 1472
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 43 gtgtcgtcgagcgc 56
||||||||||||||
Sbjct: 864 gtgtcgtcgagcgc 851
>ISMdi5
Length = 1279
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 120 cagcagggcgaccg 133
||||||||||||||
Sbjct: 122 cagcagggcgaccg 109
>ISMdi25
Length = 1601
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 175 gcctcggcgggcgt 188
||||||||||||||
Sbjct: 1284 gcctcggcgggcgt 1271
>ISMdi28
Length = 1410
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 29 cggcgaggtaggcg 42
||||||||||||||
Sbjct: 1147 cggcgaggtaggcg 1134
>ISMex30
Length = 1041
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 48 gtcgagcgccagcc 61
||||||||||||||
Sbjct: 168 gtcgagcgccagcc 181
>ISMex38
Length = 3841
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 23 gcagctcggcgagg 36
||||||||||||||
Sbjct: 434 gcagctcggcgagg 447
>ISMex21
Length = 1040
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 48 gtcgagcgccagcc 61
||||||||||||||
Sbjct: 167 gtcgagcgccagcc 180
>ISMex4
Length = 1615
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 81 ggcggcggtgtgca 94
||||||||||||||
Sbjct: 1256 ggcggcggtgtgca 1243
>ISAzo19
Length = 2423
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 149 agcgttcgtaggcg 162
||||||||||||||
Sbjct: 1763 agcgttcgtaggcg 1750
>ISCARN27
Length = 1356
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 56 ccagccaggcctcg 69
||||||||||||||
Sbjct: 1229 ccagccaggcctcg 1216
>ISGdi17
Length = 2482
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 170 catgggcctcggcg 183
||||||||||||||
Sbjct: 998 catgggcctcggcg 985
>ISFsp10
Length = 1713
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 204 ggcgtggtgggcgt 217
||||||||||||||
Sbjct: 1165 ggcgtggtgggcgt 1152
>ISRhosp6
Length = 1091
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 226 acgcgggtggcggg 239
||||||||||||||
Sbjct: 1068 acgcgggtggcggg 1055
>ISRpa1
Length = 2091
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 130 accgggccgttggg 143
||||||||||||||
Sbjct: 154 accgggccgttggg 141
>ISRhosp2
Length = 1361
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 53 gcgccagccaggcc 66
||||||||||||||
Sbjct: 1295 gcgccagccaggcc 1308
>ISMxa1
Length = 1292
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 219 gtcgcggacgcggg 232
||||||||||||||
Sbjct: 510 gtcgcggacgcggg 523
>ISFsp3
Length = 2209
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 204 ggcgtggtgggcgt 217
||||||||||||||
Sbjct: 1823 ggcgtggtgggcgt 1810
>ISLxx1
Length = 2205
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 225 gacgcgggtggcgg 238
||||||||||||||
Sbjct: 452 gacgcgggtggcgg 465
>ISBlo12
Length = 2003
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 189 ggccatgcagatga 202
||||||||||||||
Sbjct: 1936 ggccatgcagatga 1949
>ISMt3
Length = 2213
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 52 agcgccagccaggc 65
||||||||||||||
Sbjct: 898 agcgccagccaggc 885
>ISMk1
Length = 947
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 178 tcggcgggcgtggc 191
||||||||||||||
Sbjct: 250 tcggcgggcgtggc 263
>ISMbo1
Length = 2212
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 52 agcgccagccaggc 65
||||||||||||||
Sbjct: 898 agcgccagccaggc 885
>ISSme3
Length = 3149
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 144 ggtgaagcgttcgt 157
||||||||||||||
Sbjct: 412 ggtgaagcgttcgt 399
>IS1106
Length = 1137
Score = 28.2 bits (14), Expect = 4.8
Identities = 20/22 (90%)
Strand = Plus / Minus
Query: 42 ggtgtcgtcgagcgccagccag 63
||||||||| |||||||||||
Sbjct: 290 ggtgtcgtcttgcgccagccag 269
>IS1066
Length = 1137
Score = 28.2 bits (14), Expect = 4.8
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 227 cgcgggtggcgggggcgt 244
|||||||||||| |||||
Sbjct: 70 cgcgggtggcggtggcgt 87
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_292_length_247_cov_0.841176_ID_5754
(247 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISAar6 | IS256 | Arthrobacter arilaitensis | 34 | 0.078 | |
| ISTco5 | ISNCY | ISDol1 | Thermobacillus composti | 32 | 0.31 |
| ISHth3 | IS4 | IS4Sa | Halococcus thailandensis | 30 | 1.2 |
| ISHth1 | ISH6 | Halococcus thailandensis | 30 | 1.2 | |
| ISXbo1 | IS5 | IS427 | Xenorhabdus bovienii | 30 | 1.2 |
| ISMex16 | IS3 | IS150 | Methylobacterium extorquens | 30 | 1.2 |
| ISGur6 | IS3 | IS3 | Geobacter uraniireducens | 30 | 1.2 |
| IS1490 | IS256 | - | Burkholderia cepacia | 30 | 1.2 |
| ISMipa1 | ISNCY | ISDol1 | Microthrix parvicella | 28 | 4.8 |
| ISAeme4 | IS4 | ISH8 | Aeromonas media | 28 | 4.8 |
| ISAeme3 | IS4 | ISH8 | Aeromonas media | 28 | 4.8 |
| ISMno29 | IS110 | Methylobacterium nodulans | 28 | 4.8 | |
| ISRel10 | ISNCY | IS1202 | Rhizobium etli | 28 | 4.8 |
| ISNma20 | IS607 | Natrialba magadii | 28 | 4.8 | |
| ISUnCu16 | IS66 | ISBst12 | Uncultured bacterium | 28 | 4.8 |
| ISAzs2 | IS21 | Azospirillum sp. | 28 | 4.8 | |
| ISRel19 | IS66 | Rhizobium etli | 28 | 4.8 | |
| ISCde1 | IS66 | Candidatus Desulforudis audaxviator | 28 | 4.8 | |
| ISAar34 | ISL3 | Arthrobacter arilaitensis | 28 | 4.8 | |
| ISMsm11 | IS1380 | Mycobacterium smegmatis | 28 | 4.8 | |
| ISMex36 | IS1182 | Methylobacterium extorquens | 28 | 4.8 | |
| ISCARN68 | IS256 | Metagenomic data from CARNOULES | 28 | 4.8 | |
| ISCARN58 | IS21 | Metagenomic data from CARNOULES | 28 | 4.8 | |
| ISAzo24 | IS5 | IS427 | Azoarcus sp. | 28 | 4.8 |
| ISCARN43 | IS1595 | ISPna2 | Metagenomic data from CARNOULES | 28 | 4.8 |
| ISBj7_B | IS66 | Bradyrhizobium japonicum | 28 | 4.8 | |
| ISApr5 | IS6 | Alpha proteobacterium | 28 | 4.8 | |
| ISSst2 | IS1595 | ISNha5 | Sagittula stellata | 28 | 4.8 |
| ISDge6 | IS5 | ISL2 | Deinococcus geothermalis | 28 | 4.8 |
| ISXau1 | IS3 | IS407 | Xanthobacter autotrophicus | 28 | 4.8 |
| ISAma1 | IS3 | IS3 | Alteromonas macleodii | 28 | 4.8 |
| ISSav2 | IS701 | Streptomyces avermitilis | 28 | 4.8 | |
| ISDar2 | IS4 | IS4Sa | Dechloromonas aromatica | 28 | 4.8 |
| ISXax1 | IS256 | Xanthomonas axonopodis | 28 | 4.8 | |
| ISAzo5 | IS4 | IS50 | Azoarcus sp. | 28 | 4.8 |
| IS71 | IS66 | - | Agrobacterium tumefaciens | 28 | 4.8 |
| IS219 | IS1380 | - | Mycobacterium fortuitum | 28 | 4.8 |
>ISAar6
Length = 1519
Score = 34.2 bits (17), Expect = 0.078
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 59 tggccatcggcgtcacc 75
|||||||||||||||||
Sbjct: 721 tggccatcggcgtcacc 737
>ISTco5
Length = 1616
Score = 32.2 bits (16), Expect = 0.31
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 83 ccttgatctcggcggt 98
||||||||||||||||
Sbjct: 748 ccttgatctcggcggt 733
>ISHth3
Length = 1472
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 97 gtcggcagataggcc 111
|||||||||||||||
Sbjct: 69 gtcggcagataggcc 83
>ISHth1
Length = 1445
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 38 tgatgatctcggtgc 52
|||||||||||||||
Sbjct: 968 tgatgatctcggtgc 954
>ISXbo1
Length = 891
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 137 aggcgtctttgagcg 151
|||||||||||||||
Sbjct: 315 aggcgtctttgagcg 329
>ISMex16
Length = 1511
Score = 30.2 bits (15), Expect = 1.2
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 225 catcaccagcgcctgatcg 243
||||||| |||||||||||
Sbjct: 1059 catcacccgcgcctgatcg 1041
>ISGur6
Length = 1667
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 101 gcagataggccttgc 115
|||||||||||||||
Sbjct: 1155 gcagataggccttgc 1141
>IS1490
Length = 1433
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 29 tcacgccgatgatga 43
|||||||||||||||
Sbjct: 712 tcacgccgatgatga 698
>ISMipa1
Length = 1629
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 225 catcaccagcgcct 238
||||||||||||||
Sbjct: 197 catcaccagcgcct 184
>ISAeme4
Length = 1383
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 222 tttcatcaccagcg 235
||||||||||||||
Sbjct: 1133 tttcatcaccagcg 1120
>ISAeme3
Length = 1384
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 222 tttcatcaccagcg 235
||||||||||||||
Sbjct: 1134 tttcatcaccagcg 1121
>ISMno29
Length = 1192
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 234 cgcctgatcgccaa 247
||||||||||||||
Sbjct: 1040 cgcctgatcgccaa 1053
>ISRel10
Length = 2528
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 101 gcagataggccttg 114
||||||||||||||
Sbjct: 733 gcagataggccttg 720
>ISNma20
Length = 2469
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 89 tctcggcggtcggc 102
||||||||||||||
Sbjct: 964 tctcggcggtcggc 951
>ISUnCu16
Length = 1532
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 70 gtcaccaacacgcc 83
||||||||||||||
Sbjct: 935 gtcaccaacacgcc 922
>ISAzs2
Length = 2609
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 159 gccgcgcaggaaga 172
||||||||||||||
Sbjct: 1295 gccgcgcaggaaga 1282
>ISRel19
Length = 2798
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 119 agcgcatgatctgc 132
||||||||||||||
Sbjct: 1356 agcgcatgatctgc 1369
>ISCde1
Length = 2422
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 198 gtgcaggatgtctt 211
||||||||||||||
Sbjct: 1534 gtgcaggatgtctt 1521
>ISAar34
Length = 1438
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 22 tcgcggctcacgcc 35
||||||||||||||
Sbjct: 35 tcgcggctcacgcc 22
>ISMsm11
Length = 1658
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 90 ctcggcggtcggca 103
||||||||||||||
Sbjct: 1169 ctcggcggtcggca 1156
>ISMex36
Length = 1467
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 155 cttcgccgcgcagg 168
||||||||||||||
Sbjct: 813 cttcgccgcgcagg 800
>ISCARN68
Length = 1419
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 72 caccaacacgccct 85
||||||||||||||
Sbjct: 660 caccaacacgccct 647
>ISCARN58
Length = 2436
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 32 cgccgatgatgatc 45
||||||||||||||
Sbjct: 1179 cgccgatgatgatc 1166
>ISAzo24
Length = 898
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 143 ctttgagcgccact 156
||||||||||||||
Sbjct: 205 ctttgagcgccact 192
>ISCARN43
Length = 1086
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 23 cgcggctcacgccg 36
||||||||||||||
Sbjct: 644 cgcggctcacgccg 657
>ISBj7_B
Length = 2865
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 231 cagcgcctgatcgc 244
||||||||||||||
Sbjct: 1051 cagcgcctgatcgc 1038
>ISApr5
Length = 806
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 155 cttcgccgcgcagg 168
||||||||||||||
Sbjct: 713 cttcgccgcgcagg 700
>ISSst2
Length = 3454
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 50 tgcccttcttggcc 63
||||||||||||||
Sbjct: 3168 tgcccttcttggcc 3181
>ISDge6
Length = 1117
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 234 cgcctgatcgccaa 247
||||||||||||||
Sbjct: 878 cgcctgatcgccaa 891
>ISXau1
Length = 1272
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 32 cgccgatgatgatc 45
||||||||||||||
Sbjct: 647 cgccgatgatgatc 660
>ISAma1
Length = 1261
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 17 tcggatcgcggctc 30
||||||||||||||
Sbjct: 928 tcggatcgcggctc 941
>ISSav2
Length = 1938
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 46 tcggtgcccttctt 59
||||||||||||||
Sbjct: 964 tcggtgcccttctt 951
>ISDar2
Length = 1322
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 230 ccagcgcctgatcg 243
||||||||||||||
Sbjct: 439 ccagcgcctgatcg 452
>ISXax1
Length = 1329
Score = 28.2 bits (14), Expect = 4.8
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 59 tggccatcggcgtcacca 76
||||||||||| ||||||
Sbjct: 641 tggccatcggcatcacca 658
>ISAzo5
Length = 1478
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 233 gcgcctgatcgcca 246
||||||||||||||
Sbjct: 1322 gcgcctgatcgcca 1335
>IS71
Length = 2386
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 165 caggaagagcttca 178
||||||||||||||
Sbjct: 1659 caggaagagcttca 1646
>IS219
Length = 1654
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 90 ctcggcggtcggca 103
||||||||||||||
Sbjct: 1167 ctcggcggtcggca 1154
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_293_length_247_cov_0.835294_ID_5756
(247 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISH8B | IS4 | ISH8 | Halobacterium sp | 34 | 0.078 |
| ISRce2 | IS1182 | Rhodospirillum centenum | 32 | 0.31 | |
| ISMpo7 | IS5 | IS427 | Methylobacterium populi | 32 | 0.31 |
| ISAzo22 | IS110 | Azoarcus sp. | 32 | 0.31 | |
| IS1650 | IS5 | IS427 | Streptomyces coelicolor | 32 | 0.31 |
| ISFK1 | IS21 | Bradyrhizobium japonicum | 30 | 1.2 | |
| ISFsp17 | ISKra4 | ISKra4 | Frankia sp. | 30 | 1.2 |
| ISMdi12 | IS110 | IS1111 | Methylobacterium dichloromethanicum | 30 | 1.2 |
| ISCausp2 | IS1595 | ISNha5 | Caulobacter sp. | 30 | 1.2 |
| ISLhe2 | ISL3 | Lactobacillus helveticus | 30 | 1.2 | |
| ISAzo3 | ISAs1 | Azoarcus sp. | 30 | 1.2 | |
| ISBlo5 | IS256 | Bifidobacterium longum | 30 | 1.2 | |
| ISPsy14 | IS21 | Pseudomonas syringae | 30 | 1.2 | |
| ISXo2 | IS1595 | IS1595 | Xanthomomas oryzae | 30 | 1.2 |
| IS1655 | IS30 | - | Neisseria meningitidis | 30 | 1.2 |
| ISPsy36 | IS1182 | Pseudomonas syringae | 28 | 4.8 | |
| ISHhu3 | IS200/IS605 | Halobacterium hubeiense | 28 | 4.8 | |
| ISNpe25 | IS66 | ISBst12 | Natrinema pellirubrum | 28 | 4.8 |
| ISStvi1 | ISAzo13 | Streptomyces violaceusniger | 28 | 4.8 | |
| ISNpe8 | IS66 | ISBst12 | Natrinema pellirubrum | 28 | 4.8 |
| ISNamo3 | IS66 | ISBst12 | Natronomonas moolapensis | 28 | 4.8 |
| ISEc49 | IS66 | Escherichia coli | 28 | 4.8 | |
| ISPa43 | Tn3 | Pseudomonas aeruginosa | 28 | 4.8 | |
| ISRel5 | IS21 | Rhizobium etli | 28 | 4.8 | |
| ISPpa7 | IS66 | Paracoccus pantotrophus | 28 | 4.8 | |
| ISHwa10 | IS66 | ISBst12 | Haloquadratum walsbyi | 28 | 4.8 |
| ISMtsp20 | IS5 | IS1031 | Methylobacterium sp. | 28 | 4.8 |
| ISMno9 | IS1182 | Methylobacterium nodulans | 28 | 4.8 | |
| ISMno8 | IS1182 | Methylobacterium nodulans | 28 | 4.8 | |
| ISPfr9 | IS30 | Propionibacterium freudenreichii | 28 | 4.8 | |
| ISAzo35 | IS701 | Azoarcus sp. | 28 | 4.8 | |
| ISAzo19 | IS66 | Azoarcus sp. | 28 | 4.8 | |
| ISCARN34 | IS1380 | Metagenomic data from CARNOULES | 28 | 4.8 | |
| ISCARN28 | IS110 | IS1111 | Metagenomic data from CARNOULES | 28 | 4.8 |
| ISAli20 | Tn3 | Azospirillum lipoferum | 28 | 4.8 | |
| ISMrsp5 | IS66 | ISBst12 | Marinobacter sp. | 28 | 4.8 |
| ISTesp2 | ISL3 | Terrabacter sp. | 28 | 4.8 | |
| ISApr2 | IS1595 | ISSod11 | Alpha proteobacterium | 28 | 4.8 |
| ISH10B | IS66 | ISBst12 | Halobacterium sp | 28 | 4.8 |
| ISH22 | IS200/IS605 | Halobacterium sp. | 28 | 4.8 | |
| ISSpo1 | IS110 | IS1111 | Silicibacter pomeroyi | 28 | 4.8 |
| ISBlo1 | IS21 | Bifidobacterium longum | 28 | 4.8 | |
| ISH27-3 | ISH3 | Halobacterium salinarum | 28 | 4.8 | |
| ISH10 | IS66 | ISBst12 | Halobacterium sp | 28 | 4.8 |
| IS1632 | IS256 | - | Bradyrhizobium japonicum | 28 | 4.8 |
>ISH8B
Length = 1403
Score = 34.2 bits (17), Expect = 0.078
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 27 tcgccgagtacttccgcgacc 47
|||| ||||||||||||||||
Sbjct: 348 tcgcggagtacttccgcgacc 368
>ISRce2
Length = 1528
Score = 32.2 bits (16), Expect = 0.31
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 10 cgcctacgccaccacc 25
||||||||||||||||
Sbjct: 1049 cgcctacgccaccacc 1064
Score = 28.2 bits (14), Expect = 4.8
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 108 aaatcgccctcgccatcg 125
||||||||||||| ||||
Sbjct: 1378 aaatcgccctcgcaatcg 1395
>ISMpo7
Length = 848
Score = 32.2 bits (16), Expect = 0.31
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 217 cggctcgatcaccgcc 232
||||||||||||||||
Sbjct: 128 cggctcgatcaccgcc 113
>ISAzo22
Length = 1763
Score = 32.2 bits (16), Expect = 0.31
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 76 ctcgctcacccgctacgcca 95
|||||||||||||| |||||
Sbjct: 1248 ctcgctcacccgcttcgcca 1267
Score = 32.2 bits (16), Expect = 0.31
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 93 ccatggcgcagcgcga 108
||||||||||||||||
Sbjct: 1423 ccatggcgcagcgcga 1408
>IS1650
Length = 898
Score = 32.2 bits (16), Expect = 0.31
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 217 cggctcgatcaccgcc 232
||||||||||||||||
Sbjct: 93 cggctcgatcaccgcc 78
>ISFK1
Length = 2592
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 19 caccaccatcgccga 33
|||||||||||||||
Sbjct: 1349 caccaccatcgccga 1363
>ISFsp17
Length = 1693
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 224 atcaccgccttctac 238
|||||||||||||||
Sbjct: 677 atcaccgccttctac 691
>ISMdi12
Length = 1371
Score = 30.2 bits (15), Expect = 1.2
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 164 ttcgcccgcctgccggcct 182
||||||| |||||||||||
Sbjct: 202 ttcgcccacctgccggcct 220
>ISCausp2
Length = 7915
Score = 30.2 bits (15), Expect = 1.2
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 190 acgcgccggcaacggcccc 208
||||||||||| |||||||
Sbjct: 4064 acgcgccggcaccggcccc 4082
>ISLhe2
Length = 1462
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 50 ggcaagcaagtactg 64
|||||||||||||||
Sbjct: 438 ggcaagcaagtactg 452
>ISAzo3
Length = 1282
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 198 gcaacggccccgacg 212
|||||||||||||||
Sbjct: 508 gcaacggccccgacg 494
>ISBlo5
Length = 1366
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 171 gcctgccggccttgg 185
|||||||||||||||
Sbjct: 338 gcctgccggccttgg 324
>ISPsy14
Length = 2597
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 74 gactcgctcacccgc 88
|||||||||||||||
Sbjct: 495 gactcgctcacccgc 509
>ISXo2
Length = 1070
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 217 cggctcgatcaccgc 231
|||||||||||||||
Sbjct: 653 cggctcgatcaccgc 639
>IS1655
Length = 1080
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 180 ccttggtcgaacgcg 194
|||||||||||||||
Sbjct: 648 ccttggtcgaacgcg 662
>ISPsy36
Length = 1658
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 156 cctcggtgttcgcc 169
||||||||||||||
Sbjct: 100 cctcggtgttcgcc 87
>ISHhu3
Length = 1686
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 163 gttcgcccgcctgc 176
||||||||||||||
Sbjct: 1315 gttcgcccgcctgc 1328
>ISNpe25
Length = 1626
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 222 cgatcaccgccttc 235
||||||||||||||
Sbjct: 742 cgatcaccgccttc 755
>ISStvi1
Length = 1738
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 190 acgcgccggcaacg 203
||||||||||||||
Sbjct: 1286 acgcgccggcaacg 1299
>ISNpe8
Length = 1650
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 222 cgatcaccgccttc 235
||||||||||||||
Sbjct: 766 cgatcaccgccttc 779
>ISNamo3
Length = 1546
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 222 cgatcaccgccttc 235
||||||||||||||
Sbjct: 662 cgatcaccgccttc 675
>ISEc49
Length = 2766
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 209 gacgaaggcggctc 222
||||||||||||||
Sbjct: 529 gacgaaggcggctc 516
>ISPa43
Length = 19903
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 21 ccaccatcgccgag 34
||||||||||||||
Sbjct: 9186 ccaccatcgccgag 9199
>ISRel5
Length = 2587
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 232 cttctacaccgtgc 245
||||||||||||||
Sbjct: 1156 cttctacaccgtgc 1169
>ISPpa7
Length = 2731
Score = 28.2 bits (14), Expect = 4.8
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 178 ggccttggtcgaacgcgc 195
||||| ||||||||||||
Sbjct: 1035 ggcctcggtcgaacgcgc 1052
>ISHwa10
Length = 1598
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 222 cgatcaccgccttc 235
||||||||||||||
Sbjct: 714 cgatcaccgccttc 727
>ISMtsp20
Length = 926
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 193 cgccggcaacggcc 206
||||||||||||||
Sbjct: 800 cgccggcaacggcc 787
>ISMno9
Length = 1548
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 10 cgcctacgccacca 23
||||||||||||||
Sbjct: 739 cgcctacgccacca 752
>ISMno8
Length = 1466
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 22 caccatcgccgagt 35
||||||||||||||
Sbjct: 368 caccatcgccgagt 381
>ISPfr9
Length = 1484
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 180 ccttggtcgaacgc 193
||||||||||||||
Sbjct: 999 ccttggtcgaacgc 1012
>ISAzo35
Length = 1451
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 44 gaccagggcaagca 57
||||||||||||||
Sbjct: 1329 gaccagggcaagca 1316
>ISAzo19
Length = 2423
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 160 ggtgttcgcccgcc 173
||||||||||||||
Sbjct: 142 ggtgttcgcccgcc 155
>ISCARN34
Length = 1714
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 93 ccatggcgcagcgc 106
||||||||||||||
Sbjct: 714 ccatggcgcagcgc 727
>ISCARN28
Length = 1419
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 216 gcggctcgatcacc 229
||||||||||||||
Sbjct: 948 gcggctcgatcacc 961
>ISAli20
Length = 3828
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 219 gctcgatcaccgcc 232
||||||||||||||
Sbjct: 1297 gctcgatcaccgcc 1284
>ISMrsp5
Length = 1738
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 57 aagtactgctgatc 70
||||||||||||||
Sbjct: 1232 aagtactgctgatc 1245
>ISTesp2
Length = 1397
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 110 atcgccctcgccat 123
||||||||||||||
Sbjct: 1315 atcgccctcgccat 1328
>ISApr2
Length = 1029
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 115 cctcgccatcggcg 128
||||||||||||||
Sbjct: 957 cctcgccatcggcg 970
>ISH10B
Length = 1629
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 222 cgatcaccgccttc 235
||||||||||||||
Sbjct: 745 cgatcaccgccttc 758
>ISH22
Length = 1700
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 163 gttcgcccgcctgc 176
||||||||||||||
Sbjct: 1329 gttcgcccgcctgc 1342
>ISSpo1
Length = 1363
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 75 actcgctcacccgc 88
||||||||||||||
Sbjct: 170 actcgctcacccgc 157
>ISBlo1
Length = 2590
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 73 ggactcgctcaccc 86
||||||||||||||
Sbjct: 1564 ggactcgctcaccc 1577
>ISH27-3
Length = 1389
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 116 ctcgccatcggcga 129
||||||||||||||
Sbjct: 245 ctcgccatcggcga 258
>ISH10
Length = 1584
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 222 cgatcaccgccttc 235
||||||||||||||
Sbjct: 700 cgatcaccgccttc 713
>IS1632
Length = 1394
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 116 ctcgccatcggcga 129
||||||||||||||
Sbjct: 815 ctcgccatcggcga 828
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_294_length_247_cov_0.823529_ID_5758
(247 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISAli20 | Tn3 | Azospirillum lipoferum | 34 | 0.078 | |
| ISLxc1 | IS21 | Leifsonia xyli | 34 | 0.078 | |
| ISRsl1 | ISLre2 | Runella slithyformis | 32 | 0.31 | |
| ISSpn3 | ISL3 | Streptococcus pneumoniae | 30 | 1.2 | |
| ISPfr18 | ISL3 | Propionibacterium freudenreichii | 30 | 1.2 | |
| ISAzo15 | IS66 | Azoarcus sp. | 30 | 1.2 | |
| ISAzo8 | ISAs1 | Azoarcus sp. | 30 | 1.2 | |
| IS866 | IS66 | - | Agrobacterium tumefaciens | 30 | 1.2 |
| TnAs3 | Tn3 | Aeromonas salmonicida | 28 | 4.8 | |
| ISMdi15 | IS200/IS605 | IS1341 | Methylobacterium dichloromethanicum | 28 | 4.8 |
| ISHlsp1 | IS200/IS605 | IS605 | Halopiger sp. | 28 | 4.8 |
| ISHgi1 | IS200/IS605 | IS605 | Haloferax gibbonsii | 28 | 4.8 |
| ISHvo24 | IS200/IS605 | IS1341 | Haloferax volcanii | 28 | 4.8 |
| ISH34 | IS200/IS605 | Halobacterium salinarum | 28 | 4.8 | |
| ISNpe23 | IS1595 | ISH4 | Natrinema pellirubrum | 28 | 4.8 |
| ISPa38 | Tn3 | Pseudomonas aeruginosa | 28 | 4.8 | |
| ISRosp5 | IS3 | IS407 | Roseobacter sp. | 28 | 4.8 |
| ISGdi10 | IS481 | Gluconacetobacter diazotrophicus | 28 | 4.8 | |
| ISGob3 | IS66 | ISBst12 | Gemmata obscuriglobus | 28 | 4.8 |
| ISDds6 | IS701 | Deinococcus deserti | 28 | 4.8 | |
| ISAbo1 | IS3 | IS51 | Alcanivorax borkumensis | 28 | 4.8 |
| ISFsp3 | IS21 | Frankia sp. | 28 | 4.8 | |
| ISBlo8 | IS256 | Bifidobacterium longum | 28 | 4.8 | |
| IS4811 | IS5 | IS1031 | Streptomyces lividans | 28 | 4.8 |
| IS1247 | IS1380 | - | Xanthobacter autotrophicus | 28 | 4.8 |
>ISAli20
Length = 3828
Score = 34.2 bits (17), Expect = 0.078
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 86 ggtgggcgaggccatgc 102
|||||||||||||||||
Sbjct: 1596 ggtgggcgaggccatgc 1580
>ISLxc1
Length = 3533
Score = 34.2 bits (17), Expect = 0.078
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 152 tgcagagcagatcgacg 168
|||||||||||||||||
Sbjct: 3265 tgcagagcagatcgacg 3249
>ISRsl1
Length = 1302
Score = 32.2 bits (16), Expect = 0.31
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 122 cgaggtgctcaacgcg 137
||||||||||||||||
Sbjct: 1178 cgaggtgctcaacgcg 1193
>ISSpn3
Length = 1479
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 139 gcttctagtatattg 153
|||||||||||||||
Sbjct: 139 gcttctagtatattg 125
>ISPfr18
Length = 1437
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 75 cggctcgacgcggtg 89
|||||||||||||||
Sbjct: 1035 cggctcgacgcggtg 1049
>ISAzo15
Length = 2441
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 69 gtcgatcggctcgac 83
|||||||||||||||
Sbjct: 446 gtcgatcggctcgac 432
>ISAzo8
Length = 1261
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 66 gcggtcgatcggctc 80
|||||||||||||||
Sbjct: 856 gcggtcgatcggctc 870
>IS866
Length = 2716
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 64 gtgcggtcgatcggc 78
|||||||||||||||
Sbjct: 1692 gtgcggtcgatcggc 1678
>TnAs3
Length = 18735
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 38 gcagcggctgtcga 51
||||||||||||||
Sbjct: 11751 gcagcggctgtcga 11764
>ISMdi15
Length = 1344
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 125 ggtgctcaacgcgc 138
||||||||||||||
Sbjct: 313 ggtgctcaacgcgc 326
>ISHlsp1
Length = 1853
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 16 ccgaagtggtcggc 29
||||||||||||||
Sbjct: 318 ccgaagtggtcggc 331
>ISHgi1
Length = 1870
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 16 ccgaagtggtcggc 29
||||||||||||||
Sbjct: 319 ccgaagtggtcggc 332
>ISHvo24
Length = 1462
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 16 ccgaagtggtcggc 29
||||||||||||||
Sbjct: 1086 ccgaagtggtcggc 1099
>ISH34
Length = 1853
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 16 ccgaagtggtcggc 29
||||||||||||||
Sbjct: 318 ccgaagtggtcggc 331
>ISNpe23
Length = 1001
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 48 tcgaaagacgtcag 61
||||||||||||||
Sbjct: 717 tcgaaagacgtcag 704
>ISPa38
Length = 6455
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 157 agcagatcgacgtc 170
||||||||||||||
Sbjct: 3071 agcagatcgacgtc 3084
>ISRosp5
Length = 1217
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 130 tcaacgcgcgcttc 143
||||||||||||||
Sbjct: 999 tcaacgcgcgcttc 1012
>ISGdi10
Length = 1229
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 75 cggctcgacgcggt 88
||||||||||||||
Sbjct: 324 cggctcgacgcggt 311
>ISGob3
Length = 1597
Score = 28.2 bits (14), Expect = 4.8
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 120 accgaggtgctcaacgcg 137
||||||||||||| ||||
Sbjct: 870 accgaggtgctcaccgcg 853
>ISDds6
Length = 2207
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 153 gcagagcagatcga 166
||||||||||||||
Sbjct: 263 gcagagcagatcga 276
>ISAbo1
Length = 1229
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 32 tatcctgcagcggc 45
||||||||||||||
Sbjct: 680 tatcctgcagcggc 693
>ISFsp3
Length = 2209
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 101 gcgccacacccagc 114
||||||||||||||
Sbjct: 163 gcgccacacccagc 150
>ISBlo8
Length = 1408
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 80 cgacgcggtgggcg 93
||||||||||||||
Sbjct: 862 cgacgcggtgggcg 875
>IS4811
Length = 5396
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 68 ggtcgatcggctcg 81
||||||||||||||
Sbjct: 4543 ggtcgatcggctcg 4530
>IS1247
Length = 1672
Score = 28.2 bits (14), Expect = 4.8
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 67 cggtcgatcggctcgacg 84
||||| ||||||||||||
Sbjct: 289 cggtccatcggctcgacg 306
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_295_length_246_cov_1.28402_ID_5760
(246 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISMdi7 | IS21 | Methylobacterium dichloromethanicum | 36 | 0.020 | |
| ISMex8 | IS21 | Methylobacterium extorquens | 36 | 0.020 | |
| ISAav4 | IS3 | IS3 | Acidovorax avenae | 32 | 0.31 |
| TnAs3 | Tn3 | Aeromonas salmonicida | 30 | 1.2 | |
| ISHru2 | IS200/IS605 | IS605 | Halovivax ruber | 30 | 1.2 |
| ISAzo18 | IS3 | IS150 | Azoarcus sp. | 30 | 1.2 |
| ISAli17 | IS5 | IS903 | Azospirillum lipoferum | 30 | 1.2 |
| ISRru1 | IS3 | IS51 | Rhodococcus ruber | 30 | 1.2 |
| ISLdl2 | IS256 | - | Lactobacillus delbrueckii | 30 | 1.2 |
| ISHwa22 | IS200/IS605 | IS1341 | Haloquadratum walsbyi | 28 | 4.8 |
| TnAs1 | Tn3 | Aeromonas salmonicida | 28 | 4.8 | |
| ISNamo18 | IS200/IS605 | IS605 | Natronomonas moolapensis | 28 | 4.8 |
| ISHme1 | IS6 | Haloferax mediterranei | 28 | 4.8 | |
| ISNml4 | IS256 | Nakamurella multipartita | 28 | 4.8 | |
| ISHvo8 | IS630 | Haloferax volcanii | 28 | 4.8 | |
| ISNph10 | IS200/IS605 | IS1341 | Natronomonas pharaonis | 28 | 4.8 |
| ISPfr3 | ISL3 | Propionibacterium freudenreichii | 28 | 4.8 | |
| ISRer1 | IS1380 | Rhodococcus erythropolis | 28 | 4.8 | |
| ISMex25 | IS6 | Methylobacterium extorquens | 28 | 4.8 | |
| ISAnsp4 | IS21 | Anaeromyxobacter sp. | 28 | 4.8 | |
| ISXau4 | IS66 | Xanthobacter autotrophicus | 28 | 4.8 | |
| ISAzca2 | IS66 | Azorhizobium caulinodans | 28 | 4.8 | |
| ISGdi17 | IS21 | Gluconacetobacter diazotrophicus | 28 | 4.8 | |
| ISLxc1 | IS21 | Leifsonia xyli | 28 | 4.8 | |
| ISMsm7 | IS3 | IS3 | Mycobacterium smegmatis | 28 | 4.8 |
| ISMsm4 | ISL3 | Mycobacterium smegmatis | 28 | 4.8 | |
| ISEc22 | IS66 | Escherichia coli | 28 | 4.8 | |
| ISPla1 | IS1595 | ISPna2 | Parvibaculum lavamentivorans | 28 | 4.8 |
| ISRtr2 | IS3 | IS51 | Rhizobium tropici | 28 | 4.8 |
| ISPps1 | IS91 | - | Pseudomonas huttiensis | 28 | 4.8 |
| IS1602 | IS607 | Mycobacterium tuberculosis | 28 | 4.8 | |
| IS1404 | IS3 | IS407 | Xanthomonas campestris | 28 | 4.8 |
>ISMdi7
Length = 2568
Score = 36.2 bits (18), Expect = 0.020
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 30 ttgaccagcccctcgacc 47
||||||||||||||||||
Sbjct: 838 ttgaccagcccctcgacc 821
>ISMex8
Length = 2597
Score = 36.2 bits (18), Expect = 0.020
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 30 ttgaccagcccctcgacc 47
||||||||||||||||||
Sbjct: 839 ttgaccagcccctcgacc 822
>ISAav4
Length = 1308
Score = 32.2 bits (16), Expect = 0.31
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 103 gcaactcgtgctggcg 118
||||||||||||||||
Sbjct: 865 gcaactcgtgctggcg 880
>TnAs3
Length = 18735
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 76 ccggcagcatcatcg 90
|||||||||||||||
Sbjct: 7090 ccggcagcatcatcg 7076
>ISHru2
Length = 1942
Score = 30.2 bits (15), Expect = 1.2
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 224 cgactcgatcatgcccttc 242
|||||| ||||||||||||
Sbjct: 1480 cgactccatcatgcccttc 1462
>ISAzo18
Length = 1471
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 49 cgcgcaccgcatcga 63
|||||||||||||||
Sbjct: 882 cgcgcaccgcatcga 868
>ISAli17
Length = 1109
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 203 gatgtggcggtcgcg 217
|||||||||||||||
Sbjct: 835 gatgtggcggtcgcg 821
>ISRru1
Length = 1345
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 128 gccttcgtcgtcatg 142
|||||||||||||||
Sbjct: 899 gccttcgtcgtcatg 885
>ISLdl2
Length = 1367
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 222 atcgactcgatcatg 236
|||||||||||||||
Sbjct: 1136 atcgactcgatcatg 1122
>ISHwa22
Length = 1541
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 177 tcgaccttggcatt 190
||||||||||||||
Sbjct: 781 tcgaccttggcatt 794
>TnAs1
Length = 6694
Score = 28.2 bits (14), Expect = 4.8
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 72 aaggccggcagcatcatc 89
||||||||||||| ||||
Sbjct: 4292 aaggccggcagcagcatc 4309
>ISNamo18
Length = 1885
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 125 cttgccttcgtcgt 138
||||||||||||||
Sbjct: 1204 cttgccttcgtcgt 1191
>ISHme1
Length = 740
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 72 aaggccggcagcat 85
||||||||||||||
Sbjct: 174 aaggccggcagcat 161
>ISNml4
Length = 1462
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 55 ccgcatcgatgccg 68
||||||||||||||
Sbjct: 172 ccgcatcgatgccg 185
>ISHvo8
Length = 1150
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 128 gccttcgtcgtcat 141
||||||||||||||
Sbjct: 588 gccttcgtcgtcat 575
>ISNph10
Length = 1359
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 177 tcgaccttggcatt 190
||||||||||||||
Sbjct: 691 tcgaccttggcatt 704
>ISPfr3
Length = 1457
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 3 tcgtcgatcagcac 16
||||||||||||||
Sbjct: 604 tcgtcgatcagcac 591
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 221 catcgactcgatca 234
||||||||||||||
Sbjct: 1193 catcgactcgatca 1206
>ISRer1
Length = 1687
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 6 tcgatcagcacgaa 19
||||||||||||||
Sbjct: 23 tcgatcagcacgaa 10
>ISMex25
Length = 887
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 40 cctcgaccccgcgc 53
||||||||||||||
Sbjct: 246 cctcgaccccgcgc 233
>ISAnsp4
Length = 2195
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 42 tcgaccccgcgcac 55
||||||||||||||
Sbjct: 1228 tcgaccccgcgcac 1241
>ISXau4
Length = 2458
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 158 ggtgccgtcctcga 171
||||||||||||||
Sbjct: 768 ggtgccgtcctcga 755
>ISAzca2
Length = 2458
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 158 ggtgccgtcctcga 171
||||||||||||||
Sbjct: 768 ggtgccgtcctcga 755
>ISGdi17
Length = 2482
Score = 28.2 bits (14), Expect = 4.8
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 127 tgccttcgtcgtcatgct 144
|||| |||||||||||||
Sbjct: 1649 tgccctcgtcgtcatgct 1666
>ISLxc1
Length = 3533
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 163 cgtcctcgaccttg 176
||||||||||||||
Sbjct: 1948 cgtcctcgaccttg 1935
>ISMsm7
Length = 1280
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 124 gcttgccttcgtcg 137
||||||||||||||
Sbjct: 790 gcttgccttcgtcg 777
>ISMsm4
Length = 1458
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 158 ggtgccgtcctcga 171
||||||||||||||
Sbjct: 201 ggtgccgtcctcga 188
>ISEc22
Length = 2454
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 75 gccggcagcatcat 88
||||||||||||||
Sbjct: 1220 gccggcagcatcat 1233
>ISPla1
Length = 1132
Score = 28.2 bits (14), Expect = 4.8
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 75 gccggcagcatcatcgag 92
|||||| |||||||||||
Sbjct: 731 gccggcggcatcatcgag 748
>ISRtr2
Length = 1321
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 142 gctcggtcacgaac 155
||||||||||||||
Sbjct: 100 gctcggtcacgaac 87
>ISPps1
Length = 1863
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 55 ccgcatcgatgccg 68
||||||||||||||
Sbjct: 821 ccgcatcgatgccg 808
>IS1602
Length = 2053
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 169 cgaccttgtcgacc 182
||||||||||||||
Sbjct: 330 cgaccttgtcgacc 317
>IS1404
Length = 1203
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 66 ccgcggaaggccgg 79
||||||||||||||
Sbjct: 708 ccgcggaaggccgg 721
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_296_length_246_cov_1.29586_ID_5762
(246 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| IS1162 | IS21 | - | Pseudomonas fluorescens | 38 | 0.005 |
| ISGlo5 | IS5 | Geobacter lovleyi | 36 | 0.020 | |
| ISSav6 | IS5 | ISL2 | Streptomyces avermitilis | 32 | 0.31 |
| ISSysp6 | ISKra4 | ISAzba1 | Synechococcus sp. | 30 | 1.2 |
| ISUnCu16 | IS66 | ISBst12 | Uncultured bacterium | 30 | 1.2 |
| ISFsp7 | IS5 | ISL2 | Frankia sp. | 30 | 1.2 |
| ISRhosp9 | IS5 | ISL2 | Rhodococcus sp. | 30 | 1.2 |
| ISRosp6 | IS5 | Roseobacter sp. | 30 | 1.2 | |
| ISMno13 | IS66 | Methylobacterium nodulans | 30 | 1.2 | |
| ISBrsp2 | IS1182 | Bradyrhizobium sp. | 30 | 1.2 | |
| ISCc5 | IS1182 | Caulobacter crescentus | 30 | 1.2 | |
| ISStma14 | IS3 | IS3 | Stenotrophomonas maltophilia | 30 | 1.2 |
| ISCARN95 | IS21 | Metagenomic data from CARNOULES | 30 | 1.2 | |
| ISThsp9 | Tn3 | Thiomonas sp. | 30 | 1.2 | |
| ISCARN28 | IS110 | IS1111 | Metagenomic data from CARNOULES | 30 | 1.2 |
| ISApr6 | IS66 | Alpha proteobacterium | 30 | 1.2 | |
| ISBad2 | IS3 | IS150 | Bifidobacterium adolescentis | 30 | 1.2 |
| ISXc4 | Tn3 | - | Xanthomonas campestris | 30 | 1.2 |
| ISSna1 | ISNCY | ISDol1 | Streptomyces natalensis | 28 | 4.8 |
| ISTsu1 | IS256 | Thermaerobacter subterraneus | 28 | 4.8 | |
| ISHlsp1 | IS200/IS605 | IS605 | Halopiger sp. | 28 | 4.8 |
| ISPko3 | IS5 | IS903 | Paracoccus kondratievae | 28 | 4.8 |
| ISNpe25 | IS66 | ISBst12 | Natrinema pellirubrum | 28 | 4.8 |
| ISMal1 | ISKra4 | ISAzba1 | Mesorhizobium alhagi | 28 | 4.8 |
| ISNpe8 | IS66 | ISBst12 | Natrinema pellirubrum | 28 | 4.8 |
| ISNamo3 | IS66 | ISBst12 | Natronomonas moolapensis | 28 | 4.8 |
| ISTdr1 | IS256 | Thiorhodococcus drewsii | 28 | 4.8 | |
| ISAzs36 | IS481 | Azospirillum sp. | 28 | 4.8 | |
| ISAzs25 | IS1380 | Azospirillum sp. | 28 | 4.8 | |
| ISAzs21 | IS66 | Azospirillum sp. | 28 | 4.8 | |
| ISSgr2 | IS5 | ISL2 | Streptomyces griseus | 28 | 4.8 |
| ISStsp4 | IS5 | ISL2 | Streptomyces sp. | 28 | 4.8 |
| ISHwa10 | IS66 | ISBst12 | Haloquadratum walsbyi | 28 | 4.8 |
| ISFsp13 | ISAzo13 | Frankia sp. | 28 | 4.8 | |
| ISPfr16 | IS30 | Propionibacterium freudenreichii | 28 | 4.8 | |
| ISPfr3 | ISL3 | Propionibacterium freudenreichii | 28 | 4.8 | |
| ISAar38 | IS5 | IS427 | Arthrobacter arilaitensis | 28 | 4.8 |
| ISAde2 | IS1182 | Anaeromyxobacter dehalogenans | 28 | 4.8 | |
| ISMdi9 | IS110 | IS1111 | Methylobacterium dichloromethanicum | 28 | 4.8 |
| ISMdi27 | IS21 | Methylobacterium dichloromethanicum | 28 | 4.8 | |
| ISMdi20 | IS630 | Methylobacterium dichloromethanicum | 28 | 4.8 | |
| ISMdi1 | IS630 | Methylobacterium dichloromethanicum | 28 | 4.8 | |
| ISAnsp5 | IS21 | Anaeromyxobacter sp. | 28 | 4.8 | |
| ISBusp1 | Tn3 | Burkholderia sp. | 28 | 4.8 | |
| ISThsp12 | IS1634 | Thiomonas sp. | 28 | 4.8 | |
| ISAzo14 | IS1634 | Azoarcus sp. | 28 | 4.8 | |
| ISFpe1 | IS66 | Fulvimarina pelagi | 28 | 4.8 | |
| ISMno4 | IS66 | ISBst12 | Methylobacterium nodulans | 28 | 4.8 |
| ISStau4 | IS66 | ISBst12 | Stigmatella aurantiaca | 28 | 4.8 |
| ISAli13 | IS21 | Azospirillum lipoferum | 28 | 4.8 | |
| ISAli10 | IS66 | Azospirillum lipoferum | 28 | 4.8 | |
| ISEc27 | IS3 | IS2 | Escherichia coli | 28 | 4.8 |
| ISSpr2 | IS3 | IS407 | Serratia proteamaculans | 28 | 4.8 |
| ISRle3 | IS66 | Rhizobium leguminosarum | 28 | 4.8 | |
| ISCsp1 | IS256 | Comamonas sp | 28 | 4.8 | |
| ISH10B | IS66 | ISBst12 | Halobacterium sp | 28 | 4.8 |
| ISBlo8 | IS256 | Bifidobacterium longum | 28 | 4.8 | |
| ISBlo2 | IS21 | Bifidobacterium longum | 28 | 4.8 | |
| ISSco2 | IS481 | Streptomyces coelicolor | 28 | 4.8 | |
| ISRl1 | IS66 | - | Rhizobium leguminosarum | 28 | 4.8 |
| ISH10 | IS66 | ISBst12 | Halobacterium sp | 28 | 4.8 |
| ISAav1 | IS21 | - | Acidovorax avenae | 28 | 4.8 |
| IS2 | IS3 | IS2 | Escherichia coli | 28 | 4.8 |
| IS1600 | IS21 | - | Ralstonia eutropha | 28 | 4.8 |
| IS1535 | IS607 | Mycobacterium tuberculosis | 28 | 4.8 | |
| IS1249 | IS256 | IS1249 | Corynebacterium xerosis | 28 | 4.8 |
| IS1112b | IS30 | - | Xanthomonas oryzae | 28 | 4.8 |
| IS1112 | IS30 | - | Xanthomonas oryzae | 28 | 4.8 |
>IS1162
Length = 2634
Score = 38.2 bits (19), Expect = 0.005
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 200 gcgccagcccagctcgcggccgagcag 226
||||||| ||||||||||| |||||||
Sbjct: 1945 gcgccaggccagctcgcggtcgagcag 1919
>ISGlo5
Length = 1325
Score = 36.2 bits (18), Expect = 0.020
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 163 cgctggtcttgacgatca 180
||||||||||||||||||
Sbjct: 769 cgctggtcttgacgatca 752
>ISSav6
Length = 1244
Score = 32.2 bits (16), Expect = 0.31
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 206 gcccagctcgcggccg 221
||||||||||||||||
Sbjct: 286 gcccagctcgcggccg 301
>ISSysp6
Length = 2172
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 121 cttcctgcaccaccg 135
|||||||||||||||
Sbjct: 800 cttcctgcaccaccg 786
>ISUnCu16
Length = 1532
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 214 cgcggccgagcaggt 228
|||||||||||||||
Sbjct: 287 cgcggccgagcaggt 273
>ISFsp7
Length = 1041
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 50 cacctggatgttgcc 64
|||||||||||||||
Sbjct: 572 cacctggatgttgcc 558
>ISRhosp9
Length = 944
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 51 acctggatgttgccg 65
|||||||||||||||
Sbjct: 553 acctggatgttgccg 539
>ISRosp6
Length = 1357
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 144 gcgtcattgaccacc 158
|||||||||||||||
Sbjct: 189 gcgtcattgaccacc 175
>ISMno13
Length = 2459
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 217 ggccgagcaggtcga 231
|||||||||||||||
Sbjct: 1105 ggccgagcaggtcga 1119
>ISBrsp2
Length = 1547
Score = 30.2 bits (15), Expect = 1.2
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 37 cgatgtgctcgaccacctg 55
|||||||||||||| ||||
Sbjct: 491 cgatgtgctcgaccgcctg 509
>ISCc5
Length = 1577
Score = 30.2 bits (15), Expect = 1.2
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 37 cgatgtgctcgaccacctg 55
||||||||||| |||||||
Sbjct: 588 cgatgtgctcggccacctg 570
>ISStma14
Length = 1231
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 183 gccttgctggcctcg 197
|||||||||||||||
Sbjct: 666 gccttgctggcctcg 652
>ISCARN95
Length = 2610
Score = 30.2 bits (15), Expect = 1.2
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 59 gttgccgggcaaggcgccg 77
|||||||||||| ||||||
Sbjct: 603 gttgccgggcaaagcgccg 585
>ISThsp9
Length = 6215
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 36 tcgatgtgctcgacc 50
|||||||||||||||
Sbjct: 2726 tcgatgtgctcgacc 2740
>ISCARN28
Length = 1419
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 194 ctcgaagcgccagcc 208
|||||||||||||||
Sbjct: 784 ctcgaagcgccagcc 770
>ISApr6
Length = 2479
Score = 30.2 bits (15), Expect = 1.2
Identities = 21/23 (91%)
Strand = Plus / Plus
Query: 199 agcgccagcccagctcgcggccg 221
|||||||| || |||||||||||
Sbjct: 2051 agcgccaggcccgctcgcggccg 2073
>ISBad2
Length = 1470
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 215 gcggccgagcaggtc 229
|||||||||||||||
Sbjct: 1243 gcggccgagcaggtc 1257
>ISXc4
Length = 6938
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 36 tcgatgtgctcgacc 50
|||||||||||||||
Sbjct: 2731 tcgatgtgctcgacc 2745
>ISSna1
Length = 1560
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 71 ggcgccgctgcggc 84
||||||||||||||
Sbjct: 456 ggcgccgctgcggc 443
>ISTsu1
Length = 1315
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 120 gcttcctgcaccac 133
||||||||||||||
Sbjct: 377 gcttcctgcaccac 364
>ISHlsp1
Length = 1853
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 97 cgcgccaccagtcg 110
||||||||||||||
Sbjct: 763 cgcgccaccagtcg 750
>ISPko3
Length = 1017
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 72 gcgccgctgcggcc 85
||||||||||||||
Sbjct: 692 gcgccgctgcggcc 705
>ISNpe25
Length = 1626
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 174 acgatcaccgcctt 187
||||||||||||||
Sbjct: 741 acgatcaccgcctt 754
>ISMal1
Length = 2308
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 221 gagcaggtcgacgg 234
||||||||||||||
Sbjct: 1316 gagcaggtcgacgg 1303
>ISNpe8
Length = 1650
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 174 acgatcaccgcctt 187
||||||||||||||
Sbjct: 765 acgatcaccgcctt 778
>ISNamo3
Length = 1546
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 174 acgatcaccgcctt 187
||||||||||||||
Sbjct: 661 acgatcaccgcctt 674
>ISTdr1
Length = 1384
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 190 tggcctcgaagcgc 203
||||||||||||||
Sbjct: 1029 tggcctcgaagcgc 1016
>ISAzs36
Length = 2622
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 44 ctcgaccacctgga 57
||||||||||||||
Sbjct: 2431 ctcgaccacctgga 2418
>ISAzs25
Length = 1614
Score = 28.2 bits (14), Expect = 4.8
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 205 agcccagctcgcggccga 222
|||||| |||||||||||
Sbjct: 1158 agcccacctcgcggccga 1175
>ISAzs21
Length = 2598
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 41 gtgctcgaccacct 54
||||||||||||||
Sbjct: 1451 gtgctcgaccacct 1438
>ISSgr2
Length = 873
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 220 cgagcaggtcgacg 233
||||||||||||||
Sbjct: 347 cgagcaggtcgacg 334
>ISStsp4
Length = 902
Score = 28.2 bits (14), Expect = 4.8
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 41 gtgctcgaccacctggat 58
||||||||||||| ||||
Sbjct: 818 gtgctcgaccacccggat 835
>ISHwa10
Length = 1598
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 174 acgatcaccgcctt 187
||||||||||||||
Sbjct: 713 acgatcaccgcctt 726
>ISFsp13
Length = 1724
Score = 28.2 bits (14), Expect = 4.8
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 102 caccagtcggcgctgccg 119
|||||| |||||||||||
Sbjct: 147 caccagccggcgctgccg 130
>ISPfr16
Length = 1234
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 218 gccgagcaggtcga 231
||||||||||||||
Sbjct: 877 gccgagcaggtcga 890
>ISPfr3
Length = 1457
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 43 gctcgaccacctgg 56
||||||||||||||
Sbjct: 270 gctcgaccacctgg 257
>ISAar38
Length = 1010
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 217 ggccgagcaggtcg 230
||||||||||||||
Sbjct: 340 ggccgagcaggtcg 327
>ISAde2
Length = 1498
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 21 tgcggatcgacggc 34
||||||||||||||
Sbjct: 1105 tgcggatcgacggc 1092
>ISMdi9
Length = 1399
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 167 ggtcttgacgatca 180
||||||||||||||
Sbjct: 397 ggtcttgacgatca 384
>ISMdi27
Length = 2476
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 107 gtcggcgctgccgg 120
||||||||||||||
Sbjct: 1360 gtcggcgctgccgg 1347
>ISMdi20
Length = 1056
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 214 cgcggccgagcagg 227
||||||||||||||
Sbjct: 443 cgcggccgagcagg 456
>ISMdi1
Length = 1058
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 214 cgcggccgagcagg 227
||||||||||||||
Sbjct: 445 cgcggccgagcagg 458
>ISAnsp5
Length = 2192
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 9 gcgccgtggcgctg 22
||||||||||||||
Sbjct: 1772 gcgccgtggcgctg 1759
>ISBusp1
Length = 3169
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 148 cattgaccaccgca 161
||||||||||||||
Sbjct: 1608 cattgaccaccgca 1595
>ISThsp12
Length = 2004
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 103 accagtcggcgctg 116
||||||||||||||
Sbjct: 1243 accagtcggcgctg 1230
>ISAzo14
Length = 1925
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 218 gccgagcaggtcga 231
||||||||||||||
Sbjct: 272 gccgagcaggtcga 285
>ISFpe1
Length = 2489
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 25 gatcgacggcgtcg 38
||||||||||||||
Sbjct: 443 gatcgacggcgtcg 456
>ISMno4
Length = 1385
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 218 gccgagcaggtcga 231
||||||||||||||
Sbjct: 362 gccgagcaggtcga 375
>ISStau4
Length = 1579
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 101 ccaccagtcggcgc 114
||||||||||||||
Sbjct: 445 ccaccagtcggcgc 432
>ISAli13
Length = 2756
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 90 gcgtggccgcgcca 103
||||||||||||||
Sbjct: 1320 gcgtggccgcgcca 1333
>ISAli10
Length = 2584
Score = 28.2 bits (14), Expect = 4.8
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 210 agctcgcggccgagcagg 227
|||| |||||||||||||
Sbjct: 1194 agctggcggccgagcagg 1211
>ISEc27
Length = 1321
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 57 atgttgccgggcaa 70
||||||||||||||
Sbjct: 203 atgttgccgggcaa 190
>ISSpr2
Length = 1221
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 172 tgacgatcaccgcc 185
||||||||||||||
Sbjct: 777 tgacgatcaccgcc 790
>ISRle3
Length = 2500
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 21 tgcggatcgacggc 34
||||||||||||||
Sbjct: 2387 tgcggatcgacggc 2374
>ISCsp1
Length = 1393
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 76 cgctgcggccgttg 89
||||||||||||||
Sbjct: 282 cgctgcggccgttg 269
>ISH10B
Length = 1629
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 174 acgatcaccgcctt 187
||||||||||||||
Sbjct: 744 acgatcaccgcctt 757
>ISBlo8
Length = 1408
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 82 ggccgttggcgtgg 95
||||||||||||||
Sbjct: 700 ggccgttggcgtgg 713
>ISBlo2
Length = 2455
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 89 ggcgtggccgcgcc 102
||||||||||||||
Sbjct: 1094 ggcgtggccgcgcc 1107
>ISSco2
Length = 1964
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 77 gctgcggccgttgg 90
||||||||||||||
Sbjct: 770 gctgcggccgttgg 757
>ISRl1
Length = 2495
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 21 tgcggatcgacggc 34
||||||||||||||
Sbjct: 2382 tgcggatcgacggc 2369
>ISH10
Length = 1584
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 174 acgatcaccgcctt 187
||||||||||||||
Sbjct: 699 acgatcaccgcctt 712
>ISAav1
Length = 2532
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 190 tggcctcgaagcgc 203
||||||||||||||
Sbjct: 774 tggcctcgaagcgc 761
>IS2
Length = 1331
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 57 atgttgccgggcaa 70
||||||||||||||
Sbjct: 208 atgttgccgggcaa 195
>IS1600
Length = 2520
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 108 tcggcgctgccggc 121
||||||||||||||
Sbjct: 2390 tcggcgctgccggc 2403
>IS1535
Length = 2300
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 73 cgccgctgcggccg 86
||||||||||||||
Sbjct: 193 cgccgctgcggccg 180
>IS1249
Length = 1385
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 126 tgcaccaccgcaat 139
||||||||||||||
Sbjct: 327 tgcaccaccgcaat 340
>IS1112b
Length = 1055
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 31 cggcgtcgatgtgc 44
||||||||||||||
Sbjct: 428 cggcgtcgatgtgc 415
>IS1112
Length = 1055
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 31 cggcgtcgatgtgc 44
||||||||||||||
Sbjct: 428 cggcgtcgatgtgc 415
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_297_length_246_cov_0.863905_ID_5764
(246 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISAZo16 | IS21 | Azoarcus sp. | 36 | 0.020 | |
| ISAzs10 | IS5 | Azospirillum sp. | 34 | 0.078 | |
| ISRba2 | IS4 | IS50 | Rhodopirellula baltica | 34 | 0.078 |
| ISMt2 | IS21 | - | Mycobacterium tuberculosis | 34 | 0.078 |
| ISCsp1 | IS256 | Comamonas sp | 32 | 0.31 | |
| ISXax1 | IS256 | Xanthomonas axonopodis | 32 | 0.31 | |
| ISPa53 | IS110 | IS1111 | Pseudomonas aeruginosa | 30 | 1.2 |
| ISMal1 | ISKra4 | ISAzba1 | Mesorhizobium alhagi | 30 | 1.2 |
| ISMgi5 | IS256 | Mycobacterium gilvum | 30 | 1.2 | |
| ISPa43 | Tn3 | Pseudomonas aeruginosa | 30 | 1.2 | |
| ISPfr14 | IS30 | Propionibacterium freudenreichii | 30 | 1.2 | |
| ISNaoc8 | IS200/IS605 | IS1341 | Natronococcus occultus | 28 | 4.8 |
| ISHwa28 | IS200/IS605 | IS1341 | Haloquadratum walsbyi | 28 | 4.8 |
| ISNamo22 | IS200/IS605 | IS1341 | Natronomonas moolapensis | 28 | 4.8 |
| ISHmu2 | IS6 | Halomicrobium mukohataei | 28 | 4.8 | |
| ISGpo1 | IS256 | Gordonia polyisoprenivorans | 28 | 4.8 | |
| ISPaes1 | IS5 | IS427 | Paracoccus aestuarii | 28 | 4.8 |
| ISAar11 | IS1380 | Arthrobacter arilaitensis | 28 | 4.8 | |
| ISMdi10 | IS110 | IS1111 | Methylobacterium dichloromethanicum | 28 | 4.8 |
| ISAcma40 | IS1 | Acaryochloris marina | 28 | 4.8 | |
| IS679 | IS66 | Escherichia coli | 28 | 4.8 | |
| ISAli20 | Tn3 | Azospirillum lipoferum | 28 | 4.8 | |
| ISSpu5 | IS21 | Shewanella putrefaciens | 28 | 4.8 | |
| ISCro1 | IS66 | Citrobacter rodentium | 28 | 4.8 | |
| ISPrst1 | IS4 | IS50 | Providencia stuartii | 28 | 4.8 |
| ISXo7 | IS630 | - | Xanthomonas oryzae | 28 | 4.8 |
| IS4Bsu1 | IS4 | IS4Sa | Bacillus subtilis | 28 | 4.8 |
| IS1474 | IS21 | - | Pseudomonas alcaligenes | 28 | 4.8 |
| IS1312 | IS3 | IS2 | Agrobacterium tumefaciens | 28 | 4.8 |
| IS1206 | IS3 | IS51 | Corynebacterium glutamicum | 28 | 4.8 |
>ISAZo16
Length = 2485
Score = 36.2 bits (18), Expect = 0.020
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 101 ccagggcgacacctcggtgctg 122
||||||||| ||||||||||||
Sbjct: 2154 ccagggcgagacctcggtgctg 2175
>ISAzs10
Length = 1307
Score = 34.2 bits (17), Expect = 0.078
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 86 ggcttcgatcagcgtcc 102
|||||||||||||||||
Sbjct: 537 ggcttcgatcagcgtcc 521
>ISRba2
Length = 1365
Score = 34.2 bits (17), Expect = 0.078
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 82 tgtcggcttcgatcagc 98
|||||||||||||||||
Sbjct: 421 tgtcggcttcgatcagc 405
>ISMt2
Length = 2645
Score = 34.2 bits (17), Expect = 0.078
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 24 gcggcctccagccgatcgcag 44
|||||||||||||| ||||||
Sbjct: 1555 gcggcctccagccggtcgcag 1535
>ISCsp1
Length = 1393
Score = 32.2 bits (16), Expect = 0.31
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 104 gggcgacacctcggtg 119
||||||||||||||||
Sbjct: 488 gggcgacacctcggtg 473
>ISXax1
Length = 1329
Score = 32.2 bits (16), Expect = 0.31
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 105 ggcgacacctcggtgc 120
||||||||||||||||
Sbjct: 491 ggcgacacctcggtgc 476
>ISPa53
Length = 1381
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 173 gcgattgcgccagtc 187
|||||||||||||||
Sbjct: 268 gcgattgcgccagtc 254
>ISMal1
Length = 2308
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 27 gcctccagccgatcg 41
|||||||||||||||
Sbjct: 964 gcctccagccgatcg 950
>ISMgi5
Length = 1470
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 106 gcgacacctcggtgc 120
|||||||||||||||
Sbjct: 529 gcgacacctcggtgc 515
>ISPa43
Length = 19903
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 128 gtcgatcacgtcgct 142
|||||||||||||||
Sbjct: 19303 gtcgatcacgtcgct 19289
>ISPfr14
Length = 1490
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 128 gtcgatcacgtcgct 142
|||||||||||||||
Sbjct: 1144 gtcgatcacgtcgct 1158
>ISNaoc8
Length = 1584
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 7 acgcgcctcagtcc 20
||||||||||||||
Sbjct: 1552 acgcgcctcagtcc 1539
>ISHwa28
Length = 1482
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 7 acgcgcctcagtcc 20
||||||||||||||
Sbjct: 1450 acgcgcctcagtcc 1437
>ISNamo22
Length = 1706
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 154 cgtagtcgggccaa 167
||||||||||||||
Sbjct: 826 cgtagtcgggccaa 813
>ISHmu2
Length = 697
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 229 gctcgttgaagcgc 242
||||||||||||||
Sbjct: 517 gctcgttgaagcgc 504
>ISGpo1
Length = 1432
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 85 cggcttcgatcagc 98
||||||||||||||
Sbjct: 1268 cggcttcgatcagc 1255
>ISPaes1
Length = 851
Score = 28.2 bits (14), Expect = 4.8
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 54 agcactttgatccgcgcg 71
|||||| |||||||||||
Sbjct: 362 agcactgtgatccgcgcg 379
>ISAar11
Length = 1737
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 94 tcagcgtccagggc 107
||||||||||||||
Sbjct: 990 tcagcgtccagggc 977
>ISMdi10
Length = 1186
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 85 cggcttcgatcagc 98
||||||||||||||
Sbjct: 704 cggcttcgatcagc 691
>ISAcma40
Length = 1068
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 228 cgctcgttgaagcg 241
||||||||||||||
Sbjct: 178 cgctcgttgaagcg 165
>IS679
Length = 2704
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 178 tgcgccagtcttca 191
||||||||||||||
Sbjct: 1413 tgcgccagtcttca 1426
>ISAli20
Length = 3828
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 128 gtcgatcacgtcgc 141
||||||||||||||
Sbjct: 1491 gtcgatcacgtcgc 1478
>ISSpu5
Length = 2556
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 24 gcggcctccagccg 37
||||||||||||||
Sbjct: 1550 gcggcctccagccg 1537
>ISCro1
Length = 2699
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 178 tgcgccagtcttca 191
||||||||||||||
Sbjct: 1408 tgcgccagtcttca 1421
>ISPrst1
Length = 1512
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 193 cggtaatcttgaag 206
||||||||||||||
Sbjct: 931 cggtaatcttgaag 944
>ISXo7
Length = 1114
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 1 acctgcacgcgcct 14
||||||||||||||
Sbjct: 116 acctgcacgcgcct 103
>IS4Bsu1
Length = 1406
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 51 tcgagcactttgat 64
||||||||||||||
Sbjct: 930 tcgagcactttgat 917
>IS1474
Length = 2633
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 138 tcgctcaccgcgcg 151
||||||||||||||
Sbjct: 469 tcgctcaccgcgcg 456
>IS1312
Length = 1317
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 138 tcgctcaccgcgcg 151
||||||||||||||
Sbjct: 1246 tcgctcaccgcgcg 1259
>IS1206
Length = 1290
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 227 gcgctcgttgaagc 240
||||||||||||||
Sbjct: 632 gcgctcgttgaagc 645
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_298_length_246_cov_0.857988_ID_5766
(246 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISAzs30 | IS21 | Azospirillum sp. | 38 | 0.005 | |
| ISPsp3 | IS5 | IS5 | Pseudomonas sp. | 36 | 0.020 |
| ISCARN110 | IS91 | Metagenomic data from CARNOULES | 34 | 0.078 | |
| ISPpa5 | IS66 | Paracoccus pantotrophus | 34 | 0.078 | |
| ISScl2 | ISAzo13 | Streptomyces clavuligerus | 32 | 0.31 | |
| ISMpo9 | IS701 | Methylobacterium populi | 32 | 0.31 | |
| IS931 | IS256 | - | Burkholderia cepacia | 32 | 0.31 |
| ISMno24 | IS91 | Methylobacterium nodulans | 30 | 1.2 | |
| ISNamo18 | IS200/IS605 | IS605 | Natronomonas moolapensis | 30 | 1.2 |
| ISHvo18 | IS200/IS605 | Haloferax volcanii | 30 | 1.2 | |
| ISAzs1 | IS701 | Azospirillum sp. | 30 | 1.2 | |
| ISPso1 | IS256 | Paracoccus solventivorans | 30 | 1.2 | |
| ISFsp12 | ISAzo13 | Frankia sp. | 30 | 1.2 | |
| ISStr1 | IS1380 | Salinispora tropica | 30 | 1.2 | |
| ISAli17 | IS5 | IS903 | Azospirillum lipoferum | 30 | 1.2 |
| ISDds8 | IS630 | Deinococcus deserti | 30 | 1.2 | |
| ISRm12 | IS5 | IS5 | Sinorhizobium meliloti | 30 | 1.2 |
| ISNpe31 | IS200/IS605 | IS1341 | Natrinema pellirubrum | 28 | 4.8 |
| ISRtr5 | IS66 | Rhizobium tropici | 28 | 4.8 | |
| ISHwa29 | IS200/IS605 | IS1341 | Haloquadratum walsbyi | 28 | 4.8 |
| ISPa55 | IS110 | IS1111 | Pseudomonas aeruginosa | 28 | 4.8 |
| ISSm4 | ISL3 | Serratia marcescens | 28 | 4.8 | |
| ISStvi1 | ISAzo13 | Streptomyces violaceusniger | 28 | 4.8 | |
| ISPa43 | Tn3 | Pseudomonas aeruginosa | 28 | 4.8 | |
| ISPa40 | Tn3 | Pseudomonas aeruginosa | 28 | 4.8 | |
| ISCap2 | IS5 | IS903 | Candidatus Accumulibacter phosphatis | 28 | 4.8 |
| ISUnCu14 | IS66 | Uncultured bacterium | 28 | 4.8 | |
| ISVsp6 | ISAs1 | Verrucomicrobium spinosum | 28 | 4.8 | |
| ISCde2 | ISNCY | ISDol1 | Candidatus Desulforudis audaxviator | 28 | 4.8 |
| ISMtsp8 | IS21 | Methylobacterium sp. | 28 | 4.8 | |
| ISAau5 | ISNCY | Arthrobacter aurescens | 28 | 4.8 | |
| ISAar42 | ISL3 | Arthrobacter arilaitensis | 28 | 4.8 | |
| ISAtu7 | IS110 | Agrobacterium tumefaciens | 28 | 4.8 | |
| IS693 | IS66 | Rhizobium sp. | 28 | 4.8 | |
| IS692 | IS66 | Agrobacterium tumefaciens | 28 | 4.8 | |
| ISMsi3 | IS3 | IS407 | Methylocella silvestris | 28 | 4.8 |
| ISAnsp6 | IS1182 | Anaeromyxobacter sp. | 28 | 4.8 | |
| ISVsp18 | ISAs1 | Verrucomicrobium spinosum | 28 | 4.8 | |
| ISVer2 | ISAs1 | Bacterium Ellin514 | 28 | 4.8 | |
| ISThsp12 | IS1634 | Thiomonas sp. | 28 | 4.8 | |
| ISCARN104 | IS66 | Metagenomic data from CARNOULES | 28 | 4.8 | |
| ISCARN70 | IS4 | IS4Sa | Metagenomic data from CARNOULES | 28 | 4.8 |
| ISCARN62 | ISNCY | IS1202 | Metagenomic data from CARNOULES | 28 | 4.8 |
| ISAli10 | IS66 | Azospirillum lipoferum | 28 | 4.8 | |
| ISGob4 | IS66 | ISBst12 | Gemmata obscuriglobus | 28 | 4.8 |
| ISDsh3 | IS1595 | ISNha5 | Dinoroseobacter shibae | 28 | 4.8 |
| ISBope1 | IS3 | IS150 | Bordetella petrii | 28 | 4.8 |
| ISKpn4 | IS110 | IS1111 | Klebsiella pneumoniae | 28 | 4.8 |
| ISPpu22 | IS3 | IS51 | Pseudomonas putida | 28 | 4.8 |
| ISNisp2 | IS1595 | ISNwi1 | Nitrobacter sp. | 28 | 4.8 |
| ISGka2 | IS110 | Geobacillus kaustophilus | 28 | 4.8 | |
| ISBlo1 | IS21 | Bifidobacterium longum | 28 | 4.8 | |
| IS2001 | ISL3 | - | Bifidobacterium lactis | 28 | 4.8 |
>ISAzs30
Length = 2365
Score = 38.2 bits (19), Expect = 0.005
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 213 gatgtcggccagggtggcg 231
|||||||||||||||||||
Sbjct: 1872 gatgtcggccagggtggcg 1854
>ISPsp3
Length = 1190
Score = 36.2 bits (18), Expect = 0.020
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 215 tgtcggccagggtggcgt 232
||||||||||||||||||
Sbjct: 449 tgtcggccagggtggcgt 432
>ISCARN110
Length = 2294
Score = 34.2 bits (17), Expect = 0.078
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 21 cgcggcggcgtccaggc 37
|||||||||||||||||
Sbjct: 746 cgcggcggcgtccaggc 762
>ISPpa5
Length = 2829
Score = 34.2 bits (17), Expect = 0.078
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 204 gcgggcgaggatgtcggccag 224
|||||| ||||||||||||||
Sbjct: 2431 gcgggccaggatgtcggccag 2411
>ISScl2
Length = 1819
Score = 32.2 bits (16), Expect = 0.31
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 191 gggcggtgtcgtggcgggcg 210
||||||||||| ||||||||
Sbjct: 1749 gggcggtgtcgaggcgggcg 1730
>ISMpo9
Length = 1413
Score = 32.2 bits (16), Expect = 0.31
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 187 ggcagggcggtgtcgt 202
||||||||||||||||
Sbjct: 371 ggcagggcggtgtcgt 356
>IS931
Length = 1477
Score = 32.2 bits (16), Expect = 0.31
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 48 ggcctggtcgagcagt 63
||||||||||||||||
Sbjct: 294 ggcctggtcgagcagt 309
>ISMno24
Length = 2157
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 109 tcggcggcggcatgg 123
|||||||||||||||
Sbjct: 1465 tcggcggcggcatgg 1479
>ISNamo18
Length = 1885
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 1 ttgaaggcgtcgagt 15
|||||||||||||||
Sbjct: 1255 ttgaaggcgtcgagt 1241
>ISHvo18
Length = 1892
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 1 ttgaaggcgtcgagt 15
|||||||||||||||
Sbjct: 1205 ttgaaggcgtcgagt 1191
>ISAzs1
Length = 1508
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 188 gcagggcggtgtcgt 202
|||||||||||||||
Sbjct: 730 gcagggcggtgtcgt 716
>ISPso1
Length = 1400
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 122 gggtgacgctggcgg 136
|||||||||||||||
Sbjct: 70 gggtgacgctggcgg 84
>ISFsp12
Length = 1730
Score = 30.2 bits (15), Expect = 1.2
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 180 ggcggcgggcagggcggtg 198
||||||| |||||||||||
Sbjct: 1398 ggcggcgagcagggcggtg 1380
>ISStr1
Length = 1664
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 47 gggcctggtcgagca 61
|||||||||||||||
Sbjct: 760 gggcctggtcgagca 746
>ISAli17
Length = 1109
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 24 ggcggcgtccaggcg 38
|||||||||||||||
Sbjct: 237 ggcggcgtccaggcg 223
>ISDds8
Length = 986
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 94 ttgtggcgctggtcg 108
|||||||||||||||
Sbjct: 72 ttgtggcgctggtcg 86
>ISRm12
Length = 1481
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 148 cggccaaggcgttcg 162
|||||||||||||||
Sbjct: 1018 cggccaaggcgttcg 1032
>ISNpe31
Length = 1667
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 205 cgggcgaggatgtc 218
||||||||||||||
Sbjct: 1652 cgggcgaggatgtc 1665
>ISRtr5
Length = 2577
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 50 cctggtcgagcagt 63
||||||||||||||
Sbjct: 587 cctggtcgagcagt 600
>ISHwa29
Length = 1670
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 230 cgtgttcgtcgcgg 243
||||||||||||||
Sbjct: 357 cgtgttcgtcgcgg 344
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 205 cgggcgaggatgtc 218
||||||||||||||
Sbjct: 1655 cgggcgaggatgtc 1668
>ISPa55
Length = 1543
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 144 tggccggccaaggc 157
||||||||||||||
Sbjct: 665 tggccggccaaggc 652
>ISSm4
Length = 9109
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 104 ggtcgtcggcggcg 117
||||||||||||||
Sbjct: 6493 ggtcgtcggcggcg 6480
>ISStvi1
Length = 1738
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 191 gggcggtgtcgtgg 204
||||||||||||||
Sbjct: 817 gggcggtgtcgtgg 804
>ISPa43
Length = 19903
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 213 gatgtcggccaggg 226
||||||||||||||
Sbjct: 1111 gatgtcggccaggg 1124
>ISPa40
Length = 6592
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 35 ggcgcaggcggtgg 48
||||||||||||||
Sbjct: 2592 ggcgcaggcggtgg 2579
>ISCap2
Length = 1123
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 21 cgcggcggcgtcca 34
||||||||||||||
Sbjct: 224 cgcggcggcgtcca 211
>ISUnCu14
Length = 2442
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 216 gtcggccagggtgg 229
||||||||||||||
Sbjct: 1529 gtcggccagggtgg 1516
Score = 28.2 bits (14), Expect = 4.8
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 198 gtcgtggcgggcgaggat 215
|||| |||||||||||||
Sbjct: 2060 gtcgaggcgggcgaggat 2043
>ISVsp6
Length = 1241
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 211 aggatgtcggccag 224
||||||||||||||
Sbjct: 175 aggatgtcggccag 162
>ISCde2
Length = 1704
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 5 aggcgtcgagtttg 18
||||||||||||||
Sbjct: 281 aggcgtcgagtttg 268
>ISMtsp8
Length = 2371
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 216 gtcggccagggtgg 229
||||||||||||||
Sbjct: 1865 gtcggccagggtgg 1852
>ISAau5
Length = 3989
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 106 tcgtcggcggcggc 119
||||||||||||||
Sbjct: 2153 tcgtcggcggcggc 2166
>ISAar42
Length = 1443
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 208 gcgaggatgtcggc 221
||||||||||||||
Sbjct: 1262 gcgaggatgtcggc 1249
>ISAtu7
Length = 1472
Score = 28.2 bits (14), Expect = 4.8
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 202 tggcgggcgaggatgtcg 219
||||||||||||| ||||
Sbjct: 786 tggcgggcgaggaggtcg 769
>IS693
Length = 3078
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 35 ggcgcaggcggtgg 48
||||||||||||||
Sbjct: 1701 ggcgcaggcggtgg 1714
>IS692
Length = 2563
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 50 cctggtcgagcagt 63
||||||||||||||
Sbjct: 587 cctggtcgagcagt 600
>ISMsi3
Length = 1107
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 206 gggcgaggatgtcg 219
||||||||||||||
Sbjct: 817 gggcgaggatgtcg 830
>ISAnsp6
Length = 1515
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 209 cgaggatgtcggcc 222
||||||||||||||
Sbjct: 1027 cgaggatgtcggcc 1014
>ISVsp18
Length = 1241
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 211 aggatgtcggccag 224
||||||||||||||
Sbjct: 175 aggatgtcggccag 162
>ISVer2
Length = 1231
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 177 ctgggcggcgggca 190
||||||||||||||
Sbjct: 468 ctgggcggcgggca 481
>ISThsp12
Length = 2004
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 24 ggcggcgtccaggc 37
||||||||||||||
Sbjct: 353 ggcggcgtccaggc 340
>ISCARN104
Length = 2483
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 218 cggccagggtggcg 231
||||||||||||||
Sbjct: 1209 cggccagggtggcg 1196
>ISCARN70
Length = 1312
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 57 gagcagtacctcgc 70
||||||||||||||
Sbjct: 247 gagcagtacctcgc 260
>ISCARN62
Length = 1398
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 127 acgctggcggagac 140
||||||||||||||
Sbjct: 1214 acgctggcggagac 1201
>ISAli10
Length = 2584
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 216 gtcggccagggtgg 229
||||||||||||||
Sbjct: 1621 gtcggccagggtgg 1608
>ISGob4
Length = 1576
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 35 ggcgcaggcggtgg 48
||||||||||||||
Sbjct: 589 ggcgcaggcggtgg 602
>ISDsh3
Length = 3472
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 203 ggcgggcgaggatg 216
||||||||||||||
Sbjct: 1346 ggcgggcgaggatg 1359
>ISBope1
Length = 1458
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 174 acgctgggcggcgg 187
||||||||||||||
Sbjct: 177 acgctgggcggcgg 190
>ISKpn4
Length = 1377
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 8 cgtcgagtttgtgc 21
||||||||||||||
Sbjct: 706 cgtcgagtttgtgc 693
>ISPpu22
Length = 1232
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 23 cggcggcgtccagg 36
||||||||||||||
Sbjct: 633 cggcggcgtccagg 646
>ISNisp2
Length = 2637
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 140 cgtctggccggcca 153
||||||||||||||
Sbjct: 519 cgtctggccggcca 532
>ISGka2
Length = 1561
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 205 cgggcgaggatgtc 218
||||||||||||||
Sbjct: 756 cgggcgaggatgtc 769
>ISBlo1
Length = 2590
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 178 tgggcggcgggcag 191
||||||||||||||
Sbjct: 575 tgggcggcgggcag 588
>IS2001
Length = 1406
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 206 gggcgaggatgtcg 219
||||||||||||||
Sbjct: 1235 gggcgaggatgtcg 1222
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_299_length_246_cov_0.863905_ID_5768
(246 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISAzo38 | IS5 | IS427 | Azoarcus sp. | 34 | 0.078 |
| ISThsp9 | Tn3 | Thiomonas sp. | 32 | 0.31 | |
| IS2606 | IS256 | - | Mycobacterium ulcerans | 32 | 0.31 |
| ISAeme25 | IS256 | Aeromonas media | 30 | 1.2 | |
| ISBusp5 | ISKra4 | ISAzba1 | Burkholderia sp. | 30 | 1.2 |
| ISPa43 | Tn3 | Pseudomonas aeruginosa | 30 | 1.2 | |
| ISArsp6 | Tn3 | Arthrobacter sp. | 30 | 1.2 | |
| ISAzo1 | IS1182 | Azoarcus sp. | 30 | 1.2 | |
| ISDsh2 | IS3 | IS407 | Dinoroseobacter shibae | 30 | 1.2 |
| ISFsp8 | IS3 | IS3 | Frankia sp. | 30 | 1.2 |
| ISHvo10 | IS110 | IS1111 | Haloferax volcanii | 28 | 4.8 |
| ISLdr1 | ISKra4 | ISKra4 | Legionella drancourtii | 28 | 4.8 |
| ISSysp6 | ISKra4 | ISAzba1 | Synechococcus sp. | 28 | 4.8 |
| ISPa40 | Tn3 | Pseudomonas aeruginosa | 28 | 4.8 | |
| ISPa36 | IS21 | Pseudomonas aeruginosa | 28 | 4.8 | |
| ISGeob7 | IS5 | IS427 | Geodermatophilus obscurus | 28 | 4.8 |
| ISHla5 | ISH3 | Halorubrum lacusprofundi | 28 | 4.8 | |
| ISRssp11 | IS5 | Roseovarius sp. | 28 | 4.8 | |
| ISRop2 | ISAzo13 | Rhodococcus opacus | 28 | 4.8 | |
| ISMch7 | IS701 | Methylobacterium chloromethanicum | 28 | 4.8 | |
| ISBps2 | IS3 | IS3 | Burkholderia pseudomallei | 28 | 4.8 |
| ISAli4 | IS3 | IS51 | Azospirillum lipoferum | 28 | 4.8 |
| ISNfa1 | IS481 | Nocardia farcinica | 28 | 4.8 | |
| ISOgr2 | IS3 | IS2 | Oceanicola granulosus | 28 | 4.8 |
| ISPfu3 | IS982 | Pyrococcus furiosus | 28 | 4.8 | |
| ISR1 | IS3 | IS407 | Rhizobium lupini | 28 | 4.8 |
| IS408 | IS21 | - | Burkholderia cepacia | 28 | 4.8 |
| IS1113 | IS256 | - | Xanthomonas oryzae | 28 | 4.8 |
>ISAzo38
Length = 894
Score = 34.2 bits (17), Expect = 0.078
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 191 cacgacatgaagctggt 207
|||||||||||||||||
Sbjct: 534 cacgacatgaagctggt 550
>ISThsp9
Length = 6215
Score = 32.2 bits (16), Expect = 0.31
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 84 tgctggatgaaccggc 99
||||||||||||||||
Sbjct: 5838 tgctggatgaaccggc 5853
>IS2606
Length = 1404
Score = 32.2 bits (16), Expect = 0.31
Identities = 22/24 (91%)
Strand = Plus / Plus
Query: 151 gctgcgcagccatcacaacaccac 174
|||| ||||||||||||| |||||
Sbjct: 71 gctgtgcagccatcacaaaaccac 94
>ISAeme25
Length = 1385
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 175 tatcctgctgattga 189
|||||||||||||||
Sbjct: 47 tatcctgctgattga 61
>ISBusp5
Length = 1533
Score = 30.2 bits (15), Expect = 1.2
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 25 cggcgaccagcgtcgtctg 43
||||| |||||||||||||
Sbjct: 298 cggcgtccagcgtcgtctg 316
>ISPa43
Length = 19903
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 143 atcgccgagctgcgc 157
|||||||||||||||
Sbjct: 9191 atcgccgagctgcgc 9205
>ISArsp6
Length = 26712
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 98 gcggcggggctgaac 112
|||||||||||||||
Sbjct: 8753 gcggcggggctgaac 8739
>ISAzo1
Length = 1545
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 136 cgaactgatcgccga 150
|||||||||||||||
Sbjct: 398 cgaactgatcgccga 384
>ISDsh2
Length = 1203
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 142 gatcgccgagctgcg 156
|||||||||||||||
Sbjct: 829 gatcgccgagctgcg 843
>ISFsp8
Length = 1297
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 135 acgaactgatcgccg 149
|||||||||||||||
Sbjct: 370 acgaactgatcgccg 384
>ISHvo10
Length = 1462
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 103 ggggctgaacccga 116
||||||||||||||
Sbjct: 956 ggggctgaacccga 969
>ISLdr1
Length = 3746
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 216 tttccgaccgtatt 229
||||||||||||||
Sbjct: 2053 tttccgaccgtatt 2040
>ISSysp6
Length = 2172
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 201 agctggtgatgggc 214
||||||||||||||
Sbjct: 220 agctggtgatgggc 233
>ISPa40
Length = 6592
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 24 acggcgaccagcgt 37
||||||||||||||
Sbjct: 4434 acggcgaccagcgt 4421
>ISPa36
Length = 2468
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 151 gctgcgcagccatc 164
||||||||||||||
Sbjct: 230 gctgcgcagccatc 217
>ISGeob7
Length = 883
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 144 tcgccgagctgcgc 157
||||||||||||||
Sbjct: 334 tcgccgagctgcgc 347
>ISHla5
Length = 1397
Score = 28.2 bits (14), Expect = 4.8
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 183 tgattgagcacgacatga 200
||||| ||||||||||||
Sbjct: 742 tgattcagcacgacatga 759
>ISRssp11
Length = 1356
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 144 tcgccgagctgcgc 157
||||||||||||||
Sbjct: 990 tcgccgagctgcgc 1003
>ISRop2
Length = 2171
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 128 gagctggacgaact 141
||||||||||||||
Sbjct: 1372 gagctggacgaact 1385
>ISMch7
Length = 1412
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 199 gaagctggtgatgg 212
||||||||||||||
Sbjct: 1038 gaagctggtgatgg 1051
>ISBps2
Length = 1233
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 144 tcgccgagctgcgc 157
||||||||||||||
Sbjct: 951 tcgccgagctgcgc 964
>ISAli4
Length = 1324
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 136 cgaactgatcgccg 149
||||||||||||||
Sbjct: 164 cgaactgatcgccg 151
>ISNfa1
Length = 1112
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 91 tgaaccggcggcgg 104
||||||||||||||
Sbjct: 459 tgaaccggcggcgg 472
>ISOgr2
Length = 1299
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 79 cctgatgctggatg 92
||||||||||||||
Sbjct: 231 cctgatgctggatg 244
>ISPfu3
Length = 933
Score = 28.2 bits (14), Expect = 4.8
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 67 tcagccggaaatcctgat 84
||||| ||||||||||||
Sbjct: 76 tcagcaggaaatcctgat 93
>ISR1
Length = 1259
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 152 ctgcgcagccatca 165
||||||||||||||
Sbjct: 1173 ctgcgcagccatca 1160
>IS408
Length = 2798
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 137 gaactgatcgccga 150
||||||||||||||
Sbjct: 1144 gaactgatcgccga 1157
>IS1113
Length = 1306
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 130 gctggacgaactga 143
||||||||||||||
Sbjct: 91 gctggacgaactga 104
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_300_length_246_cov_0.863905_ID_5770
(246 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISYen1 | IS110 | IS1111 | Yersinia enterocolitica | 32 | 0.31 |
| ISXc4 | Tn3 | - | Xanthomonas campestris | 32 | 0.31 |
| ISMfu2 | ISKra4 | ISKra4 | Myxococcus fulvus | 30 | 1.2 |
| ISVat1 | IS256 | IS1249 | Veillonella atypica | 30 | 1.2 |
| ISLcr1 | ISLre2 | Lactobacillus crispatus | 30 | 1.2 | |
| ISThsp9 | Tn3 | Thiomonas sp. | 30 | 1.2 | |
| ISMva2 | IS481 | Mycobacterium vanbaalenii | 30 | 1.2 | |
| ISSs1 | IS200/IS605 | IS1341 | Synechococcus sp. | 30 | 1.2 |
| ISMav9 | ISNCY | ISDol1 | Mycobacterium avium | 28 | 4.8 |
| TnXo19 | Tn3 | Xanthomonas oryzae | 28 | 4.8 | |
| ISHth3 | IS4 | IS4Sa | Halococcus thailandensis | 28 | 4.8 |
| ISArsp6 | Tn3 | Arthrobacter sp. | 28 | 4.8 | |
| ISCARN104 | IS66 | Metagenomic data from CARNOULES | 28 | 4.8 | |
| ISDha16 | IS701 | Desulfitobacterium hafniense | 28 | 4.8 | |
| IS6120 | IS256 | - | Mycobacterium smegmatis | 28 | 4.8 |
>ISYen1
Length = 1376
Score = 32.2 bits (16), Expect = 0.31
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 104 agcagttgggcaaaaa 119
||||||||||||||||
Sbjct: 684 agcagttgggcaaaaa 699
>ISXc4
Length = 6938
Score = 32.2 bits (16), Expect = 0.31
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 223 agcagcaccttgtggc 238
||||||||||||||||
Sbjct: 2320 agcagcaccttgtggc 2305
>ISMfu2
Length = 1554
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 78 gatgggcgtgctgcc 92
|||||||||||||||
Sbjct: 574 gatgggcgtgctgcc 588
>ISVat1
Length = 1337
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 204 tgtgtgtgaaaaccc 218
|||||||||||||||
Sbjct: 19 tgtgtgtgaaaaccc 33
>ISLcr1
Length = 1597
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 70 gatgagctgatgggc 84
|||||||||||||||
Sbjct: 412 gatgagctgatgggc 426
>ISThsp9
Length = 6215
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 222 cagcagcaccttgtg 236
|||||||||||||||
Sbjct: 2316 cagcagcaccttgtg 2302
>ISMva2
Length = 1966
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 221 ccagcagcaccttgt 235
|||||||||||||||
Sbjct: 1495 ccagcagcaccttgt 1481
>ISSs1
Length = 1481
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 105 gcagttgggcaaaaa 119
|||||||||||||||
Sbjct: 569 gcagttgggcaaaaa 583
>ISMav9
Length = 1572
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 116 aaaaagtcagcgcg 129
||||||||||||||
Sbjct: 11 aaaaagtcagcgcg 24
>TnXo19
Length = 18767
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 77 tgatgggcgtgctg 90
||||||||||||||
Sbjct: 7000 tgatgggcgtgctg 7013
>ISHth3
Length = 1472
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 25 ccgtcgctgctgcc 38
||||||||||||||
Sbjct: 1301 ccgtcgctgctgcc 1288
>ISArsp6
Length = 26712
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 152 atatcaccgacttt 165
||||||||||||||
Sbjct: 6123 atatcaccgacttt 6110
>ISCARN104
Length = 2483
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 36 gccagtgcagtcgc 49
||||||||||||||
Sbjct: 631 gccagtgcagtcgc 618
>ISDha16
Length = 1364
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 95 tcaccaaagagcag 108
||||||||||||||
Sbjct: 1193 tcaccaaagagcag 1180
>IS6120
Length = 1486
Score = 28.2 bits (14), Expect = 4.8
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 91 ccggtcaccaaagagcag 108
|||| |||||||||||||
Sbjct: 914 ccggccaccaaagagcag 931
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_301_length_246_cov_1.25444_ID_5772
(246 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISRso21 | ISL3 | Ralstonia solanacearum | 32 | 0.31 | |
| ISCysp13 | IS200/IS605 | Cyanothece sp. | 32 | 0.31 | |
| ISShfr9 | Tn3 | Shewanella frigidimarina | 32 | 0.31 | |
| ISRtr5 | IS66 | Rhizobium tropici | 30 | 1.2 | |
| ISBps3 | IS5 | IS903 | Burkholderia pseudomallei | 30 | 1.2 |
| ISMpo10 | Tn3 | Methylobacterium populi | 30 | 1.2 | |
| ISMlo2 | IS110 | IS1111 | Mesorhizobium loti | 30 | 1.2 |
| ISCsa7 | ISNCY | Caldicellulosiruptor saccharolyticus | 28 | 4.8 | |
| ISUnCu14 | IS66 | Uncultured bacterium | 28 | 4.8 | |
| ISPso1 | IS256 | Paracoccus solventivorans | 28 | 4.8 | |
| ISMtsp4 | IS30 | Methylobacterium sp. | 28 | 4.8 | |
| ISApr8 | IS1380 | alpha proteobacterium | 28 | 4.8 | |
| ISBth7 | IS1182 | Bacillus thuringiensis | 28 | 4.8 | |
| ISMdi27 | IS21 | Methylobacterium dichloromethanicum | 28 | 4.8 | |
| ISMex38 | Tn3 | Methylobacterium extorquens | 28 | 4.8 | |
| ISCARN57 | IS110 | Metagenomic data from CARNOULES | 28 | 4.8 | |
| ISCARN42 | IS701 | Metagenomic data from CARNOULES | 28 | 4.8 | |
| ISSba9 | IS256 | Shewanella baltica | 28 | 4.8 | |
| ISFsp10 | IS66 | ISBst12 | Frankia sp. | 28 | 4.8 |
| ISMbu12 | IS66 | ISBst12 | Methanococcoides burtonii | 28 | 4.8 |
| ISSpo2 | IS1380 | Silicibacter pomeroyi | 28 | 4.8 | |
| ISMbu5 | IS66 | ISBst12 | Methanococcoides burtonii | 28 | 4.8 |
| ISRsp2 | IS21 | - | Rhizobium sp. | 28 | 4.8 |
>ISRso21
Length = 2032
Score = 32.2 bits (16), Expect = 0.31
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 115 gcagctcaacgccgaa 130
||||||||||||||||
Sbjct: 1004 gcagctcaacgccgaa 1019
>ISCysp13
Length = 1836
Score = 32.2 bits (16), Expect = 0.31
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 145 ggactcaatgtccgaa 160
||||||||||||||||
Sbjct: 64 ggactcaatgtccgaa 79
>ISShfr9
Length = 3213
Score = 32.2 bits (16), Expect = 0.31
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 76 tcacaaaaacaaaaag 91
||||||||||||||||
Sbjct: 435 tcacaaaaacaaaaag 450
>ISRtr5
Length = 2577
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 230 gccggcgcggtcatc 244
|||||||||||||||
Sbjct: 379 gccggcgcggtcatc 393
>ISBps3
Length = 1133
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 49 ctttcacctgccgct 63
|||||||||||||||
Sbjct: 338 ctttcacctgccgct 352
>ISMpo10
Length = 4911
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 196 tcgcgcgctcgcccg 210
|||||||||||||||
Sbjct: 3852 tcgcgcgctcgcccg 3866
>ISMlo2
Length = 1402
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 177 gcggcgcgcgccgag 191
|||||||||||||||
Sbjct: 1116 gcggcgcgcgccgag 1102
>ISCsa7
Length = 1118
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 77 cacaaaaacaaaaa 90
||||||||||||||
Sbjct: 144 cacaaaaacaaaaa 157
>ISUnCu14
Length = 2442
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 203 ctcgcccgcctcga 216
||||||||||||||
Sbjct: 2046 ctcgcccgcctcga 2059
>ISPso1
Length = 1400
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 201 cgctcgcccgcctc 214
||||||||||||||
Sbjct: 1288 cgctcgcccgcctc 1301
>ISMtsp4
Length = 1455
Score = 28.2 bits (14), Expect = 4.8
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 193 cgatcgcgcgctcgcccg 210
|||||||||||| |||||
Sbjct: 1108 cgatcgcgcgcttgcccg 1125
>ISApr8
Length = 1667
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 157 cgaaggcggcatcg 170
||||||||||||||
Sbjct: 808 cgaaggcggcatcg 795
>ISBth7
Length = 1560
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 78 acaaaaacaaaaag 91
||||||||||||||
Sbjct: 1192 acaaaaacaaaaag 1205
>ISMdi27
Length = 2476
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 203 ctcgcccgcctcga 216
||||||||||||||
Sbjct: 2071 ctcgcccgcctcga 2084
>ISMex38
Length = 3841
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 177 gcggcgcgcgccga 190
||||||||||||||
Sbjct: 2026 gcggcgcgcgccga 2039
>ISCARN57
Length = 1211
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 182 gcgcgccgagtcga 195
||||||||||||||
Sbjct: 901 gcgcgccgagtcga 888
>ISCARN42
Length = 1473
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 202 gctcgcccgcctcg 215
||||||||||||||
Sbjct: 1404 gctcgcccgcctcg 1417
>ISSba9
Length = 1296
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 209 cgcctcgaaaaaat 222
||||||||||||||
Sbjct: 1157 cgcctcgaaaaaat 1170
>ISFsp10
Length = 1713
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 198 gcgcgctcgcccgc 211
||||||||||||||
Sbjct: 1242 gcgcgctcgcccgc 1255
>ISMbu12
Length = 1633
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 79 caaaaacaaaaagc 92
||||||||||||||
Sbjct: 385 caaaaacaaaaagc 398
>ISSpo2
Length = 1664
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 157 cgaaggcggcatcg 170
||||||||||||||
Sbjct: 809 cgaaggcggcatcg 796
>ISMbu5
Length = 1696
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 79 caaaaacaaaaagc 92
||||||||||||||
Sbjct: 385 caaaaacaaaaagc 398
>ISRsp2
Length = 2623
Score = 28.2 bits (14), Expect = 4.8
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 199 cgcgctcgcccgcctcga 216
|||||| |||||||||||
Sbjct: 2169 cgcgcttgcccgcctcga 2186
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_302_length_246_cov_0.751479_ID_5774
(246 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISStma11 | ISL3 | Stenotrophomonas maltophilia | 34 | 0.078 | |
| ISMtu1 | IS256 | Mycobacterium tusciae | 32 | 0.31 | |
| ISHar2 | IS3 | IS3 | Herminiimonas arsenicoxydans | 32 | 0.31 |
| ISNmu3 | IS3 | IS2 | Nitrosospira multiformis | 32 | 0.31 |
| ISBdi2 | IS1380 | Bradyrhizobium diazoefficiens | 30 | 1.2 | |
| TnAs2 | Tn3 | Aeromonas salmonicida | 30 | 1.2 | |
| ISPsp8 | IS30 | Pseudomonas sp. | 30 | 1.2 | |
| ISMyo1 | IS256 | Mycobacterium yongonense | 30 | 1.2 | |
| ISNha3 | IS1380 | Nitrobacter hamburgensis | 30 | 1.2 | |
| ISTth6 | IS630 | Thermus thermophilus | 30 | 1.2 | |
| ISSpma1 | IS3 | IS407 | Sphingopyxis macrogoltabida | 30 | 1.2 |
| ISMamg1 | IS3 | IS407 | Magnetospirillum magneticum | 30 | 1.2 |
| ISCausp1 | IS3 | IS3 | Caulobacter sp. | 30 | 1.2 |
| TnAs3 | Tn3 | Aeromonas salmonicida | 28 | 4.8 | |
| ISNin1 | IS200/IS605 | IS605 | Natronolimnobius innermongolicus | 28 | 4.8 |
| ISHje2 | IS200/IS605 | IS605 | Halalkalicoccus jeotgali | 28 | 4.8 |
| ISHbo4 | IS200/IS605 | IS605 | Halogeometricum borinquense | 28 | 4.8 |
| ISHmu6 | IS200/IS605 | Halomicrobium mukohataei | 28 | 4.8 | |
| ISAzs25 | IS1380 | Azospirillum sp. | 28 | 4.8 | |
| ISAzs7 | IS66 | ISBst12 | Azospirillum sp. | 28 | 4.8 |
| ISCaa6 | IS5 | ISL2 | Candidatus Amoebophilus asiaticus | 28 | 4.8 |
| ISBmu20 | IS5 | IS5 | Burkholderia multivorans | 28 | 4.8 |
| ISPfr9 | IS30 | Propionibacterium freudenreichii | 28 | 4.8 | |
| ISMch1 | IS3 | IS150 | Methylobacterium chloromethanicum | 28 | 4.8 |
| ISPosp7 | IS1380 | Polaromonas sp. | 28 | 4.8 | |
| ISAnsp4 | IS21 | Anaeromyxobacter sp. | 28 | 4.8 | |
| ISStma14 | IS3 | IS3 | Stenotrophomonas maltophilia | 28 | 4.8 |
| ISAzo15 | IS66 | Azoarcus sp. | 28 | 4.8 | |
| ISCARN27 | IS256 | Metagenomic data from CARNOULES | 28 | 4.8 | |
| ISCARN26 | IS110 | Metagenomic data from CARNOULES | 28 | 4.8 | |
| ISSba18 | IS6 | Shewanella baltica | 28 | 4.8 | |
| ISRhsp5 | IS66 | Rhodobacter sphaeroides | 28 | 4.8 | |
| ISRosp4 | IS66 | Roseobacter sp. | 28 | 4.8 | |
| ISMno2 | IS66 | ISBst12 | Methylobacterium nodulans | 28 | 4.8 |
| ISAli1 | IS5 | IS1031 | Azospirillum lipoferum | 28 | 4.8 |
| ISRta2 | IS256 | Ralstonia taiwanensis | 28 | 4.8 | |
| ISGlo3 | IS481 | Geobacter lovleyi | 28 | 4.8 | |
| ISRhosp2 | IS701 | Rhodococcus sp. | 28 | 4.8 | |
| ISCbe3 | IS21 | Caldicellulosiruptor bescii | 28 | 4.8 | |
| ISPsy17 | IS256 | Pseudomonas syringae | 28 | 4.8 | |
| ISHma12 | IS200/IS605 | Haloarcula marismortui | 28 | 4.8 | |
| ISMpa1 | IS110 | Mycobacterium avium | 28 | 4.8 | |
| ISBlo9 | IS3 | IS150 | Bifidobacterium longum | 28 | 4.8 |
| ISPpu7 | IS21 | - | Pseudomonas putida | 28 | 4.8 |
| IS1491 | IS21 | - | Pseudomonas alcaligenes | 28 | 4.8 |
| IS1489v1 | ISL3 | - | Pseudomonas putida | 28 | 4.8 |
| IS1413 | IS256 | - | Burkholderia cepacia | 28 | 4.8 |
>ISStma11
Length = 4621
Score = 34.2 bits (17), Expect = 0.078
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 150 gcatcggcaagctgcgc 166
|||||||||||||||||
Sbjct: 3041 gcatcggcaagctgcgc 3057
>ISMtu1
Length = 1474
Score = 32.2 bits (16), Expect = 0.31
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 118 cggtgcgccacggcag 133
||||||||||||||||
Sbjct: 344 cggtgcgccacggcag 359
>ISHar2
Length = 1249
Score = 32.2 bits (16), Expect = 0.31
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 152 atcggcaagctgcgcc 167
||||||||||||||||
Sbjct: 660 atcggcaagctgcgcc 645
>ISNmu3
Length = 1323
Score = 32.2 bits (16), Expect = 0.31
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 155 ggcaagctgcgccatt 170
||||||||||||||||
Sbjct: 1201 ggcaagctgcgccatt 1186
>ISBdi2
Length = 1622
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 71 ccgcagatgatcgag 85
|||||||||||||||
Sbjct: 397 ccgcagatgatcgag 383
>TnAs2
Length = 8650
Score = 30.2 bits (15), Expect = 1.2
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 208 gctgggccagcagctgctc 226
|||||||||||||| ||||
Sbjct: 2211 gctgggccagcagccgctc 2193
>ISPsp8
Length = 1113
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 154 cggcaagctgcgcca 168
|||||||||||||||
Sbjct: 349 cggcaagctgcgcca 363
>ISMyo1
Length = 1472
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 118 cggtgcgccacggca 132
|||||||||||||||
Sbjct: 341 cggtgcgccacggca 355
>ISNha3
Length = 1631
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 71 ccgcagatgatcgag 85
|||||||||||||||
Sbjct: 398 ccgcagatgatcgag 384
>ISTth6
Length = 1056
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 17 aggtagggggaaggg 31
|||||||||||||||
Sbjct: 595 aggtagggggaaggg 581
>ISSpma1
Length = 1275
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 151 catcggcaagctgcg 165
|||||||||||||||
Sbjct: 96 catcggcaagctgcg 110
>ISMamg1
Length = 1256
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 69 agccgcagatgatcg 83
|||||||||||||||
Sbjct: 848 agccgcagatgatcg 862
>ISCausp1
Length = 1262
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 136 gcggcgtctggccgg 150
|||||||||||||||
Sbjct: 402 gcggcgtctggccgg 416
>TnAs3
Length = 18735
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 208 gctgggccagcagc 221
||||||||||||||
Sbjct: 2229 gctgggccagcagc 2216
>ISNin1
Length = 1902
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 128 cggcaggggcggcg 141
||||||||||||||
Sbjct: 1613 cggcaggggcggcg 1626
>ISHje2
Length = 1837
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 169 ttcggtcggcgctc 182
||||||||||||||
Sbjct: 48 ttcggtcggcgctc 35
>ISHbo4
Length = 1835
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 169 ttcggtcggcgctc 182
||||||||||||||
Sbjct: 46 ttcggtcggcgctc 33
>ISHmu6
Length = 1889
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 169 ttcggtcggcgctc 182
||||||||||||||
Sbjct: 46 ttcggtcggcgctc 33
>ISAzs25
Length = 1614
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 139 gcgtctggccggca 152
||||||||||||||
Sbjct: 249 gcgtctggccggca 262
>ISAzs7
Length = 1455
Score = 28.2 bits (14), Expect = 4.8
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 150 gcatcggcaagctgcgcc 167
|||||||||||| |||||
Sbjct: 1044 gcatcggcaagcggcgcc 1061
>ISCaa6
Length = 989
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 156 gcaagctgcgccat 169
||||||||||||||
Sbjct: 208 gcaagctgcgccat 221
>ISBmu20
Length = 1158
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 146 gccggcatcggcaa 159
||||||||||||||
Sbjct: 725 gccggcatcggcaa 712
>ISPfr9
Length = 1484
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 135 ggcggcgtctggcc 148
||||||||||||||
Sbjct: 1074 ggcggcgtctggcc 1061
>ISMch1
Length = 1294
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 73 gcagatgatcgagc 86
||||||||||||||
Sbjct: 365 gcagatgatcgagc 378
>ISPosp7
Length = 1612
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 212 ggccagcagctgct 225
||||||||||||||
Sbjct: 651 ggccagcagctgct 664
>ISAnsp4
Length = 2195
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 200 gcccgcgagctggg 213
||||||||||||||
Sbjct: 195 gcccgcgagctggg 208
>ISStma14
Length = 1231
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 144 tggccggcatcggc 157
||||||||||||||
Sbjct: 578 tggccggcatcggc 565
>ISAzo15
Length = 2441
Score = 28.2 bits (14), Expect = 4.8
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 67 acagccgcagatgatcga 84
||||| ||||||||||||
Sbjct: 1476 acagcggcagatgatcga 1459
>ISCARN27
Length = 1356
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 150 gcatcggcaagctg 163
||||||||||||||
Sbjct: 312 gcatcggcaagctg 325
>ISCARN26
Length = 1214
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 144 tggccggcatcggc 157
||||||||||||||
Sbjct: 830 tggccggcatcggc 843
>ISSba18
Length = 829
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 218 cagctgctcaggca 231
||||||||||||||
Sbjct: 408 cagctgctcaggca 421
>ISRhsp5
Length = 2528
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 211 gggccagcagctgc 224
||||||||||||||
Sbjct: 1627 gggccagcagctgc 1614
>ISRosp4
Length = 2709
Score = 28.2 bits (14), Expect = 4.8
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 204 gcgagctgggccagcagc 221
|||| |||||||||||||
Sbjct: 1580 gcgacctgggccagcagc 1563
>ISMno2
Length = 1419
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 112 cgacgacggtgcgc 125
||||||||||||||
Sbjct: 1329 cgacgacggtgcgc 1316
>ISAli1
Length = 933
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 179 gctctcaagacggg 192
||||||||||||||
Sbjct: 876 gctctcaagacggg 889
>ISRta2
Length = 1386
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 107 ctgaccgacgacgg 120
||||||||||||||
Sbjct: 307 ctgaccgacgacgg 320
>ISGlo3
Length = 1076
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 78 tgatcgagctgcgc 91
||||||||||||||
Sbjct: 315 tgatcgagctgcgc 328
>ISRhosp2
Length = 1361
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 233 gtagtggctggcgc 246
||||||||||||||
Sbjct: 1329 gtagtggctggcgc 1316
>ISCbe3
Length = 2148
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 54 atgttaagaaaaaa 67
||||||||||||||
Sbjct: 384 atgttaagaaaaaa 397
>ISPsy17
Length = 1374
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 107 ctgaccgacgacgg 120
||||||||||||||
Sbjct: 306 ctgaccgacgacgg 319
>ISHma12
Length = 1835
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 169 ttcggtcggcgctc 182
||||||||||||||
Sbjct: 46 ttcggtcggcgctc 33
>ISMpa1
Length = 1500
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 128 cggcaggggcggcg 141
||||||||||||||
Sbjct: 937 cggcaggggcggcg 924
>ISBlo9
Length = 1226
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 78 tgatcgagctgcgc 91
||||||||||||||
Sbjct: 268 tgatcgagctgcgc 281
>ISPpu7
Length = 2598
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 140 cgtctggccggcat 153
||||||||||||||
Sbjct: 633 cgtctggccggcat 620
>IS1491
Length = 2481
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 140 cgtctggccggcat 153
||||||||||||||
Sbjct: 563 cgtctggccggcat 550
>IS1489v1
Length = 1898
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 151 catcggcaagctgc 164
||||||||||||||
Sbjct: 1531 catcggcaagctgc 1544
>IS1413
Length = 1429
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 115 cgacggtgcgccac 128
||||||||||||||
Sbjct: 1171 cgacggtgcgccac 1184
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_303_length_246_cov_0.668639_ID_5776
(246 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISNml2 | IS1380 | Nakamurella multipartita | 32 | 0.31 | |
| ISGdi15 | IS110 | IS1111 | Gluconacetobacter diazotrophicus | 32 | 0.31 |
| ISPko1 | IS5 | IS903 | Paracoccus kondratievae | 30 | 1.2 |
| ISCph13 | IS5 | IS5 | Chlorobium phaeobacteroides | 30 | 1.2 |
| ISCph12 | IS5 | IS5 | Chlorobium phaeobacteroides | 30 | 1.2 |
| ISMno13 | IS66 | Methylobacterium nodulans | 30 | 1.2 | |
| ISAar45 | IS3 | IS3 | Arthrobacter arilaitensis | 30 | 1.2 |
| ISStma14 | IS3 | IS3 | Stenotrophomonas maltophilia | 30 | 1.2 |
| ISAzo11 | IS5 | IS5 | Azoarcus sp. | 30 | 1.2 |
| ISCARN17 | IS21 | Metagenomic data from CARNOULES | 30 | 1.2 | |
| ISPosp2 | IS701 | Polaromonas sp. | 30 | 1.2 | |
| ISMpa1 | IS110 | Mycobacterium avium | 30 | 1.2 | |
| ISMav1 | IS21 | - | Mycobacterium avium | 30 | 1.2 |
| IS71 | IS66 | - | Agrobacterium tumefaciens | 30 | 1.2 |
| IS1612 | IS21 | - | Mycobacterium avium | 30 | 1.2 |
| TnAs3 | Tn3 | Aeromonas salmonicida | 28 | 4.8 | |
| ISTco1 | ISLre2 | Thermobacillus composti | 28 | 4.8 | |
| ISPa43 | Tn3 | Pseudomonas aeruginosa | 28 | 4.8 | |
| ISAzs29 | Tn3 | Azospirillum sp. | 28 | 4.8 | |
| ISAzs23 | IS3 | IS3 | Azospirillum sp. | 28 | 4.8 |
| ISBam3 | IS5 | IS903 | Burkholderia ambifaria | 28 | 4.8 |
| ISGeob3 | IS5 | ISL2 | Geodermatophilus obscurus | 28 | 4.8 |
| ISBdo1 | IS1182 | Burkholderia dolosa | 28 | 4.8 | |
| ISGho1 | IS1182 | Grimontia hollisae | 28 | 4.8 | |
| ISMtsp7 | IS110 | IS1111 | Methylobacterium sp. | 28 | 4.8 |
| ISBrsp2 | IS1182 | Bradyrhizobium sp. | 28 | 4.8 | |
| ISBma2 | IS1182 | Burkholderia mallei | 28 | 4.8 | |
| ISMdi12 | IS110 | IS1111 | Methylobacterium dichloromethanicum | 28 | 4.8 |
| ISMex26 | ISL3 | Methylobacterium extorquens | 28 | 4.8 | |
| ISStma9 | IS3 | IS51 | Stenotrophomonas maltophilia | 28 | 4.8 |
| ISAzo17 | IS21 | Azoarcus sp. | 28 | 4.8 | |
| ISCARN42 | IS701 | Metagenomic data from CARNOULES | 28 | 4.8 | |
| ISOt4 | IS982 | Orientia tsutsugamushi | 28 | 4.8 | |
| ISAfe7 | IS3 | IS51 | Acidithiobacillus ferrooxidans | 28 | 4.8 |
| ISSbe3 | IS66 | ISBst12 | Shewanella benthica | 28 | 4.8 |
| ISMrsp4 | IS66 | ISBst12 | Marinobacter sp. | 28 | 4.8 |
| ISSst2 | IS1595 | ISNha5 | Sagittula stellata | 28 | 4.8 |
| ISNha5 | IS1595 | ISNha5 | Nitrobacter hamburgensis | 28 | 4.8 |
| ISRpa4 | IS1595 | ISNha5 | Rhodopseudomonas palustris | 28 | 4.8 |
| ISMtsp1 | IS6 | Methylobacterium sp. | 28 | 4.8 | |
| ISGka2 | IS110 | Geobacillus kaustophilus | 28 | 4.8 | |
| ISBmu2 | IS5 | IS5 | Burkholderia multivorans | 28 | 4.8 |
| ISPpu7 | IS21 | - | Pseudomonas putida | 28 | 4.8 |
| IS2621 | IS4 | ISPepr1 | Deinococcus radiodurans | 28 | 4.8 |
| IS1474 | IS21 | - | Pseudomonas alcaligenes | 28 | 4.8 |
>ISNml2
Length = 1689
Score = 32.2 bits (16), Expect = 0.31
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 140 gaggccgtggcgcaag 155
||||||||||||||||
Sbjct: 258 gaggccgtggcgcaag 273
>ISGdi15
Length = 1602
Score = 32.2 bits (16), Expect = 0.31
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 138 gcgaggccgtggcgca 153
||||||||||||||||
Sbjct: 608 gcgaggccgtggcgca 623
>ISPko1
Length = 1050
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 27 accgcgccggcggtg 41
|||||||||||||||
Sbjct: 761 accgcgccggcggtg 747
>ISCph13
Length = 1636
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 80 ggctgcggccttgcc 94
|||||||||||||||
Sbjct: 1065 ggctgcggccttgcc 1051
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 173 gtttggcatgaagc 186
||||||||||||||
Sbjct: 1074 gtttggcatgaagc 1087
>ISCph12
Length = 1635
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 80 ggctgcggccttgcc 94
|||||||||||||||
Sbjct: 1064 ggctgcggccttgcc 1050
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 173 gtttggcatgaagc 186
||||||||||||||
Sbjct: 1073 gtttggcatgaagc 1086
>ISMno13
Length = 2459
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 27 accgcgccggcggtg 41
|||||||||||||||
Sbjct: 1145 accgcgccggcggtg 1159
>ISAar45
Length = 1280
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 79 aggctgcggccttgc 93
|||||||||||||||
Sbjct: 332 aggctgcggccttgc 318
>ISStma14
Length = 1231
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 92 gccggcatcggccag 106
|||||||||||||||
Sbjct: 576 gccggcatcggccag 562
>ISAzo11
Length = 1280
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 33 ccggcggtgtcgccc 47
|||||||||||||||
Sbjct: 1181 ccggcggtgtcgccc 1167
>ISCARN17
Length = 2539
Score = 30.2 bits (15), Expect = 1.2
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 142 ggccgtggcgcaaggtgtg 160
|||| ||||||||||||||
Sbjct: 1513 ggccatggcgcaaggtgtg 1531
>ISPosp2
Length = 1484
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 92 gccggcatcggccag 106
|||||||||||||||
Sbjct: 663 gccggcatcggccag 649
>ISMpa1
Length = 1500
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 89 cttgccggcatcggc 103
|||||||||||||||
Sbjct: 352 cttgccggcatcggc 366
>ISMav1
Length = 2536
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 78 aaggctgcggccttg 92
|||||||||||||||
Sbjct: 1909 aaggctgcggccttg 1895
>IS71
Length = 2386
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 209 gtcggtcatcccgcg 223
|||||||||||||||
Sbjct: 1195 gtcggtcatcccgcg 1181
>IS1612
Length = 2532
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 78 aaggctgcggccttg 92
|||||||||||||||
Sbjct: 1905 aaggctgcggccttg 1891
>TnAs3
Length = 18735
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 139 cgaggccgtggcgc 152
||||||||||||||
Sbjct: 5890 cgaggccgtggcgc 5903
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 88 ccttgccggcatcg 101
||||||||||||||
Sbjct: 11650 ccttgccggcatcg 11637
>ISTco1
Length = 1591
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 204 gctttgtcggtcat 217
||||||||||||||
Sbjct: 917 gctttgtcggtcat 930
>ISPa43
Length = 19903
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 94 cggcatcggccagg 107
||||||||||||||
Sbjct: 7277 cggcatcggccagg 7290
>ISAzs29
Length = 3897
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 26 caccgcgccggcgg 39
||||||||||||||
Sbjct: 3594 caccgcgccggcgg 3607
>ISAzs23
Length = 1596
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 91 tgccggcatcggcc 104
||||||||||||||
Sbjct: 1358 tgccggcatcggcc 1371
>ISBam3
Length = 1133
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 145 cgtggcgcaaggtg 158
||||||||||||||
Sbjct: 577 cgtggcgcaaggtg 590
>ISGeob3
Length = 970
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 84 gcggccttgccggc 97
||||||||||||||
Sbjct: 447 gcggccttgccggc 434
>ISBdo1
Length = 1572
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 230 gagcgcagcttcgc 243
||||||||||||||
Sbjct: 1266 gagcgcagcttcgc 1279
>ISGho1
Length = 1618
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 230 gagcgcagcttcgc 243
||||||||||||||
Sbjct: 1297 gagcgcagcttcgc 1310
>ISMtsp7
Length = 1316
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 142 ggccgtggcgcaag 155
||||||||||||||
Sbjct: 227 ggccgtggcgcaag 214
>ISBrsp2
Length = 1547
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 92 gccggcatcggcca 105
||||||||||||||
Sbjct: 908 gccggcatcggcca 895
>ISBma2
Length = 1573
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 230 gagcgcagcttcgc 243
||||||||||||||
Sbjct: 1264 gagcgcagcttcgc 1277
>ISMdi12
Length = 1371
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 186 ccgcccgatgagaa 199
||||||||||||||
Sbjct: 854 ccgcccgatgagaa 841
>ISMex26
Length = 1676
Score = 28.2 bits (14), Expect = 4.8
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 135 acggcgaggccgtggcgc 152
|||||||||||| |||||
Sbjct: 723 acggcgaggccgcggcgc 740
>ISStma9
Length = 1234
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 120 aaggcaaaggcgat 133
||||||||||||||
Sbjct: 200 aaggcaaaggcgat 213
>ISAzo17
Length = 2095
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 230 gagcgcagcttcgc 243
||||||||||||||
Sbjct: 587 gagcgcagcttcgc 600
>ISCARN42
Length = 1473
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 92 gccggcatcggcca 105
||||||||||||||
Sbjct: 665 gccggcatcggcca 652
>ISOt4
Length = 988
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 10 cgttctttaattga 23
||||||||||||||
Sbjct: 804 cgttctttaattga 817
>ISAfe7
Length = 1329
Score = 28.2 bits (14), Expect = 4.8
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 171 gcgtttggcatgaagccg 188
|||| |||||||||||||
Sbjct: 481 gcgtgtggcatgaagccg 464
>ISSbe3
Length = 1714
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 91 tgccggcatcggcc 104
||||||||||||||
Sbjct: 1254 tgccggcatcggcc 1241
>ISMrsp4
Length = 1725
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 146 gtggcgcaaggtgt 159
||||||||||||||
Sbjct: 1294 gtggcgcaaggtgt 1307
>ISSst2
Length = 3454
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 65 gccgtcttcataaa 78
||||||||||||||
Sbjct: 1415 gccgtcttcataaa 1428
>ISNha5
Length = 3904
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 139 cgaggccgtggcgc 152
||||||||||||||
Sbjct: 1781 cgaggccgtggcgc 1768
>ISRpa4
Length = 4218
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 107 ggcaggcagcgaga 120
||||||||||||||
Sbjct: 1210 ggcaggcagcgaga 1223
>ISMtsp1
Length = 893
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 160 gggcgcgagaagcg 173
||||||||||||||
Sbjct: 515 gggcgcgagaagcg 502
>ISGka2
Length = 1561
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 179 catgaagccgcccg 192
||||||||||||||
Sbjct: 420 catgaagccgcccg 433
>ISBmu2
Length = 1210
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 56 gcgggcaaggccgt 69
||||||||||||||
Sbjct: 786 gcgggcaaggccgt 799
>ISPpu7
Length = 2598
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 95 ggcatcggccaggg 108
||||||||||||||
Sbjct: 2390 ggcatcggccaggg 2377
>IS2621
Length = 1322
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 158 gtgggcgcgagaag 171
||||||||||||||
Sbjct: 861 gtgggcgcgagaag 874
>IS1474
Length = 2633
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 95 ggcatcggccaggg 108
||||||||||||||
Sbjct: 2447 ggcatcggccaggg 2434
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_304_length_245_cov_0.869048_ID_5778
(245 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISGob1 | IS66 | ISBst12 | Gemmata obscuriglobus | 30 | 1.2 |
| ISAsp9 | IS200/IS605 | IS1341 | Anabaena sp. | 28 | 4.8 |
| ISPa43 | Tn3 | Pseudomonas aeruginosa | 28 | 4.8 | |
| ISPfe1 | IS3 | IS407 | Paracoccus ferrooxidans | 28 | 4.8 |
| ISGau7 | IS21 | Gemmatimonas aurantiaca | 28 | 4.8 | |
| ISSysp4 | IS5 | IS5 | Synechococcus sp. | 28 | 4.8 |
| ISSlsp2 | IS5 | IS5 | Sulfurovum sp. | 28 | 4.8 |
| ISMdi10 | IS110 | IS1111 | Methylobacterium dichloromethanicum | 28 | 4.8 |
| ISRta4 | IS110 | Ralstonia taiwanensis | 28 | 4.8 | |
| ISMesp1 | IS1595 | ISNwi1 | Mesorhizobium sp. | 28 | 4.8 |
| ISRssp1 | IS3 | IS407 | Roseovarius sp. | 28 | 4.8 |
| ISPto3 | IS4 | ISPepr1 | Psychroflexus torquis | 28 | 4.8 |
>ISGob1
Length = 1575
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 72 gccggtggcaccggt 86
|||||||||||||||
Sbjct: 514 gccggtggcaccggt 500
>ISAsp9
Length = 1591
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 47 gagaagtttggcag 60
||||||||||||||
Sbjct: 1198 gagaagtttggcag 1211
>ISPa43
Length = 19903
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 77 tggcaccggtcaag 90
||||||||||||||
Sbjct: 5220 tggcaccggtcaag 5207
>ISPfe1
Length = 1248
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 134 ggcctgtcacgccg 147
||||||||||||||
Sbjct: 450 ggcctgtcacgccg 437
>ISGau7
Length = 2510
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 151 gtcttgggatcgag 164
||||||||||||||
Sbjct: 1268 gtcttgggatcgag 1255
>ISSysp4
Length = 1724
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 39 ggctgccagagaag 52
||||||||||||||
Sbjct: 463 ggctgccagagaag 476
>ISSlsp2
Length = 1570
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 222 cttgtgtgctttgc 235
||||||||||||||
Sbjct: 970 cttgtgtgctttgc 957
>ISMdi10
Length = 1186
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 132 ccggcctgtcacgc 145
||||||||||||||
Sbjct: 562 ccggcctgtcacgc 549
>ISRta4
Length = 1915
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 109 tggtagttcagttg 122
||||||||||||||
Sbjct: 454 tggtagttcagttg 467
>ISMesp1
Length = 2601
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 132 ccggcctgtcacgc 145
||||||||||||||
Sbjct: 2538 ccggcctgtcacgc 2551
>ISRssp1
Length = 1253
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 150 ggtcttgggatcga 163
||||||||||||||
Sbjct: 432 ggtcttgggatcga 419
>ISPto3
Length = 1572
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 179 tactatatacttca 192
||||||||||||||
Sbjct: 1174 tactatatacttca 1161
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_305_length_245_cov_0.869048_ID_5780
(245 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| TnAs3 | Tn3 | Aeromonas salmonicida | 30 | 1.2 | |
| TnAs2 | Tn3 | Aeromonas salmonicida | 30 | 1.2 | |
| ISMyo1 | IS256 | Mycobacterium yongonense | 30 | 1.2 | |
| ISPso1 | IS256 | Paracoccus solventivorans | 30 | 1.2 | |
| IS692 | IS66 | Agrobacterium tumefaciens | 30 | 1.2 | |
| ISSce1 | IS1 | ISMhu11 | Sorangium cellulosum | 30 | 1.2 |
| ISRtr5 | IS66 | Rhizobium tropici | 28 | 4.8 | |
| ISKpn24 | IS66 | Klebsiella pneumoniae | 28 | 4.8 | |
| ISLfe2 | ISKra4 | ISKra4 | Leptospirillum ferrodiazotrophum | 28 | 4.8 |
| ISBmu23 | IS5 | IS5 | Burkholderia multivorans | 28 | 4.8 |
| ISMtsp8 | IS21 | Methylobacterium sp. | 28 | 4.8 | |
| ISMch1 | IS3 | IS150 | Methylobacterium chloromethanicum | 28 | 4.8 |
| ISCgl4 | IS1380 | Corynebacterium glutamicum | 28 | 4.8 | |
| ISMex31 | IS110 | IS1111 | Methylobacterium extorquens | 28 | 4.8 |
| ISMdi5 | IS3 | IS3 | Methylobacterium dichloromethanicum | 28 | 4.8 |
| ISThsp15 | IS630 | Thiomonas sp. | 28 | 4.8 | |
| ISThsp12 | IS1634 | Thiomonas sp. | 28 | 4.8 | |
| ISCARN100 | IS1595 | ISSod11 | Metagenomic data from CARNOULES | 28 | 4.8 |
| ISAzo22 | IS110 | Azoarcus sp. | 28 | 4.8 | |
| ISThsp5 | IS21 | Thiomonas sp. | 28 | 4.8 | |
| ISCARN17 | IS21 | Metagenomic data from CARNOULES | 28 | 4.8 | |
| ISPa29 | IS110 | IS1111 | Pseudomonas aeruginosa | 28 | 4.8 |
| ISAli16 | IS110 | Azospirillum lipoferum | 28 | 4.8 | |
| ISApu2 | IS4 | ISH8 | Aeromonas punctata | 28 | 4.8 |
| ISRtr4 | IS5 | IS1031 | Rhizobium tropici | 28 | 4.8 |
| ISMyma5 | IS481 | - | Mycobacterium marinum | 28 | 4.8 |
| ISC1332 | IS256 | Sulfolobus solfataricus | 28 | 4.8 | |
| ISAzo5 | IS4 | IS50 | Azoarcus sp. | 28 | 4.8 |
| ISMt2 | IS21 | - | Mycobacterium tuberculosis | 28 | 4.8 |
| IS1452 | IS701 | - | Acetobacter pasteurianus | 28 | 4.8 |
| IS1419 | IS481 | - | Burkholderia glumae | 28 | 4.8 |
>TnAs3
Length = 18735
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 25 gatctgcgcgatcac 39
|||||||||||||||
Sbjct: 4086 gatctgcgcgatcac 4100
>TnAs2
Length = 8650
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 191 tcgcgggtctcgaag 205
|||||||||||||||
Sbjct: 1084 tcgcgggtctcgaag 1070
>ISMyo1
Length = 1472
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 57 gcggatggccgccgg 71
|||||||||||||||
Sbjct: 498 gcggatggccgccgg 512
>ISPso1
Length = 1400
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 42 cggcctcaaccttgg 56
|||||||||||||||
Sbjct: 996 cggcctcaaccttgg 982
>IS692
Length = 2563
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 124 ggcgaaacgcaggcc 138
|||||||||||||||
Sbjct: 2065 ggcgaaacgcaggcc 2079
>ISSce1
Length = 4601
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 114 tcgggatgccggcga 128
|||||||||||||||
Sbjct: 3992 tcgggatgccggcga 4006
>ISRtr5
Length = 2577
Score = 28.2 bits (14), Expect = 4.8
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 117 ggatgccggcgaaacgca 134
||||| ||||||||||||
Sbjct: 2056 ggatgacggcgaaacgca 2073
>ISKpn24
Length = 2454
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 116 gggatgccggcgaa 129
||||||||||||||
Sbjct: 1983 gggatgccggcgaa 1996
>ISLfe2
Length = 1803
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 229 ggcgatgtcgttca 242
||||||||||||||
Sbjct: 59 ggcgatgtcgttca 46
>ISBmu23
Length = 1210
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 134 aggcccatgtcggc 147
||||||||||||||
Sbjct: 623 aggcccatgtcggc 636
>ISMtsp8
Length = 2371
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 181 cacctcggcatcgc 194
||||||||||||||
Sbjct: 2286 cacctcggcatcgc 2299
>ISMch1
Length = 1294
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 182 acctcggcatcgcg 195
||||||||||||||
Sbjct: 961 acctcggcatcgcg 948
>ISCgl4
Length = 1653
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 32 gcgatcacaccggc 45
||||||||||||||
Sbjct: 1319 gcgatcacaccggc 1306
>ISMex31
Length = 1091
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 183 cctcggcatcgcgg 196
||||||||||||||
Sbjct: 279 cctcggcatcgcgg 266
>ISMdi5
Length = 1279
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 183 cctcggcatcgcgg 196
||||||||||||||
Sbjct: 9 cctcggcatcgcgg 22
>ISThsp15
Length = 1482
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 14 tcgatggcctggat 27
||||||||||||||
Sbjct: 642 tcgatggcctggat 629
>ISThsp12
Length = 2004
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 12 cttcgatggcctgg 25
||||||||||||||
Sbjct: 446 cttcgatggcctgg 459
>ISCARN100
Length = 1111
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 184 ctcggcatcgcggg 197
||||||||||||||
Sbjct: 1006 ctcggcatcgcggg 1019
>ISAzo22
Length = 1763
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 82 ggccagcaccaacg 95
||||||||||||||
Sbjct: 191 ggccagcaccaacg 178
>ISThsp5
Length = 2652
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 69 cggcttgcagcaag 82
||||||||||||||
Sbjct: 1764 cggcttgcagcaag 1751
>ISCARN17
Length = 2539
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 8 cggccttcgatggc 21
||||||||||||||
Sbjct: 1431 cggccttcgatggc 1418
>ISPa29
Length = 1534
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 75 gcagcaaggccagc 88
||||||||||||||
Sbjct: 474 gcagcaaggccagc 487
>ISAli16
Length = 1153
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 18 tggcctggatctgc 31
||||||||||||||
Sbjct: 746 tggcctggatctgc 733
>ISApu2
Length = 1388
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 76 cagcaaggccagca 89
||||||||||||||
Sbjct: 1129 cagcaaggccagca 1116
>ISRtr4
Length = 932
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 33 cgatcacaccggcc 46
||||||||||||||
Sbjct: 428 cgatcacaccggcc 415
>ISMyma5
Length = 1838
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 23 tggatctgcgcgat 36
||||||||||||||
Sbjct: 1173 tggatctgcgcgat 1186
>ISC1332
Length = 1332
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 133 caggcccatgtcgg 146
||||||||||||||
Sbjct: 1197 caggcccatgtcgg 1210
>ISAzo5
Length = 1478
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 187 ggcatcgcgggtct 200
||||||||||||||
Sbjct: 426 ggcatcgcgggtct 439
>ISMt2
Length = 2645
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 72 cttgcagcaaggcc 85
||||||||||||||
Sbjct: 122 cttgcagcaaggcc 109
>IS1452
Length = 1411
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 37 cacaccggcctcaa 50
||||||||||||||
Sbjct: 651 cacaccggcctcaa 638
>IS1419
Length = 1215
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 231 cgatgtcgttcagc 244
||||||||||||||
Sbjct: 887 cgatgtcgttcagc 874
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_306_length_245_cov_0.869048_ID_5782
(245 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISRhsp1 | IS5 | IS5 | Rhodobacter sphaeroides | 34 | 0.078 |
| ISKpn4 | IS110 | IS1111 | Klebsiella pneumoniae | 32 | 0.31 |
| ISRli1 | ISKra4 | ISAzba1 | Roseobacter litoralis | 30 | 1.2 |
| ISCARN53 | ISNCY | IS1202 | Metagenomic data from CARNOULES | 30 | 1.2 |
| ISFpe1 | IS66 | Fulvimarina pelagi | 30 | 1.2 | |
| IS943 | IS4 | ISPepr1 | Bacteroides fragilis | 30 | 1.2 |
| ISTha3 | IS91 | Thauera sp. | 28 | 4.8 | |
| TnAs3 | Tn3 | Aeromonas salmonicida | 28 | 4.8 | |
| ISRel26 | ISNCY | IS1202 | Rhizobium etli | 28 | 4.8 |
| ISStau8 | IS1182 | Stigmatella aurantiaca | 28 | 4.8 | |
| ISMpo10 | Tn3 | Methylobacterium populi | 28 | 4.8 | |
| ISArsp6 | Tn3 | Arthrobacter sp. | 28 | 4.8 | |
| ISAar7 | IS21 | Arthrobacter arilaitensis | 28 | 4.8 | |
| ISArch1 | IS1182 | Uncultured archaeon | 28 | 4.8 | |
| ISCARN48 | IS66 | Metagenomic data from CARNOULES | 28 | 4.8 | |
| ISGur8 | IS21 | Geobacter uraniumreducens | 28 | 4.8 | |
| ISBlma5 | IS3 | IS407 | Blastopirellula marina | 28 | 4.8 |
| ISAba8 | IS21 | - | Acinetobacter baumannii | 28 | 4.8 |
| ISNph3 | ISH6 | Natronomonas pharaonis | 28 | 4.8 | |
| ISRso9 | IS5 | IS5 | Ralstonia solanacearum | 28 | 4.8 |
| ISRm10-1 | IS630 | - | Sinorhizobium meliloti | 28 | 4.8 |
| IS116 | IS110 | - | Streptomyces clavuligerus | 28 | 4.8 |
>ISRhsp1
Length = 1486
Score = 34.2 bits (17), Expect = 0.078
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 190 cacgctcgcgcagcggc 206
|||||||||||||||||
Sbjct: 852 cacgctcgcgcagcggc 836
>ISKpn4
Length = 1377
Score = 32.2 bits (16), Expect = 0.31
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 199 gcagcggcgaacggcg 214
||||||||||||||||
Sbjct: 827 gcagcggcgaacggcg 842
>ISRli1
Length = 1454
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 118 cgctctgcgacagaa 132
|||||||||||||||
Sbjct: 617 cgctctgcgacagaa 631
>ISCARN53
Length = 1404
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 191 acgctcgcgcagcgg 205
|||||||||||||||
Sbjct: 477 acgctcgcgcagcgg 463
>ISFpe1
Length = 2489
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 210 cggcgatcgtcgccg 224
|||||||||||||||
Sbjct: 187 cggcgatcgtcgccg 201
>IS943
Length = 1557
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 21 ttgctcttccctttc 35
|||||||||||||||
Sbjct: 279 ttgctcttccctttc 293
>ISTha3
Length = 2424
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 209 acggcgatcgtcgc 222
||||||||||||||
Sbjct: 132 acggcgatcgtcgc 119
>TnAs3
Length = 18735
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 143 cggctcggacggca 156
||||||||||||||
Sbjct: 6777 cggctcggacggca 6764
>ISRel26
Length = 1634
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 166 gctcgctcatcgct 179
||||||||||||||
Sbjct: 109 gctcgctcatcgct 96
>ISStau8
Length = 1749
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 184 cttcttcacgctcg 197
||||||||||||||
Sbjct: 758 cttcttcacgctcg 745
>ISMpo10
Length = 4911
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 140 gaccggctcggacg 153
||||||||||||||
Sbjct: 1512 gaccggctcggacg 1525
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 219 tcgccgtaggcgtc 232
||||||||||||||
Sbjct: 2624 tcgccgtaggcgtc 2637
>ISArsp6
Length = 26712
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 5 gaagaccaccggct 18
||||||||||||||
Sbjct: 9911 gaagaccaccggct 9924
>ISAar7
Length = 2983
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 138 gtgaccggctcgga 151
||||||||||||||
Sbjct: 1118 gtgaccggctcgga 1131
>ISArch1
Length = 1736
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 89 atcatgacctttgg 102
||||||||||||||
Sbjct: 255 atcatgacctttgg 242
>ISCARN48
Length = 2581
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 75 cccggcgcgtcgat 88
||||||||||||||
Sbjct: 175 cccggcgcgtcgat 188
>ISGur8
Length = 2775
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 229 cgtcagcgtcggcc 242
||||||||||||||
Sbjct: 1041 cgtcagcgtcggcc 1054
>ISBlma5
Length = 1296
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 51 ctgtcgcccgcttt 64
||||||||||||||
Sbjct: 662 ctgtcgcccgcttt 649
>ISAba8
Length = 1955
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 180 ttcgcttcttcacg 193
||||||||||||||
Sbjct: 1655 ttcgcttcttcacg 1642
>ISNph3
Length = 1449
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 227 ggcgtcagcgtcgg 240
||||||||||||||
Sbjct: 635 ggcgtcagcgtcgg 622
>ISRso9
Length = 1483
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 193 gctcgcgcagcggc 206
||||||||||||||
Sbjct: 180 gctcgcgcagcggc 167
>ISRm10-1
Length = 1042
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 72 agccccggcgcgtc 85
||||||||||||||
Sbjct: 470 agccccggcgcgtc 483
>IS116
Length = 1421
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 186 tcttcacgctcgcg 199
||||||||||||||
Sbjct: 370 tcttcacgctcgcg 357
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_307_length_245_cov_1.0119_ID_5784
(245 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISNamo6 | ISH3 | Natronomonas moolapensis | 30 | 1.2 | |
| ISCARN15 | IS66 | Metagenomic data from CARNOULES | 30 | 1.2 | |
| ISNpe28 | IS1595 | ISH4 | Natrinema pellirubrum | 28 | 4.8 |
| TnAs2 | Tn3 | Aeromonas salmonicida | 28 | 4.8 | |
| ISGvi7 | ISKra4 | ISMich2 | Gloeobacter violaceus | 28 | 4.8 |
| ISHvo13 | IS4 | ISH8 | Haloferax volcanii | 28 | 4.8 |
| ISHvo12 | IS4 | ISH8 | Haloferax volcanii | 28 | 4.8 |
| ISRpa9 | IS5 | IS5 | Rhodopseudomonas palustris | 28 | 4.8 |
| ISMch4 | IS110 | IS1111 | Methylobacterium chloromethanicum | 28 | 4.8 |
| ISMex24 | ISL3 | Methylobacterium extorquens | 28 | 4.8 | |
| ISBusp1 | Tn3 | Burkholderia sp. | 28 | 4.8 | |
| ISMex7 | IS3 | IS150 | Methylobacterium extorquens | 28 | 4.8 |
| ISCARN81 | IS3 | IS3 | Metagenomic data from CARNOULES | 28 | 4.8 |
| ISAzo14 | IS1634 | Azoarcus sp. | 28 | 4.8 | |
| ISSba18 | IS6 | Shewanella baltica | 28 | 4.8 | |
| ISArsp2 | IS481 | Arthrobacter sp. | 28 | 4.8 | |
| ISFsp11 | IS66 | ISBst12 | Frankia sp. | 28 | 4.8 |
| ISSgr1 | IS110 | IS1111 | Streptomyces griseus | 28 | 4.8 |
| ISSav2 | IS701 | Streptomyces avermitilis | 28 | 4.8 | |
| ISRj2 | IS3 | IS150 | Bradyrhizobium japonicum | 28 | 4.8 |
>ISNamo6
Length = 1440
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 204 cgccatcgacctgct 218
|||||||||||||||
Sbjct: 627 cgccatcgacctgct 641
>ISCARN15
Length = 2427
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 160 actgcgccccggcgc 174
|||||||||||||||
Sbjct: 1321 actgcgccccggcgc 1335
>ISNpe28
Length = 944
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 29 gcgatgtcttcgtc 42
||||||||||||||
Sbjct: 643 gcgatgtcttcgtc 630
>TnAs2
Length = 8650
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 199 catgccgccatcga 212
||||||||||||||
Sbjct: 2165 catgccgccatcga 2152
>ISGvi7
Length = 1220
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 201 tgccgccatcgacc 214
||||||||||||||
Sbjct: 596 tgccgccatcgacc 583
>ISHvo13
Length = 1395
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 27 gcgcgatgtcttcg 40
||||||||||||||
Sbjct: 165 gcgcgatgtcttcg 152
>ISHvo12
Length = 1395
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 27 gcgcgatgtcttcg 40
||||||||||||||
Sbjct: 165 gcgcgatgtcttcg 152
>ISRpa9
Length = 1539
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 138 cacccagcgcgcgc 151
||||||||||||||
Sbjct: 421 cacccagcgcgcgc 408
>ISMch4
Length = 1631
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 232 gtgatcgcgcgtca 245
||||||||||||||
Sbjct: 158 gtgatcgcgcgtca 145
>ISMex24
Length = 1677
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 100 ctcgtgaagcgcca 113
||||||||||||||
Sbjct: 1565 ctcgtgaagcgcca 1578
>ISBusp1
Length = 3169
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 120 gcacaacggcgggc 133
||||||||||||||
Sbjct: 814 gcacaacggcgggc 801
>ISMex7
Length = 1285
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 180 gcgcttcatcagcg 193
||||||||||||||
Sbjct: 629 gcgcttcatcagcg 616
>ISCARN81
Length = 1406
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 157 cagactgcgccccg 170
||||||||||||||
Sbjct: 133 cagactgcgccccg 120
>ISAzo14
Length = 1925
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 206 ccatcgacctgctc 219
||||||||||||||
Sbjct: 288 ccatcgacctgctc 275
>ISSba18
Length = 829
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 188 tcagcgctcatcat 201
||||||||||||||
Sbjct: 723 tcagcgctcatcat 710
>ISArsp2
Length = 1373
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 209 tcgacctgctcctg 222
||||||||||||||
Sbjct: 912 tcgacctgctcctg 899
>ISFsp11
Length = 1836
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 207 catcgacctgctcc 220
||||||||||||||
Sbjct: 1311 catcgacctgctcc 1324
>ISSgr1
Length = 1544
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 134 tccacacccagcgc 147
||||||||||||||
Sbjct: 1022 tccacacccagcgc 1035
>ISSav2
Length = 1938
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 202 gccgccatcgacct 215
||||||||||||||
Sbjct: 1440 gccgccatcgacct 1453
>ISRj2
Length = 1364
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 180 gcgcttcatcagcg 193
||||||||||||||
Sbjct: 627 gcgcttcatcagcg 614
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_308_length_245_cov_0.672619_ID_5786
(245 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISVbsp2 | IS5 | IS5 | Vibrio sp. | 34 | 0.078 |
| ISAzs20 | IS66 | Azospirillum sp. | 32 | 0.31 | |
| ISAcp1 | IS5 | IS5 | Acidobacterium capsulatum | 32 | 0.31 |
| ISApr5 | IS6 | Alpha proteobacterium | 32 | 0.31 | |
| ISMme1 | ISAzo13 | Mesorhizobium metallidurans | 30 | 1.2 | |
| ISNph13 | IS200/IS605 | IS1341 | Natronomonas pharaonis | 30 | 1.2 |
| ISDds8 | IS630 | Deinococcus deserti | 30 | 1.2 | |
| ISRosp1 | IS3 | IS3 | Roseobacter sp. | 30 | 1.2 |
| ISRso12 | IS3 | IS407 | Ralstonia solanacearum | 30 | 1.2 |
| ISSna1 | ISNCY | ISDol1 | Streptomyces natalensis | 28 | 4.8 |
| ISPa36 | IS21 | Pseudomonas aeruginosa | 28 | 4.8 | |
| ISPa35 | IS5 | IS903 | Pseudomonas aeruginosa | 28 | 4.8 |
| ISStau8 | IS1182 | Stigmatella aurantiaca | 28 | 4.8 | |
| ISButh4 | IS5 | IS5 | Burkholderia thailandensis | 28 | 4.8 |
| ISRsp18 | IS5 | IS5 | Rhizobium sp. | 28 | 4.8 |
| ISNha6 | IS5 | IS5 | Nitrobacter hamburgensis | 28 | 4.8 |
| ISRhru3 | IS110 | IS1111 | Rhodospirillum rubrum | 28 | 4.8 |
| ISMaq3 | IS1380 | Marinobacter aquaeolei | 28 | 4.8 | |
| ISCARN61 | IS256 | Metagenomic data from CARNOULES | 28 | 4.8 | |
| ISCARN47 | IS256 | Metagenomic data from CARNOULES | 28 | 4.8 | |
| ISCARN23 | IS1634 | Metagenomic data from CARNOULES | 28 | 4.8 | |
| ISGdi6 | IS630 | Gluconacetobacter diazotrophicus | 28 | 4.8 | |
| ISUnCu3 | IS21 | Uncultured bacterium | 28 | 4.8 | |
| ISBma3 | IS110 | Burkholderia mallei | 28 | 4.8 | |
| ISAcr2 | IS6 | Acidiphilium cryptum | 28 | 4.8 | |
| ISH22 | IS200/IS605 | Halobacterium sp. | 28 | 4.8 | |
| ISPlu1 | IS30 | Photorhabdus luminescens | 28 | 4.8 | |
| ISPsy11 | IS3 | IS3 | Pseudomonas syringae | 28 | 4.8 |
| ISRso9 | IS5 | IS5 | Ralstonia solanacearum | 28 | 4.8 |
| ISRm13 | IS5 | IS5 | Sinorhizobium meliloti | 28 | 4.8 |
| ISPpu7 | IS21 | - | Pseudomonas putida | 28 | 4.8 |
| IS1491 | IS21 | - | Pseudomonas alcaligenes | 28 | 4.8 |
>ISVbsp2
Length = 1489
Score = 34.2 bits (17), Expect = 0.078
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 45 gcgccagcgcgtcatgg 61
|||||||||||||||||
Sbjct: 448 gcgccagcgcgtcatgg 432
>ISAzs20
Length = 2811
Score = 32.2 bits (16), Expect = 0.31
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 60 ggccgtagtgctgcaggccg 79
||||| ||||||||||||||
Sbjct: 1865 ggccggagtgctgcaggccg 1884
>ISAcp1
Length = 1483
Score = 32.2 bits (16), Expect = 0.31
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 45 gcgccagcgcgtcatg 60
||||||||||||||||
Sbjct: 454 gcgccagcgcgtcatg 439
>ISApr5
Length = 806
Score = 32.2 bits (16), Expect = 0.31
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 35 tcaatgtccagcgcca 50
||||||||||||||||
Sbjct: 657 tcaatgtccagcgcca 672
>ISMme1
Length = 1324
Score = 30.2 bits (15), Expect = 1.2
Identities = 21/23 (91%)
Strand = Plus / Minus
Query: 84 tggcgatccactgcagcggcgcc 106
||||| ||||| |||||||||||
Sbjct: 431 tggcggtccacagcagcggcgcc 409
>ISNph13
Length = 1429
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 43 cagcgccagcgcgtc 57
|||||||||||||||
Sbjct: 888 cagcgccagcgcgtc 902
>ISDds8
Length = 986
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 51 gcgcgtcatggccgt 65
|||||||||||||||
Sbjct: 509 gcgcgtcatggccgt 495
>ISRosp1
Length = 1231
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 4 caggtggctgacgat 18
|||||||||||||||
Sbjct: 139 caggtggctgacgat 153
>ISRso12
Length = 1225
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 39 tgtccagcgccagcg 53
|||||||||||||||
Sbjct: 926 tgtccagcgccagcg 912
>ISSna1
Length = 1560
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 96 gcagcggcgcccag 109
||||||||||||||
Sbjct: 446 gcagcggcgcccag 459
>ISPa36
Length = 2468
Score = 28.2 bits (14), Expect = 4.8
Identities = 20/22 (90%)
Strand = Plus / Plus
Query: 58 atggccgtagtgctgcaggccg 79
||||||| | ||||||||||||
Sbjct: 1720 atggccgaactgctgcaggccg 1741
>ISPa35
Length = 1031
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 50 agcgcgtcatggcc 63
||||||||||||||
Sbjct: 865 agcgcgtcatggcc 878
>ISStau8
Length = 1749
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 45 gcgccagcgcgtca 58
||||||||||||||
Sbjct: 1547 gcgccagcgcgtca 1560
>ISButh4
Length = 1483
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 45 gcgccagcgcgtca 58
||||||||||||||
Sbjct: 458 gcgccagcgcgtca 445
>ISRsp18
Length = 1560
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 46 cgccagcgcgtcat 59
||||||||||||||
Sbjct: 523 cgccagcgcgtcat 510
>ISNha6
Length = 1547
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 46 cgccagcgcgtcat 59
||||||||||||||
Sbjct: 510 cgccagcgcgtcat 497
>ISRhru3
Length = 1382
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 72 gcaggccgcgaatg 85
||||||||||||||
Sbjct: 559 gcaggccgcgaatg 546
>ISMaq3
Length = 1560
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 106 ccagccgttgggtt 119
||||||||||||||
Sbjct: 238 ccagccgttgggtt 225
>ISCARN61
Length = 1368
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 181 ggcgcgtaccgcgt 194
||||||||||||||
Sbjct: 785 ggcgcgtaccgcgt 772
>ISCARN47
Length = 1368
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 181 ggcgcgtaccgcgt 194
||||||||||||||
Sbjct: 785 ggcgcgtaccgcgt 772
>ISCARN23
Length = 1907
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 71 tgcaggccgcgaat 84
||||||||||||||
Sbjct: 308 tgcaggccgcgaat 295
>ISGdi6
Length = 1051
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 99 gcggcgcccagccg 112
||||||||||||||
Sbjct: 592 gcggcgcccagccg 579
>ISUnCu3
Length = 2596
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 188 accgcgtcggcgag 201
||||||||||||||
Sbjct: 589 accgcgtcggcgag 602
>ISBma3
Length = 1458
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 72 gcaggccgcgaatg 85
||||||||||||||
Sbjct: 718 gcaggccgcgaatg 705
>ISAcr2
Length = 892
Score = 28.2 bits (14), Expect = 4.8
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 183 cgcgtaccgcgtcggcga 200
||||| ||||||||||||
Sbjct: 396 cgcgttccgcgtcggcga 379
>ISH22
Length = 1700
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 171 tgagcaggcgggcg 184
||||||||||||||
Sbjct: 1345 tgagcaggcgggcg 1332
>ISPlu1
Length = 1077
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 1 gaacaggtggctga 14
||||||||||||||
Sbjct: 356 gaacaggtggctga 369
>ISPsy11
Length = 1313
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 209 gcctgttcatgggt 222
||||||||||||||
Sbjct: 471 gcctgttcatgggt 484
>ISRso9
Length = 1483
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 45 gcgccagcgcgtca 58
||||||||||||||
Sbjct: 458 gcgccagcgcgtca 445
>ISRm13
Length = 1550
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 46 cgccagcgcgtcat 59
||||||||||||||
Sbjct: 523 cgccagcgcgtcat 510
>ISPpu7
Length = 2598
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 188 accgcgtcggcgag 201
||||||||||||||
Sbjct: 590 accgcgtcggcgag 603
>IS1491
Length = 2481
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 188 accgcgtcggcgag 201
||||||||||||||
Sbjct: 520 accgcgtcggcgag 533
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_309_length_244_cov_0.874251_ID_5788
(244 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISPa45 | IS4 | IS4 | Pseudomonas aeruginosa | 32 | 0.31 |
| ISPko4 | IS3 | IS150 | Paracoccus kondratievae | 30 | 1.2 |
| ISRjo3 | ISNCY | ISDol1 | Rhodococcus jostii | 30 | 1.2 |
| ISCARN81 | IS3 | IS3 | Metagenomic data from CARNOULES | 30 | 1.2 |
| ISBvi1 | IS4 | IS4 | Burkholderia vietnamiensis | 30 | 1.2 |
| IS66 | IS66 | Agrobacterium tumefaciens | 30 | 1.2 | |
| ISMyma11 | ISNCY | ISDol1 | Mycobacterium marinum | 28 | 4.8 |
| ISXci1 | IS21 | Xanthomonas citri | 28 | 4.8 | |
| ISHas1 | IS200/IS605 | IS605 | Halonotius sp. | 28 | 4.8 |
| ISPa40 | Tn3 | Pseudomonas aeruginosa | 28 | 4.8 | |
| ISAzs18 | IS66 | Azospirillum sp. | 28 | 4.8 | |
| ISAzs8 | ISL3 | Azospirillum sp. | 28 | 4.8 | |
| ISMav7 | IS1380 | Mycobacterium avium | 28 | 4.8 | |
| ISMex23 | IS200/IS605 | IS1341 | Methylobacterium extorquens | 28 | 4.8 |
| ISCARN59 | IS256 | Metagenomic data from CARNOULES | 28 | 4.8 | |
| ISAzo15 | IS66 | Azoarcus sp. | 28 | 4.8 | |
| ISCARN35 | IS4 | IS4 | Metagenomic data from CARNOULES | 28 | 4.8 |
| ISGdi14 | IS3 | IS51 | Gluconacetobacter diazotrophicus | 28 | 4.8 |
| ISBxe3 | IS481 | Burkholderia xenovorans | 28 | 4.8 | |
| ISBcen26 | IS481 | Burkholderia cenocepacia | 28 | 4.8 | |
| ISBvi4 | IS3 | IS3 | Burkholderia vietnamiensis | 28 | 4.8 |
| ISCsp1 | IS256 | Comamonas sp | 28 | 4.8 | |
| ISSp1 | IS1380 | - | Sphingomonas paucimobilis | 28 | 4.8 |
| ISRso13 | IS4 | IS4 | Ralstonia solanacearum | 28 | 4.8 |
| ISRme1 | IS5 | - | Ralstonia metallidurans | 28 | 4.8 |
| ISRm12 | IS5 | IS5 | Sinorhizobium meliloti | 28 | 4.8 |
| ISPsp2 | ISL3 | - | Pseudomonas sp. | 28 | 4.8 |
| ISPpu1 | IS630 | - | Pseudomonas putida | 28 | 4.8 |
| IS1412 | IS1380 | - | Sphingomonas sp | 28 | 4.8 |
| IS1411 | ISL3 | - | Pseudomonas sp | 28 | 4.8 |
>ISPa45
Length = 1637
Score = 32.2 bits (16), Expect = 0.31
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 203 cgacaggccttcctggccga 222
||||||||||||| ||||||
Sbjct: 960 cgacaggccttcccggccga 979
>ISPko4
Length = 1524
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 156 cgcgcgaactggccg 170
|||||||||||||||
Sbjct: 722 cgcgcgaactggccg 736
>ISRjo3
Length = 1638
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 177 tcgagtcggtgctgc 191
|||||||||||||||
Sbjct: 135 tcgagtcggtgctgc 149
>ISCARN81
Length = 1406
Score = 30.2 bits (15), Expect = 1.2
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 120 atgcggggctgctggcgca 138
|||||| ||||||||||||
Sbjct: 505 atgcggcgctgctggcgca 523
>ISBvi1
Length = 1455
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 147 tcccgcaggcgcgcg 161
|||||||||||||||
Sbjct: 571 tcccgcaggcgcgcg 585
>IS66
Length = 2556
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 161 gaactggccgcggag 175
|||||||||||||||
Sbjct: 1167 gaactggccgcggag 1181
>ISMyma11
Length = 1584
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 159 gcgaactggccgcg 172
||||||||||||||
Sbjct: 765 gcgaactggccgcg 778
>ISXci1
Length = 2013
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 207 aggccttcctggcc 220
||||||||||||||
Sbjct: 376 aggccttcctggcc 389
>ISHas1
Length = 1955
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 15 acgacaccgttcaa 28
||||||||||||||
Sbjct: 1863 acgacaccgttcaa 1876
>ISPa40
Length = 6592
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 67 ctggctggcgagtc 80
||||||||||||||
Sbjct: 2130 ctggctggcgagtc 2117
>ISAzs18
Length = 2633
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 125 gggctgctggcgca 138
||||||||||||||
Sbjct: 1564 gggctgctggcgca 1577
>ISAzs8
Length = 1373
Score = 28.2 bits (14), Expect = 4.8
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 33 tcctcgacgcgccggatg 50
|||||| |||||||||||
Sbjct: 1157 tcctcgtcgcgccggatg 1140
>ISMav7
Length = 1691
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 157 gcgcgaactggccg 170
||||||||||||||
Sbjct: 205 gcgcgaactggccg 218
>ISMex23
Length = 1390
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 40 cgcgccggatgtgg 53
||||||||||||||
Sbjct: 854 cgcgccggatgtgg 841
>ISCARN59
Length = 1360
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 149 ccgcaggcgcgcga 162
||||||||||||||
Sbjct: 322 ccgcaggcgcgcga 335
>ISAzo15
Length = 2441
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 123 cggggctgctggcg 136
||||||||||||||
Sbjct: 1423 cggggctgctggcg 1436
>ISCARN35
Length = 1455
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 147 tcccgcaggcgcgc 160
||||||||||||||
Sbjct: 571 tcccgcaggcgcgc 584
>ISGdi14
Length = 1318
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 209 gccttcctggccga 222
||||||||||||||
Sbjct: 1120 gccttcctggccga 1133
>ISBxe3
Length = 1279
Score = 28.2 bits (14), Expect = 4.8
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 188 ctgcaggggccgtcgcga 205
|||| |||||||||||||
Sbjct: 272 ctgctggggccgtcgcga 255
>ISBcen26
Length = 1041
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 127 gctgctggcgcaat 140
||||||||||||||
Sbjct: 351 gctgctggcgcaat 338
>ISBvi4
Length = 1268
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 157 gcgcgaactggccg 170
||||||||||||||
Sbjct: 285 gcgcgaactggccg 298
>ISCsp1
Length = 1393
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 209 gccttcctggccga 222
||||||||||||||
Sbjct: 450 gccttcctggccga 463
>ISSp1
Length = 1646
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 156 cgcgcgaactggcc 169
||||||||||||||
Sbjct: 505 cgcgcgaactggcc 518
>ISRso13
Length = 1467
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 179 gagtcggtgctgca 192
||||||||||||||
Sbjct: 437 gagtcggtgctgca 424
>ISRme1
Length = 1331
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 106 gttcgccatggtgc 119
||||||||||||||
Sbjct: 189 gttcgccatggtgc 176
>ISRm12
Length = 1481
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 126 ggctgctggcgcaa 139
||||||||||||||
Sbjct: 865 ggctgctggcgcaa 878
>ISPsp2
Length = 1416
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 121 tgcggggctgctgg 134
||||||||||||||
Sbjct: 253 tgcggggctgctgg 266
>ISPpu1
Length = 1164
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 88 aatgcatgtggaag 101
||||||||||||||
Sbjct: 909 aatgcatgtggaag 896
>IS1412
Length = 1656
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 156 cgcgcgaactggcc 169
||||||||||||||
Sbjct: 508 cgcgcgaactggcc 521
>IS1411
Length = 1419
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 121 tgcggggctgctgg 134
||||||||||||||
Sbjct: 253 tgcggggctgctgg 266
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_310_length_244_cov_0.874251_ID_5790
(244 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISHth1 | ISH6 | Halococcus thailandensis | 34 | 0.077 | |
| ISAnsp10 | IS630 | Anaeromyxobacter sp. | 34 | 0.077 | |
| ISHma5 | ISH6 | Haloarcula marismortui | 34 | 0.077 | |
| ISDge7 | IS5 | IS1031 | Deinococcus geothermalis | 32 | 0.31 |
| ISHvo11 | IS4 | ISH8 | Haloferax volcanii | 30 | 1.2 |
| ISMra5 | IS5 | IS427 | Methylobacterium radiotolerans | 30 | 1.2 |
| ISCARN65 | IS21 | Metagenomic data from CARNOULES | 30 | 1.2 | |
| ISSfr2 | IS110 | IS1111 | Ensifer fredii | 30 | 1.2 |
| ISCje1 | IS481 | Corynebacterium jeikeium | 30 | 1.2 | |
| IS1382 | IS30 | - | Pseudomonas putida | 30 | 1.2 |
| ISAeca4 | IS3 | IS51 | Aeromonas caviae | 28 | 4.8 |
| ISH31 | ISH6 | Halobacterium sp. | 28 | 4.8 | |
| ISApr14 | IS256 | alpha proteobacterium | 28 | 4.8 | |
| ISAzs29 | Tn3 | Azospirillum sp. | 28 | 4.8 | |
| ISStro2 | IS5 | ISL2 | Streptosporangium roseum | 28 | 4.8 |
| ISBvi6 | IS5 | IS903 | Burkholderia vietnamiensis | 28 | 4.8 |
| ISStu1 | IS5 | ISL2 | Streptomyces turgidiscabies | 28 | 4.8 |
| ISPth1 | IS5 | IS903 | Paracoccus thiocyanatus | 28 | 4.8 |
| ISSfu1 | IS1380 | Syntrophobacter fumaroxidans | 28 | 4.8 | |
| ISStma14 | IS3 | IS3 | Stenotrophomonas maltophilia | 28 | 4.8 |
| ISAzo15 | IS66 | Azoarcus sp. | 28 | 4.8 | |
| ISGdi14 | IS3 | IS51 | Gluconacetobacter diazotrophicus | 28 | 4.8 |
| ISSba11 | IS21 | Shewanella baltica | 28 | 4.8 | |
| ISRle6 | IS6 | Rhizobium leguminosarum | 28 | 4.8 | |
| ISXca1 | IS3 | IS407 | Xanthomonas campestris | 28 | 4.8 |
| ISNmu1 | IS3 | IS3 | Nitrosospira multiformis | 28 | 4.8 |
| ISDsh1 | IS3 | IS51 | Dinoroseobacter shibae | 28 | 4.8 |
| ISHne1 | IS3 | IS51 | Hyphomonas neptunium | 28 | 4.8 |
| ISMca4 | IS3 | IS407 | Methylococcus capsulatus | 28 | 4.8 |
| ISMyma5 | IS481 | - | Mycobacterium marinum | 28 | 4.8 |
| ISXac3 | IS3 | IS51 | Xanthomonas axonopodis | 28 | 4.8 |
| ISHla10 | ISH6 | Halorubrum lacusprofundi | 28 | 4.8 | |
| ISH3B | ISH3 | Halobacterium salinarum | 28 | 4.8 | |
| ISH27-1 | ISH3 | - | Halobacterium salinarum | 28 | 4.8 |
| ISPsy31 | IS3 | IS3 | Pseudomonas syringae | 28 | 4.8 |
| IS1474 | IS21 | - | Pseudomonas alcaligenes | 28 | 4.8 |
| IS1240 | IS3 | IS3 | Pseudomonas syringae | 28 | 4.8 |
>ISHth1
Length = 1445
Score = 34.2 bits (17), Expect = 0.077
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 135 cgcgcgatccgctcgcg 151
|||||||||||||||||
Sbjct: 1062 cgcgcgatccgctcgcg 1046
>ISAnsp10
Length = 1185
Score = 34.2 bits (17), Expect = 0.077
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 1 cttcatcaatcagcgcctcga 21
||||||| |||||||||||||
Sbjct: 266 cttcatcgatcagcgcctcga 286
>ISHma5
Length = 1449
Score = 34.2 bits (17), Expect = 0.077
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 135 cgcgcgatccgctcgcg 151
|||||||||||||||||
Sbjct: 1066 cgcgcgatccgctcgcg 1050
>ISDge7
Length = 876
Score = 32.2 bits (16), Expect = 0.31
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 98 cgcgaccaggtgaccg 113
||||||||||||||||
Sbjct: 497 cgcgaccaggtgaccg 482
>ISHvo11
Length = 1445
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 9 atcagcgcctcgatg 23
|||||||||||||||
Sbjct: 1119 atcagcgcctcgatg 1105
>ISMra5
Length = 832
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 142 tccgctcgcgttcct 156
|||||||||||||||
Sbjct: 474 tccgctcgcgttcct 488
>ISCARN65
Length = 2433
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 132 tcacgcgcgatccgc 146
|||||||||||||||
Sbjct: 521 tcacgcgcgatccgc 535
>ISSfr2
Length = 1534
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 150 cgttcctcctctttg 164
|||||||||||||||
Sbjct: 1245 cgttcctcctctttg 1231
>ISCje1
Length = 1417
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 160 ctttggcgtgttgca 174
|||||||||||||||
Sbjct: 116 ctttggcgtgttgca 102
>IS1382
Length = 1093
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 27 gttacctgcgccagg 41
|||||||||||||||
Sbjct: 638 gttacctgcgccagg 624
>ISAeca4
Length = 1235
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 140 gatccgctcgcgtt 153
||||||||||||||
Sbjct: 1061 gatccgctcgcgtt 1048
>ISH31
Length = 1445
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 138 gcgatccgctcgcg 151
||||||||||||||
Sbjct: 1040 gcgatccgctcgcg 1053
>ISApr14
Length = 1316
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 10 tcagcgcctcgatg 23
||||||||||||||
Sbjct: 1087 tcagcgcctcgatg 1074
>ISAzs29
Length = 3897
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 108 tgaccgcccagcac 121
||||||||||||||
Sbjct: 1648 tgaccgcccagcac 1661
>ISStro2
Length = 912
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 176 gtggttggacagtg 189
||||||||||||||
Sbjct: 160 gtggttggacagtg 147
>ISBvi6
Length = 1047
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 33 tgcgccaggcgttg 46
||||||||||||||
Sbjct: 260 tgcgccaggcgttg 273
>ISStu1
Length = 889
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 118 gcacgtcatggacg 131
||||||||||||||
Sbjct: 572 gcacgtcatggacg 559
>ISPth1
Length = 1054
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 137 cgcgatccgctcgc 150
||||||||||||||
Sbjct: 898 cgcgatccgctcgc 885
>ISSfu1
Length = 1666
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 79 gcgatgccgagaac 92
||||||||||||||
Sbjct: 1113 gcgatgccgagaac 1126
>ISStma14
Length = 1231
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 140 gatccgctcgcgtt 153
||||||||||||||
Sbjct: 1074 gatccgctcgcgtt 1061
>ISAzo15
Length = 2441
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 214 tgagctcggcttcc 227
||||||||||||||
Sbjct: 948 tgagctcggcttcc 935
>ISGdi14
Length = 1318
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 89 gaacttgagcgcga 102
||||||||||||||
Sbjct: 273 gaacttgagcgcga 286
>ISSba11
Length = 2394
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 171 tgcaagtggttgga 184
||||||||||||||
Sbjct: 579 tgcaagtggttgga 592
>ISRle6
Length = 891
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 102 accaggtgaccgcc 115
||||||||||||||
Sbjct: 186 accaggtgaccgcc 173
>ISXca1
Length = 1225
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 10 tcagcgcctcgatg 23
||||||||||||||
Sbjct: 304 tcagcgcctcgatg 291
>ISNmu1
Length = 1221
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 132 tcacgcgcgatccg 145
||||||||||||||
Sbjct: 157 tcacgcgcgatccg 144
>ISDsh1
Length = 1326
Score = 28.2 bits (14), Expect = 4.8
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 140 gatccgctcgcgttcctc 157
|||||| |||||||||||
Sbjct: 277 gatccggtcgcgttcctc 260
>ISHne1
Length = 1324
Score = 28.2 bits (14), Expect = 4.8
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 140 gatccgctcgcgttcctc 157
|||||| |||||||||||
Sbjct: 275 gatccgttcgcgttcctc 258
>ISMca4
Length = 1197
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 10 tcagcgcctcgatg 23
||||||||||||||
Sbjct: 113 tcagcgcctcgatg 100
>ISMyma5
Length = 1838
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 115 ccagcacgtcatgg 128
||||||||||||||
Sbjct: 1331 ccagcacgtcatgg 1318
>ISXac3
Length = 1234
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 140 gatccgctcgcgtt 153
||||||||||||||
Sbjct: 1058 gatccgctcgcgtt 1045
>ISHla10
Length = 1444
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 138 gcgatccgctcgcg 151
||||||||||||||
Sbjct: 1039 gcgatccgctcgcg 1052
>ISH3B
Length = 1398
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 226 ccgtctgcttgctg 239
||||||||||||||
Sbjct: 73 ccgtctgcttgctg 60
>ISH27-1
Length = 1398
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 226 ccgtctgcttgctg 239
||||||||||||||
Sbjct: 73 ccgtctgcttgctg 60
>ISPsy31
Length = 1667
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 89 gaacttgagcgcga 102
||||||||||||||
Sbjct: 464 gaacttgagcgcga 477
>IS1474
Length = 2633
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 72 gccatgagcgatgc 85
||||||||||||||
Sbjct: 2234 gccatgagcgatgc 2221
>IS1240
Length = 1668
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 89 gaacttgagcgcga 102
||||||||||||||
Sbjct: 463 gaacttgagcgcga 476
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_311_length_244_cov_0.868263_ID_5792
(244 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISMt2 | IS21 | - | Mycobacterium tuberculosis | 32 | 0.31 |
| ISButh4 | IS5 | IS5 | Burkholderia thailandensis | 30 | 1.2 |
| ISMch4 | IS110 | IS1111 | Methylobacterium chloromethanicum | 30 | 1.2 |
| ISBad1 | IS21 | Bifidobacterium adolescentis | 30 | 1.2 | |
| ISHar6 | IS110 | IS1111 | Herminiimonas arsenicoxydans | 30 | 1.2 |
| ISRso17 | IS701 | - | Ralstonia solanacearum | 30 | 1.2 |
| IS1096 | ISL3 | - | Mycobacterium smegmatis | 30 | 1.2 |
| ISTha3 | IS91 | Thauera sp. | 28 | 4.8 | |
| ISPa61 | ISL3 | Pseudomonas aeruginosa | 28 | 4.8 | |
| ISHamu1 | IS200/IS605 | IS1341 | Haloferax mucosum | 28 | 4.8 |
| ISNin1 | IS200/IS605 | IS605 | Natronolimnobius innermongolicus | 28 | 4.8 |
| ISH34 | IS200/IS605 | Halobacterium salinarum | 28 | 4.8 | |
| ISSin1 | IS256 | IS1249 | Scardovia inopinata | 28 | 4.8 |
| ISSuac1 | IS256 | Sulfobacillus acidophilus | 28 | 4.8 | |
| ISAar18 | IS110 | Arthrobacter arilaitensis | 28 | 4.8 | |
| ISAzo1 | IS1182 | Azoarcus sp. | 28 | 4.8 | |
| ISMex26 | ISL3 | Methylobacterium extorquens | 28 | 4.8 | |
| ISMdi2 | ISL3 | Methylobacterium dichloromethanicum | 28 | 4.8 | |
| ISThsp14 | ISL3 | Thiomonas sp. | 28 | 4.8 | |
| ISAli2 | IS630 | Azospirillum lipoferum | 28 | 4.8 | |
| ISPst3 | IS21 | Pseudomonas stutzeri | 28 | 4.8 | |
| ISGvi4 | IS4 | IS4Sa | Gloeobacter violaceus | 28 | 4.8 |
| ISPna2 | IS1595 | ISPna2 | Polaromonas naphthalenivorans | 28 | 4.8 |
| ISLxx2 | IS110 | Leifsonia xyli | 28 | 4.8 | |
| ISZmo1 | IS5 | IS1031 | Zymomonas mobilis | 28 | 4.8 |
| ISEnfa110 | IS110 | - | Enterococcus faecalis | 28 | 4.8 |
| IS654 | IS256 | - | Bacillus halodurans | 28 | 4.8 |
| IS6120 | IS256 | - | Mycobacterium smegmatis | 28 | 4.8 |
| IS469 | ISL3 | - | Streptomyces coelicolor | 28 | 4.8 |
| ISSme3 | IS66 | Sinorhizobium medicae | 28 | 4.8 |
>ISMt2
Length = 2645
Score = 32.2 bits (16), Expect = 0.31
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 187 ccgagctggccagcca 202
||||||||||||||||
Sbjct: 883 ccgagctggccagcca 898
>ISButh4
Length = 1483
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 103 tcgacttccggcgca 117
|||||||||||||||
Sbjct: 940 tcgacttccggcgca 926
>ISMch4
Length = 1631
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 34 ccttgctgccgctgt 48
|||||||||||||||
Sbjct: 1600 ccttgctgccgctgt 1586
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 218 ccgcgccgcctgcc 231
||||||||||||||
Sbjct: 914 ccgcgccgcctgcc 901
>ISBad1
Length = 2525
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 42 ccgctgtcgctgctc 56
|||||||||||||||
Sbjct: 1311 ccgctgtcgctgctc 1325
>ISHar6
Length = 1359
Score = 30.2 bits (15), Expect = 1.2
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 65 gctggtgcatgactgggtc 83
||||||||||||| |||||
Sbjct: 456 gctggtgcatgaccgggtc 474
>ISRso17
Length = 1471
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 37 tgctgccgctgtcgc 51
|||||||||||||||
Sbjct: 165 tgctgccgctgtcgc 179
>IS1096
Length = 2259
Score = 30.2 bits (15), Expect = 1.2
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 18 caacgtaccgtggccgcct 36
||||| |||||||||||||
Sbjct: 1108 caacgcaccgtggccgcct 1126
>ISTha3
Length = 2424
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 149 cggctttcgcaccg 162
||||||||||||||
Sbjct: 230 cggctttcgcaccg 217
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 69 gtgcatgactgggt 82
||||||||||||||
Sbjct: 763 gtgcatgactgggt 750
>ISPa61
Length = 1219
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 57 agccagcggctggt 70
||||||||||||||
Sbjct: 748 agccagcggctggt 735
>ISHamu1
Length = 1475
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 5 cgccaacgacaagc 18
||||||||||||||
Sbjct: 996 cgccaacgacaagc 983
>ISNin1
Length = 1902
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 209 cgccctcgaccgcg 222
||||||||||||||
Sbjct: 1186 cgccctcgaccgcg 1199
>ISH34
Length = 1853
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 209 cgccctcgaccgcg 222
||||||||||||||
Sbjct: 1137 cgccctcgaccgcg 1150
>ISSin1
Length = 1339
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 196 ccagccagcaacac 209
||||||||||||||
Sbjct: 1309 ccagccagcaacac 1322
>ISSuac1
Length = 1414
Score = 28.2 bits (14), Expect = 4.8
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 204 caacacgccctcgaccgc 221
||||| ||||||||||||
Sbjct: 575 caacaggccctcgaccgc 592
>ISAar18
Length = 1386
Score = 28.2 bits (14), Expect = 4.8
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 170 gctgatcgagtcccgccc 187
||||||||||||| ||||
Sbjct: 966 gctgatcgagtccagccc 983
>ISAzo1
Length = 1545
Score = 28.2 bits (14), Expect = 4.8
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 38 gctgccgctgtcgctgct 55
||||| ||||||||||||
Sbjct: 232 gctgctgctgtcgctgct 249
>ISMex26
Length = 1676
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 164 gcggacgctgatcg 177
||||||||||||||
Sbjct: 301 gcggacgctgatcg 288
>ISMdi2
Length = 1689
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 213 ctcgaccgcgccgc 226
||||||||||||||
Sbjct: 809 ctcgaccgcgccgc 796
>ISThsp14
Length = 1302
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 56 cagccagcggctgg 69
||||||||||||||
Sbjct: 906 cagccagcggctgg 893
>ISAli2
Length = 1171
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 34 ccttgctgccgctg 47
||||||||||||||
Sbjct: 949 ccttgctgccgctg 962
>ISPst3
Length = 2606
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 188 cgagctggccagcc 201
||||||||||||||
Sbjct: 1862 cgagctggccagcc 1875
>ISGvi4
Length = 1160
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 194 ggccagccagcaac 207
||||||||||||||
Sbjct: 196 ggccagccagcaac 183
>ISPna2
Length = 1049
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 33 gccttgctgccgct 46
||||||||||||||
Sbjct: 602 gccttgctgccgct 589
>ISLxx2
Length = 1427
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 212 cctcgaccgcgccg 225
||||||||||||||
Sbjct: 706 cctcgaccgcgccg 693
>ISZmo1
Length = 1068
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 193 tggccagccagcaa 206
||||||||||||||
Sbjct: 645 tggccagccagcaa 632
>ISEnfa110
Length = 1611
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 65 gctggtgcatgact 78
||||||||||||||
Sbjct: 524 gctggtgcatgact 537
>IS654
Length = 1384
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 4 acgccaacgacaag 17
||||||||||||||
Sbjct: 629 acgccaacgacaag 616
>IS6120
Length = 1486
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 4 acgccaacgacaag 17
||||||||||||||
Sbjct: 164 acgccaacgacaag 177
>IS469
Length = 1647
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 213 ctcgaccgcgccgc 226
||||||||||||||
Sbjct: 1452 ctcgaccgcgccgc 1465
>ISSme3
Length = 3149
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 103 tcgacttccggcgc 116
||||||||||||||
Sbjct: 601 tcgacttccggcgc 614
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_312_length_244_cov_0.862275_ID_5794
(244 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISArsp6 | Tn3 | Arthrobacter sp. | 32 | 0.31 | |
| ISMsm4 | ISL3 | Mycobacterium smegmatis | 32 | 0.31 | |
| ISRel5 | IS21 | Rhizobium etli | 30 | 1.2 | |
| ISVsp3 | IS66 | Verrucomicrobium spinosum | 30 | 1.2 | |
| ISPpa8 | IS5 | IS903 | Paracoccus pantotrophus | 30 | 1.2 |
| ISMav6 | IS110 | Mycobacterium avium | 30 | 1.2 | |
| ISThsp3 | IS66 | Thiomonas sp. | 30 | 1.2 | |
| ISMesp1 | IS1595 | ISNwi1 | Mesorhizobium sp. | 30 | 1.2 |
| ISMca5 | IS256 | Methylococcus capsulatus | 30 | 1.2 | |
| ISPst5 | IS5 | IS5 | Pseudomonas stutzeri | 30 | 1.2 |
| ISAeme1 | ISAs1 | Aeromonas media | 28 | 4.8 | |
| ISHtu2 | IS6 | Haloterrigena turkmenica | 28 | 4.8 | |
| ISRle12 | IS256 | Rhizobium leguminosarum | 28 | 4.8 | |
| ISPa43 | Tn3 | Pseudomonas aeruginosa | 28 | 4.8 | |
| ISCli1 | IS1380 | Corynebacterium lipophiloflavum | 28 | 4.8 | |
| ISAnsp9 | ISAs1 | Anaeromyxobacter sp. | 28 | 4.8 | |
| ISR1 | IS3 | IS407 | Rhizobium lupini | 28 | 4.8 |
| ISPpu4 | IS3 | IS3 | Pseudomonas putida | 28 | 4.8 |
| ISH27-3 | ISH3 | Halobacterium salinarum | 28 | 4.8 | |
| IS4811 | IS5 | IS1031 | Streptomyces lividans | 28 | 4.8 |
>ISArsp6
Length = 26712
Score = 32.2 bits (16), Expect = 0.31
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 106 gcgcagcaccccggcctcgg 125
||||||||||| ||||||||
Sbjct: 5286 gcgcagcaccctggcctcgg 5305
>ISMsm4
Length = 1458
Score = 32.2 bits (16), Expect = 0.31
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 175 ccggcgccagctcgcc 190
||||||||||||||||
Sbjct: 586 ccggcgccagctcgcc 571
>ISRel5
Length = 2587
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 52 gttctggatgtcggc 66
|||||||||||||||
Sbjct: 446 gttctggatgtcggc 432
>ISVsp3
Length = 2446
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 106 gcgcagcaccccggc 120
|||||||||||||||
Sbjct: 136 gcgcagcaccccggc 150
>ISPpa8
Length = 1050
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 9 catcgaagcgcttcg 23
|||||||||||||||
Sbjct: 785 catcgaagcgcttcg 799
>ISMav6
Length = 1472
Score = 30.2 bits (15), Expect = 1.2
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 36 agacccgatcgcccaggtt 54
||||| |||||||||||||
Sbjct: 352 agacctgatcgcccaggtt 370
>ISThsp3
Length = 2455
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 174 cccggcgccagctcg 188
|||||||||||||||
Sbjct: 1651 cccggcgccagctcg 1637
>ISMesp1
Length = 2601
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 17 cgcttcgcgtagttg 31
|||||||||||||||
Sbjct: 2006 cgcttcgcgtagttg 1992
>ISMca5
Length = 1390
Score = 30.2 bits (15), Expect = 1.2
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 174 cccggcgccagctcgccac 192
||||||||||| |||||||
Sbjct: 1047 cccggcgccaggtcgccac 1029
>ISPst5
Length = 1191
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 39 cccgatcgcccaggt 53
|||||||||||||||
Sbjct: 456 cccgatcgcccaggt 442
>ISAeme1
Length = 1256
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 51 ggttctggatgtcg 64
||||||||||||||
Sbjct: 1016 ggttctggatgtcg 1029
>ISHtu2
Length = 743
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 1 gccgtagccatcga 14
||||||||||||||
Sbjct: 501 gccgtagccatcga 488
>ISRle12
Length = 1297
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 7 gccatcgaagcgct 20
||||||||||||||
Sbjct: 1064 gccatcgaagcgct 1077
>ISPa43
Length = 19903
Score = 28.2 bits (14), Expect = 4.8
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 188 gccacgttgtccagaaac 205
|||||| |||||||||||
Sbjct: 8958 gccacgctgtccagaaac 8941
>ISCli1
Length = 1687
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 52 gttctggatgtcgg 65
||||||||||||||
Sbjct: 903 gttctggatgtcgg 890
>ISAnsp9
Length = 1704
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 63 cggccggcgccgac 76
||||||||||||||
Sbjct: 1606 cggccggcgccgac 1593
>ISR1
Length = 1259
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 188 gccacgttgtccag 201
||||||||||||||
Sbjct: 299 gccacgttgtccag 286
>ISPpu4
Length = 1663
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 179 cgccagctcgccac 192
||||||||||||||
Sbjct: 1129 cgccagctcgccac 1116
>ISH27-3
Length = 1389
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 131 cgaccggacagcgt 144
||||||||||||||
Sbjct: 1262 cgaccggacagcgt 1249
>IS4811
Length = 5396
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 147 tcaggtcgagcgag 160
||||||||||||||
Sbjct: 1235 tcaggtcgagcgag 1248
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_313_length_244_cov_0.868263_ID_5796
(244 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISAnsp4 | IS21 | Anaeromyxobacter sp. | 36 | 0.020 | |
| ISPa60 | ISAs1 | Pseudomonas aeruginosa | 32 | 0.31 | |
| ISArsp4 | IS256 | Arthrobacter sp. | 32 | 0.31 | |
| TnXo19 | Tn3 | Xanthomonas oryzae | 30 | 1.2 | |
| ISMex28 | IS5 | IS5 | Methylobacterium extorquens | 30 | 1.2 |
| ISMdi1 | IS630 | Methylobacterium dichloromethanicum | 30 | 1.2 | |
| ISCARN34 | IS1380 | Metagenomic data from CARNOULES | 30 | 1.2 | |
| ISGvi2 | IS4 | IS50 | Gloeobacter violaceus | 30 | 1.2 |
| IS100L | IS21 | - | Yersinia pestis | 30 | 1.2 |
| IS100kyp | IS21 | - | Yersinia pseudotuberculosis | 30 | 1.2 |
| IS100 | IS21 | - | Yersinia pestis | 30 | 1.2 |
| ISHhu11 | IS200/IS605 | IS1341 | Halobacterium hubeiense | 28 | 4.8 |
| ISNpe11 | IS200/IS605 | IS1341 | Natrinema pellirubrum | 28 | 4.8 |
| ISVsp2 | IS1634 | Verrucomicrobium spinosum | 28 | 4.8 | |
| ISMpo9 | IS701 | Methylobacterium populi | 28 | 4.8 | |
| ISArsp6 | Tn3 | Arthrobacter sp. | 28 | 4.8 | |
| ISAar32 | IS1380 | Arthrobacter arilaitensis | 28 | 4.8 | |
| ISAar10 | IS1380 | Arthrobacter arilaitensis | 28 | 4.8 | |
| ISAar9 | IS1380 | Arthrobacter arilaitensis | 28 | 4.8 | |
| ISMex37 | IS3 | IS150 | Methylobacterium extorquens | 28 | 4.8 |
| ISThsp19 | IS21 | Thiomonas sp. | 28 | 4.8 | |
| ISAzo31 | IS5 | IS5 | Azoarcus sp. | 28 | 4.8 |
| ISSba7 | IS66 | Shewanella baltica | 28 | 4.8 | |
| ISSam1 | IS110 | Streptomyces ambofaciens | 28 | 4.8 | |
| ISHma7 | IS200/IS605 | Haloarcula marismortui | 28 | 4.8 | |
| ISAac2 | IS5 | IS427 | Actinobacillus actinomycetemcomitans | 28 | 4.8 |
| IS466 | ISL3 | - | Streptomyces coelicolor | 28 | 4.8 |
>ISAnsp4
Length = 2195
Score = 36.2 bits (18), Expect = 0.020
Identities = 24/26 (92%)
Strand = Plus / Plus
Query: 144 gtcgtcgaccatgcgcacttcgaggg 169
|||||||||| ||||||||||||||
Sbjct: 1224 gtcgtcgaccccgcgcacttcgaggg 1249
>ISPa60
Length = 1228
Score = 32.2 bits (16), Expect = 0.31
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 152 ccatgcgcacttcgag 167
||||||||||||||||
Sbjct: 750 ccatgcgcacttcgag 765
>ISArsp4
Length = 1400
Score = 32.2 bits (16), Expect = 0.31
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 179 ggccgaggatgtcctt 194
||||||||||||||||
Sbjct: 734 ggccgaggatgtcctt 719
>TnXo19
Length = 18767
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 136 ccggcggtgtcgtcg 150
|||||||||||||||
Sbjct: 10644 ccggcggtgtcgtcg 10658
>ISMex28
Length = 1310
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 130 aggcggccggcggtg 144
|||||||||||||||
Sbjct: 1181 aggcggccggcggtg 1167
>ISMdi1
Length = 1058
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 127 tcgaggcggccggcg 141
|||||||||||||||
Sbjct: 822 tcgaggcggccggcg 836
>ISCARN34
Length = 1714
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 209 cctgtacgccgggca 223
|||||||||||||||
Sbjct: 1129 cctgtacgccgggca 1143
>ISGvi2
Length = 1487
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 130 aggcggccggcggtg 144
|||||||||||||||
Sbjct: 322 aggcggccggcggtg 308
>IS100L
Length = 1950
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 215 cgccgggcagttgca 229
|||||||||||||||
Sbjct: 1141 cgccgggcagttgca 1155
>IS100kyp
Length = 1954
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 215 cgccgggcagttgca 229
|||||||||||||||
Sbjct: 1144 cgccgggcagttgca 1158
>IS100
Length = 1953
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 215 cgccgggcagttgca 229
|||||||||||||||
Sbjct: 1144 cgccgggcagttgca 1158
>ISHhu11
Length = 1622
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 161 cttcgagggtggcg 174
||||||||||||||
Sbjct: 398 cttcgagggtggcg 385
>ISNpe11
Length = 1613
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 120 ggcttcttcgaggc 133
||||||||||||||
Sbjct: 127 ggcttcttcgaggc 140
>ISVsp2
Length = 2089
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 221 gcagttgcaccacg 234
||||||||||||||
Sbjct: 421 gcagttgcaccacg 408
>ISMpo9
Length = 1413
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 138 ggcggtgtcgtcga 151
||||||||||||||
Sbjct: 366 ggcggtgtcgtcga 353
>ISArsp6
Length = 26712
Score = 28.2 bits (14), Expect = 4.8
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 207 gtcctgtacgccgggcag 224
|||||| |||||||||||
Sbjct: 9662 gtcctggacgccgggcag 9679
>ISAar32
Length = 1738
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 131 ggcggccggcggtg 144
||||||||||||||
Sbjct: 328 ggcggccggcggtg 341
>ISAar10
Length = 1602
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 131 ggcggccggcggtg 144
||||||||||||||
Sbjct: 328 ggcggccggcggtg 341
>ISAar9
Length = 1735
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 131 ggcggccggcggtg 144
||||||||||||||
Sbjct: 328 ggcggccggcggtg 341
>ISMex37
Length = 1510
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 20 tgaggcgctcgccg 33
||||||||||||||
Sbjct: 600 tgaggcgctcgccg 613
>ISThsp19
Length = 2657
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 141 ggtgtcgtcgacca 154
||||||||||||||
Sbjct: 1197 ggtgtcgtcgacca 1184
>ISAzo31
Length = 1324
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 5 cgggctgtgcgtcg 18
||||||||||||||
Sbjct: 745 cgggctgtgcgtcg 758
>ISSba7
Length = 2376
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 193 ttggctttggccac 206
||||||||||||||
Sbjct: 610 ttggctttggccac 597
>ISSam1
Length = 1489
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 141 ggtgtcgtcgacca 154
||||||||||||||
Sbjct: 926 ggtgtcgtcgacca 913
>ISHma7
Length = 2008
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 161 cttcgagggtggcg 174
||||||||||||||
Sbjct: 787 cttcgagggtggcg 774
>ISAac2
Length = 885
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 184 aggatgtccttggc 197
||||||||||||||
Sbjct: 222 aggatgtccttggc 235
>IS466
Length = 1628
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 5 cgggctgtgcgtcg 18
||||||||||||||
Sbjct: 378 cgggctgtgcgtcg 365
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_314_length_244_cov_0.814371_ID_5798
(244 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISPkr1 | IS21 | Paracoccus koreensis | 32 | 0.31 | |
| ISXoo13 | ISL3 | Xanthomonas oryzae | 32 | 0.31 | |
| ISRsp13 | IS5 | Rhizhobium sp. | 30 | 1.2 | |
| ISNti1 | IS200/IS605 | IS1341 | Natronorubrum tibetense | 30 | 1.2 |
| ISAzs11 | ISAs1 | Azospirillum sp. | 30 | 1.2 | |
| ISPso1 | IS256 | Paracoccus solventivorans | 30 | 1.2 | |
| ISMlo5 | ISNCY | ISDol1 | Mesorhizobium loti | 30 | 1.2 |
| ISMav8 | IS1380 | Mycobacterium avium | 30 | 1.2 | |
| ISAZo16 | IS21 | Azoarcus sp. | 30 | 1.2 | |
| ISRta2 | IS256 | Ralstonia taiwanensis | 30 | 1.2 | |
| ISMyca1 | IS1634 | Mycobacterium canettii | 30 | 1.2 | |
| ISMaq7 | IS256 | Marinobacter aquaeolei | 28 | 4.8 | |
| ISAeme11 | IS701 | ISAba11 | Aeromonas media | 28 | 4.8 |
| ISBast1 | IS256 | IS1249 | Bifidobacterium asteroides | 28 | 4.8 |
| ISGsi1 | IS256 | IS1249 | Gordonia sihwensis | 28 | 4.8 |
| ISNma6 | IS630 | Natrialba magadii | 28 | 4.8 | |
| ISPa43 | Tn3 | Pseudomonas aeruginosa | 28 | 4.8 | |
| ISStro1 | IS5 | IS427 | Streptosporangium roseum | 28 | 4.8 |
| ISPna4 | IS5 | IS903 | Polaromonas naphthalenivorans | 28 | 4.8 |
| ISShes11 | Tn3 | Shewanella sp. | 28 | 4.8 | |
| ISRhsp7 | IS5 | Rhodobacter sphaeroides | 28 | 4.8 | |
| ISMafe1 | IS5 | IS5 | Mariprofundus ferrooxydans | 28 | 4.8 |
| ISXoo14 | IS5 | Xanthomonas oryzae | 28 | 4.8 | |
| ISMex30 | IS630 | Methylobacterium extorquens | 28 | 4.8 | |
| ISCARN58 | IS21 | Metagenomic data from CARNOULES | 28 | 4.8 | |
| ISCARN57 | IS110 | Metagenomic data from CARNOULES | 28 | 4.8 | |
| ISAzo15 | IS66 | Azoarcus sp. | 28 | 4.8 | |
| ISThsp9 | Tn3 | Thiomonas sp. | 28 | 4.8 | |
| ISFpe1 | IS66 | Fulvimarina pelagi | 28 | 4.8 | |
| ISAau4 | Tn3 | Arthrobacter aurescens | 28 | 4.8 | |
| ISRta4 | IS110 | Ralstonia taiwanensis | 28 | 4.8 | |
| ISCro5 | IS110 | IS1111 | Citrobacter rodentium | 28 | 4.8 |
| ISKpn6 | IS1182 | Klebsiella pneumoniae | 28 | 4.8 | |
| ISGur9 | IS21 | Geobacter uraniumreducens | 28 | 4.8 | |
| ISVch6 | IS630 | Vibrio cholerae | 28 | 4.8 | |
| ISXac1 | IS4 | IS10 | Xanthomonas axonopodis | 28 | 4.8 |
| ISRtr4 | IS5 | IS1031 | Rhizobium tropici | 28 | 4.8 |
| ISH22 | IS200/IS605 | Halobacterium sp. | 28 | 4.8 | |
| ISXc4 | Tn3 | - | Xanthomonas campestris | 28 | 4.8 |
| ISXaca1 | IS4 | IS10 | Xanthomonas campestris | 28 | 4.8 |
| ISXa1 | ISAs1 | - | Xanthobacter autotrophicus | 28 | 4.8 |
| ISH7B | ISNCY | Halobacterium sp. | 28 | 4.8 | |
| IS292 | IS66 | - | Agrobacterium sp | 28 | 4.8 |
>ISPkr1
Length = 2469
Score = 32.2 bits (16), Expect = 0.31
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 176 ggatcatgctgaggat 191
||||||||||||||||
Sbjct: 1406 ggatcatgctgaggat 1391
>ISXoo13
Length = 1312
Score = 32.2 bits (16), Expect = 0.31
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 21 cagcgtgaagcccgac 36
||||||||||||||||
Sbjct: 371 cagcgtgaagcccgac 356
>ISRsp13
Length = 1353
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 17 tcgccagcgtgaagc 31
|||||||||||||||
Sbjct: 1206 tcgccagcgtgaagc 1192
>ISNti1
Length = 1474
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 173 tcaggatcatgctga 187
|||||||||||||||
Sbjct: 1177 tcaggatcatgctga 1191
>ISAzs11
Length = 1224
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 159 gccgcccgcgcccat 173
|||||||||||||||
Sbjct: 983 gccgcccgcgcccat 997
>ISPso1
Length = 1400
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 159 gccgcccgcgcccat 173
|||||||||||||||
Sbjct: 524 gccgcccgcgcccat 510
>ISMlo5
Length = 1664
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 1 atcagcagcttgccg 15
|||||||||||||||
Sbjct: 29 atcagcagcttgccg 15
>ISMav8
Length = 2064
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 81 gatgacgctggccgc 95
|||||||||||||||
Sbjct: 270 gatgacgctggccgc 284
>ISAZo16
Length = 2485
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 82 atgacgctggccgca 96
|||||||||||||||
Sbjct: 2272 atgacgctggccgca 2286
>ISRta2
Length = 1386
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 62 ggctggcgccgagcg 76
|||||||||||||||
Sbjct: 243 ggctggcgccgagcg 257
>ISMyca1
Length = 1968
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 131 cgccaaacgcgccga 145
|||||||||||||||
Sbjct: 1648 cgccaaacgcgccga 1662
>ISMaq7
Length = 1379
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 230 cactccgggctcgc 243
||||||||||||||
Sbjct: 422 cactccgggctcgc 409
>ISAeme11
Length = 1108
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 155 acacgccgcccgcg 168
||||||||||||||
Sbjct: 386 acacgccgcccgcg 373
>ISBast1
Length = 1357
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 56 tgatcaggctggcg 69
||||||||||||||
Sbjct: 1160 tgatcaggctggcg 1147
>ISGsi1
Length = 1310
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 124 cgcagcacgccaaa 137
||||||||||||||
Sbjct: 660 cgcagcacgccaaa 673
>ISNma6
Length = 1055
Score = 28.2 bits (14), Expect = 4.8
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 140 cgccgatcacgcagaaca 157
||||||||||||| ||||
Sbjct: 743 cgccgatcacgcaaaaca 760
>ISPa43
Length = 19903
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 159 gccgcccgcgccca 172
||||||||||||||
Sbjct: 7280 gccgcccgcgccca 7267
>ISStro1
Length = 973
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 227 cgccactccgggct 240
||||||||||||||
Sbjct: 286 cgccactccgggct 299
>ISPna4
Length = 1093
Score = 28.2 bits (14), Expect = 4.8
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 53 caatgatcaggctggcgc 70
|||||| |||||||||||
Sbjct: 32 caatgagcaggctggcgc 49
>ISShes11
Length = 7669
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 39 caacaccaagccga 52
||||||||||||||
Sbjct: 3417 caacaccaagccga 3404
>ISRhsp7
Length = 1397
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 57 gatcaggctggcgc 70
||||||||||||||
Sbjct: 282 gatcaggctggcgc 269
>ISMafe1
Length = 1745
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 1 atcagcagcttgcc 14
||||||||||||||
Sbjct: 669 atcagcagcttgcc 656
>ISXoo14
Length = 1310
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 145 atcacgcagaacac 158
||||||||||||||
Sbjct: 900 atcacgcagaacac 913
>ISMex30
Length = 1041
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 113 agcccggcatgcgc 126
||||||||||||||
Sbjct: 275 agcccggcatgcgc 262
>ISCARN58
Length = 2436
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 105 tgtgtagaagcccg 118
||||||||||||||
Sbjct: 98 tgtgtagaagcccg 85
>ISCARN57
Length = 1211
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 113 agcccggcatgcgc 126
||||||||||||||
Sbjct: 924 agcccggcatgcgc 911
>ISAzo15
Length = 2441
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 66 ggcgccgagcgtat 79
||||||||||||||
Sbjct: 1712 ggcgccgagcgtat 1699
>ISThsp9
Length = 6215
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 20 ccagcgtgaagccc 33
||||||||||||||
Sbjct: 5945 ccagcgtgaagccc 5932
>ISFpe1
Length = 2489
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 132 gccaaacgcgccga 145
||||||||||||||
Sbjct: 668 gccaaacgcgccga 681
>ISAau4
Length = 3898
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 119 gcatgcgcagcacg 132
||||||||||||||
Sbjct: 2682 gcatgcgcagcacg 2669
>ISRta4
Length = 1915
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 113 agcccggcatgcgc 126
||||||||||||||
Sbjct: 874 agcccggcatgcgc 887
>ISCro5
Length = 1372
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 195 gcttgccgcgctca 208
||||||||||||||
Sbjct: 543 gcttgccgcgctca 556
>ISKpn6
Length = 1540
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 18 cgccagcgtgaagc 31
||||||||||||||
Sbjct: 704 cgccagcgtgaagc 717
>ISGur9
Length = 2553
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 2 tcagcagcttgccg 15
||||||||||||||
Sbjct: 2178 tcagcagcttgccg 2165
>ISVch6
Length = 1088
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 172 atcaggatcatgct 185
||||||||||||||
Sbjct: 38 atcaggatcatgct 51
>ISXac1
Length = 1350
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 12 gccgctcgccagcg 25
||||||||||||||
Sbjct: 856 gccgctcgccagcg 869
>ISRtr4
Length = 932
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 69 gccgagcgtatcga 82
||||||||||||||
Sbjct: 535 gccgagcgtatcga 522
>ISH22
Length = 1700
Score = 28.2 bits (14), Expect = 4.8
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 71 cgagcgtatcgatgacgc 88
||||||||||| ||||||
Sbjct: 1152 cgagcgtatcggtgacgc 1169
>ISXc4
Length = 6938
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 12 gccgctcgccagcg 25
||||||||||||||
Sbjct: 5831 gccgctcgccagcg 5844
>ISXaca1
Length = 1350
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 12 gccgctcgccagcg 25
||||||||||||||
Sbjct: 856 gccgctcgccagcg 869
>ISXa1
Length = 3041
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 181 atgctgaggatatc 194
||||||||||||||
Sbjct: 2279 atgctgaggatatc 2266
>ISH7B
Length = 2924
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 198 tgccgcgctcacag 211
||||||||||||||
Sbjct: 503 tgccgcgctcacag 490
>IS292
Length = 2496
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 204 gctcacagctggtg 217
||||||||||||||
Sbjct: 2418 gctcacagctggtg 2431
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_315_length_243_cov_0.86747_ID_5800
(243 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISNha9 | IS256 | Nitrobacter hamburgensis | 34 | 0.077 | |
| IS1249 | IS256 | IS1249 | Corynebacterium xerosis | 32 | 0.30 |
| ISHwa32 | IS200/IS605 | IS1341 | Haloquadratum walsbyi | 30 | 1.2 |
| ISAmu1 | IS1595 | ISNwi1 | Akkermansia muciniphila | 30 | 1.2 |
| ISAnsp1 | IS1182 | Anaeromyxobacter sp. | 30 | 1.2 | |
| ISPsy20 | IS21 | Pseudomonas syringae | 30 | 1.2 | |
| IS1394 | IS30 | - | Pseudomonas alcaligenes | 30 | 1.2 |
| TnAs3 | Tn3 | Aeromonas salmonicida | 28 | 4.8 | |
| ISMyma9 | IS21 | Mycobacterium marinum | 28 | 4.8 | |
| ISSm4 | ISL3 | Serratia marcescens | 28 | 4.8 | |
| ISDha15 | IS1634 | Desulfitobacterium dichloroeliminans | 28 | 4.8 | |
| ISPna4 | IS5 | IS903 | Polaromonas naphthalenivorans | 28 | 4.8 |
| ISMesp2 | IS1380 | Mesorhizobium sp. | 28 | 4.8 | |
| ISStma9 | IS3 | IS51 | Stenotrophomonas maltophilia | 28 | 4.8 |
| ISCARN113 | ISL3 | Metagenomic data from CARNOULES | 28 | 4.8 | |
| ISThsp19 | IS21 | Thiomonas sp. | 28 | 4.8 | |
| ISCARN72 | IS630 | Metagenomic data from CARNOULES | 28 | 4.8 | |
| ISSba7 | IS66 | Shewanella baltica | 28 | 4.8 | |
| ISSsp5 | IS21 | Sphingomonas sp. | 28 | 4.8 | |
| ISEc17 | IS3 | IS3 | Escherichia coli | 28 | 4.8 |
| ISRhba1 | IS1595 | ISNwi1 | Rhodobacterales bacterium | 28 | 4.8 |
| ISOan3 | IS256 | Octadecabacter antarcticus | 28 | 4.8 | |
| ISDpr1 | IS4 | IS4Sa | delta proteobacterium | 28 | 4.8 |
| IS3H | IS3 | IS3 | Shigella dysenteriae | 28 | 4.8 |
| IS3F | IS3 | IS3 | Escherichia fergusonii | 28 | 4.8 |
| IS3 | IS3 | IS3 | Escherichia coli | 28 | 4.8 |
| IS1295 | IS256 | - | Rhodococcus sp. | 28 | 4.8 |
>ISNha9
Length = 1322
Score = 34.2 bits (17), Expect = 0.077
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 14 aggacatctaccgcgcc 30
|||||||||||||||||
Sbjct: 896 aggacatctaccgcgcc 912
>IS1249
Length = 1385
Score = 32.2 bits (16), Expect = 0.30
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 204 tttgcagcgccatctg 219
||||||||||||||||
Sbjct: 251 tttgcagcgccatctg 236
>ISHwa32
Length = 1473
Score = 30.2 bits (15), Expect = 1.2
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 92 aactcaagcacgagctcga 110
||||||||||| |||||||
Sbjct: 1085 aactcaagcacaagctcga 1103
>ISAmu1
Length = 2422
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 175 ggaaaacagaacccg 189
|||||||||||||||
Sbjct: 2285 ggaaaacagaacccg 2299
>ISAnsp1
Length = 1520
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 3 caacgaggccgagga 17
|||||||||||||||
Sbjct: 578 caacgaggccgagga 592
>ISPsy20
Length = 2572
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 168 ggcaccgggaaaaca 182
|||||||||||||||
Sbjct: 1923 ggcaccgggaaaaca 1937
>IS1394
Length = 1100
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 82 cagctcgaacaactc 96
|||||||||||||||
Sbjct: 303 cagctcgaacaactc 289
>TnAs3
Length = 18735
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 50 ccaccagcctgcag 63
||||||||||||||
Sbjct: 8511 ccaccagcctgcag 8524
>ISMyma9
Length = 2162
Score = 28.2 bits (14), Expect = 4.8
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 165 ccgggcaccgggaaaaca 182
||||||||||| ||||||
Sbjct: 1644 ccgggcaccggcaaaaca 1661
>ISSm4
Length = 9109
Score = 28.2 bits (14), Expect = 4.8
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 112 gcctttcaggtctaccac 129
|||||||||||| |||||
Sbjct: 5367 gcctttcaggtcaaccac 5350
>ISDha15
Length = 1860
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 120 ggtctaccactgga 133
||||||||||||||
Sbjct: 1489 ggtctaccactgga 1502
>ISPna4
Length = 1093
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 50 ccaccagcctgcag 63
||||||||||||||
Sbjct: 330 ccaccagcctgcag 343
>ISMesp2
Length = 1618
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 181 cagaacccggccga 194
||||||||||||||
Sbjct: 530 cagaacccggccga 517
>ISStma9
Length = 1234
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 192 cgaccacgcccatt 205
||||||||||||||
Sbjct: 639 cgaccacgcccatt 652
>ISCARN113
Length = 1329
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 195 ccacgcccatttgc 208
||||||||||||||
Sbjct: 900 ccacgcccatttgc 887
>ISThsp19
Length = 2657
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 48 cgccaccagcctgc 61
||||||||||||||
Sbjct: 2113 cgccaccagcctgc 2126
>ISCARN72
Length = 1111
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 87 cgaacaactcaagc 100
||||||||||||||
Sbjct: 329 cgaacaactcaagc 342
>ISSba7
Length = 2376
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 2 tcaacgaggccgag 15
||||||||||||||
Sbjct: 1034 tcaacgaggccgag 1047
>ISSsp5
Length = 2501
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 81 tcagctcgaacaac 94
||||||||||||||
Sbjct: 2178 tcagctcgaacaac 2165
>ISEc17
Length = 1258
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 141 ggaggcctttgccc 154
||||||||||||||
Sbjct: 658 ggaggcctttgccc 645
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 208 cagcgccatctgca 221
||||||||||||||
Sbjct: 904 cagcgccatctgca 891
>ISRhba1
Length = 2457
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 1 gtcaacgaggccga 14
||||||||||||||
Sbjct: 1572 gtcaacgaggccga 1559
>ISOan3
Length = 1437
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 230 tggatcgctacaag 243
||||||||||||||
Sbjct: 652 tggatcgctacaag 639
>ISDpr1
Length = 1325
Score = 28.2 bits (14), Expect = 4.8
Identities = 23/26 (88%)
Strand = Plus / Plus
Query: 144 ggcctttgcccacatcttttaccggg 169
|||||||||||| ||| ||||||||
Sbjct: 277 ggcctttgcccaaatcacttaccggg 302
>IS3H
Length = 1261
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 208 cagcgccatctgca 221
||||||||||||||
Sbjct: 907 cagcgccatctgca 894
>IS3F
Length = 1258
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 208 cagcgccatctgca 221
||||||||||||||
Sbjct: 904 cagcgccatctgca 891
>IS3
Length = 1258
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 141 ggaggcctttgccc 154
||||||||||||||
Sbjct: 658 ggaggcctttgccc 645
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 208 cagcgccatctgca 221
||||||||||||||
Sbjct: 904 cagcgccatctgca 891
>IS1295
Length = 1456
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 207 gcagcgccatctgc 220
||||||||||||||
Sbjct: 1257 gcagcgccatctgc 1244
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_316_length_243_cov_0.873494_ID_5802
(243 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISMac5 | IS1634 | Methanosarcina acetivorans | 32 | 0.30 | |
| ISSysp5 | IS5 | Synechococcus sp. | 30 | 1.2 | |
| ISBcen14 | IS66 | Burkholderia cenocepacia | 30 | 1.2 | |
| ISVch9 | IS5 | IS5 | Vibrio cholerae | 28 | 4.8 |
| ISAha3 | IS5 | IS903 | Acinetobacter haemolyticus | 28 | 4.8 |
| ISMae23 | IS630 | Microcystis aeruginosa | 28 | 4.8 | |
| ISBxe5 | IS5 | Burkholderia xenovorans | 28 | 4.8 | |
| ISRjo2 | IS630 | Rhodococcus jostii | 28 | 4.8 | |
| ISPfr19 | IS481 | Propionibacterium freudenreichii | 28 | 4.8 | |
| ISAcr5 | IS1380 | Acidiphilium cryptum | 28 | 4.8 | |
| ISCARN112 | ISNCY | IS1202 | Metagenomic data from CARNOULES | 28 | 4.8 |
| ISGsp1 | IS982 | Geobacillus sp. | 28 | 4.8 | |
| ISXac1 | IS4 | IS10 | Xanthomonas axonopodis | 28 | 4.8 |
| ISMma4 | IS1634 | Methanosarcina mazei | 28 | 4.8 | |
| ISAzo4 | IS21 | Azoarcus sp. | 28 | 4.8 | |
| ISXc4 | Tn3 | - | Xanthomonas campestris | 28 | 4.8 |
| ISXaca1 | IS4 | IS10 | Xanthomonas campestris | 28 | 4.8 |
| ISBs1 | IS982 | - | Bacillus stearothermophilus | 28 | 4.8 |
| IS1631 | IS21 | - | Bradyrhizobium japonicum | 28 | 4.8 |
| IS153 | IS3 | IS3 | Lactobacillus sanfranciscensis | 28 | 4.8 |
| IS1481A | IS4 | is10 | Xanthomonas campestris | 28 | 4.8 |
>ISMac5
Length = 1719
Score = 32.2 bits (16), Expect = 0.30
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 136 aagagaagaaagagca 151
||||||||||||||||
Sbjct: 953 aagagaagaaagagca 968
>ISSysp5
Length = 1398
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 8 gccgctgaatcgctg 22
|||||||||||||||
Sbjct: 1308 gccgctgaatcgctg 1322
>ISBcen14
Length = 2516
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 10 cgctgaatcgctggc 24
|||||||||||||||
Sbjct: 2136 cgctgaatcgctggc 2150
>ISVch9
Length = 1195
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 71 agcaatggtactgt 84
||||||||||||||
Sbjct: 267 agcaatggtactgt 280
>ISAha3
Length = 1039
Score = 28.2 bits (14), Expect = 4.8
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 102 aaattcatgcgcgagtgg 119
||||||||||||| ||||
Sbjct: 914 aaattcatgcgcgtgtgg 931
>ISMae23
Length = 1230
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 139 agaagaaagagcag 152
||||||||||||||
Sbjct: 122 agaagaaagagcag 135
>ISBxe5
Length = 1335
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 122 ggccaatcacccgc 135
||||||||||||||
Sbjct: 155 ggccaatcacccgc 168
>ISRjo2
Length = 1147
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 131 cccgcaagagaaga 144
||||||||||||||
Sbjct: 315 cccgcaagagaaga 328
>ISPfr19
Length = 1089
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 186 caggacgccgacgc 199
||||||||||||||
Sbjct: 723 caggacgccgacgc 736
>ISAcr5
Length = 1618
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 201 cgcgcgcgcaacag 214
||||||||||||||
Sbjct: 926 cgcgcgcgcaacag 939
>ISCARN112
Length = 1468
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 108 atgcgcgagtggat 121
||||||||||||||
Sbjct: 1276 atgcgcgagtggat 1289
>ISGsp1
Length = 1004
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 69 aaagcaatggtact 82
||||||||||||||
Sbjct: 554 aaagcaatggtact 567
>ISXac1
Length = 1350
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 21 tggcgcattggctg 34
||||||||||||||
Sbjct: 358 tggcgcattggctg 371
>ISMma4
Length = 1719
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 136 aagagaagaaagag 149
||||||||||||||
Sbjct: 953 aagagaagaaagag 966
>ISAzo4
Length = 2757
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 178 acaagccgcaggac 191
||||||||||||||
Sbjct: 989 acaagccgcaggac 1002
>ISXc4
Length = 6938
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 21 tggcgcattggctg 34
||||||||||||||
Sbjct: 5333 tggcgcattggctg 5346
>ISXaca1
Length = 1350
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 21 tggcgcattggctg 34
||||||||||||||
Sbjct: 358 tggcgcattggctg 371
>ISBs1
Length = 996
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 69 aaagcaatggtact 82
||||||||||||||
Sbjct: 546 aaagcaatggtact 559
>IS1631
Length = 2712
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 3 tcagcgccgctgaa 16
||||||||||||||
Sbjct: 66 tcagcgccgctgaa 79
>IS153
Length = 1127
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 211 acagcgaagccagt 224
||||||||||||||
Sbjct: 280 acagcgaagccagt 267
>IS1481A
Length = 1350
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 179 caagccgcaggacg 192
||||||||||||||
Sbjct: 681 caagccgcaggacg 694
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_317_length_243_cov_1.31325_ID_5804
(243 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISCARN56 | IS607 | Metagenomic data from CARNOULES | 34 | 0.077 | |
| TnAs3 | Tn3 | Aeromonas salmonicida | 28 | 4.8 | |
| ISMyma9 | IS21 | Mycobacterium marinum | 28 | 4.8 | |
| ISFK1 | IS21 | Bradyrhizobium japonicum | 28 | 4.8 | |
| ISNma1 | IS5 | ISH1 | Natrialba magadii | 28 | 4.8 |
| ISAau2 | IS21 | Arthrobacter aurescens | 28 | 4.8 | |
| ISRso14 | IS3 | IS407 | Ralstonia solanacearum | 28 | 4.8 |
| ISRm14 | IS66 | - | Sinorhizobium meliloti | 28 | 4.8 |
| ISMt3 | IS21 | - | Mycobacterium tuberculosis | 28 | 4.8 |
| ISMbo1 | IS21 | - | Mycobacterium bovis | 28 | 4.8 |
>ISCARN56
Length = 1894
Score = 34.2 bits (17), Expect = 0.077
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 22 ccgcgcgattgccgacc 38
|||||||||||||||||
Sbjct: 1533 ccgcgcgattgccgacc 1549
>TnAs3
Length = 18735
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 12 tcggcgatcaccgc 25
||||||||||||||
Sbjct: 10154 tcggcgatcaccgc 10167
>ISMyma9
Length = 2162
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 11 ctcggcgatcaccg 24
||||||||||||||
Sbjct: 309 ctcggcgatcaccg 296
>ISFK1
Length = 2592
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 13 cggcgatcaccgcg 26
||||||||||||||
Sbjct: 1422 cggcgatcaccgcg 1409
>ISNma1
Length = 934
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 7 tcacctcggcgatc 20
||||||||||||||
Sbjct: 781 tcacctcggcgatc 768
>ISAau2
Length = 2222
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 11 ctcggcgatcaccg 24
||||||||||||||
Sbjct: 339 ctcggcgatcaccg 326
>ISRso14
Length = 1234
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 148 atacaagcctgaga 161
||||||||||||||
Sbjct: 424 atacaagcctgaga 437
>ISRm14
Length = 2695
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 14 ggcgatcaccgcgc 27
||||||||||||||
Sbjct: 689 ggcgatcaccgcgc 676
>ISMt3
Length = 2213
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 11 ctcggcgatcaccg 24
||||||||||||||
Sbjct: 338 ctcggcgatcaccg 325
>ISMbo1
Length = 2212
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 11 ctcggcgatcaccg 24
||||||||||||||
Sbjct: 338 ctcggcgatcaccg 325
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_318_length_243_cov_0.873494_ID_5806
(243 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISGpo1 | IS256 | Gordonia polyisoprenivorans | 32 | 0.30 | |
| ISMdi7 | IS21 | Methylobacterium dichloromethanicum | 32 | 0.30 | |
| ISChy6 | IS481 | Carboxydothermus hydrogenoformans | 32 | 0.30 | |
| ISSme2 | IS21 | Sinorhizobium medicae | 32 | 0.30 | |
| IS493 | IS5 | ISL2 | Streptomyces lividans | 32 | 0.30 |
| ISAzs24 | IS3 | IS51 | Azospirillum sp. | 30 | 1.2 |
| ISRel19 | IS66 | Rhizobium etli | 30 | 1.2 | |
| ISAtu6 | IS66 | - | Agrobacterium tumefaciens | 30 | 1.2 |
| ISL4 | IS110 | - | Lactobacillus delbrueckii | 30 | 1.2 |
| IS1131 | IS66 | - | Agrobacterium tumefaciens | 30 | 1.2 |
| ISNma24 | IS200/IS605 | IS1341 | Natrialba magadii | 28 | 4.8 |
| ISAzs17 | Tn3 | Azospirillum sp. | 28 | 4.8 | |
| ISStu1 | IS5 | ISL2 | Streptomyces turgidiscabies | 28 | 4.8 |
| ISSar1 | IS5 | ISL2 | Salinispora arenicola | 28 | 4.8 |
| ISCgl4 | IS1380 | Corynebacterium glutamicum | 28 | 4.8 | |
| ISMex8 | IS21 | Methylobacterium extorquens | 28 | 4.8 | |
| ISCARN34 | IS1380 | Metagenomic data from CARNOULES | 28 | 4.8 | |
| ISSba14 | Tn3 | Shewanella baltica | 28 | 4.8 | |
| ISAli10 | IS66 | Azospirillum lipoferum | 28 | 4.8 | |
| ISFsp10 | IS66 | ISBst12 | Frankia sp. | 28 | 4.8 |
| ISAau4 | Tn3 | Arthrobacter aurescens | 28 | 4.8 | |
| ISSod15 | IS3 | IS3 | Shewanella oneidensis | 28 | 4.8 |
| ISSysp1 | IS1595 | IS1595 | Synechococcus sp | 28 | 4.8 |
| ISBlo1 | IS21 | Bifidobacterium longum | 28 | 4.8 | |
| ISFlsp1 | IS21 | Flavobacterium sp | 28 | 4.8 | |
| ISRtr1 | IS256 | - | Rhizobium tropici | 28 | 4.8 |
| ISMav1 | IS21 | - | Mycobacterium avium | 28 | 4.8 |
| IS1612 | IS21 | - | Mycobacterium avium | 28 | 4.8 |
| IS1311 | IS256 | - | Mycobacterium avium | 28 | 4.8 |
| IS1245 | IS256 | - | Mycobacterium avium | 28 | 4.8 |
>ISGpo1
Length = 1432
Score = 32.2 bits (16), Expect = 0.30
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 47 caacaccaacgaaggt 62
||||||||||||||||
Sbjct: 130 caacaccaacgaaggt 145
>ISMdi7
Length = 2568
Score = 32.2 bits (16), Expect = 0.30
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 144 tttcttctgcatggat 159
||||||||||||||||
Sbjct: 548 tttcttctgcatggat 563
>ISChy6
Length = 3020
Score = 32.2 bits (16), Expect = 0.30
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 183 atcccgggggtggccc 198
||||||||||||||||
Sbjct: 2711 atcccgggggtggccc 2726
>ISSme2
Length = 2219
Score = 32.2 bits (16), Expect = 0.30
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 99 gaaggccggagcggcg 114
||||||||||||||||
Sbjct: 2116 gaaggccggagcggcg 2101
>IS493
Length = 1643
Score = 32.2 bits (16), Expect = 0.30
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 61 gtgtcgatgatgccgt 76
||||||||||||||||
Sbjct: 1357 gtgtcgatgatgccgt 1342
>ISAzs24
Length = 1325
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 56 cgaaggtgtcgatga 70
|||||||||||||||
Sbjct: 852 cgaaggtgtcgatga 838
>ISRel19
Length = 2798
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 113 cgatcatgccggcga 127
|||||||||||||||
Sbjct: 2500 cgatcatgccggcga 2486
>ISAtu6
Length = 2798
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 113 cgatcatgccggcga 127
|||||||||||||||
Sbjct: 2500 cgatcatgccggcga 2486
>ISL4
Length = 1658
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 47 caacaccaacgaagg 61
|||||||||||||||
Sbjct: 1175 caacaccaacgaagg 1161
>IS1131
Length = 2773
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 113 cgatcatgccggcga 127
|||||||||||||||
Sbjct: 2478 cgatcatgccggcga 2464
>ISNma24
Length = 1544
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 51 accaacgaaggtgt 64
||||||||||||||
Sbjct: 432 accaacgaaggtgt 445
>ISAzs17
Length = 7252
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 128 tggccagggcgatc 141
||||||||||||||
Sbjct: 6886 tggccagggcgatc 6899
>ISStu1
Length = 889
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 63 gtcgatgatgccgt 76
||||||||||||||
Sbjct: 601 gtcgatgatgccgt 588
>ISSar1
Length = 914
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 63 gtcgatgatgccgt 76
||||||||||||||
Sbjct: 615 gtcgatgatgccgt 602
>ISCgl4
Length = 1653
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 124 gcgatggccagggc 137
||||||||||||||
Sbjct: 1327 gcgatggccagggc 1340
>ISMex8
Length = 2597
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 145 ttcttctgcatgga 158
||||||||||||||
Sbjct: 550 ttcttctgcatgga 563
>ISCARN34
Length = 1714
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 56 cgaaggtgtcgatg 69
||||||||||||||
Sbjct: 536 cgaaggtgtcgatg 523
>ISSba14
Length = 3815
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 190 gggtggcccgggcc 203
||||||||||||||
Sbjct: 1659 gggtggcccgggcc 1646
>ISAli10
Length = 2584
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 107 gagcggcgatcatg 120
||||||||||||||
Sbjct: 2391 gagcggcgatcatg 2404
>ISFsp10
Length = 1713
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 102 ggccggagcggcga 115
||||||||||||||
Sbjct: 484 ggccggagcggcga 497
>ISAau4
Length = 3898
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 128 tggccagggcgatc 141
||||||||||||||
Sbjct: 2845 tggccagggcgatc 2858
>ISSod15
Length = 1253
Score = 28.2 bits (14), Expect = 4.8
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 62 tgtcgatgatgccgtaaa 79
||||| ||||||||||||
Sbjct: 740 tgtcgctgatgccgtaaa 723
>ISSysp1
Length = 1032
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 186 ccgggggtggcccg 199
||||||||||||||
Sbjct: 616 ccgggggtggcccg 603
>ISBlo1
Length = 2590
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 192 gtggcccgggcccg 205
||||||||||||||
Sbjct: 608 gtggcccgggcccg 621
>ISFlsp1
Length = 2669
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 148 ttctgcatggattt 161
||||||||||||||
Sbjct: 558 ttctgcatggattt 571
>ISRtr1
Length = 1364
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 93 ctgagcgaaggccg 106
||||||||||||||
Sbjct: 932 ctgagcgaaggccg 919
>ISMav1
Length = 2536
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 123 ggcgatggccaggg 136
||||||||||||||
Sbjct: 2306 ggcgatggccaggg 2293
>IS1612
Length = 2532
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 123 ggcgatggccaggg 136
||||||||||||||
Sbjct: 2302 ggcgatggccaggg 2289
>IS1311
Length = 1416
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 117 catgccggcgatgg 130
||||||||||||||
Sbjct: 1013 catgccggcgatgg 1000
>IS1245
Length = 1414
Score = 28.2 bits (14), Expect = 4.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 117 catgccggcgatgg 130
||||||||||||||
Sbjct: 1015 catgccggcgatgg 1002
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_319_length_242_cov_2.21212_ID_5808
(242 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISAhy1 | IS1595 | ISPna2 | Aeromonas hydrophila | 32 | 0.30 |
| ISAzs2 | IS21 | Azospirillum sp. | 30 | 1.2 | |
| ISThsp19 | IS21 | Thiomonas sp. | 30 | 1.2 | |
| ISAs9 | IS3 | IS3 | Aeromonas salmonicida | 28 | 4.7 |
| ISLil1 | IS256 | Leptonema illini | 28 | 4.7 | |
| ISNha9 | IS256 | Nitrobacter hamburgensis | 28 | 4.7 | |
| ISMpo9 | IS701 | Methylobacterium populi | 28 | 4.7 | |
| ISCur1 | IS1380 | Corynebacterium urealyticum | 28 | 4.7 | |
| ISAar16 | IS110 | Arthrobacter arilaitensis | 28 | 4.7 | |
| ISPfl3 | IS1182 | Pseudomonas fluorescens | 28 | 4.7 | |
| ISMex10 | ISL3 | Methylobacterium extorquens | 28 | 4.7 | |
| ISCARN78 | IS21 | Metagenomic data from CARNOULES | 28 | 4.7 | |
| ISAzo26 | IS91 | Azoarcus sp. | 28 | 4.7 | |
| ISThsp9 | Tn3 | Thiomonas sp. | 28 | 4.7 | |
| ISThsp7 | IS1634 | Thiomonas sp. | 28 | 4.7 | |
| ISVer1 | IS1595 | ISNwi1 | Bacterium Ellin514 | 28 | 4.7 |
| ISMsm2 | IS630 | Mycobacterium smegmatis | 28 | 4.7 | |
| ISAzo9 | IS630 | Azoarcus sp. | 28 | 4.7 | |
| ISRhosp8 | IS110 | Rhodococcus sp. | 28 | 4.7 | |
| ISGbe1 | IS3 | IS407 | Granulibacter bethesdensis | 28 | 4.7 |
| ISMmg4 | IS701 | Magnetospirillum magneticum | 28 | 4.7 | |
| IS987 | IS3 | IS51 | Mycobacterium bovis | 28 | 4.7 |
| IS986 | IS3 | IS51 | Mycobacterium tuberculosis | 28 | 4.7 |
| IS6110 | IS3 | IS51 | Mycobacterium tuberculosis | 28 | 4.7 |
| IS1415 | IS21 | - | Rhodococcus erythropolis | 28 | 4.7 |
| IS1113 | IS256 | - | Xanthomonas oryzae | 28 | 4.7 |
>ISAhy1
Length = 1032
Score = 32.2 bits (16), Expect = 0.30
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 94 ggccagccaccaggcg 109
||||||||||||||||
Sbjct: 466 ggccagccaccaggcg 481
>ISAzs2
Length = 2609
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 168 gccagacggcctgcc 182
|||||||||||||||
Sbjct: 1898 gccagacggcctgcc 1912
>ISThsp19
Length = 2657
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 130 cagcagtgcggtggt 144
|||||||||||||||
Sbjct: 2311 cagcagtgcggtggt 2297
>ISAs9
Length = 1626
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 165 ttagccagacggcc 178
||||||||||||||
Sbjct: 714 ttagccagacggcc 727
>ISLil1
Length = 1378
Score = 28.2 bits (14), Expect = 4.7
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 139 ggtggtgatgcctgccag 156
|||| |||||||||||||
Sbjct: 462 ggtgctgatgcctgccag 445
>ISNha9
Length = 1322
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 72 ggcgcagccagtgc 85
||||||||||||||
Sbjct: 118 ggcgcagccagtgc 131
>ISMpo9
Length = 1413
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 87 cggtgcgggccagc 100
||||||||||||||
Sbjct: 313 cggtgcgggccagc 300
>ISCur1
Length = 1627
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 86 ccggtgcgggccag 99
||||||||||||||
Sbjct: 1419 ccggtgcgggccag 1406
>ISAar16
Length = 1396
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 129 gcagcagtgcggtg 142
||||||||||||||
Sbjct: 799 gcagcagtgcggtg 786
>ISPfl3
Length = 1585
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 158 ttcagggttagcca 171
||||||||||||||
Sbjct: 1141 ttcagggttagcca 1128
>ISMex10
Length = 1754
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 137 gcggtggtgatgcc 150
||||||||||||||
Sbjct: 1505 gcggtggtgatgcc 1492
>ISCARN78
Length = 2644
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 148 gcctgccagtttca 161
||||||||||||||
Sbjct: 2059 gcctgccagtttca 2046
>ISAzo26
Length = 2604
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 55 cacggccgaaaccg 68
||||||||||||||
Sbjct: 2296 cacggccgaaaccg 2309
>ISThsp9
Length = 6215
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 145 gatgcctgccagtt 158
||||||||||||||
Sbjct: 4962 gatgcctgccagtt 4949
>ISThsp7
Length = 1920
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 100 ccaccaggcgatgg 113
||||||||||||||
Sbjct: 1168 ccaccaggcgatgg 1155
>ISVer1
Length = 2783
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 46 cagtgcaaccacgg 59
||||||||||||||
Sbjct: 566 cagtgcaaccacgg 553
>ISMsm2
Length = 1126
Score = 28.2 bits (14), Expect = 4.7
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 85 cccggtgcgggccagcca 102
||||| ||||||||||||
Sbjct: 637 cccggcgcgggccagcca 654
>ISAzo9
Length = 1483
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 73 gcgcagccagtgcc 86
||||||||||||||
Sbjct: 1292 gcgcagccagtgcc 1305
>ISRhosp8
Length = 1439
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 90 tgcgggccagccac 103
||||||||||||||
Sbjct: 364 tgcgggccagccac 377
>ISGbe1
Length = 1269
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 129 gcagcagtgcggtg 142
||||||||||||||
Sbjct: 552 gcagcagtgcggtg 539
>ISMmg4
Length = 1507
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 58 ggccgaaaccggct 71
||||||||||||||
Sbjct: 883 ggccgaaaccggct 870
>IS987
Length = 1355
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 158 ttcagggttagcca 171
||||||||||||||
Sbjct: 628 ttcagggttagcca 615
>IS986
Length = 1354
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 158 ttcagggttagcca 171
||||||||||||||
Sbjct: 627 ttcagggttagcca 614
>IS6110
Length = 1354
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 158 ttcagggttagcca 171
||||||||||||||
Sbjct: 628 ttcagggttagcca 615
>IS1415
Length = 2580
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 1 gatcagcaggtaaa 14
||||||||||||||
Sbjct: 812 gatcagcaggtaaa 799
>IS1113
Length = 1306
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 88 ggtgcgggccagcc 101
||||||||||||||
Sbjct: 832 ggtgcgggccagcc 845
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_320_length_242_cov_0.872727_ID_5810
(242 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISAeme5 | IS66 | Aeromonas media | 32 | 0.30 | |
| ISKpn25 | ISL3 | Klebsiella pneumoniae | 32 | 0.30 | |
| ISTsi3 | IS200/IS605 | Thermococcus sibiricus | 32 | 0.30 | |
| ISPlan1 | IS701 | Planococcus antarcticus | 32 | 0.30 | |
| TnAs1 | Tn3 | Aeromonas salmonicida | 30 | 1.2 | |
| ISSlgl1 | IS256 | IS1249 | Slackia heliotrinireducens | 30 | 1.2 |
| ISCARN43 | IS1595 | ISPna2 | Metagenomic data from CARNOULES | 30 | 1.2 |
| ISBj7_B | IS66 | Bradyrhizobium japonicum | 30 | 1.2 | |
| ISRde2 | IS3 | IS407 | Roseobacter denitrificans | 30 | 1.2 |
| ISHlsp1 | IS200/IS605 | IS605 | Halopiger sp. | 28 | 4.7 |
| ISNin1 | IS200/IS605 | IS605 | Natronolimnobius innermongolicus | 28 | 4.7 |
| ISNpe8 | IS66 | ISBst12 | Natrinema pellirubrum | 28 | 4.7 |
| ISHth1 | ISH6 | Halococcus thailandensis | 28 | 4.7 | |
| ISNph6 | IS200/IS605 | Natronomonas pharaonis | 28 | 4.7 | |
| ISRel16 | IS21 | Rhizobium etli | 28 | 4.7 | |
| ISGau8 | IS30 | Gemmatimonas aurantiaca | 28 | 4.7 | |
| ISShes11 | Tn3 | Shewanella sp. | 28 | 4.7 | |
| ISMsm12 | IS1380 | Mycobacterium smegmatis | 28 | 4.7 | |
| ISAde1 | IS66 | Anaeromyxobacter dehalogenans | 28 | 4.7 | |
| ISMex39 | IS21 | Methylobacterium extorquens | 28 | 4.7 | |
| ISMex30 | IS630 | Methylobacterium extorquens | 28 | 4.7 | |
| ISMdi2 | ISL3 | Methylobacterium dichloromethanicum | 28 | 4.7 | |
| ISAzo14 | IS1634 | Azoarcus sp. | 28 | 4.7 | |
| ISRhru1 | IS1595 | ISSod11 | Rhodospirillum rubrum | 28 | 4.7 |
| ISButh2 | IS3 | IS2 | Burkholderia thailandensis | 28 | 4.7 |
| ISH10B | IS66 | ISBst12 | Halobacterium sp | 28 | 4.7 |
| IS883 | IS66 | Ralstonia eutropha | 28 | 4.7 | |
| ISSfr1 | IS110 | IS1111 | Sinorhizobium fredii | 28 | 4.7 |
| ISXc4 | Tn3 | - | Xanthomonas campestris | 28 | 4.7 |
| ISBugl1 | IS3 | IS2 | Burkholderia glumae | 28 | 4.7 |
| IS4811 | IS5 | IS1031 | Streptomyces lividans | 28 | 4.7 |
| IS220 | IS1380 | - | Mycobacterium fortuitum | 28 | 4.7 |
| IS1417 | IS3 | IS2 | Burkholderia glumae | 28 | 4.7 |
>ISAeme5
Length = 2438
Score = 32.2 bits (16), Expect = 0.30
Identities = 25/28 (89%)
Strand = Plus / Plus
Query: 17 gagcagcaagagcgcggtgatgccgagc 44
|||||| | |||||| ||||||||||||
Sbjct: 1939 gagcagaaggagcgcagtgatgccgagc 1966
>ISKpn25
Length = 8154
Score = 32.2 bits (16), Expect = 0.30
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 107 gagcaccaggccggtc 122
||||||||||||||||
Sbjct: 6294 gagcaccaggccggtc 6279
>ISTsi3
Length = 1883
Score = 32.2 bits (16), Expect = 0.30
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 70 tctcacgtttggcggt 85
||||||||||||||||
Sbjct: 1472 tctcacgtttggcggt 1487
>ISPlan1
Length = 1352
Score = 32.2 bits (16), Expect = 0.30
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 127 caaaatgtgctgctgg 142
||||||||||||||||
Sbjct: 383 caaaatgtgctgctgg 368
>TnAs1
Length = 6694
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 52 tgccgccgatcagcg 66
|||||||||||||||
Sbjct: 6101 tgccgccgatcagcg 6087
>ISSlgl1
Length = 1341
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 144 acttgcgcctgaacg 158
|||||||||||||||
Sbjct: 402 acttgcgcctgaacg 388
>ISCARN43
Length = 1086
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 177 agcgcggccacgacg 191
|||||||||||||||
Sbjct: 714 agcgcggccacgacg 700
>ISBj7_B
Length = 2865
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 53 gccgccgatcagcga 67
|||||||||||||||
Sbjct: 727 gccgccgatcagcga 741
>ISRde2
Length = 1203
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 106 agagcaccaggccgg 120
|||||||||||||||
Sbjct: 113 agagcaccaggccgg 127
>ISHlsp1
Length = 1853
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 37 tgccgagcagggag 50
||||||||||||||
Sbjct: 1779 tgccgagcagggag 1792
>ISNin1
Length = 1902
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 37 tgccgagcagggag 50
||||||||||||||
Sbjct: 1828 tgccgagcagggag 1841
>ISNpe8
Length = 1650
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 17 gagcagcaagagcg 30
||||||||||||||
Sbjct: 296 gagcagcaagagcg 309
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 17 gagcagcaagagcg 30
||||||||||||||
Sbjct: 317 gagcagcaagagcg 330
>ISHth1
Length = 1445
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 50 gatgccgccgatca 63
||||||||||||||
Sbjct: 500 gatgccgccgatca 513
>ISNph6
Length = 1854
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 37 tgccgagcagggag 50
||||||||||||||
Sbjct: 1780 tgccgagcagggag 1793
>ISRel16
Length = 2597
Score = 28.2 bits (14), Expect = 4.7
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 50 gatgccgccgatcagcga 67
||||| ||||||||||||
Sbjct: 1494 gatgcggccgatcagcga 1477
>ISGau8
Length = 1364
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 149 cgcctgaacggccg 162
||||||||||||||
Sbjct: 1196 cgcctgaacggccg 1209
>ISShes11
Length = 7669
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 180 gcggccacgacggc 193
||||||||||||||
Sbjct: 3402 gcggccacgacggc 3389
>ISMsm12
Length = 3256
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 23 caagagcgcggtga 36
||||||||||||||
Sbjct: 1525 caagagcgcggtga 1512
>ISAde1
Length = 2957
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 49 agatgccgccgatc 62
||||||||||||||
Sbjct: 1003 agatgccgccgatc 1016
>ISMex39
Length = 2456
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 52 tgccgccgatcagc 65
||||||||||||||
Sbjct: 523 tgccgccgatcagc 510
>ISMex30
Length = 1041
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 211 cgtgcgggctgccg 224
||||||||||||||
Sbjct: 914 cgtgcgggctgccg 901
>ISMdi2
Length = 1689
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 81 gcggtggtttgggc 94
||||||||||||||
Sbjct: 26 gcggtggtttgggc 39
>ISAzo14
Length = 1925
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 147 tgcgcctgaacggc 160
||||||||||||||
Sbjct: 1740 tgcgcctgaacggc 1753
>ISRhru1
Length = 1027
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 35 gatgccgagcaggg 48
||||||||||||||
Sbjct: 964 gatgccgagcaggg 951
>ISButh2
Length = 1336
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 180 gcggccacgacggc 193
||||||||||||||
Sbjct: 898 gcggccacgacggc 911
>ISH10B
Length = 1629
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 17 gagcagcaagagcg 30
||||||||||||||
Sbjct: 296 gagcagcaagagcg 309
>IS883
Length = 2461
Score = 28.2 bits (14), Expect = 4.7
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 135 gctgctggtacttgcgcc 152
||||| ||||||||||||
Sbjct: 1611 gctgccggtacttgcgcc 1628
>ISSfr1
Length = 1359
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 47 ggagatgccgccga 60
||||||||||||||
Sbjct: 887 ggagatgccgccga 874
>ISXc4
Length = 6938
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 156 acggccgcgcgggc 169
||||||||||||||
Sbjct: 584 acggccgcgcgggc 571
>ISBugl1
Length = 1335
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 180 gcggccacgacggc 193
||||||||||||||
Sbjct: 898 gcggccacgacggc 911
>IS4811
Length = 5396
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 45 agggagatgccgcc 58
||||||||||||||
Sbjct: 1563 agggagatgccgcc 1576
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 224 gacggtttcggcgc 237
||||||||||||||
Sbjct: 4112 gacggtttcggcgc 4125
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 204 gacaccgcgtgcgg 217
||||||||||||||
Sbjct: 4934 gacaccgcgtgcgg 4921
>IS220
Length = 3257
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 23 caagagcgcggtga 36
||||||||||||||
Sbjct: 1525 caagagcgcggtga 1512
>IS1417
Length = 1335
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 180 gcggccacgacggc 193
||||||||||||||
Sbjct: 898 gcggccacgacggc 911
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_321_length_242_cov_0.872727_ID_5812
(242 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISCARN103 | IS1182 | Metagenomic data from CARNOULES | 30 | 1.2 | |
| ISDra1 | IS4 | IS10 | Deinococcus radiodurans | 30 | 1.2 |
| ISAeme20 | IS3 | IS3 | Aeromonas media | 28 | 4.7 |
| ISHwa16 | IS630 | Haloquadratum walsbyi | 28 | 4.7 | |
| ISPfr11 | IS3 | IS3 | Propionibacterium freudenreichii | 28 | 4.7 |
| ISPfr6 | ISL3 | Propionibacterium freudenreichii | 28 | 4.7 | |
| ISMch8 | IS5 | IS5 | Methylobacterium chloromethanicum | 28 | 4.7 |
| ISStma4 | IS110 | Stenotrophomonas maltophilia | 28 | 4.7 | |
| ISYps3 | Tn3 | Yersinia pseudotuberculosis | 28 | 4.7 | |
| ISXoo13 | ISL3 | Xanthomonas oryzae | 28 | 4.7 |
>ISCARN103
Length = 1410
Score = 30.2 bits (15), Expect = 1.2
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 162 caccggtacgccgctatcc 180
|||||||||||||| ||||
Sbjct: 842 caccggtacgccgcaatcc 824
>ISDra1
Length = 1207
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 105 agcatctcgtggatg 119
|||||||||||||||
Sbjct: 1091 agcatctcgtggatg 1105
>ISAeme20
Length = 1264
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 36 cttctggcggcttc 49
||||||||||||||
Sbjct: 157 cttctggcggcttc 144
>ISHwa16
Length = 1066
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 214 tcgtcccgctcaag 227
||||||||||||||
Sbjct: 535 tcgtcccgctcaag 522
>ISPfr11
Length = 1315
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 153 tatgcggcgcaccg 166
||||||||||||||
Sbjct: 556 tatgcggcgcaccg 543
>ISPfr6
Length = 1436
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 157 cggcgcaccggtac 170
||||||||||||||
Sbjct: 381 cggcgcaccggtac 368
>ISMch8
Length = 1494
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 6 cgagggcggaccgg 19
||||||||||||||
Sbjct: 832 cgagggcggaccgg 845
>ISStma4
Length = 1249
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 38 tctggcggcttccg 51
||||||||||||||
Sbjct: 214 tctggcggcttccg 227
>ISYps3
Length = 5723
Score = 28.2 bits (14), Expect = 4.7
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 73 ccctgctttcaaacgaat 90
||||||||||| ||||||
Sbjct: 3677 ccctgctttcagacgaat 3660
>ISXoo13
Length = 1312
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 161 gcaccggtacgccg 174
||||||||||||||
Sbjct: 458 gcaccggtacgccg 445
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_322_length_242_cov_0.866667_ID_5814
(242 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISUnCu16 | IS66 | ISBst12 | Uncultured bacterium | 30 | 1.2 |
| ISAmu1 | IS1595 | ISNwi1 | Akkermansia muciniphila | 30 | 1.2 |
| ISSde10 | IS3 | IS3 | Shewanella denitrificans | 30 | 1.2 |
| ISOba2 | IS3 | IS407 | Oceanicola batsensis | 30 | 1.2 |
| ISMba13 | IS1634 | Methanosarcina barkeri | 30 | 1.2 | |
| ISAs32 | IS3 | IS51 | Aeromonas salmonicida | 28 | 4.7 |
| ISBj11 | IS21 | Bradyrhizobium japonicum | 28 | 4.7 | |
| ISOrsp1 | IS256 | IS1249 | Oribacterium sp. | 28 | 4.7 |
| ISKra1 | IS5 | IS427 | Ktedonobacter racemifer | 28 | 4.7 |
| ISSpn10 | IS110 | Streptococcus pneumoniae | 28 | 4.7 | |
| ISSlo1 | IS110 | IS1111 | Shewanella loihica | 28 | 4.7 |
| ISCbu1 | ISAs1 | Coxiella burnetii | 28 | 4.7 | |
| ISSod21 | IS110 | IS1111 | Shewanella oneidensis | 28 | 4.7 |
| ISGlo3 | IS481 | Geobacter lovleyi | 28 | 4.7 | |
| ISHne1 | IS3 | IS51 | Hyphomonas neptunium | 28 | 4.7 |
| ISTko1 | IS607 | Thermococcus kodakarensis | 28 | 4.7 | |
| ISPfu4 | IS607 | Pyrococcus furiosus | 28 | 4.7 | |
| ISRme1 | IS5 | - | Ralstonia metallidurans | 28 | 4.7 |
>ISUnCu16
Length = 1532
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 29 ttggccgcatcctga 43
|||||||||||||||
Sbjct: 896 ttggccgcatcctga 882
>ISAmu1
Length = 2422
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 45 aatgctggaaaatca 59
|||||||||||||||
Sbjct: 12 aatgctggaaaatca 26
>ISSde10
Length = 1671
Score = 30.2 bits (15), Expect = 1.2
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 164 tgtggcgcaggctgattta 182
||||| |||||||||||||
Sbjct: 708 tgtggtgcaggctgattta 726
>ISOba2
Length = 1253
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 112 gtcggtaaaacggcg 126
|||||||||||||||
Sbjct: 600 gtcggtaaaacggcg 614
>ISMba13
Length = 1706
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 41 tgaaaatgctggaaa 55
|||||||||||||||
Sbjct: 420 tgaaaatgctggaaa 434
>ISAs32
Length = 1232
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 1 cagatcgtcggctg 14
||||||||||||||
Sbjct: 804 cagatcgtcggctg 817
>ISBj11
Length = 2649
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 66 gatctcctcgcact 79
||||||||||||||
Sbjct: 1496 gatctcctcgcact 1509
>ISOrsp1
Length = 1345
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 145 cgtttttgttttct 158
||||||||||||||
Sbjct: 809 cgtttttgttttct 796
>ISKra1
Length = 1391
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 149 tttgttttctcctc 162
||||||||||||||
Sbjct: 934 tttgttttctcctc 921
>ISSpn10
Length = 1536
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 145 cgtttttgttttct 158
||||||||||||||
Sbjct: 464 cgtttttgttttct 451
>ISSlo1
Length = 1345
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 110 aagtcggtaaaacg 123
||||||||||||||
Sbjct: 154 aagtcggtaaaacg 167
>ISCbu1
Length = 1324
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 43 aaaatgctggaaaa 56
||||||||||||||
Sbjct: 1203 aaaatgctggaaaa 1216
>ISSod21
Length = 1345
Score = 28.2 bits (14), Expect = 4.7
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 101 gtacccgttaagtcggta 118
||||||||||| ||||||
Sbjct: 398 gtacccgttaaatcggta 415
>ISGlo3
Length = 1076
Score = 28.2 bits (14), Expect = 4.7
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 53 aaaatcaaaacctgatct 70
|||||||||||| |||||
Sbjct: 1021 aaaatcaaaacccgatct 1038
>ISHne1
Length = 1324
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 165 gtggcgcaggctga 178
||||||||||||||
Sbjct: 210 gtggcgcaggctga 223
>ISTko1
Length = 1960
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 51 ggaaaatcaaaacc 64
||||||||||||||
Sbjct: 155 ggaaaatcaaaacc 168
>ISPfu4
Length = 1961
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 51 ggaaaatcaaaacc 64
||||||||||||||
Sbjct: 155 ggaaaatcaaaacc 168
>ISRme1
Length = 1331
Score = 28.2 bits (14), Expect = 4.7
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 21 caagaccgttggccgcat 38
|||||||||||| |||||
Sbjct: 1050 caagaccgttgggcgcat 1067
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_323_length_242_cov_0.830303_ID_5816
(242 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISGeob1 | IS5 | ISL2 | Geodermatophilus obscurus | 38 | 0.005 |
| ISAzo21 | IS66 | Azoarcus sp. | 36 | 0.019 | |
| ISAzo19 | IS66 | Azoarcus sp. | 36 | 0.019 | |
| ISBj11 | IS21 | Bradyrhizobium japonicum | 32 | 0.30 | |
| ISHne2 | IS481 | Hyphomonas neptunium | 32 | 0.30 | |
| ISPa40 | Tn3 | Pseudomonas aeruginosa | 30 | 1.2 | |
| ISGeob4 | IS5 | ISL2 | Geodermatophilus obscurus | 30 | 1.2 |
| ISCARN40 | IS256 | Metagenomic data from CARNOULES | 30 | 1.2 | |
| ISRfr1 | IS630 | - | Rhizobium fredii | 30 | 1.2 |
| ISHti12 | IS701 | Halorhabdus tiamatea | 28 | 4.7 | |
| ISHmu8 | IS200/IS605 | IS1341 | Halomicrobium mukohataei | 28 | 4.7 |
| ISHsi1 | IS1595 | ISH4 | Haloarcula sinaiiensis | 28 | 4.7 |
| ISFK1 | IS21 | Bradyrhizobium japonicum | 28 | 4.7 | |
| ISSri1 | ISKra4 | ISKra4 | Streptomyces rimosus | 28 | 4.7 |
| ISGlo6 | IS3 | IS150 | Geobacter lovleyi | 28 | 4.7 |
| ISNph21 | IS200/IS605 | IS1341 | Natronomonas pharaonis | 28 | 4.7 |
| ISPak1 | IS5 | IS427 | Paracoccus alkenifer | 28 | 4.7 |
| ISMtsp19 | IS701 | Methylobacterium sp. | 28 | 4.7 | |
| ISCARN27 | IS256 | Metagenomic data from CARNOULES | 28 | 4.7 | |
| IS1512 | IS256 | - | Mycobacterium gordonae | 28 | 4.7 |
>ISGeob1
Length = 1020
Score = 38.2 bits (19), Expect = 0.005
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 72 tcgacgaccggatcggccgctcg 94
||||| |||||||||||||||||
Sbjct: 326 tcgacaaccggatcggccgctcg 348
>ISAzo21
Length = 2423
Score = 36.2 bits (18), Expect = 0.019
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 69 agttcgacgaccggatcggccg 90
|||||||||||| |||||||||
Sbjct: 855 agttcgacgacctgatcggccg 834
>ISAzo19
Length = 2423
Score = 36.2 bits (18), Expect = 0.019
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 69 agttcgacgaccggatcggccg 90
|||||||||||| |||||||||
Sbjct: 855 agttcgacgacctgatcggccg 834
>ISBj11
Length = 2649
Score = 32.2 bits (16), Expect = 0.30
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 132 aggcgcgcggtctcgactac 151
||||||||||| ||||||||
Sbjct: 1742 aggcgcgcggtgtcgactac 1723
>ISHne2
Length = 1316
Score = 32.2 bits (16), Expect = 0.30
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 77 gaccggatcggccgct 92
||||||||||||||||
Sbjct: 884 gaccggatcggccgct 869
>ISPa40
Length = 6592
Score = 30.2 bits (15), Expect = 1.2
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 39 gcgagctgaaggctcagct 57
|||||| ||||||||||||
Sbjct: 3510 gcgagccgaaggctcagct 3528
>ISGeob4
Length = 982
Score = 30.2 bits (15), Expect = 1.2
Identities = 21/23 (91%)
Strand = Plus / Plus
Query: 72 tcgacgaccggatcggccgctcg 94
||||| |||| ||||||||||||
Sbjct: 330 tcgaccaccgaatcggccgctcg 352
>ISCARN40
Length = 1264
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 227 gagaaggcgctggac 241
|||||||||||||||
Sbjct: 194 gagaaggcgctggac 208
>ISRfr1
Length = 1136
Score = 30.2 bits (15), Expect = 1.2
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 127 ctggaaggcgcgcggtctc 145
||||||||||| |||||||
Sbjct: 449 ctggaaggcgcacggtctc 467
>ISHti12
Length = 1277
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 10 cttcgtcttcgtca 23
||||||||||||||
Sbjct: 869 cttcgtcttcgtca 856
>ISHmu8
Length = 1508
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 120 tcaaccactggaag 133
||||||||||||||
Sbjct: 855 tcaaccactggaag 868
>ISHsi1
Length = 1053
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 86 ggccgctcggacct 99
||||||||||||||
Sbjct: 934 ggccgctcggacct 947
>ISFK1
Length = 2592
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 215 gatcacggcctgga 228
||||||||||||||
Sbjct: 1472 gatcacggcctgga 1459
>ISSri1
Length = 2269
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 98 ctgctcgacatgcg 111
||||||||||||||
Sbjct: 837 ctgctcgacatgcg 824
>ISGlo6
Length = 1269
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 215 gatcacggcctgga 228
||||||||||||||
Sbjct: 184 gatcacggcctgga 197
>ISNph21
Length = 1518
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 120 tcaaccactggaag 133
||||||||||||||
Sbjct: 865 tcaaccactggaag 878
>ISPak1
Length = 853
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 78 accggatcggccgc 91
||||||||||||||
Sbjct: 494 accggatcggccgc 481
>ISMtsp19
Length = 1486
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 133 ggcgcgcggtctcg 146
||||||||||||||
Sbjct: 1251 ggcgcgcggtctcg 1238
>ISCARN27
Length = 1356
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 226 ggagaaggcgctgg 239
||||||||||||||
Sbjct: 394 ggagaaggcgctgg 407
>IS1512
Length = 1314
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 19 cgtcaacgctgacg 32
||||||||||||||
Sbjct: 620 cgtcaacgctgacg 633
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_324_length_242_cov_1.12727_ID_5818
(242 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISMex2 | IS481 | Methylobacterium extorquens | 32 | 0.30 | |
| ISGte1 | IS256 | Gordonia terrae | 30 | 1.2 | |
| ISMgi5 | IS256 | Mycobacterium gilvum | 30 | 1.2 | |
| ISAar20 | ISL3 | Arthrobacter arilaitensis | 30 | 1.2 | |
| ISStma14 | IS3 | IS3 | Stenotrophomonas maltophilia | 30 | 1.2 |
| ISTha2 | ISAs1 | Thauera sp. | 30 | 1.2 | |
| ISSav7 | IS481 | Streptomyces avermitilis | 30 | 1.2 | |
| ISSag8 | IS1182 | Streptococcus agalactiae | 30 | 1.2 | |
| IS1563 | IS1182 | Streptococcus agalactiae | 30 | 1.2 | |
| ISEnca1 | IS1380 | Enterococcus casseliflavus | 30 | 1.2 | |
| ISRel2 | IS481 | Rhizobium etli | 30 | 1.2 | |
| ISCmi2 | IS481 | Clavibacter michiganensis | 30 | 1.2 | |
| ISAzo3 | ISAs1 | Azoarcus sp. | 30 | 1.2 | |
| ISEcp1 | IS1380 | - | Escherichia coli | 30 | 1.2 |
| ISEc9 | IS1380 | - | Escherichia coli | 30 | 1.2 |
| ISShvi3 | IS91 | Shewanella violacea | 28 | 4.7 | |
| ISThsp18 | IS1182 | Thiomonas sp. | 28 | 4.7 | |
| ISAzo39 | IS5 | IS5 | Azoarcus sp. | 28 | 4.7 |
| ISMsm6 | IS1634 | Mycobacterium smegmatis | 28 | 4.7 | |
| ISMmg3 | IS4 | IS10 | Magnetospirillum magnetotacticum | 28 | 4.7 |
| ISBlo2 | IS21 | Bifidobacterium longum | 28 | 4.7 | |
| ISPsy4 | IS21 | Pseudomonas syringae | 28 | 4.7 | |
| ISTesp1 | IS3 | IS51 | Terrabacter sp. | 28 | 4.7 |
| ISPa42 | Tn3 | Pseudomonas aeruginosa | 28 | 4.7 | |
| ISNGR9 | IS5 | IS427 | Rhizobium sp | 28 | 4.7 |
| ISEfm1 | IS982 | - | Enterococcus faecium | 28 | 4.7 |
| ISBfu1 | IS481 | - | Brevibacterium fuscum | 28 | 4.7 |
| IS19 | IS982 | - | Lactococcus lactis | 28 | 4.7 |
>ISMex2
Length = 1031
Score = 32.2 bits (16), Expect = 0.30
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 16 accgagcttcttgatg 31
||||||||||||||||
Sbjct: 511 accgagcttcttgatg 496
>ISGte1
Length = 1503
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 23 ttcttgatgaccttg 37
|||||||||||||||
Sbjct: 1211 ttcttgatgaccttg 1197
>ISMgi5
Length = 1470
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 23 ttcttgatgaccttg 37
|||||||||||||||
Sbjct: 1184 ttcttgatgaccttg 1170
>ISAar20
Length = 1449
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 13 gccaccgagcttctt 27
|||||||||||||||
Sbjct: 1245 gccaccgagcttctt 1231
>ISStma14
Length = 1231
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 122 aggaagatctggccg 136
|||||||||||||||
Sbjct: 554 aggaagatctggccg 568
>ISTha2
Length = 1268
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 5 cgcacaccgccaccg 19
|||||||||||||||
Sbjct: 236 cgcacaccgccaccg 222
>ISSav7
Length = 2992
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 17 ccgagcttcttgatg 31
|||||||||||||||
Sbjct: 2447 ccgagcttcttgatg 2433
>ISSag8
Length = 1538
Score = 30.2 bits (15), Expect = 1.2
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 141 taatcgaaatcacgttggt 159
|||||||||||| ||||||
Sbjct: 124 taatcgaaatcaagttggt 142
>IS1563
Length = 1540
Score = 30.2 bits (15), Expect = 1.2
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 141 taatcgaaatcacgttggt 159
|||||||||||| ||||||
Sbjct: 124 taatcgaaatcaagttggt 142
>ISEnca1
Length = 1658
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 22 cttcttgatgacctt 36
|||||||||||||||
Sbjct: 618 cttcttgatgacctt 604
>ISRel2
Length = 1047
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 17 ccgagcttcttgatg 31
|||||||||||||||
Sbjct: 514 ccgagcttcttgatg 500
>ISCmi2
Length = 1054
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 17 ccgagcttcttgatg 31
|||||||||||||||
Sbjct: 542 ccgagcttcttgatg 528
>ISAzo3
Length = 1282
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 5 cgcacaccgccaccg 19
|||||||||||||||
Sbjct: 235 cgcacaccgccaccg 221
>ISEcp1
Length = 1656
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 22 cttcttgatgacctt 36
|||||||||||||||
Sbjct: 616 cttcttgatgacctt 602
>ISEc9
Length = 1656
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 22 cttcttgatgacctt 36
|||||||||||||||
Sbjct: 616 cttcttgatgacctt 602
>ISShvi3
Length = 2319
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 100 ggcgttgaacaggt 113
||||||||||||||
Sbjct: 1540 ggcgttgaacaggt 1527
>ISThsp18
Length = 1330
Score = 28.2 bits (14), Expect = 4.7
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 100 ggcgttgaacaggtcggt 117
|||||||||||| |||||
Sbjct: 470 ggcgttgaacagttcggt 453
>ISAzo39
Length = 1277
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 106 gaacaggtcggtct 119
||||||||||||||
Sbjct: 111 gaacaggtcggtct 98
>ISMsm6
Length = 1765
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 25 cttgatgaccttgg 38
||||||||||||||
Sbjct: 1622 cttgatgaccttgg 1609
>ISMmg3
Length = 1189
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 152 acgttggtcggcac 165
||||||||||||||
Sbjct: 773 acgttggtcggcac 760
>ISBlo2
Length = 2455
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 194 tcgatcacgggcag 207
||||||||||||||
Sbjct: 324 tcgatcacgggcag 311
>ISPsy4
Length = 1962
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 33 ccttggtctgggca 46
||||||||||||||
Sbjct: 773 ccttggtctgggca 760
>ISTesp1
Length = 1353
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 157 ggtcggcacgaagg 170
||||||||||||||
Sbjct: 827 ggtcggcacgaagg 814
>ISPa42
Length = 16941
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 114 cggtctcgaggaag 127
||||||||||||||
Sbjct: 8304 cggtctcgaggaag 8317
>ISNGR9
Length = 857
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 111 ggtcggtctcgagg 124
||||||||||||||
Sbjct: 435 ggtcggtctcgagg 448
>ISEfm1
Length = 1041
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 19 gagcttcttgatga 32
||||||||||||||
Sbjct: 447 gagcttcttgatga 434
>ISBfu1
Length = 553
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 17 ccgagcttcttgat 30
||||||||||||||
Sbjct: 545 ccgagcttcttgat 532
>IS19
Length = 1050
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 19 gagcttcttgatga 32
||||||||||||||
Sbjct: 451 gagcttcttgatga 438
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_325_length_241_cov_0.884146_ID_5820
(241 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISCaa3 | IS5 | ISL2 | Candidatus Amoebophilus asiaticus | 36 | 0.019 |
| ISAeme4 | IS4 | ISH8 | Aeromonas media | 32 | 0.30 |
| TnXo19 | Tn3 | Xanthomonas oryzae | 30 | 1.2 | |
| ISMyma8 | IS3 | IS407 | Mycobacterium marinum | 30 | 1.2 |
| ISMch3 | IS3 | IS150 | Methylobacterium chloromethanicum | 30 | 1.2 |
| ISRta4 | IS110 | Ralstonia taiwanensis | 30 | 1.2 | |
| ISBlma5 | IS3 | IS407 | Blastopirellula marina | 30 | 1.2 |
| ISXo14 | IS4 | IS10 | Xanthomonas oryzae | 30 | 1.2 |
| ISXac1 | IS4 | IS10 | Xanthomonas axonopodis | 30 | 1.2 |
| ISXc4 | Tn3 | - | Xanthomonas campestris | 30 | 1.2 |
| ISXaca1 | IS4 | IS10 | Xanthomonas campestris | 30 | 1.2 |
| ISHals1 | IS200/IS605 | IS1341 | Haloferax sp. | 28 | 4.7 |
| ISHbo3 | IS200/IS605 | IS1341 | Halogeometricum borinquense | 28 | 4.7 |
| ISIde2 | IS21 | Ideonella dechloratans | 28 | 4.7 | |
| ISAra2 | ISKra4 | ISAzba1 | Agrobacterium radiobacter | 28 | 4.7 |
| ISAzs29 | Tn3 | Azospirillum sp. | 28 | 4.7 | |
| ISUnCu15 | IS5 | IS903 | Uncultured bacterium | 28 | 4.7 |
| ISRssp4 | IS30 | Roseovarius sp. | 28 | 4.7 | |
| ISAzo13 | ISAzo13 | Azoarcus sp. | 28 | 4.7 | |
| ISAzo20 | IS200/IS605 | IS200 | Azoarcus sp. | 28 | 4.7 |
| ISCARN16 | IS21 | Metagenomic data from CARNOULES | 28 | 4.7 | |
| ISGdi16 | IS1182 | Gluconacetobacter diazotrophicus | 28 | 4.7 | |
| ISAnsp3 | IS66 | Anaeromyxobacter sp. | 28 | 4.7 | |
| ISSlsp1 | IS1380 | Sulfurovum sp | 28 | 4.7 | |
| ISPst7 | IS5 | IS5 | Pseudomonas stutzeri | 28 | 4.7 |
| ISRhosp2 | IS701 | Rhodococcus sp. | 28 | 4.7 | |
| ISCausp1 | IS3 | IS3 | Caulobacter sp. | 28 | 4.7 |
| ISMmg3 | IS4 | IS10 | Magnetospirillum magnetotacticum | 28 | 4.7 |
| ISEc10 | IS21 | Escherichia coli | 28 | 4.7 | |
| ISBlo7 | IS30 | Bifidobacterium longum | 28 | 4.7 | |
| ISAac2 | IS5 | IS427 | Actinobacillus actinomycetemcomitans | 28 | 4.7 |
| IS654 | IS256 | - | Bacillus halodurans | 28 | 4.7 |
>ISCaa3
Length = 911
Score = 36.2 bits (18), Expect = 0.019
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 98 tatcgacaaccagttgcg 115
||||||||||||||||||
Sbjct: 527 tatcgacaaccagttgcg 510
>ISAeme4
Length = 1383
Score = 32.2 bits (16), Expect = 0.30
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 216 ttcatgaaggcgctgg 231
||||||||||||||||
Sbjct: 372 ttcatgaaggcgctgg 387
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 103 acaaccagttgcgc 116
||||||||||||||
Sbjct: 340 acaaccagttgcgc 353
>TnXo19
Length = 18767
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 51 gcgggcggcctgcac 65
|||||||||||||||
Sbjct: 1567 gcgggcggcctgcac 1553
>ISMyma8
Length = 1247
Score = 30.2 bits (15), Expect = 1.2
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 132 cagggcgatccgggttcga 150
|||||||||||||| ||||
Sbjct: 1007 cagggcgatccgggatcga 989
>ISMch3
Length = 1510
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 58 gcctgcacgtgatcg 72
|||||||||||||||
Sbjct: 1054 gcctgcacgtgatcg 1040
>ISRta4
Length = 1915
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 104 caaccagttgcgcgg 118
|||||||||||||||
Sbjct: 977 caaccagttgcgcgg 991
>ISBlma5
Length = 1296
Score = 30.2 bits (15), Expect = 1.2
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 132 cagggcgatccgggttcga 150
||||||||||| |||||||
Sbjct: 993 cagggcgatcctggttcga 975
>ISXo14
Length = 1352
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 169 tggaagacagcctga 183
|||||||||||||||
Sbjct: 1052 tggaagacagcctga 1066
>ISXac1
Length = 1350
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 169 tggaagacagcctga 183
|||||||||||||||
Sbjct: 1051 tggaagacagcctga 1065
>ISXc4
Length = 6938
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 169 tggaagacagcctga 183
|||||||||||||||
Sbjct: 6026 tggaagacagcctga 6040
>ISXaca1
Length = 1350
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 169 tggaagacagcctga 183
|||||||||||||||
Sbjct: 1051 tggaagacagcctga 1065
>ISHals1
Length = 1520
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 144 ggttcgagccgttt 157
||||||||||||||
Sbjct: 679 ggttcgagccgttt 692
>ISHbo3
Length = 1471
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 7 agatcaaggcggat 20
||||||||||||||
Sbjct: 6 agatcaaggcggat 19
>ISIde2
Length = 2529
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 120 cgtgccggtcgtca 133
||||||||||||||
Sbjct: 2266 cgtgccggtcgtca 2253
>ISAra2
Length = 2535
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 190 tcttcgcctccgac 203
||||||||||||||
Sbjct: 1239 tcttcgcctccgac 1226
>ISAzs29
Length = 3897
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 47 cgaagcgggcggcc 60
||||||||||||||
Sbjct: 2880 cgaagcgggcggcc 2867
>ISUnCu15
Length = 1053
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 186 cgcatcttcgcctc 199
||||||||||||||
Sbjct: 866 cgcatcttcgcctc 853
>ISRssp4
Length = 1110
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 135 ggcgatccgggttc 148
||||||||||||||
Sbjct: 707 ggcgatccgggttc 694
>ISAzo13
Length = 1305
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 44 gctcgaagcgggcg 57
||||||||||||||
Sbjct: 594 gctcgaagcgggcg 607
>ISAzo20
Length = 624
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 61 tgcacgtgatcgcc 74
||||||||||||||
Sbjct: 294 tgcacgtgatcgcc 281
>ISCARN16
Length = 2594
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 3 gcgcagatcaaggc 16
||||||||||||||
Sbjct: 367 gcgcagatcaaggc 380
>ISGdi16
Length = 1524
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 216 ttcatgaaggcgct 229
||||||||||||||
Sbjct: 1205 ttcatgaaggcgct 1218
>ISAnsp3
Length = 2518
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 200 cgaccgggtgaaga 213
||||||||||||||
Sbjct: 607 cgaccgggtgaaga 620
>ISSlsp1
Length = 1661
Score = 28.2 bits (14), Expect = 4.7
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 20 ttggcaaaagcgtcacca 37
||||||||||| ||||||
Sbjct: 113 ttggcaaaagcttcacca 96
>ISPst7
Length = 1192
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 106 accagttgcgcggt 119
||||||||||||||
Sbjct: 970 accagttgcgcggt 957
>ISRhosp2
Length = 1361
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 194 cgcctccgaccggg 207
||||||||||||||
Sbjct: 460 cgcctccgaccggg 473
>ISCausp1
Length = 1262
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 132 cagggcgatccggg 145
||||||||||||||
Sbjct: 892 cagggcgatccggg 879
>ISMmg3
Length = 1189
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 167 gctggaagacagcc 180
||||||||||||||
Sbjct: 915 gctggaagacagcc 928
>ISEc10
Length = 2410
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 91 cccgtcgtatcgac 104
||||||||||||||
Sbjct: 1217 cccgtcgtatcgac 1230
>ISBlo7
Length = 1272
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 223 aggcgctgggcatg 236
||||||||||||||
Sbjct: 911 aggcgctgggcatg 924
>ISAac2
Length = 885
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 19 attggcaaaagcgt 32
||||||||||||||
Sbjct: 430 attggcaaaagcgt 443
>IS654
Length = 1384
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 19 attggcaaaagcgt 32
||||||||||||||
Sbjct: 959 attggcaaaagcgt 972
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_326_length_241_cov_1.26829_ID_5822
(241 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISSm4 | ISL3 | Serratia marcescens | 32 | 0.30 | |
| ISThsp9 | Tn3 | Thiomonas sp. | 32 | 0.30 | |
| ISXc4 | Tn3 | - | Xanthomonas campestris | 32 | 0.30 |
| ISSoc14 | IS200/IS605 | IS1341 | Synechococcus sp | 30 | 1.2 |
| ISMva3 | IS1380 | Mycobacterium vanbaalenii | 30 | 1.2 | |
| ISPpu16 | IS1182 | Pseudomonas putida | 30 | 1.2 | |
| ISAzo34 | IS256 | Azoarcus sp. | 30 | 1.2 | |
| ISAzo28 | IS110 | Azoarcus sp. | 30 | 1.2 | |
| ISUnCu3 | IS21 | Uncultured bacterium | 30 | 1.2 | |
| ISBcen22 | IS3 | IS407 | Burkholderia cenocepacia | 30 | 1.2 |
| ISPpu13 | IS66 | Pseudomonas putida | 30 | 1.2 | |
| ISPa43 | Tn3 | Pseudomonas aeruginosa | 28 | 4.7 | |
| ISSdi1 | IS1182 | Streptomyces diastaticus | 28 | 4.7 | |
| ISDisp1 | IS5 | Diaphorobacter sp. | 28 | 4.7 | |
| IS1677 | IS1380 | Corynebacterium glutamicum | 28 | 4.7 | |
| ISPa33 | IS1380 | Pseudomonas aeruginosa | 28 | 4.7 | |
| ISSav5 | IS481 | Streptomyces avermitilis | 28 | 4.7 | |
| ISVsa5 | IS4 | IS10 | Aliivibrio salmonicida | 28 | 4.7 |
| ISRosp4 | IS66 | Roseobacter sp. | 28 | 4.7 | |
| ISMpe1 | IS3 | IS3 | Methylibium petroleiphilum | 28 | 4.7 |
| ISMbov1 | IS30 | Mycoplasma bovis | 28 | 4.7 | |
| ISBlo6 | ISL3 | Bifidobacterium longum | 28 | 4.7 | |
| ISMt2 | IS21 | - | Mycobacterium tuberculosis | 28 | 4.7 |
| ISAav3 | IS5 | - | Acidovorax avenae | 28 | 4.7 |
| IS232 | IS21 | - | Bacillus thuringiensis | 28 | 4.7 |
| IS1600 | IS21 | - | Ralstonia eutropha | 28 | 4.7 |
| IS10R | IS4 | IS10 | Salmonella typhimurium | 28 | 4.7 |
| IS10L | IS4 | IS10 | Salmonella typhimurium | 28 | 4.7 |
>ISSm4
Length = 9109
Score = 32.2 bits (16), Expect = 0.30
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 34 cggtcaggtgccggag 49
||||||||||||||||
Sbjct: 3259 cggtcaggtgccggag 3274
>ISThsp9
Length = 6215
Score = 32.2 bits (16), Expect = 0.30
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 196 ccgcgcacgaacttgc 211
||||||||||||||||
Sbjct: 271 ccgcgcacgaacttgc 286
>ISXc4
Length = 6938
Score = 32.2 bits (16), Expect = 0.30
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 196 ccgcgcacgaacttgc 211
||||||||||||||||
Sbjct: 265 ccgcgcacgaacttgc 280
>ISSoc14
Length = 1370
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 167 cggcggtggaagcgg 181
|||||||||||||||
Sbjct: 745 cggcggtggaagcgg 759
>ISMva3
Length = 1658
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 202 acgaacttgcggcgc 216
|||||||||||||||
Sbjct: 1384 acgaacttgcggcgc 1370
>ISPpu16
Length = 1677
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 218 tggggcgcatgtggc 232
|||||||||||||||
Sbjct: 1574 tggggcgcatgtggc 1560
>ISAzo34
Length = 1439
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 175 gaagcgggatttgtc 189
|||||||||||||||
Sbjct: 599 gaagcgggatttgtc 613
>ISAzo28
Length = 1486
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 56 ggtggtcgtgacgaa 70
|||||||||||||||
Sbjct: 365 ggtggtcgtgacgaa 351
>ISUnCu3
Length = 2596
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 143 cgccgggcagacggt 157
|||||||||||||||
Sbjct: 620 cgccgggcagacggt 634
>ISBcen22
Length = 1202
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 207 cttgcggcgcttggg 221
|||||||||||||||
Sbjct: 631 cttgcggcgcttggg 617
>ISPpu13
Length = 2370
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 202 acgaacttgcggcgc 216
|||||||||||||||
Sbjct: 1458 acgaacttgcggcgc 1444
>ISPa43
Length = 19903
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 95 aaggatcgatttga 108
||||||||||||||
Sbjct: 4323 aaggatcgatttga 4310
>ISSdi1
Length = 1789
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 133 cggatctgttcgcc 146
||||||||||||||
Sbjct: 233 cggatctgttcgcc 246
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 139 tgttcgccgggcag 152
||||||||||||||
Sbjct: 1133 tgttcgccgggcag 1120
>ISDisp1
Length = 1321
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 178 gcgggatttgtcgc 191
||||||||||||||
Sbjct: 706 gcgggatttgtcgc 693
>IS1677
Length = 1688
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 126 tttcgaccggatct 139
||||||||||||||
Sbjct: 381 tttcgaccggatct 394
>ISPa33
Length = 1561
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 134 ggatctgttcgccg 147
||||||||||||||
Sbjct: 1124 ggatctgttcgccg 1137
>ISSav5
Length = 1953
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 127 ttcgaccggatctg 140
||||||||||||||
Sbjct: 778 ttcgaccggatctg 791
>ISVsa5
Length = 1329
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 48 aggtgacgggtggt 61
||||||||||||||
Sbjct: 869 aggtgacgggtggt 856
>ISRosp4
Length = 2709
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 56 ggtggtcgtgacga 69
||||||||||||||
Sbjct: 1455 ggtggtcgtgacga 1468
>ISMpe1
Length = 1295
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 202 acgaacttgcggcg 215
||||||||||||||
Sbjct: 679 acgaacttgcggcg 666
>ISMbov1
Length = 1521
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 205 aacttgcggcgctt 218
||||||||||||||
Sbjct: 34 aacttgcggcgctt 47
>ISBlo6
Length = 1330
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 145 ccgggcagacggtc 158
||||||||||||||
Sbjct: 243 ccgggcagacggtc 230
>ISMt2
Length = 2645
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 161 catcaccggcggtg 174
||||||||||||||
Sbjct: 1284 catcaccggcggtg 1271
>ISAav3
Length = 1321
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 178 gcgggatttgtcgc 191
||||||||||||||
Sbjct: 706 gcgggatttgtcgc 693
>IS232
Length = 2184
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 76 agctatcaacaatt 89
||||||||||||||
Sbjct: 1387 agctatcaacaatt 1400
>IS1600
Length = 2520
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 158 catcatcaccggcg 171
||||||||||||||
Sbjct: 2036 catcatcaccggcg 2049
>IS10R
Length = 1329
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 48 aggtgacgggtggt 61
||||||||||||||
Sbjct: 869 aggtgacgggtggt 856
>IS10L
Length = 1329
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 48 aggtgacgggtggt 61
||||||||||||||
Sbjct: 869 aggtgacgggtggt 856
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_327_length_241_cov_0.731707_ID_5824
(241 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISStma1 | IS481 | Stenotrophomonas maltophilia | 32 | 0.30 | |
| ISBith1 | IS256 | IS1249 | Bifidobacterium thermophilum | 30 | 1.2 |
| ISHti5 | IS1595 | ISH4 | Halorhabdus tiamatea | 28 | 4.7 |
| ISLesp4 | ISKra4 | ISKra4 | Leptolyngbya sp. | 28 | 4.7 |
| ISSpu24 | IS66 | Shewanella putrefaciens | 28 | 4.7 | |
| IS102 | IS5 | IS903 | Escherichia coli | 28 | 4.7 |
>ISStma1
Length = 1023
Score = 32.2 bits (16), Expect = 0.30
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 224 tgggcgcaggccctcg 239
||||||||||||||||
Sbjct: 167 tgggcgcaggccctcg 152
>ISBith1
Length = 1350
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 224 tgggcgcaggccctc 238
|||||||||||||||
Sbjct: 630 tgggcgcaggccctc 616
>ISHti5
Length = 944
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 198 attgatggcgagat 211
||||||||||||||
Sbjct: 746 attgatggcgagat 733
>ISLesp4
Length = 1696
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 192 tggctaattgatgg 205
||||||||||||||
Sbjct: 1128 tggctaattgatgg 1115
>ISSpu24
Length = 2524
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 194 gctaattgatggcg 207
||||||||||||||
Sbjct: 1036 gctaattgatggcg 1023
>IS102
Length = 1057
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 200 tgatggcgagatca 213
||||||||||||||
Sbjct: 246 tgatggcgagatca 233
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_328_length_241_cov_0.670732_ID_5826
(241 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISAar45 | IS3 | IS3 | Arthrobacter arilaitensis | 34 | 0.076 |
| ISSiac4 | ISKra4 | ISKra4 | Singulisphaera acidiphila | 32 | 0.30 |
| ISAzs4 | IS110 | IS1111 | Azospirillum sp. | 32 | 0.30 |
| ISCARN46 | IS3 | IS3 | Metagenomic data from CARNOULES | 32 | 0.30 |
| ISUnCu3 | IS21 | Uncultured bacterium | 32 | 0.30 | |
| ISUnCu7 | ISKra4 | ISAzba1 | Uncultured bacterium | 30 | 1.2 |
| ISNamo16 | IS630 | Natronomonas moolapensis | 30 | 1.2 | |
| ISHvo13 | IS4 | ISH8 | Haloferax volcanii | 30 | 1.2 |
| ISHvo12 | IS4 | ISH8 | Haloferax volcanii | 30 | 1.2 |
| ISSen3 | IS21 | Salmonella enterica | 30 | 1.2 | |
| ISApr8 | IS1380 | alpha proteobacterium | 30 | 1.2 | |
| ISMex41 | IS630 | Methylobacterium extorquens | 30 | 1.2 | |
| ISFsp11 | IS66 | ISBst12 | Frankia sp. | 30 | 1.2 |
| ISAzo4 | IS21 | Azoarcus sp. | 30 | 1.2 | |
| ISPpa5 | IS66 | Paracoccus pantotrophus | 30 | 1.2 | |
| ISBfun2 | IS110 | IS1111 | Burkholderia fungorum | 30 | 1.2 |
| ISMav1 | IS21 | - | Mycobacterium avium | 30 | 1.2 |
| ISH8E | IS4 | ISH8 | Halobacterium sp. | 30 | 1.2 |
| IS1612 | IS21 | - | Mycobacterium avium | 30 | 1.2 |
| TnAs1 | Tn3 | Aeromonas salmonicida | 28 | 4.7 | |
| ISHvo9 | IS110 | IS1111 | Haloferax volcanii | 28 | 4.7 |
| ISBsa1 | IS256 | Blastococcus saxobsidens | 28 | 4.7 | |
| ISAmi2 | IS5 | ISL2 | Actinosynnema mirum | 28 | 4.7 |
| ISMdi2 | ISL3 | Methylobacterium dichloromethanicum | 28 | 4.7 | |
| ISMex5 | IS3 | IS407 | Methylobacterium extorquens | 28 | 4.7 |
| ISMex4 | IS1380 | Methylobacterium extorquens | 28 | 4.7 | |
| ISAzo21 | IS66 | Azoarcus sp. | 28 | 4.7 | |
| ISAzo19 | IS66 | Azoarcus sp. | 28 | 4.7 | |
| ISAzo15 | IS66 | Azoarcus sp. | 28 | 4.7 | |
| ISCARN21 | IS630 | Metagenomic data from CARNOULES | 28 | 4.7 | |
| ISAau4 | Tn3 | Arthrobacter aurescens | 28 | 4.7 | |
| ISMsm4 | ISL3 | Mycobacterium smegmatis | 28 | 4.7 | |
| ISRhsp4 | IS5 | IS427 | Rhodobacter sphaeroides | 28 | 4.7 |
| ISRme15 | IS3 | IS51 | Ralstonia metallidurans | 28 | 4.7 |
| ISRpa1 | IS1595 | ISNwi1 | Rhodopseudomonas palustris | 28 | 4.7 |
| ISH18 | IS110 | IS1111 | Haloarcula marismortui | 28 | 4.7 |
| ISBmu1 | IS21 | Burkholderia multivorans | 28 | 4.7 | |
| ISPlu14 | IS5 | Photorhabdus luminescens | 28 | 4.7 | |
| ISRso7 | IS256 | - | Ralstonia solanacearum | 28 | 4.7 |
| ISAav1 | IS21 | - | Acidovorax avenae | 28 | 4.7 |
| ISSme3 | IS66 | Sinorhizobium medicae | 28 | 4.7 | |
| IS1248B | IS5 | IS427 | Paracoccus denitrificans | 28 | 4.7 |
| IS1248A | IS5 | IS427 | Paracoccus denitrificans | 28 | 4.7 |
>ISAar45
Length = 1280
Score = 34.2 bits (17), Expect = 0.076
Identities = 29/33 (87%)
Strand = Plus / Plus
Query: 209 tcgaaatgcagacccagctgctgcgcaaggccg 241
|||||||| ||| | || |||||||||||||||
Sbjct: 294 tcgaaatggagaacgaggtgctgcgcaaggccg 326
>ISSiac4
Length = 1519
Score = 32.2 bits (16), Expect = 0.30
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 59 tgcgtcggggcgaagacggc 78
||||| ||||||||||||||
Sbjct: 1376 tgcgttggggcgaagacggc 1395
>ISAzs4
Length = 1301
Score = 32.2 bits (16), Expect = 0.30
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 114 cgacgaggccgtgcag 129
||||||||||||||||
Sbjct: 568 cgacgaggccgtgcag 553
>ISCARN46
Length = 1254
Score = 32.2 bits (16), Expect = 0.30
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 20 ttggccgcctcaagct 35
||||||||||||||||
Sbjct: 219 ttggccgcctcaagct 204
>ISUnCu3
Length = 2596
Score = 32.2 bits (16), Expect = 0.30
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 98 gcgcgcccgcgccggc 113
||||||||||||||||
Sbjct: 926 gcgcgcccgcgccggc 911
>ISUnCu7
Length = 2273
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 26 gcctcaagctggtca 40
|||||||||||||||
Sbjct: 947 gcctcaagctggtca 933
>ISNamo16
Length = 1058
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 9 ggtcaacgtgattgg 23
|||||||||||||||
Sbjct: 663 ggtcaacgtgattgg 677
>ISHvo13
Length = 1395
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 96 tggcgcgcccgcgcc 110
|||||||||||||||
Sbjct: 780 tggcgcgcccgcgcc 766
>ISHvo12
Length = 1395
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 96 tggcgcgcccgcgcc 110
|||||||||||||||
Sbjct: 780 tggcgcgcccgcgcc 766
>ISSen3
Length = 1956
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 186 catgatttccctggc 200
|||||||||||||||
Sbjct: 1613 catgatttccctggc 1627
>ISApr8
Length = 1667
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 23 gccgcctcaagctgg 37
|||||||||||||||
Sbjct: 149 gccgcctcaagctgg 163
>ISMex41
Length = 1048
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 225 gctgctgcgcaaggc 239
|||||||||||||||
Sbjct: 909 gctgctgcgcaaggc 923
>ISFsp11
Length = 1836
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 52 gccgagctgcgtcgg 66
|||||||||||||||
Sbjct: 352 gccgagctgcgtcgg 366
>ISAzo4
Length = 2757
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 110 cggccgacgaggccg 124
|||||||||||||||
Sbjct: 407 cggccgacgaggccg 421
>ISPpa5
Length = 2829
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 91 gccggtggcgcgccc 105
|||||||||||||||
Sbjct: 814 gccggtggcgcgccc 800
>ISBfun2
Length = 1125
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 115 gacgaggccgtgcag 129
|||||||||||||||
Sbjct: 575 gacgaggccgtgcag 589
>ISMav1
Length = 2536
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 91 gccggtggcgcgccc 105
|||||||||||||||
Sbjct: 301 gccggtggcgcgccc 315
>ISH8E
Length = 1403
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 96 tggcgcgcccgcgcc 110
|||||||||||||||
Sbjct: 782 tggcgcgcccgcgcc 768
>IS1612
Length = 2532
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 91 gccggtggcgcgccc 105
|||||||||||||||
Sbjct: 300 gccggtggcgcgccc 314
>TnAs1
Length = 6694
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 48 cgaggccgagctgc 61
||||||||||||||
Sbjct: 4789 cgaggccgagctgc 4802
>ISHvo9
Length = 1462
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 218 agacccagctgctg 231
||||||||||||||
Sbjct: 841 agacccagctgctg 854
>ISBsa1
Length = 1464
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 228 gctgcgcaaggccg 241
||||||||||||||
Sbjct: 880 gctgcgcaaggccg 893
>ISAmi2
Length = 942
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 104 ccgcgccggccgac 117
||||||||||||||
Sbjct: 870 ccgcgccggccgac 883
>ISMdi2
Length = 1689
Score = 28.2 bits (14), Expect = 4.7
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 24 ccgcctcaagctggtcaa 41
||||||||||||| ||||
Sbjct: 1547 ccgcctcaagctgatcaa 1564
>ISMex5
Length = 1283
Score = 28.2 bits (14), Expect = 4.7
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 222 ccagctgctgcgcaaggc 239
||||| ||||||||||||
Sbjct: 266 ccagcggctgcgcaaggc 283
>ISMex4
Length = 1615
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 89 ccgccggtggcgcg 102
||||||||||||||
Sbjct: 570 ccgccggtggcgcg 557
>ISAzo21
Length = 2423
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 199 gcccgccagttcga 212
||||||||||||||
Sbjct: 862 gcccgccagttcga 849
>ISAzo19
Length = 2423
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 199 gcccgccagttcga 212
||||||||||||||
Sbjct: 862 gcccgccagttcga 849
>ISAzo15
Length = 2441
Score = 28.2 bits (14), Expect = 4.7
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 98 gcgcgcccgcgccggccg 115
|||| |||||||||||||
Sbjct: 1163 gcgcccccgcgccggccg 1180
>ISCARN21
Length = 1249
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 41 atccgcccgaggcc 54
||||||||||||||
Sbjct: 923 atccgcccgaggcc 936
>ISAau4
Length = 3898
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 102 gcccgcgccggccg 115
||||||||||||||
Sbjct: 2877 gcccgcgccggccg 2864
>ISMsm4
Length = 1458
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 99 cgcgcccgcgccgg 112
||||||||||||||
Sbjct: 428 cgcgcccgcgccgg 415
>ISRhsp4
Length = 840
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 20 ttggccgcctcaag 33
||||||||||||||
Sbjct: 714 ttggccgcctcaag 727
>ISRme15
Length = 1325
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 112 gccgacgaggccgt 125
||||||||||||||
Sbjct: 1269 gccgacgaggccgt 1282
>ISRpa1
Length = 2091
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 3 aaatgcggtcaacg 16
||||||||||||||
Sbjct: 186 aaatgcggtcaacg 173
>ISH18
Length = 1548
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 218 agacccagctgctg 231
||||||||||||||
Sbjct: 840 agacccagctgctg 853
>ISBmu1
Length = 2581
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 90 cgccggtggcgcgc 103
||||||||||||||
Sbjct: 2158 cgccggtggcgcgc 2145
>ISPlu14
Length = 1582
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 134 ccggcggctatctg 147
||||||||||||||
Sbjct: 1115 ccggcggctatctg 1128
>ISRso7
Length = 1344
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 85 cgcaccgccggtgg 98
||||||||||||||
Sbjct: 1078 cgcaccgccggtgg 1065
>ISAav1
Length = 2532
Score = 28.2 bits (14), Expect = 4.7
Identities = 23/26 (88%)
Strand = Plus / Plus
Query: 32 agctggtcaatccgcccgaggccgag 57
|||||||||||| || |||||||||
Sbjct: 2045 agctggtcaatctgctggaggccgag 2070
>ISSme3
Length = 3149
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 100 gcgcccgcgccggc 113
||||||||||||||
Sbjct: 1431 gcgcccgcgccggc 1444
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 88 accgccggtggcgc 101
||||||||||||||
Sbjct: 1786 accgccggtggcgc 1773
>IS1248B
Length = 830
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 109 ccggccgacgaggc 122
||||||||||||||
Sbjct: 419 ccggccgacgaggc 406
>IS1248A
Length = 832
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 109 ccggccgacgaggc 122
||||||||||||||
Sbjct: 420 ccggccgacgaggc 407
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_329_length_241_cov_0.72561_ID_5828
(241 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| TnAs3 | Tn3 | Aeromonas salmonicida | 32 | 0.30 | |
| ISPko3 | IS5 | IS903 | Paracoccus kondratievae | 30 | 1.2 |
| ISPpa7 | IS66 | Paracoccus pantotrophus | 30 | 1.2 | |
| ISMafe1 | IS5 | IS5 | Mariprofundus ferrooxydans | 30 | 1.2 |
| ISStma13 | IS3 | IS407 | Stenotrophomonas maltophilia | 30 | 1.2 |
| ISThsp9 | Tn3 | Thiomonas sp. | 30 | 1.2 | |
| ISRfsp1 | IS66 | ISBst12 | Roseiflexus sp. | 30 | 1.2 |
| ISTth8 | IS701 | Thermus thermophilus | 30 | 1.2 | |
| ISGur15 | IS21 | Geobacter uraniumreducens | 30 | 1.2 | |
| ISSlgl1 | IS256 | IS1249 | Slackia heliotrinireducens | 28 | 4.7 |
| ISApr14 | IS256 | alpha proteobacterium | 28 | 4.7 | |
| ISPa43 | Tn3 | Pseudomonas aeruginosa | 28 | 4.7 | |
| ISNpu1 | IS1182 | Nostoc punctiforme | 28 | 4.7 | |
| ISPme2 | IS5 | IS427 | Paracoccus methylutens | 28 | 4.7 |
| ISCysp18 | IS5 | IS5 | Cyanothece sp. | 28 | 4.7 |
| ISCysp17 | IS5 | IS5 | Cyanothece sp. | 28 | 4.7 |
| ISRhru6 | IS5 | IS1031 | Rhodospirillum rubrum | 28 | 4.7 |
| ISMdi7 | IS21 | Methylobacterium dichloromethanicum | 28 | 4.7 | |
| ISPmi1 | IS3 | IS51 | Proteus mirabilis | 28 | 4.7 |
| ISMex8 | IS21 | Methylobacterium extorquens | 28 | 4.7 | |
| ISAisp4 | IS110 | Acidovorax sp. | 28 | 4.7 | |
| ISSag3 | IS30 | Streptococcus agalactiae | 28 | 4.7 | |
| ISGme9 | IS481 | Geobacter metallireducens | 28 | 4.7 | |
| ISPla1 | IS1595 | ISPna2 | Parvibaculum lavamentivorans | 28 | 4.7 |
| ISXca2 | IS3 | IS407 | Xanthomonas campestris | 28 | 4.7 |
| ISPa12 | IS4 | ISH8 | Pseudomonas aeruginosa | 28 | 4.7 |
| ISXc4 | Tn3 | - | Xanthomonas campestris | 28 | 4.7 |
| ISRm5 | IS256 | - | Rhizobium meliloti | 28 | 4.7 |
| IS1491 | IS21 | - | Pseudomonas alcaligenes | 28 | 4.7 |
>TnAs3
Length = 18735
Score = 32.2 bits (16), Expect = 0.30
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 29 gccgcgccccgagggc 44
||||||||||||||||
Sbjct: 11964 gccgcgccccgagggc 11949
>ISPko3
Length = 1017
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 57 gaaagcctgccgcag 71
|||||||||||||||
Sbjct: 295 gaaagcctgccgcag 309
>ISPpa7
Length = 2731
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 176 gcccgcttcgccagc 190
|||||||||||||||
Sbjct: 2446 gcccgcttcgccagc 2460
>ISMafe1
Length = 1745
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 19 acgaagagccgccgc 33
|||||||||||||||
Sbjct: 1043 acgaagagccgccgc 1057
>ISStma13
Length = 1216
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 99 gacgtcatcaaggat 113
|||||||||||||||
Sbjct: 299 gacgtcatcaaggat 313
>ISThsp9
Length = 6215
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 176 gcccgcttcgccagc 190
|||||||||||||||
Sbjct: 2608 gcccgcttcgccagc 2622
>ISRfsp1
Length = 1503
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 141 ccgtggctgagcaac 155
|||||||||||||||
Sbjct: 42 ccgtggctgagcaac 56
>ISTth8
Length = 1016
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 99 gacgtcatcaaggat 113
|||||||||||||||
Sbjct: 281 gacgtcatcaaggat 267
>ISGur15
Length = 2390
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 11 ggcgctgaacgaaga 25
|||||||||||||||
Sbjct: 873 ggcgctgaacgaaga 859
>ISSlgl1
Length = 1341
Score = 28.2 bits (14), Expect = 4.7
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 120 cgcgctcatgtggccgat 137
||||||||||| ||||||
Sbjct: 575 cgcgctcatgtcgccgat 592
>ISApr14
Length = 1316
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 8 cgaggcgctgaacg 21
||||||||||||||
Sbjct: 1077 cgaggcgctgaacg 1090
>ISPa43
Length = 19903
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 213 ggcgcgagcccaac 226
||||||||||||||
Sbjct: 16283 ggcgcgagcccaac 16270
>ISNpu1
Length = 1803
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 116 cattcgcgctcatg 129
||||||||||||||
Sbjct: 1584 cattcgcgctcatg 1597
>ISPme2
Length = 851
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 9 gaggcgctgaacga 22
||||||||||||||
Sbjct: 311 gaggcgctgaacga 324
>ISCysp18
Length = 1702
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 221 cccaacgattttct 234
||||||||||||||
Sbjct: 235 cccaacgattttct 222
>ISCysp17
Length = 1701
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 221 cccaacgattttct 234
||||||||||||||
Sbjct: 234 cccaacgattttct 221
>ISRhru6
Length = 941
Score = 28.2 bits (14), Expect = 4.7
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 2 catccgcgaggcgctgaa 19
||||||||||| ||||||
Sbjct: 217 catccgcgaggtgctgaa 234
>ISMdi7
Length = 2568
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 8 cgaggcgctgaacg 21
||||||||||||||
Sbjct: 887 cgaggcgctgaacg 900
>ISPmi1
Length = 1306
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 109 aggatttcattcgc 122
||||||||||||||
Sbjct: 316 aggatttcattcgc 303
>ISMex8
Length = 2597
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 8 cgaggcgctgaacg 21
||||||||||||||
Sbjct: 888 cgaggcgctgaacg 901
>ISAisp4
Length = 1614
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 8 cgaggcgctgaacg 21
||||||||||||||
Sbjct: 1443 cgaggcgctgaacg 1456
>ISSag3
Length = 1164
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 45 tttgcccatcttga 58
||||||||||||||
Sbjct: 180 tttgcccatcttga 167
>ISGme9
Length = 1353
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 165 cgttctgggatgcc 178
||||||||||||||
Sbjct: 731 cgttctgggatgcc 718
>ISPla1
Length = 1132
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 61 gcctgccgcagcgc 74
||||||||||||||
Sbjct: 549 gcctgccgcagcgc 536
>ISXca2
Length = 1200
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 87 gcggttgatgttga 100
||||||||||||||
Sbjct: 1157 gcggttgatgttga 1144
>ISPa12
Length = 1387
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 172 ggatgcccgcttcg 185
||||||||||||||
Sbjct: 740 ggatgcccgcttcg 753
>ISXc4
Length = 6938
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 176 gcccgcttcgccag 189
||||||||||||||
Sbjct: 2613 gcccgcttcgccag 2626
>ISRm5
Length = 1340
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 92 tgatgttgacgtca 105
||||||||||||||
Sbjct: 57 tgatgttgacgtca 70
>IS1491
Length = 2481
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 10 aggcgctgaacgaa 23
||||||||||||||
Sbjct: 1725 aggcgctgaacgaa 1738
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_330_length_240_cov_0.889571_ID_5830
(240 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISPa43 | Tn3 | Pseudomonas aeruginosa | 36 | 0.019 | |
| ISNisp6 | IS66 | Nitrobacter sp. | 32 | 0.30 | |
| ISAeme12 | IS4 | IS4 | Aeromonas media | 30 | 1.2 |
| ISMva3 | IS1380 | Mycobacterium vanbaalenii | 30 | 1.2 | |
| ISCARN21 | IS630 | Metagenomic data from CARNOULES | 30 | 1.2 | |
| ISAli3 | IS630 | Azospirillum lipoferum | 30 | 1.2 | |
| TnAs3 | Tn3 | Aeromonas salmonicida | 28 | 4.7 | |
| ISUnCu7 | ISKra4 | ISAzba1 | Uncultured bacterium | 28 | 4.7 |
| ISRel8 | IS66 | Rhizobium etli | 28 | 4.7 | |
| ISShes11 | Tn3 | Shewanella sp. | 28 | 4.7 | |
| ISMno14 | IS110 | IS1111 | Methylobacterium nodulans | 28 | 4.7 |
| ISRssp9 | IS1380 | Roseovarius sp. | 28 | 4.7 | |
| ISMrsp6 | IS1380 | Marinobacter sp. | 28 | 4.7 | |
| ISThsp11 | IS3 | IS3 | Thiomonas sp. | 28 | 4.7 |
| ISThsp3 | IS66 | Thiomonas sp. | 28 | 4.7 | |
| ISSba19 | IS110 | IS1111 | Shewanella baltica | 28 | 4.7 |
| ISAli14 | ISAs1 | Azospirillum lipoferum | 28 | 4.7 | |
| ISAau4 | Tn3 | Arthrobacter aurescens | 28 | 4.7 | |
| ISRme12 | IS3 | IS150 | Ralstonia metallidurans | 28 | 4.7 |
| ISBvi1 | IS4 | IS4 | Burkholderia vietnamiensis | 28 | 4.7 |
| ISFsp6 | IS4 | IS4 | Frankia sp. | 28 | 4.7 |
| ISRso1 | IS5 | - | Ralstonia solanacearum | 28 | 4.7 |
| IS476 | IS3 | IS407 | Xanthomonas campestris | 28 | 4.7 |
| IS1313 | IS66 | - | Agrobacterium tumefaciens | 28 | 4.7 |
>ISPa43
Length = 19903
Score = 36.2 bits (18), Expect = 0.019
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 98 atgcggtggcgcgactgg 115
||||||||||||||||||
Sbjct: 9965 atgcggtggcgcgactgg 9948
>ISNisp6
Length = 2489
Score = 32.2 bits (16), Expect = 0.30
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 8 ctggcgtcggcactgcggcc 27
||||||||||||| ||||||
Sbjct: 477 ctggcgtcggcaccgcggcc 458
>ISAeme12
Length = 1426
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 69 tggtgctggccgagc 83
|||||||||||||||
Sbjct: 647 tggtgctggccgagc 661
>ISMva3
Length = 1658
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 188 cacggcgctgttgcc 202
|||||||||||||||
Sbjct: 845 cacggcgctgttgcc 831
>ISCARN21
Length = 1249
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 99 tgcggtggcgcgact 113
|||||||||||||||
Sbjct: 880 tgcggtggcgcgact 866
>ISAli3
Length = 1167
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 69 tggtgctggccgagc 83
|||||||||||||||
Sbjct: 466 tggtgctggccgagc 480
>TnAs3
Length = 18735
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 148 cgcgctgacgctcg 161
||||||||||||||
Sbjct: 15554 cgcgctgacgctcg 15541
>ISUnCu7
Length = 2273
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 189 acggcgctgttgcc 202
||||||||||||||
Sbjct: 1038 acggcgctgttgcc 1051
>ISRel8
Length = 3226
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 105 ggcgcgactggctt 118
||||||||||||||
Sbjct: 374 ggcgcgactggctt 361
>ISShes11
Length = 7669
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 148 cgcgctgacgctcg 161
||||||||||||||
Sbjct: 4560 cgcgctgacgctcg 4547
>ISMno14
Length = 1428
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 45 agcgcgccgccgtg 58
||||||||||||||
Sbjct: 1069 agcgcgccgccgtg 1082
>ISRssp9
Length = 1716
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 126 tggaggcgcccgca 139
||||||||||||||
Sbjct: 1463 tggaggcgcccgca 1450
>ISMrsp6
Length = 1655
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 159 tcgaggccttgcct 172
||||||||||||||
Sbjct: 1404 tcgaggccttgcct 1417
>ISThsp11
Length = 1814
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 29 ttgggcgtgagccc 42
||||||||||||||
Sbjct: 713 ttgggcgtgagccc 726
>ISThsp3
Length = 2455
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 157 gctcgaggccttgc 170
||||||||||||||
Sbjct: 2018 gctcgaggccttgc 2031
>ISSba19
Length = 1373
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 93 cgcgcatgcggtgg 106
||||||||||||||
Sbjct: 466 cgcgcatgcggtgg 453
>ISAli14
Length = 1267
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 66 gcctggtgctggcc 79
||||||||||||||
Sbjct: 537 gcctggtgctggcc 550
>ISAau4
Length = 3898
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 156 cgctcgaggccttg 169
||||||||||||||
Sbjct: 1810 cgctcgaggccttg 1823
>ISRme12
Length = 1454
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 70 ggtgctggccgagc 83
||||||||||||||
Sbjct: 1169 ggtgctggccgagc 1182
>ISBvi1
Length = 1455
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 68 ctggtgctggccga 81
||||||||||||||
Sbjct: 705 ctggtgctggccga 718
>ISFsp6
Length = 1472
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 68 ctggtgctggccga 81
||||||||||||||
Sbjct: 693 ctggtgctggccga 706
>ISRso1
Length = 884
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 47 cgcgccgccgtgcg 60
||||||||||||||
Sbjct: 155 cgcgccgccgtgcg 168
>IS476
Length = 1226
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 7 gctggcgtcggcac 20
||||||||||||||
Sbjct: 458 gctggcgtcggcac 445
>IS1313
Length = 2547
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 184 agatcacggcgctg 197
||||||||||||||
Sbjct: 2330 agatcacggcgctg 2317
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_331_length_240_cov_0.895706_ID_5832
(240 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISCmi2 | IS481 | Clavibacter michiganensis | 38 | 0.005 | |
| IS2001 | ISL3 | - | Bifidobacterium lactis | 30 | 1.2 |
| ISNamo25 | IS200/IS605 | IS1341 | Natronomonas moolapensis | 28 | 4.7 |
| ISPa54 | IS5 | IS5 | Pseudomonas aeruginosa | 28 | 4.7 |
| ISRba10 | IS256 | Rhodopirellula baltica | 28 | 4.7 | |
| ISAfe17 | IS3 | IS150 | Acidithiobacillus ferrivorans | 28 | 4.7 |
| ISAzs5 | ISAs1 | Azospirillum sp. | 28 | 4.7 | |
| ISShes11 | Tn3 | Shewanella sp. | 28 | 4.7 | |
| ISMtsp5 | IS3 | IS2 | Methylobacterium sp. | 28 | 4.7 |
| ISPfr1 | ISL3 | Propionibacterium freudenreichii | 28 | 4.7 | |
| ISAau3 | IS5 | IS5 | Arthrobacter aurescens | 28 | 4.7 |
| ISAar39 | ISL3 | Arthrobacter arilaitensis | 28 | 4.7 | |
| ISMex23 | IS200/IS605 | IS1341 | Methylobacterium extorquens | 28 | 4.7 |
| ISGdi16 | IS1182 | Gluconacetobacter diazotrophicus | 28 | 4.7 | |
| ISBvu4 | IS66 | Bacteroides vulgatus | 28 | 4.7 | |
| ISPre1 | IS5 | IS5 | Pseudomonas resinovorans | 28 | 4.7 |
| ISPst7 | IS5 | IS5 | Pseudomonas stutzeri | 28 | 4.7 |
| ISPa26 | IS5 | IS5 | Pseudomonas aeruginosa | 28 | 4.7 |
| ISSusp2 | IS3 | IS407 | Sulfitobacter sp. | 28 | 4.7 |
| ISMaq1 | IS3 | IS407 | Marinobacter aquaeolei | 28 | 4.7 |
| ISEc8 | IS66 | Escherichia coli | 28 | 4.7 | |
| ISSod2 | IS3 | IS407 | Shewanella oneidensis | 28 | 4.7 |
| ISRso18 | IS5 | IS5 | Ralstonia solanacearum | 28 | 4.7 |
| ISEhe4 | IS3 | IS407 | Erwinia herbicola | 28 | 4.7 |
| ISAav1 | IS21 | - | Acidovorax avenae | 28 | 4.7 |
| IS2000 | IS5 | IS5 | Pseudomonas aeruginosa | 28 | 4.7 |
| IS1327 | IS6 | - | Erwinia herbicola | 28 | 4.7 |
>ISCmi2
Length = 1054
Score = 38.2 bits (19), Expect = 0.005
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 204 cgatggggatgggcgtaagccca 226
|||| ||||||||||||||||||
Sbjct: 929 cgatagggatgggcgtaagccca 907
>IS2001
Length = 1406
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 19 gcggggtcaggtcga 33
|||||||||||||||
Sbjct: 659 gcggggtcaggtcga 645
>ISNamo25
Length = 1529
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 77 gcacccaaagcggt 90
||||||||||||||
Sbjct: 1300 gcacccaaagcggt 1287
>ISPa54
Length = 1159
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 39 tggaagaggcgctg 52
||||||||||||||
Sbjct: 291 tggaagaggcgctg 304
>ISRba10
Length = 1449
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 31 cgaaaacctggaag 44
||||||||||||||
Sbjct: 715 cgaaaacctggaag 728
>ISAfe17
Length = 1334
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 38 ctggaagaggcgct 51
||||||||||||||
Sbjct: 858 ctggaagaggcgct 871
>ISAzs5
Length = 1333
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 105 gccgttcgcgacgc 118
||||||||||||||
Sbjct: 674 gccgttcgcgacgc 687
>ISShes11
Length = 7669
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 20 cggggtcaggtcga 33
||||||||||||||
Sbjct: 1465 cggggtcaggtcga 1452
>ISMtsp5
Length = 1347
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 184 acaccgatttccag 197
||||||||||||||
Sbjct: 1325 acaccgatttccag 1312
>ISPfr1
Length = 1427
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 20 cggggtcaggtcga 33
||||||||||||||
Sbjct: 680 cggggtcaggtcga 667
>ISAau3
Length = 1205
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 39 tggaagaggcgctg 52
||||||||||||||
Sbjct: 289 tggaagaggcgctg 302
>ISAar39
Length = 1433
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 20 cggggtcaggtcga 33
||||||||||||||
Sbjct: 686 cggggtcaggtcga 673
>ISMex23
Length = 1390
Score = 28.2 bits (14), Expect = 4.7
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 16 gaagcggggtcaggtcga 33
||||| ||||||||||||
Sbjct: 296 gaagccgggtcaggtcga 279
>ISGdi16
Length = 1524
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 54 tgtgccagctggcc 67
||||||||||||||
Sbjct: 135 tgtgccagctggcc 148
>ISBvu4
Length = 2371
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 59 cagctggccggcat 72
||||||||||||||
Sbjct: 916 cagctggccggcat 903
>ISPre1
Length = 1192
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 39 tggaagaggcgctg 52
||||||||||||||
Sbjct: 292 tggaagaggcgctg 305
>ISPst7
Length = 1192
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 39 tggaagaggcgctg 52
||||||||||||||
Sbjct: 292 tggaagaggcgctg 305
>ISPa26
Length = 1193
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 39 tggaagaggcgctg 52
||||||||||||||
Sbjct: 900 tggaagaggcgctg 887
>ISSusp2
Length = 1202
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 170 tccatgccgccaaa 183
||||||||||||||
Sbjct: 220 tccatgccgccaaa 207
>ISMaq1
Length = 1194
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 170 tccatgccgccaaa 183
||||||||||||||
Sbjct: 216 tccatgccgccaaa 203
>ISEc8
Length = 2442
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 38 ctggaagaggcgct 51
||||||||||||||
Sbjct: 1554 ctggaagaggcgct 1567
>ISSod2
Length = 1186
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 170 tccatgccgccaaa 183
||||||||||||||
Sbjct: 217 tccatgccgccaaa 204
>ISRso18
Length = 1188
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 39 tggaagaggcgctg 52
||||||||||||||
Sbjct: 905 tggaagaggcgctg 892
>ISEhe4
Length = 1221
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 170 tccatgccgccaaa 183
||||||||||||||
Sbjct: 214 tccatgccgccaaa 201
>ISAav1
Length = 2532
Score = 28.2 bits (14), Expect = 4.7
Identities = 23/26 (88%)
Strand = Plus / Plus
Query: 39 tggaagaggcgctggtgtgccagctg 64
|||| |||||||||||| | ||||||
Sbjct: 1877 tggacgaggcgctggtgcgtcagctg 1902
>IS2000
Length = 1186
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 39 tggaagaggcgctg 52
||||||||||||||
Sbjct: 313 tggaagaggcgctg 326
>IS1327
Length = 810
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 62 ctggccggcattga 75
||||||||||||||
Sbjct: 654 ctggccggcattga 667
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_332_length_240_cov_1.33129_ID_5834
(240 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISPa36 | IS21 | Pseudomonas aeruginosa | 32 | 0.30 | |
| ISThsp2 | IS21 | Thiomonas sp. | 32 | 0.30 | |
| ISAcma28 | IS630 | Acaryochloris marina | 28 | 4.7 | |
| IS30H | IS30 | - | Escherichia hermannii | 28 | 4.7 |
| IS1296 | IS3 | IS150 | Mycoplasma mycoides | 28 | 4.7 |
>ISPa36
Length = 2468
Score = 32.2 bits (16), Expect = 0.30
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 144 gatccagcggatgcatttcc 163
||||| ||||||||||||||
Sbjct: 134 gatccggcggatgcatttcc 153
>ISThsp2
Length = 2644
Score = 32.2 bits (16), Expect = 0.30
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 144 gatccagcggatgcatttcc 163
||||| ||||||||||||||
Sbjct: 133 gatccggcggatgcatttcc 152
>ISAcma28
Length = 1130
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 191 cgataatgcacggt 204
||||||||||||||
Sbjct: 468 cgataatgcacggt 455
>IS30H
Length = 1221
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 40 ctcttacagataaa 53
||||||||||||||
Sbjct: 883 ctcttacagataaa 896
>IS1296
Length = 1485
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 47 agataaagataaag 60
||||||||||||||
Sbjct: 706 agataaagataaag 719
[blastall] WARNING: NODE_437_length_107_cov_1.96667_ID_6042: Could not
calculate ungapped Karlin-Altschul parameters due to an invalid query
sequence or its translation. Please verify the query sequence(s) and/or
filtering options
[blastall] WARNING: NODE_442_length_81_cov_39.5_ID_6052: Could not
calculate ungapped Karlin-Altschul parameters due to an invalid query
sequence or its translation. Please verify the query sequence(s) and/or
filtering options
[blastall] WARNING: NODE_443_length_78_cov_4297_ID_6054: Could not
calculate ungapped Karlin-Altschul parameters due to an invalid query
sequence or its translation. Please verify the query sequence(s) and/or
filtering options
[blastall] WARNING: NODE_444_length_78_cov_249_ID_6056: Could not
calculate ungapped Karlin-Altschul parameters due to an invalid query
sequence or its translation. Please verify the query sequence(s) and/or
filtering options
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_333_length_240_cov_0.883436_ID_5836
(240 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISHme2 | IS4 | ISH8 | Haloferax mediterranei | 32 | 0.30 |
| ISRel19 | IS66 | Rhizobium etli | 32 | 0.30 | |
| ISAar2 | IS110 | Arthrobacter arilaitensis | 32 | 0.30 | |
| ISH8D | IS4 | ISH8 | Halobacterium sp. | 32 | 0.30 |
| ISH8B | IS4 | ISH8 | Halobacterium sp | 32 | 0.30 |
| ISH8A | IS4 | ISH8 | Halobacterium sp. | 32 | 0.30 |
| ISH8 | IS4 | ISH8 | Halobacterium salinarum | 32 | 0.30 |
| ISH26-1 | IS4 | ISH8 | Halobacterium salinarum | 32 | 0.30 |
| ISH26 | IS4 | ISH8 | Halobacterium salinarum | 32 | 0.30 |
| ISNamo26 | IS200/IS605 | IS1341 | Natronomonas moolapensis | 30 | 1.2 |
| ISNamo9 | IS6 | Natronomonas moolapensis | 30 | 1.2 | |
| ISNha5 | IS1595 | ISNha5 | Nitrobacter hamburgensis | 30 | 1.2 |
| ISSav2 | IS701 | Streptomyces avermitilis | 30 | 1.2 | |
| IS1301 | IS5 | IS427 | Neisseria meningitidis | 30 | 1.2 |
| ISPa53 | IS110 | IS1111 | Pseudomonas aeruginosa | 28 | 4.7 |
| IS3507 | IS256 | IS1249 | Corynebacterium jeikeium | 28 | 4.7 |
| ISRle10 | ISNCY | ISDol1 | Rhizobium leguminosarum | 28 | 4.7 |
| ISPfl3 | IS1182 | Pseudomonas fluorescens | 28 | 4.7 | |
| ISRce1 | ISAs1 | Rhodospirillum centenum | 28 | 4.7 | |
| ISApr7 | IS1595 | ISNwi1 | Alpha proteobacterium | 28 | 4.7 |
| ISTth8 | IS701 | Thermus thermophilus | 28 | 4.7 | |
| ISPst6 | IS110 | IS1111 | Pseudomonas stutzeri | 28 | 4.7 |
| ISArch13 | ISL3 | Uncultured methanogenic archaeon | 28 | 4.7 | |
| ISGur2 | IS1595 | IS1595 | Geobacter uraniumreducens | 28 | 4.7 |
>ISHme2
Length = 1403
Score = 32.2 bits (16), Expect = 0.30
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 219 accgttccatcagcga 234
||||||||||||||||
Sbjct: 462 accgttccatcagcga 447
>ISRel19
Length = 2798
Score = 32.2 bits (16), Expect = 0.30
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 65 cccggcctgttctgga 80
||||||||||||||||
Sbjct: 2043 cccggcctgttctgga 2058
>ISAar2
Length = 1473
Score = 32.2 bits (16), Expect = 0.30
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 115 cggcactggcgaaggt 130
||||||||||||||||
Sbjct: 1154 cggcactggcgaaggt 1139
>ISH8D
Length = 1402
Score = 32.2 bits (16), Expect = 0.30
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 219 accgttccatcagcga 234
||||||||||||||||
Sbjct: 461 accgttccatcagcga 446
>ISH8B
Length = 1403
Score = 32.2 bits (16), Expect = 0.30
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 219 accgttccatcagcga 234
||||||||||||||||
Sbjct: 462 accgttccatcagcga 447
>ISH8A
Length = 1402
Score = 32.2 bits (16), Expect = 0.30
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 219 accgttccatcagcga 234
||||||||||||||||
Sbjct: 461 accgttccatcagcga 446
>ISH8
Length = 1402
Score = 32.2 bits (16), Expect = 0.30
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 219 accgttccatcagcga 234
||||||||||||||||
Sbjct: 461 accgttccatcagcga 446
>ISH26-1
Length = 1705
Score = 32.2 bits (16), Expect = 0.30
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 219 accgttccatcagcga 234
||||||||||||||||
Sbjct: 928 accgttccatcagcga 943
>ISH26
Length = 1384
Score = 32.2 bits (16), Expect = 0.30
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 219 accgttccatcagcga 234
||||||||||||||||
Sbjct: 457 accgttccatcagcga 442
>ISNamo26
Length = 1689
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 8 aaggacgagcgttcc 22
|||||||||||||||
Sbjct: 35 aaggacgagcgttcc 49
>ISNamo9
Length = 696
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 211 ctcgatctaccgttc 225
|||||||||||||||
Sbjct: 222 ctcgatctaccgttc 236
>ISNha5
Length = 3904
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 45 acttcggcggttacg 59
|||||||||||||||
Sbjct: 1807 acttcggcggttacg 1821
>ISSav2
Length = 1938
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 92 gtctacggcgacaac 106
|||||||||||||||
Sbjct: 1239 gtctacggcgacaac 1253
>IS1301
Length = 842
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 77 tggaaaaccgcttat 91
|||||||||||||||
Sbjct: 246 tggaaaaccgcttat 260
>ISPa53
Length = 1381
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 66 ccggcctgttctgg 79
||||||||||||||
Sbjct: 1304 ccggcctgttctgg 1291
>IS3507
Length = 1388
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 213 cgatctaccgttcc 226
||||||||||||||
Sbjct: 842 cgatctaccgttcc 855
>ISRle10
Length = 1665
Score = 28.2 bits (14), Expect = 4.7
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 21 cctggcaggcgagctatg 38
|||||| |||||||||||
Sbjct: 850 cctggccggcgagctatg 867
>ISPfl3
Length = 1585
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 115 cggcactggcgaag 128
||||||||||||||
Sbjct: 673 cggcactggcgaag 686
>ISRce1
Length = 1267
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 57 acggcgttcccggc 70
||||||||||||||
Sbjct: 315 acggcgttcccggc 328
>ISApr7
Length = 3923
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 172 gagcggcccggcaa 185
||||||||||||||
Sbjct: 2926 gagcggcccggcaa 2913
>ISTth8
Length = 1016
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 112 caccggcactggcg 125
||||||||||||||
Sbjct: 825 caccggcactggcg 838
>ISPst6
Length = 1371
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 66 ccggcctgttctgg 79
||||||||||||||
Sbjct: 1296 ccggcctgttctgg 1283
>ISArch13
Length = 1313
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 179 ccggcaaaagatct 192
||||||||||||||
Sbjct: 344 ccggcaaaagatct 331
>ISGur2
Length = 1057
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 191 ctgtcgctgaagct 204
||||||||||||||
Sbjct: 723 ctgtcgctgaagct 710
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_334_length_240_cov_0.889571_ID_5838
(240 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISPa60 | ISAs1 | Pseudomonas aeruginosa | 38 | 0.005 | |
| ISMtsp7 | IS110 | IS1111 | Methylobacterium sp. | 32 | 0.30 |
| ISBth18 | ISNCY | Bacillus thuringiensis | 30 | 1.2 | |
| ISKra1 | IS5 | IS427 | Ktedonobacter racemifer | 30 | 1.2 |
| ISCARN34 | IS1380 | Metagenomic data from CARNOULES | 30 | 1.2 | |
| ISAzo4 | IS21 | Azoarcus sp. | 30 | 1.2 | |
| ISAli15 | IS66 | Azospirillum lipoferum | 30 | 1.2 | |
| ISBlo6 | ISL3 | Bifidobacterium longum | 30 | 1.2 | |
| ISAe1 | ISL3 | - | Ralstonia eutropha | 30 | 1.2 |
| ISHla11 | ISH3 | Halorubrum lacusprofundi | 28 | 4.7 | |
| ISNha9 | IS256 | Nitrobacter hamburgensis | 28 | 4.7 | |
| ISAzs14 | IS630 | Azospirillum sp. | 28 | 4.7 | |
| ISAzs1 | IS701 | Azospirillum sp. | 28 | 4.7 | |
| ISMtsp13 | IS256 | Methylobacterium sp. | 28 | 4.7 | |
| ISAar36 | IS21 | Arthrobacter arilaitensis | 28 | 4.7 | |
| ISAar19 | ISL3 | Arthrobacter arilaitensis | 28 | 4.7 | |
| ISMex24 | ISL3 | Methylobacterium extorquens | 28 | 4.7 | |
| ISStma4 | IS110 | Stenotrophomonas maltophilia | 28 | 4.7 | |
| ISFpe1 | IS66 | Fulvimarina pelagi | 28 | 4.7 | |
| ISShes10 | IS30 | Shewanella sp. | 28 | 4.7 | |
| ISUnCu4 | IS30 | Plasmid QKH54 | 28 | 4.7 | |
| ISRsp3 | IS21 | Rhizobium sp. | 28 | 4.7 | |
| ISRpa3 | IS481 | Rhodopseudomonas palustris | 28 | 4.7 | |
| ISSfl11 | IS3 | IS3 | Shigella flexneri | 28 | 4.7 |
| ISLve1 | IS3 | IS3 | Loktanella vestfoldensis | 28 | 4.7 |
| ISBvi3 | IS3 | IS3 | Burkholderia vietnamiensis | 28 | 4.7 |
| ISMpa1 | IS110 | Mycobacterium avium | 28 | 4.7 | |
| ISBcen1 | IS110 | IS1111 | Burkholderia cenocepacia | 28 | 4.7 |
| IS986 | IS3 | IS51 | Mycobacterium tuberculosis | 28 | 4.7 |
| IS869 | IS5 | IS427 | Agrobacterium tumefaciens | 28 | 4.7 |
| IS1071 | Tn3 | - | Alcaligenes sp | 28 | 4.7 |
| IS1016V4 | IS1595 | IS1016 | Haemophilus influenzae | 28 | 4.7 |
>ISPa60
Length = 1228
Score = 38.2 bits (19), Expect = 0.005
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 207 tccagccgctgctcagccc 225
|||||||||||||||||||
Sbjct: 257 tccagccgctgctcagccc 239
>ISMtsp7
Length = 1316
Score = 32.2 bits (16), Expect = 0.30
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 225 ccatcggcatcgacgc 240
||||||||||||||||
Sbjct: 130 ccatcggcatcgacgc 115
>ISBth18
Length = 996
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 77 cgccatttcgtgaat 91
|||||||||||||||
Sbjct: 769 cgccatttcgtgaat 755
>ISKra1
Length = 1391
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 205 gctccagccgctgct 219
|||||||||||||||
Sbjct: 128 gctccagccgctgct 142
>ISCARN34
Length = 1714
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 34 gcccaccctgcgcca 48
|||||||||||||||
Sbjct: 391 gcccaccctgcgcca 405
>ISAzo4
Length = 2757
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 193 gatcggcagctggct 207
|||||||||||||||
Sbjct: 2428 gatcggcagctggct 2414
>ISAli15
Length = 2658
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 109 catcgccggcgtcgc 123
|||||||||||||||
Sbjct: 1637 catcgccggcgtcgc 1623
>ISBlo6
Length = 1330
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 225 ccatcggcatcgacg 239
|||||||||||||||
Sbjct: 547 ccatcggcatcgacg 561
>ISAe1
Length = 1313
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 55 gctgcgcggctggca 69
|||||||||||||||
Sbjct: 904 gctgcgcggctggca 890
>ISHla11
Length = 1376
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 204 ggctccagccgctg 217
||||||||||||||
Sbjct: 736 ggctccagccgctg 723
>ISNha9
Length = 1322
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 226 catcggcatcgacg 239
||||||||||||||
Sbjct: 925 catcggcatcgacg 912
>ISAzs14
Length = 1176
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 176 gcctcctgggccgg 189
||||||||||||||
Sbjct: 580 gcctcctgggccgg 567
>ISAzs1
Length = 1508
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 165 cggccagcacagcc 178
||||||||||||||
Sbjct: 337 cggccagcacagcc 324
>ISMtsp13
Length = 1428
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 30 gcctgcccaccctg 43
||||||||||||||
Sbjct: 1339 gcctgcccaccctg 1352
>ISAar36
Length = 2571
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 45 gccatgtgttgctg 58
||||||||||||||
Sbjct: 1301 gccatgtgttgctg 1314
>ISAar19
Length = 1449
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 167 gccagcacagcctc 180
||||||||||||||
Sbjct: 569 gccagcacagcctc 556
>ISMex24
Length = 1677
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 226 catcggcatcgacg 239
||||||||||||||
Sbjct: 551 catcggcatcgacg 564
>ISStma4
Length = 1249
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 227 atcggcatcgacgc 240
||||||||||||||
Sbjct: 270 atcggcatcgacgc 283
>ISFpe1
Length = 2489
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 227 atcggcatcgacgc 240
||||||||||||||
Sbjct: 883 atcggcatcgacgc 896
>ISShes10
Length = 1113
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 145 cctgccggtcggtg 158
||||||||||||||
Sbjct: 430 cctgccggtcggtg 443
>ISUnCu4
Length = 1113
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 145 cctgccggtcggtg 158
||||||||||||||
Sbjct: 430 cctgccggtcggtg 443
>ISRsp3
Length = 2489
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 222 gccccatcggcatc 235
||||||||||||||
Sbjct: 1029 gccccatcggcatc 1016
>ISRpa3
Length = 1261
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 127 ggtgtggctgctca 140
||||||||||||||
Sbjct: 745 ggtgtggctgctca 758
>ISSfl11
Length = 1139
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 139 cacccacctgccgg 152
||||||||||||||
Sbjct: 898 cacccacctgccgg 911
>ISLve1
Length = 1231
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 151 ggtcggtgtcgatg 164
||||||||||||||
Sbjct: 554 ggtcggtgtcgatg 567
>ISBvi3
Length = 1282
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 59 cgcggctggcacga 72
||||||||||||||
Sbjct: 566 cgcggctggcacga 553
>ISMpa1
Length = 1500
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 114 ccggcgtcgcgctg 127
||||||||||||||
Sbjct: 1317 ccggcgtcgcgctg 1330
>ISBcen1
Length = 1357
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 165 cggccagcacagcc 178
||||||||||||||
Sbjct: 570 cggccagcacagcc 557
>IS986
Length = 1354
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 50 gtgttgctgcgcgg 63
||||||||||||||
Sbjct: 179 gtgttgctgcgcgg 192
>IS869
Length = 849
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 225 ccatcggcatcgac 238
||||||||||||||
Sbjct: 481 ccatcggcatcgac 468
>IS1071
Length = 3201
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 154 cggtgtcgatgcgg 167
||||||||||||||
Sbjct: 1678 cggtgtcgatgcgg 1691
>IS1016V4
Length = 672
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 209 cagccgctgctcag 222
||||||||||||||
Sbjct: 130 cagccgctgctcag 117
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_335_length_240_cov_0.895706_ID_5840
(240 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISThsp18 | IS1182 | Thiomonas sp. | 36 | 0.019 | |
| ISAeme20 | IS3 | IS3 | Aeromonas media | 32 | 0.30 |
| ISBj5 | IS630 | Bradyrhizobium japonicum | 30 | 1.2 | |
| ISGob7 | ISKra4 | ISKra4 | Gemmata obscuriglobus | 30 | 1.2 |
| ISMdi11 | IS481 | Methylobacterium dichloromethanicum | 30 | 1.2 | |
| IS869 | IS5 | IS427 | Agrobacterium tumefaciens | 30 | 1.2 |
| IS1537 | IS607 | Mycobacterium tuberculosis | 30 | 1.2 | |
| ISAve2 | IS5 | IS903 | Aeromonas veronii | 28 | 4.7 |
| ISMno24 | IS91 | Methylobacterium nodulans | 28 | 4.7 | |
| ISAs15 | IS5 | IS903 | Aeromonas salmonicida | 28 | 4.7 |
| ISAod1 | IS256 | IS1249 | Actinomyces odontolyticus | 28 | 4.7 |
| ISNpe6 | IS1595 | ISH4 | Natrinema pellirubrum | 28 | 4.7 |
| ISPfr19 | IS481 | Propionibacterium freudenreichii | 28 | 4.7 | |
| ISArsp6 | Tn3 | Arthrobacter sp. | 28 | 4.7 | |
| IS693 | IS66 | Rhizobium sp. | 28 | 4.7 | |
| ISMdi5 | IS3 | IS3 | Methylobacterium dichloromethanicum | 28 | 4.7 |
| ISCARN1 | IS607 | Metagenomic data from CARNOULES | 28 | 4.7 | |
| ISMsm4 | ISL3 | Mycobacterium smegmatis | 28 | 4.7 | |
| ISNpu3 | IS4 | IS4 | Nostoc punctiforme | 28 | 4.7 |
| ISRru1 | IS3 | IS51 | Rhodococcus ruber | 28 | 4.7 |
>ISThsp18
Length = 1330
Score = 36.2 bits (18), Expect = 0.019
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 187 gggcgcaaaacgtgggaatcgc 208
||||||||| ||||||||||||
Sbjct: 1176 gggcgcaaaccgtgggaatcgc 1197
>ISAeme20
Length = 1264
Score = 32.2 bits (16), Expect = 0.30
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 151 ttcaaggcgacaaccc 166
||||||||||||||||
Sbjct: 653 ttcaaggcgacaaccc 668
>ISBj5
Length = 1185
Score = 30.2 bits (15), Expect = 1.2
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 87 caccaacggcgccatcggc 105
|||||||||||| ||||||
Sbjct: 109 caccaacggcgcgatcggc 91
>ISGob7
Length = 1463
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 71 tgatcgcggccgtgg 85
|||||||||||||||
Sbjct: 855 tgatcgcggccgtgg 869
>ISMdi11
Length = 1053
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 70 ctgatcgcggccgtg 84
|||||||||||||||
Sbjct: 597 ctgatcgcggccgtg 611
>IS869
Length = 849
Score = 30.2 bits (15), Expect = 1.2
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 97 gccatcggcatagacaacg 115
||||||||||| |||||||
Sbjct: 482 gccatcggcatcgacaacg 464
>IS1537
Length = 1921
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 67 gtcctgatcgcggcc 81
|||||||||||||||
Sbjct: 1080 gtcctgatcgcggcc 1066
>ISAve2
Length = 1062
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 95 gcgccatcggcata 108
||||||||||||||
Sbjct: 672 gcgccatcggcata 659
>ISMno24
Length = 2157
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 74 tcgcggccgtggcc 87
||||||||||||||
Sbjct: 925 tcgcggccgtggcc 912
>ISAs15
Length = 1062
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 95 gcgccatcggcata 108
||||||||||||||
Sbjct: 672 gcgccatcggcata 659
>ISAod1
Length = 1334
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 216 gccactgcctggtc 229
||||||||||||||
Sbjct: 804 gccactgcctggtc 791
>ISNpe6
Length = 1004
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 116 cgctgccgtggcga 129
||||||||||||||
Sbjct: 179 cgctgccgtggcga 192
>ISPfr19
Length = 1089
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 33 ccgcgccggtggcg 46
||||||||||||||
Sbjct: 465 ccgcgccggtggcg 452
>ISArsp6
Length = 26712
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 72 gatcgcggccgtgg 85
||||||||||||||
Sbjct: 5451 gatcgcggccgtgg 5438
>IS693
Length = 3078
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 70 ctgatcgcggccgt 83
||||||||||||||
Sbjct: 2565 ctgatcgcggccgt 2578
>ISMdi5
Length = 1279
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 210 cggccggccactgc 223
||||||||||||||
Sbjct: 140 cggccggccactgc 127
>ISCARN1
Length = 2232
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 81 cgtggccaccaacg 94
||||||||||||||
Sbjct: 1504 cgtggccaccaacg 1491
>ISMsm4
Length = 1458
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 35 gcgccggtggcggt 48
||||||||||||||
Sbjct: 580 gcgccggtggcggt 593
>ISNpu3
Length = 1513
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 160 acaaccctggggtt 173
||||||||||||||
Sbjct: 1392 acaaccctggggtt 1379
>ISRru1
Length = 1345
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 69 cctgatcgcggccg 82
||||||||||||||
Sbjct: 640 cctgatcgcggccg 627
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_336_length_240_cov_1.30061_ID_5842
(240 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISApr6 | IS66 | Alpha proteobacterium | 40 | 0.001 | |
| ISGxy1 | IS3 | IS150 | Gluconacetobacter xylinus | 34 | 0.076 |
| ISVsp13 | IS3 | IS150 | Verrucomicrobium spinosum | 32 | 0.30 |
| ISRso14 | IS3 | IS407 | Ralstonia solanacearum | 32 | 0.30 |
| ISPg5 | IS3 | IS3 | Porphyromonas gingivalis | 32 | 0.30 |
| TnAs2 | Tn3 | Aeromonas salmonicida | 30 | 1.2 | |
| ISBj5 | IS630 | Bradyrhizobium japonicum | 30 | 1.2 | |
| ISAli18 | ISL3 | Azospirillum lipoferum | 30 | 1.2 | |
| ISMav5 | IS481 | Mycobacterium avium | 30 | 1.2 | |
| ISNisp3 | IS3 | IS407 | Nitrobacter sp. | 30 | 1.2 |
| ISMyma5 | IS481 | - | Mycobacterium marinum | 30 | 1.2 |
| ISBcen4 | IS110 | IS1111 | Burkholderia cenocepacia | 30 | 1.2 |
| ISUnCu7 | ISKra4 | ISAzba1 | Uncultured bacterium | 28 | 4.7 |
| ISPa40 | Tn3 | Pseudomonas aeruginosa | 28 | 4.7 | |
| ISAtsp9 | ISNCY | ISMae2 | Arthrospira sp. | 28 | 4.7 |
| ISAzs32 | IS110 | IS1111 | Azospirillum sp. | 28 | 4.7 |
| ISButh4 | IS5 | IS5 | Burkholderia thailandensis | 28 | 4.7 |
| ISMex34 | IS200/IS605 | IS200 | Methylobacterium extorquens | 28 | 4.7 |
| ISAcma12 | ISAs1 | Acaryochloris marina | 28 | 4.7 | |
| ISCARN62 | ISNCY | IS1202 | Metagenomic data from CARNOULES | 28 | 4.7 |
| ISCARN30 | IS5 | IS427 | Metagenomic data from CARNOULES | 28 | 4.7 |
| ISGdi9 | IS481 | Gluconacetobacter diazotrophicus | 28 | 4.7 | |
| ISFpe1 | IS66 | Fulvimarina pelagi | 28 | 4.7 | |
| ISAau4 | Tn3 | Arthrobacter aurescens | 28 | 4.7 | |
| ISSsp4 | IS21 | Sphingomonas sp. | 28 | 4.7 | |
| ISLca4 | ISLre2 | Lactobacillus casei | 28 | 4.7 | |
| ISArch7 | IS66 | ISBst12 | Uncultured archeon | 28 | 4.7 |
| ISMbu4 | ISL3 | Methanococcoides burtonii | 28 | 4.7 | |
| ISBlo3 | IS3 | Bifidobacterium longum | 28 | 4.7 | |
| IS1141 | IS3 | IS3 | Mycobacterium intracellulare | 28 | 4.7 |
>ISApr6
Length = 2479
Score = 40.1 bits (20), Expect = 0.001
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 159 cgctgccggtgaacacctcg 178
||||||||||||||||||||
Sbjct: 140 cgctgccggtgaacacctcg 121
>ISGxy1
Length = 1313
Score = 34.2 bits (17), Expect = 0.076
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 104 tcgatgaacacattgtccagc 124
||||||||||| |||||||||
Sbjct: 1018 tcgatgaacacgttgtccagc 998
>ISVsp13
Length = 1503
Score = 32.2 bits (16), Expect = 0.30
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 103 ttcgatgaacacattgtcca 122
|||||||||||| |||||||
Sbjct: 1051 ttcgatgaacacgttgtcca 1032
>ISRso14
Length = 1234
Score = 32.2 bits (16), Expect = 0.30
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 47 cgcgcctcgttgtaat 62
||||||||||||||||
Sbjct: 143 cgcgcctcgttgtaat 158
>ISPg5
Length = 1512
Score = 32.2 bits (16), Expect = 0.30
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 45 gacgcgcctcgttgta 60
||||||||||||||||
Sbjct: 1243 gacgcgcctcgttgta 1228
>TnAs2
Length = 8650
Score = 30.2 bits (15), Expect = 1.2
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 165 cggtgaacacctcgccgac 183
|||||||||||| ||||||
Sbjct: 5181 cggtgaacaccttgccgac 5163
>ISBj5
Length = 1185
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 167 gtgaacacctcgccg 181
|||||||||||||||
Sbjct: 1015 gtgaacacctcgccg 1001
>ISAli18
Length = 1752
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 117 tgtccagcgcgacga 131
|||||||||||||||
Sbjct: 1015 tgtccagcgcgacga 1001
>ISMav5
Length = 1357
Score = 30.2 bits (15), Expect = 1.2
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 163 gccggtgaacacctcgccg 181
|||||||||||||| ||||
Sbjct: 740 gccggtgaacaccttgccg 722
>ISNisp3
Length = 1234
Score = 30.2 bits (15), Expect = 1.2
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 102 cttcgatgaacacattgtc 120
||||||||||| |||||||
Sbjct: 999 cttcgatgaacgcattgtc 981
>ISMyma5
Length = 1838
Score = 30.2 bits (15), Expect = 1.2
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 163 gccggtgaacacctcgccg 181
|||||||||||||| ||||
Sbjct: 814 gccggtgaacaccttgccg 796
>ISBcen4
Length = 1349
Score = 30.2 bits (15), Expect = 1.2
Identities = 22/23 (95%), Gaps = 1/23 (4%)
Strand = Plus / Minus
Query: 160 gctgccggt-gaacacctcgccg 181
||||||||| |||||||||||||
Sbjct: 152 gctgccggtcgaacacctcgccg 130
>ISUnCu7
Length = 2273
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 98 aagccttcgatgaa 111
||||||||||||||
Sbjct: 1409 aagccttcgatgaa 1396
>ISPa40
Length = 6592
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 72 cttcgcccaactcg 85
||||||||||||||
Sbjct: 3868 cttcgcccaactcg 3855
>ISAtsp9
Length = 1421
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 23 ggaagagcagcgag 36
||||||||||||||
Sbjct: 1217 ggaagagcagcgag 1204
>ISAzs32
Length = 1601
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 219 cgacatcgcgcgag 232
||||||||||||||
Sbjct: 836 cgacatcgcgcgag 823
>ISButh4
Length = 1483
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 163 gccggtgaacacct 176
||||||||||||||
Sbjct: 401 gccggtgaacacct 388
>ISMex34
Length = 658
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 169 gaacacctcgccga 182
||||||||||||||
Sbjct: 243 gaacacctcgccga 230
>ISAcma12
Length = 1166
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 198 aaaaacacttcagc 211
||||||||||||||
Sbjct: 607 aaaaacacttcagc 620
>ISCARN62
Length = 1398
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 126 cgacgaagaggccg 139
||||||||||||||
Sbjct: 612 cgacgaagaggccg 599
>ISCARN30
Length = 832
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 11 aaacgctggcgggg 24
||||||||||||||
Sbjct: 721 aaacgctggcgggg 734
>ISGdi9
Length = 1044
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 170 aacacctcgccgac 183
||||||||||||||
Sbjct: 892 aacacctcgccgac 905
>ISFpe1
Length = 2489
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 224 tcgcgcgaggcttc 237
||||||||||||||
Sbjct: 390 tcgcgcgaggcttc 377
>ISAau4
Length = 3898
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 155 gacacgctgccggt 168
||||||||||||||
Sbjct: 3556 gacacgctgccggt 3543
>ISSsp4
Length = 2558
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 162 tgccggtgaacacc 175
||||||||||||||
Sbjct: 750 tgccggtgaacacc 737
>ISLca4
Length = 1595
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 100 gccttcgatgaaca 113
||||||||||||||
Sbjct: 644 gccttcgatgaaca 631
>ISArch7
Length = 1839
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 59 taatgaaaaaagtc 72
||||||||||||||
Sbjct: 143 taatgaaaaaagtc 156
>ISMbu4
Length = 1274
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 59 taatgaaaaaagtc 72
||||||||||||||
Sbjct: 266 taatgaaaaaagtc 253
>ISBlo3
Length = 1480
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 177 cgccgacccgatcc 190
||||||||||||||
Sbjct: 1128 cgccgacccgatcc 1141
>IS1141
Length = 1588
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 171 acacctcgccgacc 184
||||||||||||||
Sbjct: 754 acacctcgccgacc 767
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_337_length_239_cov_0.895062_ID_5844
(239 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISStau5 | IS66 | ISBst12 | Stigmatella aurantiaca | 32 | 0.30 |
| ISTsu1 | IS256 | Thermaerobacter subterraneus | 30 | 1.2 | |
| ISAcif1 | ISNCY | ISMae2 | Acidithiobacillus ferrivorans | 30 | 1.2 |
| ISGsp4 | ISLre2 | Geobacillus sp. | 30 | 1.2 | |
| TnAs3 | Tn3 | Aeromonas salmonicida | 28 | 4.7 | |
| ISBj12 | ISNCY | ISLbi1 | Bradyrhizobium japonicum | 28 | 4.7 |
| ISUnCu18 | ISKra4 | ISAzba1 | Uncultured bacterium | 28 | 4.7 |
| ISSusp3 | ISKra4 | ISAzba1 | Sulfitobacter sp. | 28 | 4.7 |
| ISRssp7 | ISKra4 | ISAzba1 | Roseovarius sp. | 28 | 4.7 |
| ISAzs20 | IS66 | Azospirillum sp. | 28 | 4.7 | |
| ISYen4 | IS1182 | Yersinia enterocolitica | 28 | 4.7 | |
| ISShes11 | Tn3 | Shewanella sp. | 28 | 4.7 | |
| ISLru1 | IS5 | IS5 | Leptospirillum rubarum | 28 | 4.7 |
| ISMav6 | IS110 | Mycobacterium avium | 28 | 4.7 | |
| ISAzo2 | IS1182 | Azoarcus sp. | 28 | 4.7 | |
| ISAzo1 | IS1182 | Azoarcus sp. | 28 | 4.7 | |
| ISAcma29 | IS630 | Acaryochloris marina | 28 | 4.7 | |
| ISBj5_B | IS5 | IS5 | Bradyrhizobium japonicum | 28 | 4.7 |
| ISNwi3 | IS1595 | ISNwi1 | Nitrobacter winogradskyi | 28 | 4.7 |
| ISGvi2 | IS4 | IS50 | Gloeobacter violaceus | 28 | 4.7 |
| ISPme1 | IS1380 | Paracoccus methylutens | 28 | 4.7 | |
| ISPa42 | Tn3 | Pseudomonas aeruginosa | 28 | 4.7 | |
| ISBm3 | IS481 | - | Brucella melitensis | 28 | 4.7 |
>ISStau5
Length = 1580
Score = 32.2 bits (16), Expect = 0.30
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 31 ggcgaaggctggtggg 46
||||||||||||||||
Sbjct: 432 ggcgaaggctggtggg 447
>ISTsu1
Length = 1315
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 164 catggccaagatcga 178
|||||||||||||||
Sbjct: 1209 catggccaagatcga 1223
>ISAcif1
Length = 2464
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 208 gccgaatcgctgccg 222
|||||||||||||||
Sbjct: 1011 gccgaatcgctgccg 1025
>ISGsp4
Length = 1707
Score = 30.2 bits (15), Expect = 1.2
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 210 cgaatcgctgccgggatgc 228
||||||| |||||||||||
Sbjct: 1162 cgaatcgatgccgggatgc 1180
>TnAs3
Length = 18735
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 133 tcaaccgccttggt 146
||||||||||||||
Sbjct: 18416 tcaaccgccttggt 18429
>ISBj12
Length = 1743
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 188 cccggcctcctccg 201
||||||||||||||
Sbjct: 1630 cccggcctcctccg 1617
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 187 acccggcctcctcc 200
||||||||||||||
Sbjct: 1657 acccggcctcctcc 1670
>ISUnCu18
Length = 1434
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 107 catcggcaacaccc 120
||||||||||||||
Sbjct: 1286 catcggcaacaccc 1299
>ISSusp3
Length = 1434
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 107 catcggcaacaccc 120
||||||||||||||
Sbjct: 1286 catcggcaacaccc 1299
>ISRssp7
Length = 1434
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 107 catcggcaacaccc 120
||||||||||||||
Sbjct: 1286 catcggcaacaccc 1299
>ISAzs20
Length = 2811
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 37 ggctggtggggccg 50
||||||||||||||
Sbjct: 373 ggctggtggggccg 360
>ISYen4
Length = 1597
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 158 cagcatcatggcca 171
||||||||||||||
Sbjct: 1306 cagcatcatggcca 1319
>ISShes11
Length = 7669
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 133 tcaaccgccttggt 146
||||||||||||||
Sbjct: 7350 tcaaccgccttggt 7363
>ISLru1
Length = 1608
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 180 ggccggaacccggc 193
||||||||||||||
Sbjct: 394 ggccggaacccggc 381
>ISMav6
Length = 1472
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 170 caagatcgaaggcc 183
||||||||||||||
Sbjct: 1261 caagatcgaaggcc 1274
>ISAzo2
Length = 1545
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 167 ggccaagatcgaag 180
||||||||||||||
Sbjct: 688 ggccaagatcgaag 701
>ISAzo1
Length = 1545
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 167 ggccaagatcgaag 180
||||||||||||||
Sbjct: 679 ggccaagatcgaag 692
>ISAcma29
Length = 1210
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 118 ccccgttggtcatg 131
||||||||||||||
Sbjct: 396 ccccgttggtcatg 409
>ISBj5_B
Length = 1524
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 170 caagatcgaaggcc 183
||||||||||||||
Sbjct: 859 caagatcgaaggcc 872
>ISNwi3
Length = 2345
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 168 gccaagatcgaagg 181
||||||||||||||
Sbjct: 192 gccaagatcgaagg 205
>ISGvi2
Length = 1487
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 95 caacgcacgctcca 108
||||||||||||||
Sbjct: 1145 caacgcacgctcca 1132
>ISPme1
Length = 1671
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 100 cacgctccatcggc 113
||||||||||||||
Sbjct: 286 cacgctccatcggc 299
>ISPa42
Length = 16941
Score = 28.2 bits (14), Expect = 4.7
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 161 catcatggccaagatcga 178
|||||||||||| |||||
Sbjct: 1888 catcatggccaacatcga 1905
>ISBm3
Length = 1022
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 87 ttcgcagacaacgc 100
||||||||||||||
Sbjct: 328 ttcgcagacaacgc 341
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_338_length_239_cov_0.882716_ID_5846
(239 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISAcma23 | ISL3 | Acaryochloris marina | 32 | 0.30 | |
| ISAfe4 | IS66 | Acidithiobacillus ferrooxidans | 32 | 0.30 | |
| ISRel26 | ISNCY | IS1202 | Rhizobium etli | 30 | 1.2 |
| ISAar12 | IS1380 | Arthrobacter arilaitensis | 30 | 1.2 | |
| ISRpa6 | ISAs1 | Rhodopseudomonas palustris | 30 | 1.2 | |
| ISAav3 | IS5 | - | Acidovorax avenae | 30 | 1.2 |
| IS1166 | IS256 | - | Rhodococcus sp. | 30 | 1.2 |
| ISMno16 | IS110 | IS1111 | Methylobacterium nodulans | 28 | 4.7 |
| ISRel10 | ISNCY | IS1202 | Rhizobium etli | 28 | 4.7 |
| ISSm4 | ISL3 | Serratia marcescens | 28 | 4.7 | |
| ISSri1 | ISKra4 | ISKra4 | Streptomyces rimosus | 28 | 4.7 |
| ISAzs29 | Tn3 | Azospirillum sp. | 28 | 4.7 | |
| ISRusp2 | IS5 | IS903 | Ruegeria sp. | 28 | 4.7 |
| ISGeob4 | IS5 | ISL2 | Geodermatophilus obscurus | 28 | 4.7 |
| ISGeob1 | IS5 | ISL2 | Geodermatophilus obscurus | 28 | 4.7 |
| ISMsm11 | IS1380 | Mycobacterium smegmatis | 28 | 4.7 | |
| ISMsm10 | IS1380 | Mycobacterium smegmatis | 28 | 4.7 | |
| ISCARN68 | IS256 | Metagenomic data from CARNOULES | 28 | 4.7 | |
| ISCARN30 | IS5 | IS427 | Metagenomic data from CARNOULES | 28 | 4.7 |
| ISThsp3 | IS66 | Thiomonas sp. | 28 | 4.7 | |
| ISGdi11 | IS3 | IS407 | Gluconacetobacter diazotrophicus | 28 | 4.7 |
| ISFsp11 | IS66 | ISBst12 | Frankia sp. | 28 | 4.7 |
| ISSsp4 | IS21 | Sphingomonas sp. | 28 | 4.7 | |
| ISGur10 | IS3 | IS3 | Geobacter uraniumreducens | 28 | 4.7 |
| ISNmo3 | IS481 | Nitrococcus mobilis | 28 | 4.7 | |
| ISRde2 | IS3 | IS407 | Roseobacter denitrificans | 28 | 4.7 |
| ISBlma1 | IS4 | IS4Sa | Blastopirellula marina | 28 | 4.7 |
| ISCc2 | IS110 | Caulobacter crescentus | 28 | 4.7 | |
| ISAzo6 | IS1634 | Azoarcus sp. | 28 | 4.7 | |
| ISUnCu1 | IS110 | IS1111 | Uncultured bacterium | 28 | 4.7 |
| ISMmg2 | IS110 | IS1111 | Magnetospirillum magnetotacticum | 28 | 4.7 |
| ISBfun1 | IS110 | IS1111 | Burkholderia fungorum | 28 | 4.7 |
| ISRsp2 | IS21 | - | Rhizobium sp. | 28 | 4.7 |
| IS219 | IS1380 | - | Mycobacterium fortuitum | 28 | 4.7 |
| IS1631 | IS21 | - | Bradyrhizobium japonicum | 28 | 4.7 |
| IS1132 | IS256 | - | Corynebacterium diphtheriae | 28 | 4.7 |
>ISAcma23
Length = 1810
Score = 32.2 bits (16), Expect = 0.30
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 128 gtggtgcagctgcagc 143
||||||||||||||||
Sbjct: 432 gtggtgcagctgcagc 447
>ISAfe4
Length = 2477
Score = 32.2 bits (16), Expect = 0.30
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 115 cgccctgcgcgatgtggtgc 134
||||||||||||| ||||||
Sbjct: 841 cgccctgcgcgatctggtgc 860
>ISRel26
Length = 1634
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 21 agccgatcctgcagc 35
|||||||||||||||
Sbjct: 869 agccgatcctgcagc 855
>ISAar12
Length = 1736
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 144 agcgccatatcgctg 158
|||||||||||||||
Sbjct: 1648 agcgccatatcgctg 1634
>ISRpa6
Length = 1193
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 110 tttggcgccctgcgc 124
|||||||||||||||
Sbjct: 387 tttggcgccctgcgc 373
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 135 agctgcagcagcgc 148
||||||||||||||
Sbjct: 581 agctgcagcagcgc 568
>ISAav3
Length = 1321
Score = 30.2 bits (15), Expect = 1.2
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 103 ggcgggatttggcgccctg 121
||||||||||| |||||||
Sbjct: 707 ggcgggatttgtcgccctg 689
>IS1166
Length = 1469
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 180 agcccgctggcggcg 194
|||||||||||||||
Sbjct: 1293 agcccgctggcggcg 1307
>ISMno16
Length = 1404
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 96 cgcagcgggcggga 109
||||||||||||||
Sbjct: 792 cgcagcgggcggga 805
>ISRel10
Length = 2528
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 21 agccgatcctgcag 34
||||||||||||||
Sbjct: 935 agccgatcctgcag 922
>ISSm4
Length = 9109
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 122 cgcgatgtggtgca 135
||||||||||||||
Sbjct: 676 cgcgatgtggtgca 689
>ISSri1
Length = 2269
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 51 tcgcgggcttcggc 64
||||||||||||||
Sbjct: 1640 tcgcgggcttcggc 1627
>ISAzs29
Length = 3897
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 94 cgcgcagcgggcgg 107
||||||||||||||
Sbjct: 3816 cgcgcagcgggcgg 3803
>ISRusp2
Length = 1049
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 101 cgggcgggatttgg 114
||||||||||||||
Sbjct: 619 cgggcgggatttgg 606
>ISGeob4
Length = 982
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 188 ggcggcgcgggcgg 201
||||||||||||||
Sbjct: 442 ggcggcgcgggcgg 429
>ISGeob1
Length = 1020
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 188 ggcggcgcgggcgg 201
||||||||||||||
Sbjct: 438 ggcggcgcgggcgg 425
>ISMsm11
Length = 1658
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 188 ggcggcgcgggcgg 201
||||||||||||||
Sbjct: 788 ggcggcgcgggcgg 775
>ISMsm10
Length = 1661
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 188 ggcggcgcgggcgg 201
||||||||||||||
Sbjct: 789 ggcggcgcgggcgg 776
>ISCARN68
Length = 1419
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 137 ctgcagcagcgcca 150
||||||||||||||
Sbjct: 432 ctgcagcagcgcca 419
>ISCARN30
Length = 832
Score = 28.2 bits (14), Expect = 4.7
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 103 ggcgggatttggcgccct 120
||||||||||| ||||||
Sbjct: 216 ggcgggatttgccgccct 233
>ISThsp3
Length = 2455
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 210 tcctgcggccaggc 223
||||||||||||||
Sbjct: 673 tcctgcggccaggc 660
>ISGdi11
Length = 1200
Score = 28.2 bits (14), Expect = 4.7
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 212 ctgcggccaggccaggat 229
|||| |||||||||||||
Sbjct: 911 ctgctgccaggccaggat 894
>ISFsp11
Length = 1836
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 188 ggcggcgcgggcgg 201
||||||||||||||
Sbjct: 1362 ggcggcgcgggcgg 1349
>ISSsp4
Length = 2558
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 158 gccgatgcgggtga 171
||||||||||||||
Sbjct: 560 gccgatgcgggtga 573
>ISGur10
Length = 1593
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 182 cccgctggcggcgc 195
||||||||||||||
Sbjct: 344 cccgctggcggcgc 331
>ISNmo3
Length = 1061
Score = 28.2 bits (14), Expect = 4.7
Identities = 20/22 (90%)
Strand = Plus / Minus
Query: 184 cgctggcggcgcgggcggattt 205
||||||| | ||||||||||||
Sbjct: 641 cgctggccgagcgggcggattt 620
>ISRde2
Length = 1203
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 35 ctgctcttcgctga 48
||||||||||||||
Sbjct: 95 ctgctcttcgctga 82
>ISBlma1
Length = 1528
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 21 agccgatcctgcag 34
||||||||||||||
Sbjct: 406 agccgatcctgcag 419
>ISCc2
Length = 1213
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 76 gagactgcctggcg 89
||||||||||||||
Sbjct: 744 gagactgcctggcg 731
>ISAzo6
Length = 1925
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 115 cgccctgcgcgatg 128
||||||||||||||
Sbjct: 1250 cgccctgcgcgatg 1237
>ISUnCu1
Length = 1381
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 184 cgctggcggcgcgg 197
||||||||||||||
Sbjct: 555 cgctggcggcgcgg 542
>ISMmg2
Length = 1380
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 136 gctgcagcagcgcc 149
||||||||||||||
Sbjct: 1010 gctgcagcagcgcc 997
>ISBfun1
Length = 1466
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 42 tcgctgagatcgcg 55
||||||||||||||
Sbjct: 712 tcgctgagatcgcg 725
>ISRsp2
Length = 2623
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 42 tcgctgagatcgcg 55
||||||||||||||
Sbjct: 435 tcgctgagatcgcg 422
>IS219
Length = 1654
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 188 ggcggcgcgggcgg 201
||||||||||||||
Sbjct: 786 ggcggcgcgggcgg 773
>IS1631
Length = 2712
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 111 ttggcgccctgcgc 124
||||||||||||||
Sbjct: 1970 ttggcgccctgcgc 1957
>IS1132
Length = 1441
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 188 ggcggcgcgggcgg 201
||||||||||||||
Sbjct: 1013 ggcggcgcgggcgg 1000
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_339_length_239_cov_0.876543_ID_5848
(239 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISPa43 | Tn3 | Pseudomonas aeruginosa | 34 | 0.076 | |
| TnAs2 | Tn3 | Aeromonas salmonicida | 30 | 1.2 | |
| ISSdi1 | IS1182 | Streptomyces diastaticus | 30 | 1.2 | |
| ISPfr16 | IS30 | Propionibacterium freudenreichii | 30 | 1.2 | |
| ISXoo13 | ISL3 | Xanthomonas oryzae | 30 | 1.2 | |
| ISSpo9 | IS5 | IS903 | Silicibacter pomeroyi | 30 | 1.2 |
| ISVei1 | IS3 | IS3 | Verminephrobacter eiseniae | 30 | 1.2 |
| ISBlo9 | IS3 | IS150 | Bifidobacterium longum | 30 | 1.2 |
| IS1326 | IS21 | - | Pseudomonas aeruginosa | 30 | 1.2 |
| IS1162 | IS21 | - | Pseudomonas fluorescens | 30 | 1.2 |
| ISNpe14 | IS5 | ISH1 | Natrinema pellirubrum | 28 | 4.7 |
| ISNsp6 | ISKra4 | ISMich2 | Nostoc sp. | 28 | 4.7 |
| ISMfu2 | ISKra4 | ISKra4 | Myxococcus fulvus | 28 | 4.7 |
| ISMme1 | ISAzo13 | Mesorhizobium metallidurans | 28 | 4.7 | |
| IS3509 | IS256 | IS1249 | Corynebacterium jeikeium | 28 | 4.7 |
| IS3503 | IS256 | IS1249 | Corynebacterium jeikeium | 28 | 4.7 |
| ISStau11 | ISAzo13 | Stigmatella aurantiaca | 28 | 4.7 | |
| ISStsp8 | IS5 | ISL2 | Streptomyces sp. | 28 | 4.7 |
| ISUnCu15 | IS5 | IS903 | Uncultured bacterium | 28 | 4.7 |
| ISSen3 | IS21 | Salmonella enterica | 28 | 4.7 | |
| ISVsp1 | IS1634 | Verrucomicrobium spinosum | 28 | 4.7 | |
| ISAcl1 | IS30 | Arthrobacter chlorophenolicus | 28 | 4.7 | |
| ISCur1 | IS1380 | Corynebacterium urealyticum | 28 | 4.7 | |
| ISAcr5 | IS1380 | Acidiphilium cryptum | 28 | 4.7 | |
| ISAnsp9 | ISAs1 | Anaeromyxobacter sp. | 28 | 4.7 | |
| ISMex28 | IS5 | IS5 | Methylobacterium extorquens | 28 | 4.7 |
| ISMex26 | ISL3 | Methylobacterium extorquens | 28 | 4.7 | |
| ISAnsp4 | IS21 | Anaeromyxobacter sp. | 28 | 4.7 | |
| ISStma12 | IS481 | Stenotrophomonas maltophilia | 28 | 4.7 | |
| ISCARN55 | IS256 | Metagenomic data from CARNOULES | 28 | 4.7 | |
| ISSba20 | IS21 | Shewanella baltica | 28 | 4.7 | |
| ISThsp3 | IS66 | Thiomonas sp. | 28 | 4.7 | |
| ISAeh1 | IS66 | Alkalilimnicola ehrlichei | 28 | 4.7 | |
| ISLxx6 | IS5 | IS427 | Leifsonia xyli | 28 | 4.7 |
| ISMno1 | ISAs1 | Methylobacterium nodulans | 28 | 4.7 | |
| ISPa25 | IS110 | IS1111 | Pseudomonas aeruginosa | 28 | 4.7 |
| ISOgr1 | IS3 | IS51 | Oceanicola granulosus | 28 | 4.7 |
| ISHha1 | IS3 | IS3 | Halorhodospira halophila | 28 | 4.7 |
| ISBam1 | IS3 | IS150 | Burkholderia ambifaria | 28 | 4.7 |
| ISPosp2 | IS701 | Polaromonas sp. | 28 | 4.7 | |
| ISMyma6 | IS481 | - | Mycobacterium marinum | 28 | 4.7 |
| ISBcen20 | IS5 | IS427 | Burkholderia cenocepacia | 28 | 4.7 |
| ISAzo6 | IS1634 | Azoarcus sp. | 28 | 4.7 | |
| ISBmu1 | IS21 | Burkholderia multivorans | 28 | 4.7 | |
| IS883 | IS66 | Ralstonia eutropha | 28 | 4.7 | |
| IS1112b | IS30 | - | Xanthomonas oryzae | 28 | 4.7 |
| IS1112a | IS30 | - | Xanthomonas oryzae | 28 | 4.7 |
| IS1112 | IS30 | - | Xanthomonas oryzae | 28 | 4.7 |
| IS1096 | ISL3 | - | Mycobacterium smegmatis | 28 | 4.7 |
>ISPa43
Length = 19903
Score = 34.2 bits (17), Expect = 0.076
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 202 gcacggtggtggccacg 218
|||||||||||||||||
Sbjct: 13595 gcacggtggtggccacg 13579
>TnAs2
Length = 8650
Score = 30.2 bits (15), Expect = 1.2
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 104 cggcgcgctgccgcagatc 122
|||| ||||||||||||||
Sbjct: 5559 cggcccgctgccgcagatc 5541
>ISSdi1
Length = 1789
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 204 acggtggtggccacg 218
|||||||||||||||
Sbjct: 1055 acggtggtggccacg 1041
>ISPfr16
Length = 1234
Score = 30.2 bits (15), Expect = 1.2
Identities = 21/23 (91%)
Strand = Plus / Minus
Query: 102 atcggcgcgctgccgcagatctc 124
||||||||||||| || ||||||
Sbjct: 185 atcggcgcgctgcagccgatctc 163
>ISXoo13
Length = 1312
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 97 tggggatcggcgcgc 111
|||||||||||||||
Sbjct: 91 tggggatcggcgcgc 105
>ISSpo9
Length = 1049
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 44 cgacctggactgggc 58
|||||||||||||||
Sbjct: 314 cgacctggactgggc 328
>ISVei1
Length = 1214
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 53 ctgggccgcgctggc 67
|||||||||||||||
Sbjct: 404 ctgggccgcgctggc 390
>ISBlo9
Length = 1226
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 37 gcaccgccgacctgg 51
|||||||||||||||
Sbjct: 837 gcaccgccgacctgg 851
>IS1326
Length = 2470
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 210 gtggccacgctcggc 224
|||||||||||||||
Sbjct: 1225 gtggccacgctcggc 1239
>IS1162
Length = 2634
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 224 cacgctggccgacgc 238
|||||||||||||||
Sbjct: 2433 cacgctggccgacgc 2447
>ISNpe14
Length = 1131
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 59 cgcgctggcgcgac 72
||||||||||||||
Sbjct: 678 cgcgctggcgcgac 691
>ISNsp6
Length = 1172
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 122 ctcaaagcagctga 135
||||||||||||||
Sbjct: 840 ctcaaagcagctga 853
>ISMfu2
Length = 1554
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 145 gtgtaccggccgac 158
||||||||||||||
Sbjct: 369 gtgtaccggccgac 356
>ISMme1
Length = 1324
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 207 gtggtggccacgct 220
||||||||||||||
Sbjct: 491 gtggtggccacgct 504
>IS3509
Length = 1380
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 178 aaaacggcaccacc 191
||||||||||||||
Sbjct: 202 aaaacggcaccacc 215
>IS3503
Length = 1380
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 178 aaaacggcaccacc 191
||||||||||||||
Sbjct: 202 aaaacggcaccacc 215
>ISStau11
Length = 1349
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 17 caccggtcatctcc 30
||||||||||||||
Sbjct: 614 caccggtcatctcc 627
>ISStsp8
Length = 881
Score = 28.2 bits (14), Expect = 4.7
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 28 tccaggacggcaccgccg 45
||||||||||| ||||||
Sbjct: 81 tccaggacggctccgccg 64
>ISUnCu15
Length = 1053
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 47 cctggactgggccg 60
||||||||||||||
Sbjct: 321 cctggactgggccg 334
>ISSen3
Length = 1956
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 9 accttcgccaccgg 22
||||||||||||||
Sbjct: 611 accttcgccaccgg 598
>ISVsp1
Length = 2082
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 60 gcgctggcgcgacc 73
||||||||||||||
Sbjct: 756 gcgctggcgcgacc 769
>ISAcl1
Length = 1341
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 140 gcatggtgtaccgg 153
||||||||||||||
Sbjct: 903 gcatggtgtaccgg 890
>ISCur1
Length = 1627
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 20 cggtcatctccagg 33
||||||||||||||
Sbjct: 1313 cggtcatctccagg 1300
>ISAcr5
Length = 1618
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 152 ggccgacacgccgg 165
||||||||||||||
Sbjct: 711 ggccgacacgccgg 698
>ISAnsp9
Length = 1704
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 159 acgccggcggccgc 172
||||||||||||||
Sbjct: 38 acgccggcggccgc 25
>ISMex28
Length = 1310
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 145 gtgtaccggccgac 158
||||||||||||||
Sbjct: 137 gtgtaccggccgac 150
>ISMex26
Length = 1676
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 226 cgctggccgacgcg 239
||||||||||||||
Sbjct: 265 cgctggccgacgcg 278
>ISAnsp4
Length = 2195
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 33 gacggcaccgccga 46
||||||||||||||
Sbjct: 327 gacggcaccgccga 340
>ISStma12
Length = 1023
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 94 acatggggatcggc 107
||||||||||||||
Sbjct: 958 acatggggatcggc 971
>ISCARN55
Length = 1364
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 20 cggtcatctccagg 33
||||||||||||||
Sbjct: 1253 cggtcatctccagg 1240
>ISSba20
Length = 2394
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 130 agctgatcgcgcat 143
||||||||||||||
Sbjct: 2139 agctgatcgcgcat 2152
>ISThsp3
Length = 2455
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 57 gccgcgctggcgcg 70
||||||||||||||
Sbjct: 218 gccgcgctggcgcg 231
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 218 gctcggcacgctgg 231
||||||||||||||
Sbjct: 972 gctcggcacgctgg 959
>ISAeh1
Length = 2320
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 226 cgctggccgacgcg 239
||||||||||||||
Sbjct: 2128 cgctggccgacgcg 2115
>ISLxx6
Length = 919
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 160 cgccggcggccgcg 173
||||||||||||||
Sbjct: 148 cgccggcggccgcg 135
>ISMno1
Length = 1218
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 202 gcacggtggtggcc 215
||||||||||||||
Sbjct: 899 gcacggtggtggcc 912
>ISPa25
Length = 1410
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 106 gcgcgctgccgcag 119
||||||||||||||
Sbjct: 264 gcgcgctgccgcag 251
>ISOgr1
Length = 1255
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 49 tggactgggccgcg 62
||||||||||||||
Sbjct: 963 tggactgggccgcg 976
>ISHha1
Length = 1264
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 132 ctgatcgcgcatgg 145
||||||||||||||
Sbjct: 868 ctgatcgcgcatgg 855
>ISBam1
Length = 1448
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 69 cgaccgcatcaaac 82
||||||||||||||
Sbjct: 1343 cgaccgcatcaaac 1356
>ISPosp2
Length = 1484
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 221 cggcacgctggccg 234
||||||||||||||
Sbjct: 489 cggcacgctggccg 476
>ISMyma6
Length = 1072
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 42 gccgacctggactg 55
||||||||||||||
Sbjct: 313 gccgacctggactg 300
>ISBcen20
Length = 914
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 60 gcgctggcgcgacc 73
||||||||||||||
Sbjct: 240 gcgctggcgcgacc 253
>ISAzo6
Length = 1925
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 38 caccgccgacctgg 51
||||||||||||||
Sbjct: 290 caccgccgacctgg 277
>ISBmu1
Length = 2581
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 207 gtggtggccacgct 220
||||||||||||||
Sbjct: 569 gtggtggccacgct 556
>IS883
Length = 2461
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 116 gcagatctcaaagc 129
||||||||||||||
Sbjct: 990 gcagatctcaaagc 1003
>IS1112b
Length = 1055
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 33 gacggcaccgccga 46
||||||||||||||
Sbjct: 680 gacggcaccgccga 693
>IS1112a
Length = 1055
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 33 gacggcaccgccga 46
||||||||||||||
Sbjct: 680 gacggcaccgccga 693
>IS1112
Length = 1055
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 33 gacggcaccgccga 46
||||||||||||||
Sbjct: 680 gacggcaccgccga 693
>IS1096
Length = 2259
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 182 cggcaccaccgatc 195
||||||||||||||
Sbjct: 266 cggcaccaccgatc 253
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 125 aaagcagctgatcg 138
||||||||||||||
Sbjct: 2219 aaagcagctgatcg 2232
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_340_length_239_cov_0.882716_ID_5850
(239 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISC1257 | IS256 | ISC1250 | Sulfolobus solfataricus | 32 | 0.30 |
| ISSpu7 | IS1634 | Shewanella putrefaciens | 30 | 1.2 | |
| ISEc53 | ISL3 | Escherichia coli | 28 | 4.7 | |
| ISAmo1 | ISLre2 | Anaerobaculum mobile | 28 | 4.7 | |
| ISSin1 | IS256 | IS1249 | Scardovia inopinata | 28 | 4.7 |
| ISAnhy1 | ISLre2 | Anaerobaculum hydrogeniformans | 28 | 4.7 | |
| ISHsa1 | ISH6 | Halococcus salifodinae | 28 | 4.7 | |
| ISHth2 | ISH6 | Halococcus thailandensis | 28 | 4.7 | |
| ISMrh1 | IS256 | Mycobacterium rhodesiae | 28 | 4.7 | |
| ISMae37 | ISL3 | Microcystis aeruginosa | 28 | 4.7 | |
| ISMasp7 | IS1380 | Magnetococcus sp. | 28 | 4.7 | |
| ISBfi1 | IS1380 | IS942 | Bacteroides finegoldii | 28 | 4.7 |
| ISThsp10 | IS21 | Thiomonas sp. | 28 | 4.7 | |
| ISVvu2 | IS4 | IS4 | Vibrio vulnificus | 28 | 4.7 |
| ISSc1 | IS30 | - | Spiroplasma citri | 28 | 4.7 |
| IS6120 | IS256 | - | Mycobacterium smegmatis | 28 | 4.7 |
>ISC1257
Length = 1257
Score = 32.2 bits (16), Expect = 0.30
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 43 atcatgttaaaagtgagaga 62
||||||||||||| ||||||
Sbjct: 373 atcatgttaaaagggagaga 392
>ISSpu7
Length = 1761
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 160 tggaagaggttaaaa 174
|||||||||||||||
Sbjct: 1443 tggaagaggttaaaa 1429
>ISEc53
Length = 1885
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 211 tgaaagagctggca 224
||||||||||||||
Sbjct: 1553 tgaaagagctggca 1566
>ISAmo1
Length = 1572
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 184 gcagccagtttatc 197
||||||||||||||
Sbjct: 916 gcagccagtttatc 903
>ISSin1
Length = 1339
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 66 aaaaccagttattc 79
||||||||||||||
Sbjct: 947 aaaaccagttattc 960
>ISAnhy1
Length = 1571
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 184 gcagccagtttatc 197
||||||||||||||
Sbjct: 915 gcagccagtttatc 902
>ISHsa1
Length = 1467
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 104 cgagaagcatcgtc 117
||||||||||||||
Sbjct: 1031 cgagaagcatcgtc 1044
>ISHth2
Length = 1442
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 104 cgagaagcatcgtc 117
||||||||||||||
Sbjct: 1006 cgagaagcatcgtc 1019
>ISMrh1
Length = 1472
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 12 atcaaggagatcta 25
||||||||||||||
Sbjct: 1005 atcaaggagatcta 1018
>ISMae37
Length = 1245
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 56 tgagagagtaaaaa 69
||||||||||||||
Sbjct: 380 tgagagagtaaaaa 393
>ISMasp7
Length = 1661
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 5 tttcaatatcaagg 18
||||||||||||||
Sbjct: 1511 tttcaatatcaagg 1498
>ISBfi1
Length = 1615
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 83 gctttggctggaaa 96
||||||||||||||
Sbjct: 1180 gctttggctggaaa 1193
>ISThsp10
Length = 2501
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 134 accgccgagcgaga 147
||||||||||||||
Sbjct: 1778 accgccgagcgaga 1791
>ISVvu2
Length = 1430
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 58 agagagtaaaaacc 71
||||||||||||||
Sbjct: 738 agagagtaaaaacc 725
>ISSc1
Length = 8273
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 65 aaaaaccagttatt 78
||||||||||||||
Sbjct: 8111 aaaaaccagttatt 8124
>IS6120
Length = 1486
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 12 atcaaggagatcta 25
||||||||||||||
Sbjct: 1007 atcaaggagatcta 1020
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_341_length_239_cov_0.895062_ID_5852
(239 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| TnXo19 | Tn3 | Xanthomonas oryzae | 32 | 0.30 | |
| ISDge15 | IS6 | Deinococcus geothermalis | 32 | 0.30 | |
| ISAeme20 | IS3 | IS3 | Aeromonas media | 30 | 1.2 |
| TnAs1 | Tn3 | Aeromonas salmonicida | 30 | 1.2 | |
| ISCc5 | IS1182 | Caulobacter crescentus | 30 | 1.2 | |
| ISMsm6 | IS1634 | Mycobacterium smegmatis | 30 | 1.2 | |
| ISAav1 | IS21 | - | Acidovorax avenae | 30 | 1.2 |
| IS4Sa | IS4 | IS4Sa | Synechocystis sp. | 30 | 1.2 |
| IS407 | IS3 | IS407 | Burkholderia cepacia | 30 | 1.2 |
| ISRma1 | ISKra4 | ISKra4 | Rhodopirellula maiorica | 28 | 4.7 |
| ISAnsp14 | IS256 | Anaeromyxobacter sp. | 28 | 4.7 | |
| ISPbe1 | IS3 | IS407 | Paracoccus bengalensis | 28 | 4.7 |
| ISAau5 | ISNCY | Arthrobacter aurescens | 28 | 4.7 | |
| ISApr8 | IS1380 | alpha proteobacterium | 28 | 4.7 | |
| ISCARN61 | IS256 | Metagenomic data from CARNOULES | 28 | 4.7 | |
| ISCARN59 | IS256 | Metagenomic data from CARNOULES | 28 | 4.7 | |
| ISCARN47 | IS256 | Metagenomic data from CARNOULES | 28 | 4.7 | |
| ISAli13 | IS21 | Azospirillum lipoferum | 28 | 4.7 | |
| ISEc22 | IS66 | Escherichia coli | 28 | 4.7 | |
| ISMaq1 | IS3 | IS407 | Marinobacter aquaeolei | 28 | 4.7 |
| ISGvi2 | IS4 | IS50 | Gloeobacter violaceus | 28 | 4.7 |
| ISPa42 | Tn3 | Pseudomonas aeruginosa | 28 | 4.7 | |
| IS660 | IS1182 | - | Bacillus halodurans | 28 | 4.7 |
>TnXo19
Length = 18767
Score = 32.2 bits (16), Expect = 0.30
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 185 aacgccagcacccaca 200
||||||||||||||||
Sbjct: 1086 aacgccagcacccaca 1071
>ISDge15
Length = 747
Score = 32.2 bits (16), Expect = 0.30
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 30 tccagatgccaccgag 45
||||||||||||||||
Sbjct: 269 tccagatgccaccgag 254
>ISAeme20
Length = 1264
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 174 acaagaagatgaacg 188
|||||||||||||||
Sbjct: 478 acaagaagatgaacg 492
>TnAs1
Length = 6694
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 48 tgccgccgatgacca 62
|||||||||||||||
Sbjct: 1532 tgccgccgatgacca 1518
>ISCc5
Length = 1577
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 94 gccgatctcggtctt 108
|||||||||||||||
Sbjct: 1427 gccgatctcggtctt 1413
>ISMsm6
Length = 1765
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 49 gccgccgatgaccat 63
|||||||||||||||
Sbjct: 272 gccgccgatgaccat 258
>ISAav1
Length = 2532
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 27 ccatccagatgccac 41
|||||||||||||||
Sbjct: 882 ccatccagatgccac 868
>IS4Sa
Length = 1303
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 78 catttttggcaatca 92
|||||||||||||||
Sbjct: 994 catttttggcaatca 980
>IS407
Length = 1236
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 202 cgccgattgcacgcc 216
|||||||||||||||
Sbjct: 521 cgccgattgcacgcc 535
>ISRma1
Length = 1728
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 116 cccatgtcgaggta 129
||||||||||||||
Sbjct: 1464 cccatgtcgaggta 1451
>ISAnsp14
Length = 1629
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 117 ccatgtcgaggtag 130
||||||||||||||
Sbjct: 1207 ccatgtcgaggtag 1194
>ISPbe1
Length = 1200
Score = 28.2 bits (14), Expect = 4.7
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 46 gatgccgccgatgaccat 63
||||||||||||| ||||
Sbjct: 1127 gatgccgccgatgcccat 1110
>ISAau5
Length = 3989
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 136 cgtggccaacgcgg 149
||||||||||||||
Sbjct: 3437 cgtggccaacgcgg 3424
>ISApr8
Length = 1667
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 139 ggccaacgcggtgc 152
||||||||||||||
Sbjct: 1185 ggccaacgcggtgc 1198
>ISCARN61
Length = 1368
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 182 atgaacgccagcac 195
||||||||||||||
Sbjct: 1065 atgaacgccagcac 1052
>ISCARN59
Length = 1360
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 118 catgtcgaggtaga 131
||||||||||||||
Sbjct: 1236 catgtcgaggtaga 1223
>ISCARN47
Length = 1368
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 182 atgaacgccagcac 195
||||||||||||||
Sbjct: 1065 atgaacgccagcac 1052
>ISAli13
Length = 2756
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 133 gggcgtggccaacg 146
||||||||||||||
Sbjct: 936 gggcgtggccaacg 949
>ISEc22
Length = 2454
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 43 gaggatgccgccga 56
||||||||||||||
Sbjct: 1272 gaggatgccgccga 1285
>ISMaq1
Length = 1194
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 131 aagggcgtggccaa 144
||||||||||||||
Sbjct: 367 aagggcgtggccaa 380
>ISGvi2
Length = 1487
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 42 cgaggatgccgccg 55
||||||||||||||
Sbjct: 218 cgaggatgccgccg 231
>ISPa42
Length = 16941
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 219 ggcgactgaaaaat 232
||||||||||||||
Sbjct: 12916 ggcgactgaaaaat 12929
>IS660
Length = 1963
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 29 atccagatgccacc 42
||||||||||||||
Sbjct: 1104 atccagatgccacc 1117
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_342_length_239_cov_0.901235_ID_5854
(239 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISMlo5 | ISNCY | ISDol1 | Mesorhizobium loti | 30 | 1.2 |
| ISRsp17 | ISNCY | ISDol1 | Rhizobium sp. | 30 | 1.2 |
| ISMtsp18 | IS3 | IS2 | Methylobacterium sp. | 30 | 1.2 |
| ISMgi4 | IS1182 | Mycobacterium gilvum | 30 | 1.2 | |
| ISMdi13 | IS256 | Methylobacterium dichloromethanicum | 30 | 1.2 | |
| ISSpo8 | IS1595 | ISNwi1 | Silicibacter pomeroyi | 30 | 1.2 |
| ISTha3 | IS91 | Thauera sp. | 28 | 4.7 | |
| ISAve1 | IS110 | IS1111 | Aeromonas veronii | 28 | 4.7 |
| ISNamo23 | IS200/IS605 | IS1341 | Natronomonas moolapensis | 28 | 4.7 |
| TnShfr1 | Tn3 | Shewanella frigidimarina | 28 | 4.7 | |
| ISAs16 | IS110 | IS1111 | Aeromonas salmonicida | 28 | 4.7 |
| ISHhu6 | IS200/IS605 | IS1341 | Halobacterium hubeiense | 28 | 4.7 |
| ISNisp4 | IS256 | Nitrobacter sp. | 28 | 4.7 | |
| ISGau2 | IS3 | IS407 | Gemmatimonas aurantiaca | 28 | 4.7 |
| ISMno10 | IS1182 | Methylobacterium nodulans | 28 | 4.7 | |
| ISArsp6 | Tn3 | Arthrobacter sp. | 28 | 4.7 | |
| ISCARN36 | IS110 | IS1111 | Metagenomic data from CARNOULES | 28 | 4.7 |
| ISAli20 | Tn3 | Azospirillum lipoferum | 28 | 4.7 | |
| ISMmg4 | IS701 | Magnetospirillum magneticum | 28 | 4.7 | |
| ISBfun4 | IS701 | Burkholderia xenovorans | 28 | 4.7 | |
| ISSpo1 | IS110 | IS1111 | Silicibacter pomeroyi | 28 | 4.7 |
| ISRm10-1 | IS630 | - | Sinorhizobium meliloti | 28 | 4.7 |
| IS900 | IS110 | - | Mycobacterium paratuberculosis | 28 | 4.7 |
>ISMlo5
Length = 1664
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 221 gccgccgcctgacgc 235
|||||||||||||||
Sbjct: 1177 gccgccgcctgacgc 1163
>ISRsp17
Length = 1664
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 221 gccgccgcctgacgc 235
|||||||||||||||
Sbjct: 1179 gccgccgcctgacgc 1165
>ISMtsp18
Length = 1341
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 173 cgcctgctcgggcgc 187
|||||||||||||||
Sbjct: 360 cgcctgctcgggcgc 374
>ISMgi4
Length = 1772
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 171 accgcctgctcgggc 185
|||||||||||||||
Sbjct: 718 accgcctgctcgggc 732
>ISMdi13
Length = 1416
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 219 ccgccgccgcctgac 233
|||||||||||||||
Sbjct: 1368 ccgccgccgcctgac 1382
>ISSpo8
Length = 1863
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 187 cgcctcaaatcgcgc 201
|||||||||||||||
Sbjct: 95 cgcctcaaatcgcgc 81
>ISTha3
Length = 2424
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 130 cagcatcctgcgca 143
||||||||||||||
Sbjct: 1430 cagcatcctgcgca 1417
>ISAve1
Length = 1393
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 21 ataccgtcaagctg 34
||||||||||||||
Sbjct: 294 ataccgtcaagctg 307
>ISNamo23
Length = 1557
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 110 cgctttgtcttcga 123
||||||||||||||
Sbjct: 1173 cgctttgtcttcga 1160
>TnShfr1
Length = 5131
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 27 tcaagctggccagc 40
||||||||||||||
Sbjct: 3621 tcaagctggccagc 3634
>ISAs16
Length = 1404
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 21 ataccgtcaagctg 34
||||||||||||||
Sbjct: 292 ataccgtcaagctg 305
>ISHhu6
Length = 1564
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 110 cgctttgtcttcga 123
||||||||||||||
Sbjct: 1178 cgctttgtcttcga 1165
>ISNisp4
Length = 1418
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 219 ccgccgccgcctga 232
||||||||||||||
Sbjct: 1370 ccgccgccgcctga 1383
>ISGau2
Length = 1197
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 209 ccgcatcagcccgc 222
||||||||||||||
Sbjct: 618 ccgcatcagcccgc 631
>ISMno10
Length = 1749
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 169 ctaccgcctgctcg 182
||||||||||||||
Sbjct: 730 ctaccgcctgctcg 743
>ISArsp6
Length = 26712
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 218 cccgccgccgcctg 231
||||||||||||||
Sbjct: 8032 cccgccgccgcctg 8045
>ISCARN36
Length = 1180
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 177 tgctcgggcgcgcc 190
||||||||||||||
Sbjct: 402 tgctcgggcgcgcc 389
>ISAli20
Length = 3828
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 31 gctggccagccgac 44
||||||||||||||
Sbjct: 3150 gctggccagccgac 3137
>ISMmg4
Length = 1507
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 187 cgcctcaaatcgcg 200
||||||||||||||
Sbjct: 118 cgcctcaaatcgcg 105
>ISBfun4
Length = 1464
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 207 ggccgcatcagccc 220
||||||||||||||
Sbjct: 173 ggccgcatcagccc 160
>ISSpo1
Length = 1363
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 149 ggcaagggcgaggt 162
||||||||||||||
Sbjct: 787 ggcaagggcgaggt 800
>ISRm10-1
Length = 1042
Score = 28.2 bits (14), Expect = 4.7
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 57 gcgcgcccgatggcatcc 74
|||||| |||||||||||
Sbjct: 824 gcgcgctcgatggcatcc 807
>IS900
Length = 1451
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 217 gcccgccgccgcct 230
||||||||||||||
Sbjct: 1352 gcccgccgccgcct 1365
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_343_length_239_cov_0.777778_ID_5856
(239 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISMtsp7 | IS110 | IS1111 | Methylobacterium sp. | 32 | 0.30 |
| ISShsp2 | IS1182 | Sphingomonas sp. | 32 | 0.30 | |
| ISHti9 | IS200/IS605 | IS1341 | Halorhabdus tiamatea | 28 | 4.7 |
| ISMtsp9 | IS110 | Methylobacterium sp. | 28 | 4.7 | |
| ISTel2 | IS200/IS605 | Thermosynechococcus elongatus | 28 | 4.7 | |
| ISNisp7 | IS5 | Nitrobacter sp. | 28 | 4.7 | |
| ISMno26 | IS110 | IS1111 | Methylobacterium nodulans | 28 | 4.7 |
| ISRce1 | ISAs1 | Rhodospirillum centenum | 28 | 4.7 | |
| ISThsp16 | IS1182 | Thiomonas sp. | 28 | 4.7 | |
| ISAzo40 | IS1380 | Azoarcus sp. | 28 | 4.7 | |
| ISCARN3 | IS21 | Metagenomic data from CARNOULES | 28 | 4.7 | |
| ISDpr4 | IS66 | Delta proteobacterium | 28 | 4.7 | |
| ISEc21 | IS110 | Escherichia coli | 28 | 4.7 | |
| ISPpu10 | IS110 | Pseudomonas putida | 28 | 4.7 | |
| IS481v2 | IS481 | - | Bordetella pertussis | 28 | 4.7 |
| IS481v1 | IS481 | - | Bordetella pertussis | 28 | 4.7 |
| IS481 | IS481 | Bordetella pertussis | 28 | 4.7 | |
| IS1113 | IS256 | - | Xanthomonas oryzae | 28 | 4.7 |
>ISMtsp7
Length = 1316
Score = 32.2 bits (16), Expect = 0.30
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 184 ggtgcgcccgacgcgc 199
||||||||||||||||
Sbjct: 161 ggtgcgcccgacgcgc 146
>ISShsp2
Length = 1526
Score = 32.2 bits (16), Expect = 0.30
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 172 ggcgagaacggcggtgcgcc 191
|||||| |||||||||||||
Sbjct: 785 ggcgagcacggcggtgcgcc 804
>ISHti9
Length = 1587
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 16 ctgatcggacacgc 29
||||||||||||||
Sbjct: 982 ctgatcggacacgc 969
>ISMtsp9
Length = 1456
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 39 cgatatgcccgagc 52
||||||||||||||
Sbjct: 832 cgatatgcccgagc 845
>ISTel2
Length = 1675
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 30 cttggttctcgata 43
||||||||||||||
Sbjct: 1269 cttggttctcgata 1256
>ISNisp7
Length = 1276
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 98 tcgcggccgagctg 111
||||||||||||||
Sbjct: 21 tcgcggccgagctg 34
>ISMno26
Length = 1353
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 39 cgatatgcccgagc 52
||||||||||||||
Sbjct: 292 cgatatgcccgagc 279
>ISRce1
Length = 1267
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 172 ggcgagaacggcgg 185
||||||||||||||
Sbjct: 602 ggcgagaacggcgg 615
>ISThsp16
Length = 1602
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 139 gccccggcctgcgt 152
||||||||||||||
Sbjct: 236 gccccggcctgcgt 223
>ISAzo40
Length = 1694
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 99 cgcggccgagctgc 112
||||||||||||||
Sbjct: 390 cgcggccgagctgc 403
>ISCARN3
Length = 2070
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 155 cgcacctggccatc 168
||||||||||||||
Sbjct: 1520 cgcacctggccatc 1533
>ISDpr4
Length = 2431
Score = 28.2 bits (14), Expect = 4.7
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 67 gccggcttgaatcacccc 84
|||||| |||||||||||
Sbjct: 1824 gccggcatgaatcacccc 1807
>ISEc21
Length = 1374
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 106 gagctgcatgcgcg 119
||||||||||||||
Sbjct: 809 gagctgcatgcgcg 796
>ISPpu10
Length = 1314
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 69 cggcttgaatcacc 82
||||||||||||||
Sbjct: 273 cggcttgaatcacc 260
>IS481v2
Length = 1043
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 54 gacggtgctggctg 67
||||||||||||||
Sbjct: 406 gacggtgctggctg 393
>IS481v1
Length = 1043
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 54 gacggtgctggctg 67
||||||||||||||
Sbjct: 406 gacggtgctggctg 393
>IS481
Length = 1043
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 54 gacggtgctggctg 67
||||||||||||||
Sbjct: 406 gacggtgctggctg 393
>IS1113
Length = 1306
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 129 ccgcctgagcgccc 142
||||||||||||||
Sbjct: 234 ccgcctgagcgccc 221
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_344_length_239_cov_0.740741_ID_5858
(239 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISHall1 | IS200/IS605 | IS605 | Halostagnicola larsenii | 34 | 0.076 |
| ISHgi1 | IS200/IS605 | IS605 | Haloferax gibbonsii | 34 | 0.076 |
| ISAzs36 | IS481 | Azospirillum sp. | 30 | 1.2 | |
| ISRhru4 | IS256 | Rhodospirillum rubrum | 30 | 1.2 | |
| ISDpr5 | IS1380 | Delta proteobacterium | 30 | 1.2 | |
| ISFK1 | IS21 | Bradyrhizobium japonicum | 28 | 4.7 | |
| ISErh1 | IS3 | IS150 | Erysipelothrix rhusiopathiae | 28 | 4.7 |
| ISMno13 | IS66 | Methylobacterium nodulans | 28 | 4.7 | |
| IS1090 | IS256 | Ralstonia eutropha | 28 | 4.7 | |
| ISMdi18 | IS1595 | ISNwi1 | Methylobacterium dichloromethanicum | 28 | 4.7 |
| ISOgr3 | IS5 | IS903 | Oceanicola granulosus | 28 | 4.7 |
| ISLmo1 | IS3 | IS150 | Listeria monocytogenes | 28 | 4.7 |
| ISTth2 | IS4 | IS10 | Thermus thermophilus | 28 | 4.7 |
| ISRso9 | IS5 | IS5 | Ralstonia solanacearum | 28 | 4.7 |
| ISRso7 | IS256 | - | Ralstonia solanacearum | 28 | 4.7 |
| ISPa42 | Tn3 | Pseudomonas aeruginosa | 28 | 4.7 | |
| ISPa1328 | IS256 | Pseudomonas aeruginosa | 28 | 4.7 | |
| ISMco3 | IS701 | Methanosaeta concilii | 28 | 4.7 |
>ISHall1
Length = 1866
Score = 34.2 bits (17), Expect = 0.076
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 32 agcgatttcgcgggatg 48
|||||||||||||||||
Sbjct: 1793 agcgatttcgcgggatg 1777
>ISHgi1
Length = 1870
Score = 34.2 bits (17), Expect = 0.076
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 32 agcgatttcgcgggatg 48
|||||||||||||||||
Sbjct: 1797 agcgatttcgcgggatg 1781
>ISAzs36
Length = 2622
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 170 tcctccatcagttcg 184
|||||||||||||||
Sbjct: 328 tcctccatcagttcg 314
>ISRhru4
Length = 1411
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 173 tccatcagttcggcc 187
|||||||||||||||
Sbjct: 1070 tccatcagttcggcc 1056
>ISDpr5
Length = 1653
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 189 ggtcaatggcgcgct 203
|||||||||||||||
Sbjct: 1006 ggtcaatggcgcgct 992
>ISFK1
Length = 2592
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 34 cgatttcgcgggat 47
||||||||||||||
Sbjct: 73 cgatttcgcgggat 86
>ISErh1
Length = 1280
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 102 tgccaatttcattt 115
||||||||||||||
Sbjct: 149 tgccaatttcattt 136
>ISMno13
Length = 2459
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 196 ggcgcgctgtacgc 209
||||||||||||||
Sbjct: 1181 ggcgcgctgtacgc 1168
>IS1090
Length = 1343
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 140 agcgccagatagac 153
||||||||||||||
Sbjct: 649 agcgccagatagac 636
>ISMdi18
Length = 3479
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 175 catcagttcggcct 188
||||||||||||||
Sbjct: 2786 catcagttcggcct 2773
>ISOgr3
Length = 1052
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 20 tggggaaaggggag 33
||||||||||||||
Sbjct: 1006 tggggaaaggggag 1019
>ISLmo1
Length = 1228
Score = 28.2 bits (14), Expect = 4.7
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 106 aatttcattttgacagct 123
||||||||||||| ||||
Sbjct: 122 aatttcattttgatagct 105
>ISTth2
Length = 1184
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 20 tggggaaaggggag 33
||||||||||||||
Sbjct: 487 tggggaaaggggag 474
>ISRso9
Length = 1483
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 88 tgaaatcggcacca 101
||||||||||||||
Sbjct: 1443 tgaaatcggcacca 1456
>ISRso7
Length = 1344
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 140 agcgccagatagac 153
||||||||||||||
Sbjct: 649 agcgccagatagac 636
>ISPa42
Length = 16941
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 176 atcagttcggcctg 189
||||||||||||||
Sbjct: 16636 atcagttcggcctg 16623
>ISPa1328
Length = 1328
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 140 agcgccagatagac 153
||||||||||||||
Sbjct: 646 agcgccagatagac 633
>ISMco3
Length = 1406
Score = 28.2 bits (14), Expect = 4.7
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 167 caatcctccatcag 180
||||||||||||||
Sbjct: 1318 caatcctccatcag 1305
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_345_length_238_cov_0.888199_ID_5860
(238 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISRf1 | Tn3 | - | Sinorhizobium fredii | 36 | 0.019 |
| ISMsm7 | IS3 | IS3 | Mycobacterium smegmatis | 30 | 1.2 |
| ISAusp1 | IS1595 | ISNha5 | Aurantimonas sp. | 30 | 1.2 |
| ISAeme4 | IS4 | ISH8 | Aeromonas media | 28 | 4.6 |
| ISAs31 | IS3 | IS3 | Aeromonas salmonicida | 28 | 4.6 |
| ISFsp17 | ISKra4 | ISKra4 | Frankia sp. | 28 | 4.6 |
| ISGeob4 | IS5 | ISL2 | Geodermatophilus obscurus | 28 | 4.6 |
| ISStma5 | IS3 | IS3 | Stenotrophomonas maltophilia | 28 | 4.6 |
| ISSba11 | IS21 | Shewanella baltica | 28 | 4.6 | |
| ISDsp1 | IS3 | IS407 | Dehalococcoides sp. | 28 | 4.6 |
| ISFac3 | ISNCY | ISA1214 | Ferroplasma acidarmanus | 28 | 4.6 |
| ISBcen9 | IS3 | IS150 | Burkholderia cenocepacia | 28 | 4.6 |
| IS71 | IS66 | - | Agrobacterium tumefaciens | 28 | 4.6 |
| IS1245 | IS256 | - | Mycobacterium avium | 28 | 4.6 |
>ISRf1
Length = 1002
Score = 36.2 bits (18), Expect = 0.019
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 44 ggcgatagaagggctgga 61
||||||||||||||||||
Sbjct: 821 ggcgatagaagggctgga 838
>ISMsm7
Length = 1280
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 32 ctcggtgatgtcggc 46
|||||||||||||||
Sbjct: 768 ctcggtgatgtcggc 754
>ISAusp1
Length = 3418
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 22 cgcctgccatctcgg 36
|||||||||||||||
Sbjct: 3263 cgcctgccatctcgg 3277
>ISAeme4
Length = 1383
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 18 attacgcctgccat 31
||||||||||||||
Sbjct: 204 attacgcctgccat 217
>ISAs31
Length = 1322
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 35 ggtgatgtcggcga 48
||||||||||||||
Sbjct: 829 ggtgatgtcggcga 816
>ISFsp17
Length = 1693
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 34 cggtgatgtcggcg 47
||||||||||||||
Sbjct: 683 cggtgatgtcggcg 670
>ISGeob4
Length = 982
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 67 tcgctcctgacctg 80
||||||||||||||
Sbjct: 41 tcgctcctgacctg 28
>ISStma5
Length = 1228
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 32 ctcggtgatgtcgg 45
||||||||||||||
Sbjct: 759 ctcggtgatgtcgg 746
>ISSba11
Length = 2394
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 112 ttctgacactatta 125
||||||||||||||
Sbjct: 321 ttctgacactatta 334
>ISDsp1
Length = 1210
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 180 cagaagacgtcata 193
||||||||||||||
Sbjct: 826 cagaagacgtcata 839
>ISFac3
Length = 1270
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 116 gacactattattcg 129
||||||||||||||
Sbjct: 9 gacactattattcg 22
>ISBcen9
Length = 1439
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 32 ctcggtgatgtcgg 45
||||||||||||||
Sbjct: 953 ctcggtgatgtcgg 940
>IS71
Length = 2386
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 221 acgtgtgctcttcc 234
||||||||||||||
Sbjct: 673 acgtgtgctcttcc 660
>IS1245
Length = 1414
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 34 cggtgatgtcggcg 47
||||||||||||||
Sbjct: 1076 cggtgatgtcggcg 1063
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_346_length_238_cov_0.900621_ID_5862
(238 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISHtu3 | IS200/IS605 | IS1341 | Haloterrigena turkmenica | 30 | 1.2 |
| ISPna4 | IS5 | IS903 | Polaromonas naphthalenivorans | 30 | 1.2 |
| ISBun2 | IS1595 | ISNwi1 | Bacteroides uniformis | 30 | 1.2 |
| ISPepr4 | IS4 | ISPepr1 | Pelobacter propionicus | 30 | 1.2 |
| ISAjo2 | ISNCY | IS1202 | Acinetobacter johnsonii | 28 | 4.6 |
| ISVal1 | IS5 | IS903 | Vibrio alginolyticus | 28 | 4.6 |
| ISAcsp1 | Tn3 | Acinetobacter sp. | 28 | 4.6 | |
| ISKol8 | IS701 | Kosmotoga olearia | 28 | 4.6 | |
| IS1677 | IS1380 | Corynebacterium glutamicum | 28 | 4.6 | |
| ISBthe6 | IS66 | Bacteroides thetaiotaomicron | 28 | 4.6 | |
| ISGur15 | IS21 | Geobacter uraniumreducens | 28 | 4.6 | |
| IS231Q | IS4 | IS231 | Bacillus thuringiensis | 28 | 4.6 |
| ISSc1 | IS30 | - | Spiroplasma citri | 28 | 4.6 |
>ISHtu3
Length = 1471
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 10 ttctattcctaatca 24
|||||||||||||||
Sbjct: 92 ttctattcctaatca 106
>ISPna4
Length = 1093
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 110 aatgagcaggctggc 124
|||||||||||||||
Sbjct: 33 aatgagcaggctggc 47
>ISBun2
Length = 4739
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 131 cactttcagcccaaa 145
|||||||||||||||
Sbjct: 2996 cactttcagcccaaa 2982
>ISPepr4
Length = 1562
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 78 aatcagtaccttggt 92
|||||||||||||||
Sbjct: 478 aatcagtaccttggt 464
>ISAjo2
Length = 1482
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 96 gtttgttttgctgt 109
||||||||||||||
Sbjct: 1335 gtttgttttgctgt 1322
>ISVal1
Length = 1054
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 94 ttgtttgttttgct 107
||||||||||||||
Sbjct: 202 ttgtttgttttgct 189
>ISAcsp1
Length = 3736
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 45 ggccaacgcttccg 58
||||||||||||||
Sbjct: 2777 ggccaacgcttccg 2790
>ISKol8
Length = 1212
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 101 ttttgctgtaatga 114
||||||||||||||
Sbjct: 907 ttttgctgtaatga 894
>IS1677
Length = 1688
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 200 gatgaggcatcaca 213
||||||||||||||
Sbjct: 970 gatgaggcatcaca 983
>ISBthe6
Length = 2544
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 112 tgagcaggctggca 125
||||||||||||||
Sbjct: 1448 tgagcaggctggca 1435
>ISGur15
Length = 2390
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 79 atcagtaccttggt 92
||||||||||||||
Sbjct: 721 atcagtaccttggt 708
>IS231Q
Length = 1653
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 185 tggctagaaatgtg 198
||||||||||||||
Sbjct: 435 tggctagaaatgtg 422
>ISSc1
Length = 8273
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 91 gtattgtttgtttt 104
||||||||||||||
Sbjct: 6477 gtattgtttgtttt 6490
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_347_length_238_cov_0.906832_ID_5864
(238 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISDal2 | IS5 | IS5 | Desulfatibacillum alkenivorans | 36 | 0.019 |
| ISDeac1 | IS1380 | Delftia acidovorans | 30 | 1.2 | |
| ISBj7_B | IS66 | Bradyrhizobium japonicum | 30 | 1.2 | |
| ISSod21 | IS110 | IS1111 | Shewanella oneidensis | 30 | 1.2 |
| ISRpa3 | IS481 | Rhodopseudomonas palustris | 30 | 1.2 | |
| ISMbu9 | IS91 | Methanococcoides burtonii | 30 | 1.2 | |
| ISHade1 | IS200/IS605 | IS1341 | Haloferax denitrificans | 28 | 4.6 |
| ISHca1 | IS200/IS605 | IS1341 | Halorubrum californiensis | 28 | 4.6 |
| ISHko4 | IS200/IS605 | IS1341 | Halorubrum kocurii | 28 | 4.6 |
| ISHla15 | IS200/IS605 | Halorubrum lacusprofundi | 28 | 4.6 | |
| ISAs31 | IS3 | IS3 | Aeromonas salmonicida | 28 | 4.6 |
| ISAba30 | IS200/IS605 | Acinetobacter baumannii | 28 | 4.6 | |
| ISHbo4 | IS200/IS605 | IS605 | Halogeometricum borinquense | 28 | 4.6 |
| ISHmu6 | IS200/IS605 | Halomicrobium mukohataei | 28 | 4.6 | |
| ISMme1 | ISAzo13 | Mesorhizobium metallidurans | 28 | 4.6 | |
| ISUnCu15 | IS5 | IS903 | Uncultured bacterium | 28 | 4.6 |
| ISYps3 | Tn3 | Yersinia pseudotuberculosis | 28 | 4.6 | |
| ISApr6 | IS66 | Alpha proteobacterium | 28 | 4.6 | |
| ISAli16 | IS110 | Azospirillum lipoferum | 28 | 4.6 | |
| ISRle6 | IS6 | Rhizobium leguminosarum | 28 | 4.6 | |
| ISGur11 | IS481 | Geobacter uraniumreducens | 28 | 4.6 | |
| ISRso20 | IS3 | IS3 | Ralstonia solanacearum | 28 | 4.6 |
| ISHor2 | ISLre2 | Halothermothrix orenii | 28 | 4.6 | |
| ISFsp5 | IS4 | IS4 | Frankia sp. | 28 | 4.6 |
| ISSod6 | IS5 | IS427 | Shewanella oneidensis | 28 | 4.6 |
| ISMba7 | IS110 | Methanosarcina barkeri | 28 | 4.6 | |
| ISHma12 | IS200/IS605 | Haloarcula marismortui | 28 | 4.6 | |
| ISMlo3 | IS110 | IS1111 | Mesorhizobium loti | 28 | 4.6 |
| ISPpu8 | IS4 | IS4 | Pseudomonas putida | 28 | 4.6 |
| ISRle39d | IS6 | - | Rhizobium leguminosarum | 28 | 4.6 |
| ISRle39B | IS6 | - | Rhizobium leguminosarum | 28 | 4.6 |
| ISRle39A | IS6 | - | Rhizobium leguminosarum | 28 | 4.6 |
| IS30D | IS30 | - | Escherichia coli | 28 | 4.6 |
| IS30 | IS30 | - | Escherichia coli | 28 | 4.6 |
>ISDal2
Length = 1478
Score = 36.2 bits (18), Expect = 0.019
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 183 cagcacccgcaagctgaa 200
||||||||||||||||||
Sbjct: 771 cagcacccgcaagctgaa 788
>ISDeac1
Length = 1736
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 109 cagcgcagtggcttc 123
|||||||||||||||
Sbjct: 434 cagcgcagtggcttc 420
>ISBj7_B
Length = 2865
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 33 tggattggtcgcgcc 47
|||||||||||||||
Sbjct: 792 tggattggtcgcgcc 806
>ISSod21
Length = 1345
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 176 tggacaacagcaccc 190
|||||||||||||||
Sbjct: 687 tggacaacagcaccc 701
>ISRpa3
Length = 1261
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 157 gaccacggcgagccg 171
|||||||||||||||
Sbjct: 711 gaccacggcgagccg 697
>ISMbu9
Length = 1281
Score = 30.2 bits (15), Expect = 1.2
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 178 gacaacagcacccgcaagc 196
||||| |||||||||||||
Sbjct: 537 gacaatagcacccgcaagc 519
>ISHade1
Length = 1528
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 64 gtcgataccgacgc 77
||||||||||||||
Sbjct: 850 gtcgataccgacgc 837
>ISHca1
Length = 1549
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 64 gtcgataccgacgc 77
||||||||||||||
Sbjct: 871 gtcgataccgacgc 858
>ISHko4
Length = 1517
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 64 gtcgataccgacgc 77
||||||||||||||
Sbjct: 837 gtcgataccgacgc 824
>ISHla15
Length = 1835
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 64 gtcgataccgacgc 77
||||||||||||||
Sbjct: 1154 gtcgataccgacgc 1141
>ISAs31
Length = 1322
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 185 gcacccgcaagctg 198
||||||||||||||
Sbjct: 594 gcacccgcaagctg 607
>ISAba30
Length = 1770
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 62 atgtcgataccgac 75
||||||||||||||
Sbjct: 1060 atgtcgataccgac 1047
>ISHbo4
Length = 1835
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 64 gtcgataccgacgc 77
||||||||||||||
Sbjct: 1154 gtcgataccgacgc 1141
>ISHmu6
Length = 1889
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 64 gtcgataccgacgc 77
||||||||||||||
Sbjct: 1208 gtcgataccgacgc 1195
>ISMme1
Length = 1324
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 141 cgaatggcgctatc 154
||||||||||||||
Sbjct: 111 cgaatggcgctatc 98
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 64 gtcgataccgacgc 77
||||||||||||||
Sbjct: 826 gtcgataccgacgc 813
>ISUnCu15
Length = 1053
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 75 cgcgatcatcccga 88
||||||||||||||
Sbjct: 705 cgcgatcatcccga 718
>ISYps3
Length = 5723
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 114 cagtggcttcggcc 127
||||||||||||||
Sbjct: 1103 cagtggcttcggcc 1090
>ISApr6
Length = 2479
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 167 agccgggcatggac 180
||||||||||||||
Sbjct: 1628 agccgggcatggac 1615
>ISAli16
Length = 1153
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 159 ccacggcgagccgg 172
||||||||||||||
Sbjct: 328 ccacggcgagccgg 341
>ISRle6
Length = 891
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 143 aatggcgctatctg 156
||||||||||||||
Sbjct: 379 aatggcgctatctg 392
>ISGur11
Length = 1837
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 154 ctggaccacggcga 167
||||||||||||||
Sbjct: 304 ctggaccacggcga 317
>ISRso20
Length = 1287
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 132 cctgttcgacgaat 145
||||||||||||||
Sbjct: 1277 cctgttcgacgaat 1264
>ISHor2
Length = 1536
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 148 cgctatctggacca 161
||||||||||||||
Sbjct: 1432 cgctatctggacca 1419
>ISFsp5
Length = 1617
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 164 gcgagccgggcatg 177
||||||||||||||
Sbjct: 783 gcgagccgggcatg 796
>ISSod6
Length = 883
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 61 aatgtcgataccga 74
||||||||||||||
Sbjct: 718 aatgtcgataccga 705
>ISMba7
Length = 1522
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 87 gaagcaattcctga 100
||||||||||||||
Sbjct: 776 gaagcaattcctga 763
>ISHma12
Length = 1835
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 64 gtcgataccgacgc 77
||||||||||||||
Sbjct: 1154 gtcgataccgacgc 1141
>ISMlo3
Length = 1405
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 54 ccgtgcgaatgtcg 67
||||||||||||||
Sbjct: 1229 ccgtgcgaatgtcg 1242
>ISPpu8
Length = 1419
Score = 28.2 bits (14), Expect = 4.6
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 29 tcgatggattggtcgcgc 46
||||||||||| ||||||
Sbjct: 816 tcgatggattgctcgcgc 799
>ISRle39d
Length = 890
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 143 aatggcgctatctg 156
||||||||||||||
Sbjct: 377 aatggcgctatctg 390
>ISRle39B
Length = 890
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 143 aatggcgctatctg 156
||||||||||||||
Sbjct: 379 aatggcgctatctg 392
>ISRle39A
Length = 890
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 143 aatggcgctatctg 156
||||||||||||||
Sbjct: 379 aatggcgctatctg 392
>IS30D
Length = 1221
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 104 cgattcagcgcagt 117
||||||||||||||
Sbjct: 319 cgattcagcgcagt 306
>IS30
Length = 1221
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 104 cgattcagcgcagt 117
||||||||||||||
Sbjct: 319 cgattcagcgcagt 306
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_348_length_238_cov_0.906832_ID_5866
(238 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISAzo14 | IS1634 | Azoarcus sp. | 34 | 0.075 | |
| ISKpn23 | IS1380 | Klebsiella pneumoniae | 32 | 0.30 | |
| ISApr11 | IS1380 | Alpha proteobacterium | 32 | 0.30 | |
| IS1247 | IS1380 | - | Xanthobacter autotrophicus | 32 | 0.30 |
| IS1071 | Tn3 | - | Alcaligenes sp | 32 | 0.30 |
| ISNov1 | ISKra4 | ISAzba1 | Novosphingobium sp. | 30 | 1.2 |
| ISPfr16 | IS30 | Propionibacterium freudenreichii | 30 | 1.2 | |
| ISAar39 | ISL3 | Arthrobacter arilaitensis | 30 | 1.2 | |
| ISRssp9 | IS1380 | Roseovarius sp. | 30 | 1.2 | |
| ISApr9 | IS1380 | Alpha proteobacterium | 30 | 1.2 | |
| ISMex33 | IS3 | IS51 | Methylobacterium extorquens | 30 | 1.2 |
| ISAzo12 | IS21 | Azoarcus sp. | 30 | 1.2 | |
| ISRhsp5 | IS66 | Rhodobacter sphaeroides | 30 | 1.2 | |
| ISMno4 | IS66 | ISBst12 | Methylobacterium nodulans | 30 | 1.2 |
| ISRba4 | IS701 | Rhodopirellula baltica | 30 | 1.2 | |
| ISMt1 | IS5 | IS427 | Mycobacterium tuberculosis | 30 | 1.2 |
| IS1650 | IS5 | IS427 | Streptomyces coelicolor | 30 | 1.2 |
| ISHala4 | IS701 | Halobiforma lacisalsi | 28 | 4.6 | |
| ISHti12 | IS701 | Halorhabdus tiamatea | 28 | 4.6 | |
| ISHla19 | IS200/IS605 | Halorubrum lacusprofundi | 28 | 4.6 | |
| ISHla16 | IS200/IS605 | Halorubrum lacusprofundi | 28 | 4.6 | |
| ISAs28 | IS21 | Aeromonas salmonicida | 28 | 4.6 | |
| ISAs27 | IS21 | Aeromonas salmonicida | 28 | 4.6 | |
| ISAha3 | IS5 | IS903 | Acinetobacter haemolyticus | 28 | 4.6 |
| ISNamo19 | IS200/IS605 | IS605 | Natronomonas moolapensis | 28 | 4.6 |
| ISRme20 | IS21 | Ralstonia metallidurans | 28 | 4.6 | |
| ISTni1 | ISKra4 | ISKra4 | Thioalkalivibrio nitratireducens | 28 | 4.6 |
| ISNamo5 | IS701 | Natronomonas moolapensis | 28 | 4.6 | |
| ISHal1 | IS200/IS605 | Haloferax alexandrinus | 28 | 4.6 | |
| ISPsy30 | Tn3 | Pseudomonas syringae | 28 | 4.6 | |
| ISAjo1 | IS5 | IS903 | Acinetobacter johnsonii | 28 | 4.6 |
| ISHwa13 | ISH3 | Haloquadratum walsbyi | 28 | 4.6 | |
| ISRsp17 | ISNCY | ISDol1 | Rhizobium sp. | 28 | 4.6 |
| ISMtsp7 | IS110 | IS1111 | Methylobacterium sp. | 28 | 4.6 |
| ISMno13 | IS66 | Methylobacterium nodulans | 28 | 4.6 | |
| ISNosp1 | IS1380 | Nocardioides sp. | 28 | 4.6 | |
| ISMdi27 | IS21 | Methylobacterium dichloromethanicum | 28 | 4.6 | |
| ISGdi14 | IS3 | IS51 | Gluconacetobacter diazotrophicus | 28 | 4.6 |
| ISBad1 | IS21 | Bifidobacterium adolescentis | 28 | 4.6 | |
| ISButh1 | IS3 | IS2 | Burkholderia thailandensis | 28 | 4.6 |
| ISDsh1 | IS3 | IS51 | Dinoroseobacter shibae | 28 | 4.6 |
| ISFsp6 | IS4 | IS4 | Frankia sp. | 28 | 4.6 |
| ISDra3 | IS630 | Deinococcus radiodurans | 28 | 4.6 | |
| ISRso11 | IS3 | IS150 | Ralstonia solanacearum | 28 | 4.6 |
| ISRru1 | IS3 | IS51 | Rhodococcus ruber | 28 | 4.6 |
| ISHala1 | IS701 | Halobiforma lacisalsi | 28 | 4.6 | |
| ISAav3 | IS5 | - | Acidovorax avenae | 28 | 4.6 |
| IS476 | IS3 | IS407 | Xanthomonas campestris | 28 | 4.6 |
| IS1415 | IS21 | - | Rhodococcus erythropolis | 28 | 4.6 |
| IS1245 | IS256 | - | Mycobacterium avium | 28 | 4.6 |
>ISAzo14
Length = 1925
Score = 34.2 bits (17), Expect = 0.075
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 130 catcgacctgctcggcg 146
|||||||||||||||||
Sbjct: 287 catcgacctgctcggcg 271
Score = 28.2 bits (14), Expect = 4.6
Identities = 20/22 (90%)
Strand = Plus / Minus
Query: 117 ccggcggccagcgcatcgacct 138
|||||| ||| |||||||||||
Sbjct: 675 ccggcgaccaccgcatcgacct 654
>ISKpn23
Length = 1671
Score = 32.2 bits (16), Expect = 0.30
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 16 ctcggcggtgccgcgc 31
||||||||||||||||
Sbjct: 1129 ctcggcggtgccgcgc 1114
>ISApr11
Length = 1667
Score = 32.2 bits (16), Expect = 0.30
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 16 ctcggcggtgccgcgc 31
||||||||||||||||
Sbjct: 1125 ctcggcggtgccgcgc 1110
>IS1247
Length = 1672
Score = 32.2 bits (16), Expect = 0.30
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 16 ctcggcggtgccgcgc 31
||||||||||||||||
Sbjct: 1130 ctcggcggtgccgcgc 1115
>IS1071
Length = 3201
Score = 32.2 bits (16), Expect = 0.30
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 126 agcgcatcgacctgct 141
||||||||||||||||
Sbjct: 828 agcgcatcgacctgct 843
>ISNov1
Length = 2277
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 121 cggccagcgcatcga 135
|||||||||||||||
Sbjct: 1804 cggccagcgcatcga 1790
>ISPfr16
Length = 1234
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 132 tcgacctgctcggcg 146
|||||||||||||||
Sbjct: 890 tcgacctgctcggcg 876
>ISAar39
Length = 1433
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 121 cggccagcgcatcga 135
|||||||||||||||
Sbjct: 194 cggccagcgcatcga 208
>ISRssp9
Length = 1716
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 16 ctcggcggtgccgcg 30
|||||||||||||||
Sbjct: 1154 ctcggcggtgccgcg 1140
>ISApr9
Length = 1668
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 16 ctcggcggtgccgcg 30
|||||||||||||||
Sbjct: 1126 ctcggcggtgccgcg 1112
>ISMex33
Length = 1318
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 74 gccgacgctgccgac 88
|||||||||||||||
Sbjct: 1051 gccgacgctgccgac 1037
>ISAzo12
Length = 3075
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 121 cggccagcgcatcga 135
|||||||||||||||
Sbjct: 1746 cggccagcgcatcga 1732
>ISRhsp5
Length = 2528
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 178 cgacctcaaccaggc 192
|||||||||||||||
Sbjct: 1024 cgacctcaaccaggc 1010
>ISMno4
Length = 1385
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 132 tcgacctgctcggcg 146
|||||||||||||||
Sbjct: 375 tcgacctgctcggcg 361
>ISRba4
Length = 1543
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 145 cgtcaagaagggcga 159
|||||||||||||||
Sbjct: 398 cgtcaagaagggcga 412
>ISMt1
Length = 969
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 37 cggcgggctgaccac 51
|||||||||||||||
Sbjct: 484 cggcgggctgaccac 498
>IS1650
Length = 898
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 37 cggcgggctgaccac 51
|||||||||||||||
Sbjct: 425 cggcgggctgaccac 439
>ISHala4
Length = 1280
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 123 gccagcgcatcgac 136
||||||||||||||
Sbjct: 738 gccagcgcatcgac 725
>ISHti12
Length = 1277
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 123 gccagcgcatcgac 136
||||||||||||||
Sbjct: 738 gccagcgcatcgac 725
>ISHla19
Length = 1851
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 171 tctggcacgacctc 184
||||||||||||||
Sbjct: 935 tctggcacgacctc 948
>ISHla16
Length = 1836
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 173 tggcacgacctcaa 186
||||||||||||||
Sbjct: 543 tggcacgacctcaa 530
>ISAs28
Length = 2626
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 153 agggcgatctgccg 166
||||||||||||||
Sbjct: 293 agggcgatctgccg 280
>ISAs27
Length = 2628
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 153 agggcgatctgccg 166
||||||||||||||
Sbjct: 293 agggcgatctgccg 280
>ISAha3
Length = 1039
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 67 cgccattgccgacg 80
||||||||||||||
Sbjct: 494 cgccattgccgacg 481
>ISNamo19
Length = 1897
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 171 tctggcacgacctc 184
||||||||||||||
Sbjct: 934 tctggcacgacctc 947
>ISRme20
Length = 1977
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 71 attgccgacgctgc 84
||||||||||||||
Sbjct: 541 attgccgacgctgc 554
>ISTni1
Length = 2377
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 123 gccagcgcatcgac 136
||||||||||||||
Sbjct: 2139 gccagcgcatcgac 2152
>ISNamo5
Length = 1277
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 123 gccagcgcatcgac 136
||||||||||||||
Sbjct: 738 gccagcgcatcgac 725
>ISHal1
Length = 1846
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 171 tctggcacgacctc 184
||||||||||||||
Sbjct: 930 tctggcacgacctc 943
>ISPsy30
Length = 5167
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 165 cgctgatctggcac 178
||||||||||||||
Sbjct: 3808 cgctgatctggcac 3821
>ISAjo1
Length = 1039
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 67 cgccattgccgacg 80
||||||||||||||
Sbjct: 494 cgccattgccgacg 481
>ISHwa13
Length = 1459
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 39 gcgggctgaccacg 52
||||||||||||||
Sbjct: 1239 gcgggctgaccacg 1252
>ISRsp17
Length = 1664
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 191 gccggcatggtctc 204
||||||||||||||
Sbjct: 276 gccggcatggtctc 289
>ISMtsp7
Length = 1316
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 154 gggcgatctgccgc 167
||||||||||||||
Sbjct: 655 gggcgatctgccgc 668
>ISMno13
Length = 2459
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 132 tcgacctgctcggc 145
||||||||||||||
Sbjct: 1119 tcgacctgctcggc 1106
>ISNosp1
Length = 1678
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 198 tggtctcgggccac 211
||||||||||||||
Sbjct: 148 tggtctcgggccac 161
>ISMdi27
Length = 2476
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 27 cgcgcatgctcggc 40
||||||||||||||
Sbjct: 1203 cgcgcatgctcggc 1190
>ISGdi14
Length = 1318
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 75 ccgacgctgccgac 88
||||||||||||||
Sbjct: 1050 ccgacgctgccgac 1037
>ISBad1
Length = 2525
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 56 gcggaactgcgcgc 69
||||||||||||||
Sbjct: 2137 gcggaactgcgcgc 2150
>ISButh1
Length = 1330
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 43 gctgaccacgccgg 56
||||||||||||||
Sbjct: 1071 gctgaccacgccgg 1084
>ISDsh1
Length = 1326
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 75 ccgacgctgccgac 88
||||||||||||||
Sbjct: 1058 ccgacgctgccgac 1045
>ISFsp6
Length = 1472
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 133 cgacctgctcggcg 146
||||||||||||||
Sbjct: 662 cgacctgctcggcg 675
>ISDra3
Length = 1065
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 116 accggcggccagcg 129
||||||||||||||
Sbjct: 318 accggcggccagcg 305
>ISRso11
Length = 1449
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 65 cgcgccattgccga 78
||||||||||||||
Sbjct: 136 cgcgccattgccga 123
>ISRru1
Length = 1345
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 74 gccgacgctgccga 87
||||||||||||||
Sbjct: 1077 gccgacgctgccga 1064
>ISHala1
Length = 1277
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 123 gccagcgcatcgac 136
||||||||||||||
Sbjct: 738 gccagcgcatcgac 725
>ISAav3
Length = 1321
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 16 ctcggcggtgccgc 29
||||||||||||||
Sbjct: 793 ctcggcggtgccgc 780
>IS476
Length = 1226
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 122 ggccagcgcatcga 135
||||||||||||||
Sbjct: 717 ggccagcgcatcga 704
>IS1415
Length = 2580
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 225 cgatccgcaccgtc 238
||||||||||||||
Sbjct: 851 cgatccgcaccgtc 838
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 18 cggcggtgccgcgc 31
||||||||||||||
Sbjct: 1227 cggcggtgccgcgc 1214
>IS1245
Length = 1414
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 225 cgatccgcaccgtc 238
||||||||||||||
Sbjct: 945 cgatccgcaccgtc 958
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_349_length_238_cov_0.770186_ID_5868
(238 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISStr1 | IS1380 | Salinispora tropica | 34 | 0.075 | |
| ISGbr1 | IS1380 | Gordonia bronchialis | 32 | 0.30 | |
| ISAtu6 | IS66 | - | Agrobacterium tumefaciens | 32 | 0.30 |
| IS1536 | IS607 | Mycobacterium tuberculosis | 32 | 0.30 | |
| IS1131 | IS66 | - | Agrobacterium tumefaciens | 32 | 0.30 |
| ISUnCu15 | IS5 | IS903 | Uncultured bacterium | 30 | 1.2 |
| ISAzo33 | IS630 | Azoarcus sp. | 30 | 1.2 | |
| ISBrsp4 | IS481 | Bradyrhizobium sp. | 30 | 1.2 | |
| TnAs3 | Tn3 | Aeromonas salmonicida | 28 | 4.6 | |
| ISPa56 | IS3 | IS2 | Pseudomonas aeruginosa | 28 | 4.6 |
| ISNma20 | IS607 | Natrialba magadii | 28 | 4.6 | |
| ISBj11 | IS21 | Bradyrhizobium japonicum | 28 | 4.6 | |
| ISPebe1 | IS256 | Pelagibaca bermudensis | 28 | 4.6 | |
| ISRhba5 | IS5 | IS903 | Rhodobacterales bacterium | 28 | 4.6 |
| ISShes11 | Tn3 | Shewanella sp. | 28 | 4.6 | |
| ISPpa7 | IS66 | Paracoccus pantotrophus | 28 | 4.6 | |
| ISCARN45 | IS256 | Metagenomic data from CARNOULES | 28 | 4.6 | |
| ISThsp7 | IS1634 | Thiomonas sp. | 28 | 4.6 | |
| ISFsp5 | IS4 | IS4 | Frankia sp. | 28 | 4.6 |
| ISXo5 | IS1595 | IS1595 | Xanthomonas oryzae | 28 | 4.6 |
| ISXc4 | Tn3 | - | Xanthomonas campestris | 28 | 4.6 |
| ISSco2 | IS481 | Streptomyces coelicolor | 28 | 4.6 | |
| ISRsp2 | IS21 | - | Rhizobium sp. | 28 | 4.6 |
>ISStr1
Length = 1664
Score = 34.2 bits (17), Expect = 0.075
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 89 gggccgatgcgctcacc 105
|||||||||||||||||
Sbjct: 1458 gggccgatgcgctcacc 1474
>ISGbr1
Length = 1645
Score = 32.2 bits (16), Expect = 0.30
Identities = 23/24 (95%), Gaps = 1/24 (4%)
Strand = Plus / Plus
Query: 44 gtggtgccggtg-tggcgctggcc 66
|||||||||||| |||||||||||
Sbjct: 192 gtggtgccggtgatggcgctggcc 215
>ISAtu6
Length = 2798
Score = 32.2 bits (16), Expect = 0.30
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 93 cgatgcgctcaccgcc 108
||||||||||||||||
Sbjct: 2285 cgatgcgctcaccgcc 2270
>IS1536
Length = 1415
Score = 32.2 bits (16), Expect = 0.30
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 134 ttgccgtcgcgcttgc 149
||||||||||||||||
Sbjct: 1038 ttgccgtcgcgcttgc 1023
>IS1131
Length = 2773
Score = 32.2 bits (16), Expect = 0.30
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 93 cgatgcgctcaccgcc 108
||||||||||||||||
Sbjct: 2263 cgatgcgctcaccgcc 2248
>ISUnCu15
Length = 1053
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 71 gtgccgatctcttcg 85
|||||||||||||||
Sbjct: 638 gtgccgatctcttcg 624
>ISAzo33
Length = 1100
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 104 ccgccgttggcgaag 118
|||||||||||||||
Sbjct: 220 ccgccgttggcgaag 206
>ISBrsp4
Length = 1268
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 148 gctctcgacttcgat 162
|||||||||||||||
Sbjct: 948 gctctcgacttcgat 962
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 4 cggcacatcgaagt 17
||||||||||||||
Sbjct: 968 cggcacatcgaagt 955
>TnAs3
Length = 18735
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 55 gtggcgctggccac 68
||||||||||||||
Sbjct: 16570 gtggcgctggccac 16583
>ISPa56
Length = 1359
Score = 28.2 bits (14), Expect = 4.6
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 25 ttcgggccagaccttgac 42
||||||||||||| ||||
Sbjct: 834 ttcgggccagaccgtgac 851
>ISNma20
Length = 2469
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 9 catcgaagtatttc 22
||||||||||||||
Sbjct: 858 catcgaagtatttc 845
>ISBj11
Length = 2649
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 135 tgccgtcgcgcttg 148
||||||||||||||
Sbjct: 1203 tgccgtcgcgcttg 1216
>ISPebe1
Length = 1363
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 82 ttcgagcgggccga 95
||||||||||||||
Sbjct: 1318 ttcgagcgggccga 1305
>ISRhba5
Length = 1053
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 93 cgatgcgctcaccg 106
||||||||||||||
Sbjct: 895 cgatgcgctcaccg 882
>ISShes11
Length = 7669
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 55 gtggcgctggccac 68
||||||||||||||
Sbjct: 5504 gtggcgctggccac 5517
>ISPpa7
Length = 2731
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 40 gaccgtggtgccgg 53
||||||||||||||
Sbjct: 334 gaccgtggtgccgg 347
>ISCARN45
Length = 1430
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 1 gcgcggcacatcga 14
||||||||||||||
Sbjct: 356 gcgcggcacatcga 343
>ISThsp7
Length = 1920
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 51 cggtgtggcgctgg 64
||||||||||||||
Sbjct: 1735 cggtgtggcgctgg 1722
>ISFsp5
Length = 1617
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 48 tgccggtgtggcgc 61
||||||||||||||
Sbjct: 145 tgccggtgtggcgc 158
>ISXo5
Length = 1058
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 58 gcgctggccacagg 71
||||||||||||||
Sbjct: 189 gcgctggccacagg 202
>ISXc4
Length = 6938
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 79 ctcttcgagcgggc 92
||||||||||||||
Sbjct: 1311 ctcttcgagcgggc 1324
>ISSco2
Length = 1964
Score = 28.2 bits (14), Expect = 4.6
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 125 cgatggaccttgccgtcg 142
||||||||||||| ||||
Sbjct: 1465 cgatggaccttgcggtcg 1448
>ISRsp2
Length = 2623
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 46 ggtgccggtgtggc 59
||||||||||||||
Sbjct: 2073 ggtgccggtgtggc 2060
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_350_length_238_cov_0.776398_ID_5870
(238 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISPpa7 | IS66 | Paracoccus pantotrophus | 38 | 0.005 | |
| ISMpo10 | Tn3 | Methylobacterium populi | 32 | 0.30 | |
| ISDau1 | IS1380 | Desulfobacterium autotrophicum | 32 | 0.30 | |
| ISSba14 | Tn3 | Shewanella baltica | 32 | 0.30 | |
| ISCbo1 | IS6 | Clostridium botulinum | 30 | 1.2 | |
| ISApr10 | IS256 | Alpha proteobacterium | 30 | 1.2 | |
| ISAnsp7 | IS4 | IS10 | Anaeromyxobacter sp. | 30 | 1.2 |
| ISSen2 | IS5 | IS427 | Salmonella enterica | 30 | 1.2 |
| ISAli11 | ISL3 | Azospirillum lipoferum | 30 | 1.2 | |
| ISCb2 | IS4 | IS231 | Clostridium beijerincki | 30 | 1.2 |
| IS1246 | IS5 | IS5 | Pseudomonas putida | 30 | 1.2 |
| ISSna1 | ISNCY | ISDol1 | Streptomyces natalensis | 28 | 4.6 |
| ISAeme11 | IS701 | ISAba11 | Aeromonas media | 28 | 4.6 |
| ISRtr5 | IS66 | Rhizobium tropici | 28 | 4.6 | |
| ISSm4 | ISL3 | Serratia marcescens | 28 | 4.6 | |
| ISGxy1 | IS3 | IS150 | Gluconacetobacter xylinus | 28 | 4.6 |
| ISSen4 | IS3 | IS407 | Salmonella enterica | 28 | 4.6 |
| ISRhsp7 | IS5 | Rhodobacter sphaeroides | 28 | 4.6 | |
| ISMaq6 | IS5 | IS5 | Marinobacter aquaeolei | 28 | 4.6 |
| ISMno5 | ISL3 | Methylobacterium nodulans | 28 | 4.6 | |
| ISAau5 | ISNCY | Arthrobacter aurescens | 28 | 4.6 | |
| ISAar45 | IS3 | IS3 | Arthrobacter arilaitensis | 28 | 4.6 |
| ISMdi11 | IS481 | Methylobacterium dichloromethanicum | 28 | 4.6 | |
| ISMdi4 | IS481 | Methylobacterium dichloromethanicum | 28 | 4.6 | |
| ISAcma28 | IS630 | Acaryochloris marina | 28 | 4.6 | |
| ISThsp18 | IS1182 | Thiomonas sp. | 28 | 4.6 | |
| ISAfe12 | IS21 | Acidithiobacillus ferrooxidans | 28 | 4.6 | |
| ISLxc2 | IS481 | Leifsonia xyli | 28 | 4.6 | |
| ISAzvi12 | IS110 | IS1111 | Azotobacter vinelandii | 28 | 4.6 |
| ISSod17 | IS3 | IS51 | Shewanella oneidensis | 28 | 4.6 |
| ISLbl2 | IS3 | IS407 | Leeuwenhoekiella blandensis | 28 | 4.6 |
| ISSpr2 | IS3 | IS407 | Serratia proteamaculans | 28 | 4.6 |
| ISYen3 | IS3 | IS407 | Yersinia enterocolitica | 28 | 4.6 |
| ISRaq1 | IS3 | IS407 | Rahnella aquatilis | 28 | 4.6 |
| ISGpr1 | IS3 | IS51 | Marine gamma proteobacterium | 28 | 4.6 |
| IS881 | IS5 | IS5 | Ralstonia eutropha | 28 | 4.6 |
| ISLxx1 | IS21 | Leifsonia xyli | 28 | 4.6 | |
| ISHsp1 | IS5 | IS5 | Halomonas sp. | 28 | 4.6 |
| ISRtr1 | IS256 | - | Rhizobium tropici | 28 | 4.6 |
| ISRfr1 | IS630 | - | Rhizobium fredii | 28 | 4.6 |
| ISEhe4 | IS3 | IS407 | Erwinia herbicola | 28 | 4.6 |
| IS1416 | IS3 | IS51 | Burkholderia glumae | 28 | 4.6 |
| IS1222 | IS3 | IS407 | Enterobacter agglomerans | 28 | 4.6 |
>ISPpa7
Length = 2731
Score = 38.2 bits (19), Expect = 0.005
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 188 tggcgctgccggcggatgc 206
|||||||||||||||||||
Sbjct: 297 tggcgctgccggcggatgc 315
>ISMpo10
Length = 4911
Score = 32.2 bits (16), Expect = 0.30
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 136 gccgacgccatcgtgctgtc 155
|||||||| |||||||||||
Sbjct: 3332 gccgacgctatcgtgctgtc 3351
>ISDau1
Length = 1639
Score = 32.2 bits (16), Expect = 0.30
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 211 gaagtgctccatcaaa 226
||||||||||||||||
Sbjct: 781 gaagtgctccatcaaa 766
>ISSba14
Length = 3815
Score = 32.2 bits (16), Expect = 0.30
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 188 tggcgctgccggcgga 203
||||||||||||||||
Sbjct: 2096 tggcgctgccggcgga 2081
>ISCbo1
Length = 1307
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 111 gcgtcagctcaagga 125
|||||||||||||||
Sbjct: 243 gcgtcagctcaagga 257
>ISApr10
Length = 1366
Score = 30.2 bits (15), Expect = 1.2
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 185 tcgtggcgctgccggcgga 203
||||||||||| |||||||
Sbjct: 493 tcgtggcgctgtcggcgga 511
>ISAnsp7
Length = 1579
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 180 cgagatcgtggcgct 194
|||||||||||||||
Sbjct: 891 cgagatcgtggcgct 905
>ISSen2
Length = 846
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 189 ggcgctgccggcgga 203
|||||||||||||||
Sbjct: 554 ggcgctgccggcgga 568
>ISAli11
Length = 1739
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 174 tggtgtcgagatcgt 188
|||||||||||||||
Sbjct: 681 tggtgtcgagatcgt 695
>ISCb2
Length = 1523
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 116 agctcaaggaagagc 130
|||||||||||||||
Sbjct: 1000 agctcaaggaagagc 1014
>IS1246
Length = 1275
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 17 agccatgaagaagcg 31
|||||||||||||||
Sbjct: 72 agccatgaagaagcg 86
>ISSna1
Length = 1560
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 169 gacggtggtgtcga 182
||||||||||||||
Sbjct: 549 gacggtggtgtcga 536
>ISAeme11
Length = 1108
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 72 cgtcaaacgctatt 85
||||||||||||||
Sbjct: 1073 cgtcaaacgctatt 1060
>ISRtr5
Length = 2577
Score = 28.2 bits (14), Expect = 4.6
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 116 agctcaaggaagagctgg 133
||||| ||||||||||||
Sbjct: 1014 agctcgaggaagagctgg 1031
>ISSm4
Length = 9109
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 184 atcgtggcgctgcc 197
||||||||||||||
Sbjct: 1306 atcgtggcgctgcc 1319
>ISGxy1
Length = 1313
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 134 gcgccgacgccatc 147
||||||||||||||
Sbjct: 1179 gcgccgacgccatc 1192
>ISSen4
Length = 1221
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 19 ccatgaagaagcgt 32
||||||||||||||
Sbjct: 70 ccatgaagaagcgt 83
>ISRhsp7
Length = 1397
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 130 ctgggcgccgacgc 143
||||||||||||||
Sbjct: 1236 ctgggcgccgacgc 1223
>ISMaq6
Length = 1519
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 169 gacggtggtgtcga 182
||||||||||||||
Sbjct: 571 gacggtggtgtcga 558
>ISMno5
Length = 1728
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 134 gcgccgacgccatc 147
||||||||||||||
Sbjct: 949 gcgccgacgccatc 962
>ISAau5
Length = 3989
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 206 cggtcgaagtgctc 219
||||||||||||||
Sbjct: 621 cggtcgaagtgctc 634
>ISAar45
Length = 1280
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 203 atgcggtcgaagtg 216
||||||||||||||
Sbjct: 37 atgcggtcgaagtg 24
>ISMdi11
Length = 1053
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 185 tcgtggcgctgccg 198
||||||||||||||
Sbjct: 84 tcgtggcgctgccg 71
>ISMdi4
Length = 1053
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 185 tcgtggcgctgccg 198
||||||||||||||
Sbjct: 84 tcgtggcgctgccg 71
>ISAcma28
Length = 1130
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 79 cgctattttgccca 92
||||||||||||||
Sbjct: 573 cgctattttgccca 586
>ISThsp18
Length = 1330
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 39 gatcgggccgatgg 52
||||||||||||||
Sbjct: 1055 gatcgggccgatgg 1042
>ISAfe12
Length = 2660
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 109 ctgcgtcagctcaa 122
||||||||||||||
Sbjct: 1835 ctgcgtcagctcaa 1848
>ISLxc2
Length = 1113
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 127 gagctgggcgccga 140
||||||||||||||
Sbjct: 398 gagctgggcgccga 385
>ISAzvi12
Length = 1248
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 138 cgacgccatcgtgc 151
||||||||||||||
Sbjct: 688 cgacgccatcgtgc 701
>ISSod17
Length = 1226
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 114 tcagctcaaggaag 127
||||||||||||||
Sbjct: 905 tcagctcaaggaag 918
>ISLbl2
Length = 1216
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 80 gctattttgcccag 93
||||||||||||||
Sbjct: 1102 gctattttgcccag 1089
>ISSpr2
Length = 1221
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 19 ccatgaagaagcgt 32
||||||||||||||
Sbjct: 70 ccatgaagaagcgt 83
>ISYen3
Length = 1140
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 19 ccatgaagaagcgt 32
||||||||||||||
Sbjct: 70 ccatgaagaagcgt 83
>ISRaq1
Length = 1221
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 19 ccatgaagaagcgt 32
||||||||||||||
Sbjct: 70 ccatgaagaagcgt 83
>ISGpr1
Length = 1232
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 116 agctcaaggaagag 129
||||||||||||||
Sbjct: 886 agctcaaggaagag 899
>IS881
Length = 3033
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 186 cgtggcgctgccgg 199
||||||||||||||
Sbjct: 1196 cgtggcgctgccgg 1209
>ISLxx1
Length = 2205
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 188 tggcgctgccggcg 201
||||||||||||||
Sbjct: 928 tggcgctgccggcg 941
>ISHsp1
Length = 1518
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 169 gacggtggtgtcga 182
||||||||||||||
Sbjct: 571 gacggtggtgtcga 558
>ISRtr1
Length = 1364
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 138 cgacgccatcgtgc 151
||||||||||||||
Sbjct: 1158 cgacgccatcgtgc 1171
>ISRfr1
Length = 1136
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 142 gccatcgtgctgtc 155
||||||||||||||
Sbjct: 567 gccatcgtgctgtc 580
>ISEhe4
Length = 1221
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 19 ccatgaagaagcgt 32
||||||||||||||
Sbjct: 70 ccatgaagaagcgt 83
>IS1416
Length = 1322
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 12 aatcgagccatgaa 25
||||||||||||||
Sbjct: 42 aatcgagccatgaa 55
>IS1222
Length = 1221
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 19 ccatgaagaagcgt 32
||||||||||||||
Sbjct: 70 ccatgaagaagcgt 83
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_351_length_238_cov_1.06211_ID_5872
(238 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISCARN26 | IS110 | Metagenomic data from CARNOULES | 32 | 0.30 | |
| ISBth18 | ISNCY | Bacillus thuringiensis | 30 | 1.2 | |
| ISAzs21 | IS66 | Azospirillum sp. | 30 | 1.2 | |
| ISRpa9 | IS5 | IS5 | Rhodopseudomonas palustris | 30 | 1.2 |
| ISMyma7 | IS1380 | - | Mycobacterium marinum | 30 | 1.2 |
| ISVsa2 | IS66 | Aliivibrio salmonicida | 30 | 1.2 | |
| ISBcen14 | IS66 | Burkholderia cenocepacia | 30 | 1.2 | |
| ISAs24 | IS110 | IS1111 | Aeromonas salmonicida | 28 | 4.6 |
| ISBast1 | IS256 | IS1249 | Bifidobacterium asteroides | 28 | 4.6 |
| ISCARN100 | IS1595 | ISSod11 | Metagenomic data from CARNOULES | 28 | 4.6 |
| ISMae4 | IS5 | ISL2 | Microcystis aeruginosa | 28 | 4.6 |
>ISCARN26
Length = 1214
Score = 32.2 bits (16), Expect = 0.30
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 192 catcaccggcgggcgc 207
||||||||||||||||
Sbjct: 972 catcaccggcgggcgc 987
>ISBth18
Length = 996
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 28 tttgagtaaagcttt 42
|||||||||||||||
Sbjct: 240 tttgagtaaagcttt 226
>ISAzs21
Length = 2598
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 224 tgcggtggcgcgctg 238
|||||||||||||||
Sbjct: 1368 tgcggtggcgcgctg 1382
>ISRpa9
Length = 1539
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 157 gcaggagaaggcaat 171
|||||||||||||||
Sbjct: 625 gcaggagaaggcaat 639
>ISMyma7
Length = 1694
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 150 ccgcctggcaggaga 164
|||||||||||||||
Sbjct: 1285 ccgcctggcaggaga 1299
>ISVsa2
Length = 2315
Score = 30.2 bits (15), Expect = 1.2
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 111 aaataacgtttcttaacga 129
|||||||||||||| ||||
Sbjct: 1387 aaataacgtttcttgacga 1369
>ISBcen14
Length = 2516
Score = 30.2 bits (15), Expect = 1.2
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 203 ggcgcgatgggatactgga 221
||||||||||| |||||||
Sbjct: 1535 ggcgcgatgggctactgga 1553
>ISAs24
Length = 1394
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 65 gcacgccggatcct 78
||||||||||||||
Sbjct: 606 gcacgccggatcct 619
>ISBast1
Length = 1357
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 190 ctcatcaccggcgg 203
||||||||||||||
Sbjct: 587 ctcatcaccggcgg 600
>ISCARN100
Length = 1111
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 200 gcgggcgcgatggg 213
||||||||||||||
Sbjct: 177 gcgggcgcgatggg 190
>ISMae4
Length = 1218
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 29 ttgagtaaagcttt 42
||||||||||||||
Sbjct: 464 ttgagtaaagcttt 451
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_352_length_237_cov_0.9125_ID_5874
(237 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISStau4 | IS66 | ISBst12 | Stigmatella aurantiaca | 38 | 0.005 |
| ISHvo21 | ISH3 | Haloferax volcanii | 32 | 0.30 | |
| ISHvo20 | ISH3 | Haloferax volcanii | 32 | 0.30 | |
| ISHla5 | ISH3 | Halorubrum lacusprofundi | 32 | 0.30 | |
| ISHla1 | ISH3 | Halorubrum lacusprofundi | 32 | 0.30 | |
| ISRm10-1 | IS630 | - | Sinorhizobium meliloti | 32 | 0.30 |
| ISH51 | ISH3 | Haloferax volcanii | 32 | 0.30 | |
| ISH3C | ISH3 | Halobacterium sp. | 32 | 0.30 | |
| ISH27-3 | ISH3 | Halobacterium salinarum | 32 | 0.30 | |
| ISH27-2 | ISH3 | - | Halobacterium salinarum | 32 | 0.30 |
| ISRma1 | ISKra4 | ISKra4 | Rhodopirellula maiorica | 30 | 1.2 |
| ISRm16 | IS4 | IS4Sa | Sinorhizobium meliloti | 30 | 1.2 |
| ISMpa1 | IS110 | Mycobacterium avium | 30 | 1.2 | |
| ISRso19 | IS21 | - | Ralstonia solanacearum | 30 | 1.2 |
| ISMno21 | IS630 | Methylobacterium nodulans | 28 | 4.6 | |
| ISSpwi2 | IS256 | Sphingomonas wittichii | 28 | 4.6 | |
| ISAtsp2 | IS1634 | Arthrospira sp. | 28 | 4.6 | |
| ISAzs32 | IS110 | IS1111 | Azospirillum sp. | 28 | 4.6 |
| ISAzs3 | IS1380 | Azospirillum sp. | 28 | 4.6 | |
| ISPaes3 | IS256 | Paracoccus aestuarii | 28 | 4.6 | |
| ISRxy1 | IS1182 | Rubrobacter xylanophilus | 28 | 4.6 | |
| ISMra5 | IS5 | IS427 | Methylobacterium radiotolerans | 28 | 4.6 |
| ISCARN48 | IS66 | Metagenomic data from CARNOULES | 28 | 4.6 | |
| ISAli16 | IS110 | Azospirillum lipoferum | 28 | 4.6 | |
| ISJsp1 | IS3 | IS51 | Janthinobacterium sp. | 28 | 4.6 |
| ISBxe1 | IS3 | IS3 | Burkholderia xenovorans | 28 | 4.6 |
| ISRsp6 | IS4 | IS4Sa | Rhizobium sp. | 28 | 4.6 |
| ISNpe1 | IS701 | Natrinema pellirubrum | 28 | 4.6 | |
| IS1631 | IS21 | - | Bradyrhizobium japonicum | 28 | 4.6 |
| IS1535 | IS607 | Mycobacterium tuberculosis | 28 | 4.6 | |
| IS1404 | IS3 | IS407 | Xanthomonas campestris | 28 | 4.6 |
| IS1271 | IS4 | IS4 | Enterobacter agglomerans | 28 | 4.6 |
| IS1245 | IS256 | - | Mycobacterium avium | 28 | 4.6 |
>ISStau4
Length = 1579
Score = 38.2 bits (19), Expect = 0.005
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 200 tgcctttccaggcgcgcagcgcc 222
|||||||||| ||||||||||||
Sbjct: 569 tgcctttccacgcgcgcagcgcc 591
>ISHvo21
Length = 1402
Score = 32.2 bits (16), Expect = 0.30
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 37 gacggcccgacgcacc 52
||||||||||||||||
Sbjct: 1178 gacggcccgacgcacc 1163
>ISHvo20
Length = 1399
Score = 32.2 bits (16), Expect = 0.30
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 37 gacggcccgacgcacc 52
||||||||||||||||
Sbjct: 1175 gacggcccgacgcacc 1160
>ISHla5
Length = 1397
Score = 32.2 bits (16), Expect = 0.30
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 37 gacggcccgacgcacc 52
||||||||||||||||
Sbjct: 1175 gacggcccgacgcacc 1160
>ISHla1
Length = 1399
Score = 32.2 bits (16), Expect = 0.30
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 37 gacggcccgacgcacc 52
||||||||||||||||
Sbjct: 1175 gacggcccgacgcacc 1160
>ISRm10-1
Length = 1042
Score = 32.2 bits (16), Expect = 0.30
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 148 gccatcgagcgcgccg 163
||||||||||||||||
Sbjct: 811 gccatcgagcgcgccg 826
>ISH51
Length = 1398
Score = 32.2 bits (16), Expect = 0.30
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 37 gacggcccgacgcacc 52
||||||||||||||||
Sbjct: 1175 gacggcccgacgcacc 1160
>ISH3C
Length = 1389
Score = 32.2 bits (16), Expect = 0.30
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 37 gacggcccgacgcacc 52
||||||||||||||||
Sbjct: 1175 gacggcccgacgcacc 1160
>ISH27-3
Length = 1389
Score = 32.2 bits (16), Expect = 0.30
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 37 gacggcccgacgcacc 52
||||||||||||||||
Sbjct: 1175 gacggcccgacgcacc 1160
>ISH27-2
Length = 1389
Score = 32.2 bits (16), Expect = 0.30
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 37 gacggcccgacgcacc 52
||||||||||||||||
Sbjct: 1175 gacggcccgacgcacc 1160
>ISRma1
Length = 1728
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 60 cgagcagaccgccac 74
|||||||||||||||
Sbjct: 412 cgagcagaccgccac 426
>ISRm16
Length = 1299
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 28 ctcggcgaagacggc 42
|||||||||||||||
Sbjct: 406 ctcggcgaagacggc 392
>ISMpa1
Length = 1500
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 212 cgcgcagcgccgagc 226
|||||||||||||||
Sbjct: 721 cgcgcagcgccgagc 707
>ISRso19
Length = 1956
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 150 catcgagcgcgccga 164
|||||||||||||||
Sbjct: 1384 catcgagcgcgccga 1398
>ISMno21
Length = 1162
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 209 aggcgcgcagcgcc 222
||||||||||||||
Sbjct: 376 aggcgcgcagcgcc 363
>ISSpwi2
Length = 1322
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 59 tcgagcagaccgcc 72
||||||||||||||
Sbjct: 158 tcgagcagaccgcc 145
>ISAtsp2
Length = 1761
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 62 agcagaccgccacg 75
||||||||||||||
Sbjct: 1251 agcagaccgccacg 1264
>ISAzs32
Length = 1601
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 190 cgtcagaacctgcc 203
||||||||||||||
Sbjct: 712 cgtcagaacctgcc 699
>ISAzs3
Length = 1613
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 156 gcgcgccgacggcc 169
||||||||||||||
Sbjct: 792 gcgcgccgacggcc 805
>ISPaes3
Length = 1393
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 146 acgccatcgagcgc 159
||||||||||||||
Sbjct: 1137 acgccatcgagcgc 1150
>ISRxy1
Length = 1790
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 24 cggcctcggcgaag 37
||||||||||||||
Sbjct: 1181 cggcctcggcgaag 1168
>ISMra5
Length = 832
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 146 acgccatcgagcgc 159
||||||||||||||
Sbjct: 698 acgccatcgagcgc 711
>ISCARN48
Length = 2581
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 27 cctcggcgaagacg 40
||||||||||||||
Sbjct: 1329 cctcggcgaagacg 1342
>ISAli16
Length = 1153
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 24 cggcctcggcgaag 37
||||||||||||||
Sbjct: 467 cggcctcggcgaag 454
>ISJsp1
Length = 1312
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 150 catcgagcgcgccg 163
||||||||||||||
Sbjct: 83 catcgagcgcgccg 96
>ISBxe1
Length = 1282
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 153 cgagcgcgccgacg 166
||||||||||||||
Sbjct: 471 cgagcgcgccgacg 484
>ISRsp6
Length = 1277
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 155 agcgcgccgacggc 168
||||||||||||||
Sbjct: 873 agcgcgccgacggc 886
>ISNpe1
Length = 1277
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 43 ccgacgcaccaacc 56
||||||||||||||
Sbjct: 903 ccgacgcaccaacc 916
>IS1631
Length = 2712
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 142 gcgcacgccatcga 155
||||||||||||||
Sbjct: 1536 gcgcacgccatcga 1549
>IS1535
Length = 2300
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 62 agcagaccgccacg 75
||||||||||||||
Sbjct: 1438 agcagaccgccacg 1425
Score = 28.2 bits (14), Expect = 4.6
Identities = 20/22 (90%)
Strand = Plus / Minus
Query: 213 gcgcagcgccgagcagaccgcc 234
||||||||| |||||||||||
Sbjct: 1449 gcgcagcgcgtagcagaccgcc 1428
>IS1404
Length = 1203
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 133 gtcgcttgggcgca 146
||||||||||||||
Sbjct: 899 gtcgcttgggcgca 912
>IS1271
Length = 1414
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 190 cgtcagaacctgcc 203
||||||||||||||
Sbjct: 946 cgtcagaacctgcc 933
>IS1245
Length = 1414
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 110 cctgcgacaccacc 123
||||||||||||||
Sbjct: 662 cctgcgacaccacc 649
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_353_length_237_cov_0.9125_ID_5876
(237 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISHalsp1 | IS200/IS605 | IS1341 | Halorubrum sp. | 32 | 0.30 |
| ISHalh1 | IS200/IS605 | IS1341 | Halorubrum halophilum | 32 | 0.30 |
| ISAzs13 | ISL3 | Azospirillum sp. | 32 | 0.30 | |
| ISAli11 | ISL3 | Azospirillum lipoferum | 32 | 0.30 | |
| ISPa53 | IS110 | IS1111 | Pseudomonas aeruginosa | 30 | 1.2 |
| ISHla19 | IS200/IS605 | Halorubrum lacusprofundi | 28 | 4.6 | |
| ISNamo19 | IS200/IS605 | IS605 | Natronomonas moolapensis | 28 | 4.6 |
| ISHhu2 | IS200/IS605 | Halobacterium hubeiense | 28 | 4.6 | |
| ISHal1 | IS200/IS605 | Haloferax alexandrinus | 28 | 4.6 | |
| ISAzs17 | Tn3 | Azospirillum sp. | 28 | 4.6 | |
| ISStau7 | IS1182 | Stigmatella aurantiaca | 28 | 4.6 | |
| ISRsp9 | IS6 | Rhizhobium sp. | 28 | 4.6 | |
| ISCARN48 | IS66 | Metagenomic data from CARNOULES | 28 | 4.6 | |
| ISKpn13 | IS5 | IS5 | Klebsiella pneumoniae | 28 | 4.6 |
| ISAli10 | IS66 | Azospirillum lipoferum | 28 | 4.6 | |
| ISArch17 | IS1 | Uncultured archaeon | 28 | 4.6 | |
| ISMsm7 | IS3 | IS3 | Mycobacterium smegmatis | 28 | 4.6 |
| ISSmu1 | IS3 | IS150 | Streptococcus mutans | 28 | 4.6 |
| ISVsa10 | IS91 | Aliivibrio salmonicida | 28 | 4.6 | |
| ISCce2 | IS256 | Clostridium cellulolyticum | 28 | 4.6 | |
| ISAni1 | IS481 | - | Arthrobacter nicotinovorans | 28 | 4.6 |
| IS801 | IS91 | - | Pseudomonas syringae | 28 | 4.6 |
| IS1252 | IS30 | - | Enterococcus sp | 28 | 4.6 |
>ISHalsp1
Length = 1584
Score = 32.2 bits (16), Expect = 0.30
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 99 ccgacatgctcgaaac 114
||||||||||||||||
Sbjct: 1233 ccgacatgctcgaaac 1248
>ISHalh1
Length = 1470
Score = 32.2 bits (16), Expect = 0.30
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 99 ccgacatgctcgaaac 114
||||||||||||||||
Sbjct: 1119 ccgacatgctcgaaac 1134
>ISAzs13
Length = 1769
Score = 32.2 bits (16), Expect = 0.30
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 34 ggtcgcccagatgtcg 49
||||||||||||||||
Sbjct: 268 ggtcgcccagatgtcg 253
>ISAli11
Length = 1739
Score = 32.2 bits (16), Expect = 0.30
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 34 ggtcgcccagatgtcg 49
||||||||||||||||
Sbjct: 256 ggtcgcccagatgtcg 241
>ISPa53
Length = 1381
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 148 gatgcagcaacttca 162
|||||||||||||||
Sbjct: 295 gatgcagcaacttca 281
>ISHla19
Length = 1851
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 92 tttcaggccgacat 105
||||||||||||||
Sbjct: 1588 tttcaggccgacat 1601
>ISNamo19
Length = 1897
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 92 tttcaggccgacat 105
||||||||||||||
Sbjct: 1587 tttcaggccgacat 1600
>ISHhu2
Length = 1846
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 92 tttcaggccgacat 105
||||||||||||||
Sbjct: 1583 tttcaggccgacat 1596
>ISHal1
Length = 1846
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 92 tttcaggccgacat 105
||||||||||||||
Sbjct: 1583 tttcaggccgacat 1596
>ISAzs17
Length = 7252
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 96 aggccgacatgctc 109
||||||||||||||
Sbjct: 7108 aggccgacatgctc 7095
>ISStau7
Length = 1716
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 208 gctgctggagcgga 221
||||||||||||||
Sbjct: 493 gctgctggagcgga 506
>ISRsp9
Length = 818
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 86 cctgaatttcaggc 99
||||||||||||||
Sbjct: 773 cctgaatttcaggc 760
>ISCARN48
Length = 2581
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 61 gaacgccgagcgtc 74
||||||||||||||
Sbjct: 1214 gaacgccgagcgtc 1227
>ISKpn13
Length = 1148
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 14 gtgcatgacctgaa 27
||||||||||||||
Sbjct: 626 gtgcatgacctgaa 639
>ISAli10
Length = 2584
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 43 gatgtcgttgatgc 56
||||||||||||||
Sbjct: 2488 gatgtcgttgatgc 2475
>ISArch17
Length = 1183
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 28 aaacctggtcgccc 41
||||||||||||||
Sbjct: 735 aaacctggtcgccc 748
>ISMsm7
Length = 1280
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 88 tgaatttcaggccg 101
||||||||||||||
Sbjct: 1239 tgaatttcaggccg 1226
>ISSmu1
Length = 1436
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 153 agcaacttcagaaa 166
||||||||||||||
Sbjct: 451 agcaacttcagaaa 464
>ISVsa10
Length = 1545
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 2 tcggcgtttgtggt 15
||||||||||||||
Sbjct: 1475 tcggcgtttgtggt 1488
>ISCce2
Length = 1359
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 23 ctgaaaaacctggt 36
||||||||||||||
Sbjct: 157 ctgaaaaacctggt 170
>ISAni1
Length = 1075
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 63 acgccgagcgtcac 76
||||||||||||||
Sbjct: 34 acgccgagcgtcac 21
>IS801
Length = 1512
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 95 caggccgacatgct 108
||||||||||||||
Sbjct: 1012 caggccgacatgct 1025
>IS1252
Length = 1065
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 57 tcaagaacgccgag 70
||||||||||||||
Sbjct: 495 tcaagaacgccgag 508
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_354_length_237_cov_0.89375_ID_5878
(237 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISAs29 | IS21 | Aeromonas salmonicida | 32 | 0.30 | |
| ISRel19 | IS66 | Rhizobium etli | 30 | 1.2 | |
| ISBusp3 | IS5 | Burkholderia sp. | 30 | 1.2 | |
| ISMamg2 | IS3 | IS407 | Magnetospirillum magneticum | 30 | 1.2 |
| ISThsp18 | IS1182 | Thiomonas sp. | 30 | 1.2 | |
| ISCARN54 | IS3 | IS3 | Metagenomic data from CARNOULES | 30 | 1.2 |
| ISBusp2 | IS5 | IS5 | Burkholderia sp. | 30 | 1.2 |
| ISGsu3 | IS5 | Geobacter sulfurreducens | 30 | 1.2 | |
| ISPa42 | Tn3 | Pseudomonas aeruginosa | 30 | 1.2 | |
| IS1X3 | IS1 | - | Escherichia fergusonii | 30 | 1.2 |
| TnXo19 | Tn3 | Xanthomonas oryzae | 28 | 4.6 | |
| ISMdi14B | IS110 | IS1111 | Methylobacterium dichloromethanicum DM4 | 28 | 4.6 |
| ISRme20 | IS21 | Ralstonia metallidurans | 28 | 4.6 | |
| ISPa40 | Tn3 | Pseudomonas aeruginosa | 28 | 4.6 | |
| ISWosp5 | IS4 | IS231 | Wolbachia sp. | 28 | 4.6 |
| ISHla4 | IS5 | ISH1 | Halorubrum lacusprofundi | 28 | 4.6 |
| ISRle11 | IS1182 | Rhizobium leguminosarum | 28 | 4.6 | |
| ISNml3 | IS1182 | Nakamurella multipartita | 28 | 4.6 | |
| ISGau3 | IS3 | IS51 | Gemmatimonas aurantiaca | 28 | 4.6 |
| ISRsp5 | IS5 | Rhizobium sp. | 28 | 4.6 | |
| ISMtsp8 | IS21 | Methylobacterium sp. | 28 | 4.6 | |
| ISBli4 | IS1380 | Brevibacterium linens | 28 | 4.6 | |
| ISMdi14 | IS110 | IS1111 | Methylobacterium dichloromethanicum | 28 | 4.6 |
| ISStma11 | ISL3 | Stenotrophomonas maltophilia | 28 | 4.6 | |
| ISMex22 | Tn3 | Methylobacterium extorquens | 28 | 4.6 | |
| ISAzo12 | IS21 | Azoarcus sp. | 28 | 4.6 | |
| ISEc23 | IS66 | Escherichia coli | 28 | 4.6 | |
| ISXc8 | IS3 | IS3 | Xanthomonas campestris | 28 | 4.6 |
| IS4321 | IS110 | IS1111 | Enterobacter aerogenes | 28 | 4.6 |
| IS5075 | IS110 | IS1111 | Escherichia coli | 28 | 4.6 |
| ISRso6 | IS21 | - | Ralstonia solanacearum | 28 | 4.6 |
| IS4321R | IS110 | IS1111 | Enterobacter aerogenes | 28 | 4.6 |
| IS4321L | IS110 | IS1111 | Enterobacter aerogenes | 28 | 4.6 |
| IS1539 | IS607 | Mycobacterium tuberculosis | 28 | 4.6 | |
| IS292 | IS66 | - | Agrobacterium sp | 28 | 4.6 |
>ISAs29
Length = 2613
Score = 32.2 bits (16), Expect = 0.30
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 38 gcgacaccatgggcaccgtg 57
||||||| ||||||||||||
Sbjct: 696 gcgacacgatgggcaccgtg 677
>ISRel19
Length = 2798
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 91 ctgttcagcctcggc 105
|||||||||||||||
Sbjct: 1138 ctgttcagcctcggc 1124
>ISBusp3
Length = 1349
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 207 cggcagcgcgatcga 221
|||||||||||||||
Sbjct: 958 cggcagcgcgatcga 972
>ISMamg2
Length = 1486
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 28 ggccgcatgcgcgac 42
|||||||||||||||
Sbjct: 804 ggccgcatgcgcgac 818
>ISThsp18
Length = 1330
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 207 cggcagcgcgatcga 221
|||||||||||||||
Sbjct: 944 cggcagcgcgatcga 958
>ISCARN54
Length = 1624
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 153 gagcaacgcggtcgc 167
|||||||||||||||
Sbjct: 271 gagcaacgcggtcgc 285
>ISBusp2
Length = 1349
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 207 cggcagcgcgatcga 221
|||||||||||||||
Sbjct: 958 cggcagcgcgatcga 972
>ISGsu3
Length = 1343
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 148 aagctgagcaacgcg 162
|||||||||||||||
Sbjct: 643 aagctgagcaacgcg 657
>ISPa42
Length = 16941
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 17 gcacgctgctcggcc 31
|||||||||||||||
Sbjct: 6318 gcacgctgctcggcc 6304
>IS1X3
Length = 769
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 165 cgccaccgattttga 179
|||||||||||||||
Sbjct: 703 cgccaccgattttga 689
>TnXo19
Length = 18767
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 27 cggccgcatgcgcg 40
||||||||||||||
Sbjct: 840 cggccgcatgcgcg 827
>ISMdi14B
Length = 1315
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 69 tgccggcagcgact 82
||||||||||||||
Sbjct: 432 tgccggcagcgact 419
>ISRme20
Length = 1977
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 216 gatcgacacgatgg 229
||||||||||||||
Sbjct: 1143 gatcgacacgatgg 1156
>ISPa40
Length = 6592
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 27 cggccgcatgcgcg 40
||||||||||||||
Sbjct: 2706 cggccgcatgcgcg 2693
>ISWosp5
Length = 1435
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 86 aatacctgttcagc 99
||||||||||||||
Sbjct: 1040 aatacctgttcagc 1027
>ISHla4
Length = 1804
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 156 caacgcggtcgcca 169
||||||||||||||
Sbjct: 1346 caacgcggtcgcca 1359
>ISRle11
Length = 1527
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 131 tgacgctcgacagc 144
||||||||||||||
Sbjct: 97 tgacgctcgacagc 110
>ISNml3
Length = 1798
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 158 acgcggtcgccacc 171
||||||||||||||
Sbjct: 518 acgcggtcgccacc 531
>ISGau3
Length = 1253
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 212 gcgcgatcgacacg 225
||||||||||||||
Sbjct: 148 gcgcgatcgacacg 135
>ISRsp5
Length = 1320
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 114 tgcgcaagacggca 127
||||||||||||||
Sbjct: 960 tgcgcaagacggca 973
>ISMtsp8
Length = 2371
Score = 28.2 bits (14), Expect = 4.6
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 154 agcaacgcggtcgccacc 171
|||| |||||||||||||
Sbjct: 2113 agcagcgcggtcgccacc 2096
>ISBli4
Length = 1713
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 177 tgacggtgtcgtcg 190
||||||||||||||
Sbjct: 580 tgacggtgtcgtcg 567
>ISMdi14
Length = 1316
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 69 tgccggcagcgact 82
||||||||||||||
Sbjct: 433 tgccggcagcgact 420
>ISStma11
Length = 4621
Score = 28.2 bits (14), Expect = 4.6
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 125 gcacgttgacgctcgaca 142
||||| ||||||||||||
Sbjct: 1853 gcacgctgacgctcgaca 1836
>ISMex22
Length = 3864
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 191 cctcactcggcgcc 204
||||||||||||||
Sbjct: 446 cctcactcggcgcc 433
>ISAzo12
Length = 3075
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 203 cctacggcagcgcg 216
||||||||||||||
Sbjct: 1609 cctacggcagcgcg 1622
>ISEc23
Length = 2532
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 173 attttgacggtgtc 186
||||||||||||||
Sbjct: 674 attttgacggtgtc 661
>ISXc8
Length = 1227
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 28 ggccgcatgcgcga 41
||||||||||||||
Sbjct: 540 ggccgcatgcgcga 553
>IS4321
Length = 1327
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 168 caccgattttgacg 181
||||||||||||||
Sbjct: 1302 caccgattttgacg 1289
>IS5075
Length = 1327
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 168 caccgattttgacg 181
||||||||||||||
Sbjct: 1302 caccgattttgacg 1289
>ISRso6
Length = 2064
Score = 28.2 bits (14), Expect = 4.6
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 135 gctcgacagcaccaagct 152
||||| ||||||||||||
Sbjct: 1750 gctcgtcagcaccaagct 1733
>IS4321R
Length = 1326
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 168 caccgattttgacg 181
||||||||||||||
Sbjct: 1301 caccgattttgacg 1288
>IS4321L
Length = 1327
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 168 caccgattttgacg 181
||||||||||||||
Sbjct: 1302 caccgattttgacg 1289
>IS1539
Length = 2092
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 10 gtcacccgcacgct 23
||||||||||||||
Sbjct: 1282 gtcacccgcacgct 1269
>IS292
Length = 2496
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 68 ttgccggcagcgac 81
||||||||||||||
Sbjct: 198 ttgccggcagcgac 185
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_355_length_237_cov_0.90625_ID_5880
(237 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISPpu15 | IS66 | Pseudomonas putida | 34 | 0.075 | |
| IS801 | IS91 | - | Pseudomonas syringae | 32 | 0.30 |
| IS1351 | IS3 | IS407 | Salmonella enteritidis | 32 | 0.30 |
| ISSysp4 | IS5 | IS5 | Synechococcus sp. | 30 | 1.2 |
| ISStau6 | ISAzo13 | Stigmatella aurantiaca | 30 | 1.2 | |
| ISBps2 | IS3 | IS3 | Burkholderia pseudomallei | 30 | 1.2 |
| ISLsp2 | IS1595 | ISPna2 | Leptospirillum sp. | 30 | 1.2 |
| ISAzo3 | ISAs1 | Azoarcus sp. | 30 | 1.2 | |
| ISHti1 | IS200/IS605 | IS605 | Halorhabdus tiamatea | 28 | 4.6 |
| ISNamo24 | IS200/IS605 | IS1341 | Natronomonas moolapensis | 28 | 4.6 |
| TnAs1 | Tn3 | Aeromonas salmonicida | 28 | 4.6 | |
| ISPko2 | IS256 | Paracoccus kondratievae | 28 | 4.6 | |
| ISMyma10 | IS3 | IS51 | Mycobacterium marinum | 28 | 4.6 |
| ISH36 | IS200/IS605 | Halobacterium salinarum | 28 | 4.6 | |
| ISSaci1 | ISAzo13 | Streptomyces acidiscabies | 28 | 4.6 | |
| ISHla8 | ISH3 | Halorubrum lacusprofundi | 28 | 4.6 | |
| ISMgi5 | IS256 | Mycobacterium gilvum | 28 | 4.6 | |
| ISPaes3 | IS256 | Paracoccus aestuarii | 28 | 4.6 | |
| ISHoc1 | IS1380 | Haliangium ochraceum | 28 | 4.6 | |
| ISMex17 | IS110 | Methylobacterium extorquens | 28 | 4.6 | |
| ISMdi20 | IS630 | Methylobacterium dichloromethanicum | 28 | 4.6 | |
| ISCARN106 | IS630 | Metagenomic data from CARNOULES | 28 | 4.6 | |
| ISAli20 | Tn3 | Azospirillum lipoferum | 28 | 4.6 | |
| ISAfe2 | IS256 | Acidithiobacillus ferrooxidans | 28 | 4.6 | |
| ISDds6 | IS701 | Deinococcus deserti | 28 | 4.6 | |
| ISGme3 | IS5 | IS5 | Geobacter metallireducens | 28 | 4.6 |
| ISHma7 | IS200/IS605 | Haloarcula marismortui | 28 | 4.6 | |
| IS1538 | IS607 | Mycobacterium tuberculosis | 28 | 4.6 | |
| IS1407 | IS256 | - | Mycobacterium celatum | 28 | 4.6 |
>ISPpu15
Length = 2041
Score = 34.2 bits (17), Expect = 0.075
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 74 tggctgcgaaaccgcgc 90
|||||||||||||||||
Sbjct: 925 tggctgcgaaaccgcgc 941
>IS801
Length = 1512
Score = 32.2 bits (16), Expect = 0.30
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 174 caggcctatcagcagg 189
||||||||||||||||
Sbjct: 985 caggcctatcagcagg 1000
>IS1351
Length = 1207
Score = 32.2 bits (16), Expect = 0.30
Identities = 22/24 (91%)
Strand = Plus / Minus
Query: 101 ggctcaggtcggtaaagatctgtt 124
|||||||||||| ||| |||||||
Sbjct: 302 ggctcaggtcggcaaacatctgtt 279
>ISSysp4
Length = 1724
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 55 cgggcctgacgctgg 69
|||||||||||||||
Sbjct: 805 cgggcctgacgctgg 791
>ISStau6
Length = 1304
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 10 gcacgcgcaccaact 24
|||||||||||||||
Sbjct: 294 gcacgcgcaccaact 280
>ISBps2
Length = 1233
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 52 agccgggcctgacgc 66
|||||||||||||||
Sbjct: 621 agccgggcctgacgc 607
>ISLsp2
Length = 1051
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 211 gcttcgacaatcccg 225
|||||||||||||||
Sbjct: 511 gcttcgacaatcccg 497
>ISAzo3
Length = 1282
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 53 gccgggcctgacgct 67
|||||||||||||||
Sbjct: 199 gccgggcctgacgct 185
>ISHti1
Length = 2131
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 42 gaaggccgtaagcc 55
||||||||||||||
Sbjct: 100 gaaggccgtaagcc 113
>ISNamo24
Length = 1424
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 134 acgccgcgtggcgc 147
||||||||||||||
Sbjct: 1005 acgccgcgtggcgc 1018
>TnAs1
Length = 6694
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 194 cgatgagctggtcg 207
||||||||||||||
Sbjct: 4564 cgatgagctggtcg 4577
>ISPko2
Length = 1396
Score = 28.2 bits (14), Expect = 4.6
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 198 gagctggtcgcctgcttc 215
|||| |||||||||||||
Sbjct: 1087 gagccggtcgcctgcttc 1070
>ISMyma10
Length = 1352
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 135 cgccgcgtggcgca 148
||||||||||||||
Sbjct: 415 cgccgcgtggcgca 428
>ISH36
Length = 1978
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 42 gaaggccgtaagcc 55
||||||||||||||
Sbjct: 43 gaaggccgtaagcc 56
>ISSaci1
Length = 1747
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 58 gcctgacgctgggt 71
||||||||||||||
Sbjct: 136 gcctgacgctgggt 149
>ISHla8
Length = 1460
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 87 gcgcagttcccgct 100
||||||||||||||
Sbjct: 812 gcgcagttcccgct 799
>ISMgi5
Length = 1470
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 98 gctggctcaggtcg 111
||||||||||||||
Sbjct: 150 gctggctcaggtcg 163
>ISPaes3
Length = 1393
Score = 28.2 bits (14), Expect = 4.6
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 198 gagctggtcgcctgcttc 215
|||| |||||||||||||
Sbjct: 1084 gagccggtcgcctgcttc 1067
>ISHoc1
Length = 1711
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 203 ggtcgcctgcttcg 216
||||||||||||||
Sbjct: 1391 ggtcgcctgcttcg 1404
>ISMex17
Length = 1132
Score = 28.2 bits (14), Expect = 4.6
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 191 ctgcgatgagctggtcgc 208
||||||||||| ||||||
Sbjct: 1011 ctgcgatgagccggtcgc 994
>ISMdi20
Length = 1056
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 86 cgcgcagttcccgc 99
||||||||||||||
Sbjct: 349 cgcgcagttcccgc 336
>ISCARN106
Length = 1148
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 141 gtggcgcaaacgct 154
||||||||||||||
Sbjct: 262 gtggcgcaaacgct 275
>ISAli20
Length = 3828
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 195 gatgagctggtcgc 208
||||||||||||||
Sbjct: 2709 gatgagctggtcgc 2696
>ISAfe2
Length = 1124
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 124 tccgcgatttacgc 137
||||||||||||||
Sbjct: 374 tccgcgatttacgc 361
>ISDds6
Length = 2207
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 91 agttcccgctggct 104
||||||||||||||
Sbjct: 884 agttcccgctggct 897
>ISGme3
Length = 1484
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 115 aagatctgttccgc 128
||||||||||||||
Sbjct: 140 aagatctgttccgc 153
>ISHma7
Length = 2008
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 42 gaaggccgtaagcc 55
||||||||||||||
Sbjct: 43 gaaggccgtaagcc 56
>IS1538
Length = 2090
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 144 gcgcaaacgctgga 157
||||||||||||||
Sbjct: 870 gcgcaaacgctgga 883
>IS1407
Length = 1422
Score = 28.2 bits (14), Expect = 4.6
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 193 gcgatgagctggtcgcct 210
||||||||||| ||||||
Sbjct: 1037 gcgatgagctgctcgcct 1054
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_356_length_237_cov_0.9_ID_5882
(237 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISCARN2 | ISL3 | Metagenomic data from CARNOULES | 36 | 0.019 | |
| IS231W | IS4 | IS231 | Bacillus thuringiensis | 34 | 0.075 |
| IS231V | IS4 | IS231 | Bacillus thuringiensis | 34 | 0.075 |
| ISAnsp7 | IS4 | IS10 | Anaeromyxobacter sp. | 32 | 0.30 |
| ISHwa27 | IS200/IS605 | Haloquadratum walsbyi | 30 | 1.2 | |
| ISPfl3 | IS1182 | Pseudomonas fluorescens | 30 | 1.2 | |
| ISThsp11 | IS3 | IS3 | Thiomonas sp. | 30 | 1.2 |
| ISButh2 | IS3 | IS2 | Burkholderia thailandensis | 30 | 1.2 |
| ISBcen6 | IS3 | IS2 | Burkholderia cenocepacia | 30 | 1.2 |
| ISRel26 | ISNCY | IS1202 | Rhizobium etli | 28 | 4.6 |
| ISTni2 | IS481 | Thioalkalivibrio nitratireducens | 28 | 4.6 | |
| ISAzs3 | IS1380 | Azospirillum sp. | 28 | 4.6 | |
| ISH30 | IS4 | ISH8 | Halobacterium salinarum | 28 | 4.6 |
| ISVbsp2 | IS5 | IS5 | Vibrio sp. | 28 | 4.6 |
| ISPrsp1 | IS1595 | ISSod11 | Parabacteroides sp. | 28 | 4.6 |
| ISArsp6 | Tn3 | Arthrobacter sp. | 28 | 4.6 | |
| ISAar7 | IS21 | Arthrobacter arilaitensis | 28 | 4.6 | |
| ISSyth1 | IS1182 | Symbiobacterium thermophilum | 28 | 4.6 | |
| ISDge4 | IS66 | ISBst12 | Deinococcus geothermalis | 28 | 4.6 |
| ISEc22 | IS66 | Escherichia coli | 28 | 4.6 | |
| ISGur5 | IS3 | IS3 | Geobacter uraniireducens | 28 | 4.6 |
| ISMasp1 | IS1634 | Magnetococcus sp. | 28 | 4.6 | |
| ISFsp3 | IS21 | Frankia sp. | 28 | 4.6 | |
| ISPst4 | IS3 | IS51 | Pseudomonas stutzeri | 28 | 4.6 |
| IS1096 | ISL3 | - | Mycobacterium smegmatis | 28 | 4.6 |
>ISCARN2
Length = 1303
Score = 36.2 bits (18), Expect = 0.019
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 151 gcggcaggccgctgctct 168
||||||||||||||||||
Sbjct: 1080 gcggcaggccgctgctct 1063
>IS231W
Length = 1964
Score = 34.2 bits (17), Expect = 0.075
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 120 gaaggtagagatatagt 136
|||||||||||||||||
Sbjct: 732 gaaggtagagatatagt 716
>IS231V
Length = 1964
Score = 34.2 bits (17), Expect = 0.075
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 120 gaaggtagagatatagt 136
|||||||||||||||||
Sbjct: 733 gaaggtagagatatagt 717
>ISAnsp7
Length = 1579
Score = 32.2 bits (16), Expect = 0.30
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 158 gccgctgctctggaag 173
||||||||||||||||
Sbjct: 489 gccgctgctctggaag 504
>ISHwa27
Length = 1488
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 17 agtcagggtcaagga 31
|||||||||||||||
Sbjct: 1333 agtcagggtcaagga 1347
>ISPfl3
Length = 1585
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 74 cagcgcacatccagc 88
|||||||||||||||
Sbjct: 1205 cagcgcacatccagc 1191
>ISThsp11
Length = 1814
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 134 agtcgcgcgccagca 148
|||||||||||||||
Sbjct: 1031 agtcgcgcgccagca 1017
>ISButh2
Length = 1336
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 135 gtcgcgcgccagcac 149
|||||||||||||||
Sbjct: 197 gtcgcgcgccagcac 211
>ISBcen6
Length = 1335
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 135 gtcgcgcgccagcac 149
|||||||||||||||
Sbjct: 196 gtcgcgcgccagcac 210
>ISRel26
Length = 1634
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 74 cagcgcacatccag 87
||||||||||||||
Sbjct: 1187 cagcgcacatccag 1174
>ISTni2
Length = 3451
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 149 ccgcggcaggccgc 162
||||||||||||||
Sbjct: 1535 ccgcggcaggccgc 1522
>ISAzs3
Length = 1613
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 142 gccagcaccgcggc 155
||||||||||||||
Sbjct: 913 gccagcaccgcggc 926
>ISH30
Length = 1654
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 34 gacggcgtgggaga 47
||||||||||||||
Sbjct: 1245 gacggcgtgggaga 1232
>ISVbsp2
Length = 1489
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 161 gctgctctggaagc 174
||||||||||||||
Sbjct: 818 gctgctctggaagc 831
>ISPrsp1
Length = 983
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 32 gagacggcgtggga 45
||||||||||||||
Sbjct: 568 gagacggcgtggga 581
>ISArsp6
Length = 26712
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 220 gtcagggctgaggt 233
||||||||||||||
Sbjct: 5152 gtcagggctgaggt 5165
>ISAar7
Length = 2983
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 147 caccgcggcaggcc 160
||||||||||||||
Sbjct: 2897 caccgcggcaggcc 2884
>ISSyth1
Length = 1527
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 161 gctgctctggaagc 174
||||||||||||||
Sbjct: 717 gctgctctggaagc 730
>ISDge4
Length = 1453
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 161 gctgctctggaagc 174
||||||||||||||
Sbjct: 1095 gctgctctggaagc 1108
>ISEc22
Length = 2454
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 217 tccgtcagggctga 230
||||||||||||||
Sbjct: 1930 tccgtcagggctga 1917
>ISGur5
Length = 1760
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 2 catctgggggcagc 15
||||||||||||||
Sbjct: 142 catctgggggcagc 155
>ISMasp1
Length = 1907
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 220 gtcagggctgaggt 233
||||||||||||||
Sbjct: 321 gtcagggctgaggt 308
>ISFsp3
Length = 2209
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 193 cccacgaagaatac 206
||||||||||||||
Sbjct: 1483 cccacgaagaatac 1496
>ISPst4
Length = 1312
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 166 tctggaagcagctg 179
||||||||||||||
Sbjct: 582 tctggaagcagctg 595
>IS1096
Length = 2259
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 7 gggggcagccagtc 20
||||||||||||||
Sbjct: 1513 gggggcagccagtc 1526
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_357_length_237_cov_0.85_ID_5884
(237 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISMsm4 | ISL3 | Mycobacterium smegmatis | 36 | 0.019 | |
| ISOan9 | IS256 | Octadecabacter antarcticus | 30 | 1.2 | |
| ISAzs12 | ISAs1 | Azospirillum sp. | 30 | 1.2 | |
| ISMra5 | IS5 | IS427 | Methylobacterium radiotolerans | 30 | 1.2 |
| ISDpr5 | IS1380 | Delta proteobacterium | 30 | 1.2 | |
| ISAar8 | IS1380 | Arthrobacter arilaitensis | 30 | 1.2 | |
| ISMlu1 | IS256 | Micrococcus luteus | 30 | 1.2 | |
| ISAeh1 | IS66 | Alkalilimnicola ehrlichei | 30 | 1.2 | |
| ISPa31 | IS3 | IS3 | Pseudomonas aeruginosa | 30 | 1.2 |
| IS1663 | IS110 | Bordetella pertussis | 30 | 1.2 | |
| TnAs3 | Tn3 | Aeromonas salmonicida | 28 | 4.6 | |
| TnAs2 | Tn3 | Aeromonas salmonicida | 28 | 4.6 | |
| ISPko5 | IS5 | IS427 | Paracoccus kondratievae | 28 | 4.6 |
| ISStu2 | ISAzo13 | Streptomyces turgidiscabies | 28 | 4.6 | |
| ISPa38 | Tn3 | Pseudomonas aeruginosa | 28 | 4.6 | |
| ISPpa6 | IS5 | IS427 | Paracoccus pantotrophus | 28 | 4.6 |
| ISShes11 | Tn3 | Shewanella sp. | 28 | 4.6 | |
| ISUnCu2 | IS5 | IS5 | Uncultured bacterium | 28 | 4.6 |
| ISArsp6 | Tn3 | Arthrobacter sp. | 28 | 4.6 | |
| ISCph8 | IS1380 | Chlorobium phaeobacteroides | 28 | 4.6 | |
| ISMva3 | IS1380 | Mycobacterium vanbaalenii | 28 | 4.6 | |
| ISMsm10 | IS1380 | Mycobacterium smegmatis | 28 | 4.6 | |
| ISPelu1 | IS1380 | Pelodictyon luteolum | 28 | 4.6 | |
| ISOan2 | IS1380 | Octadecabacter antarcticus | 28 | 4.6 | |
| ISStma10 | IS630 | Stenotrophomonas maltophilia | 28 | 4.6 | |
| ISThsp10 | IS21 | Thiomonas sp. | 28 | 4.6 | |
| ISCARN75 | IS701 | Metagenomic data from CARNOULES | 28 | 4.6 | |
| ISAzo15 | IS66 | Azoarcus sp. | 28 | 4.6 | |
| ISArch14 | IS66 | ISBst12 | uncultured archaeon | 28 | 4.6 |
| ISSso4 | IS21 | Shigella sonnei | 28 | 4.6 | |
| ISKpn6 | IS1182 | Klebsiella pneumoniae | 28 | 4.6 | |
| ISGur11 | IS481 | Geobacter uraniumreducens | 28 | 4.6 | |
| ISSusp1 | IS3 | IS51 | Sulfitobacter sp. | 28 | 4.6 |
| ISAav4 | IS3 | IS3 | Acidovorax avenae | 28 | 4.6 |
| IS1088 | IS30 | Cupriavidus necator | 28 | 4.6 | |
| ISSav4 | IS701 | Streptomyces avermitilis | 28 | 4.6 | |
| ISMyma2 | IS1380 | Mycobacterium marinum | 28 | 4.6 | |
| ISAli15 | IS66 | Azospirillum lipoferum | 28 | 4.6 | |
| ISPpu13 | IS66 | Pseudomonas putida | 28 | 4.6 | |
| ISXc4 | Tn3 | - | Xanthomonas campestris | 28 | 4.6 |
| ISRso1 | IS5 | - | Ralstonia solanacearum | 28 | 4.6 |
| IS654 | IS256 | - | Bacillus halodurans | 28 | 4.6 |
| IS1166 | IS256 | - | Rhodococcus sp. | 28 | 4.6 |
>ISMsm4
Length = 1458
Score = 36.2 bits (18), Expect = 0.019
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 97 cgatgccgagcaccgcca 114
||||||||||||||||||
Sbjct: 604 cgatgccgagcaccgcca 587
>ISOan9
Length = 1401
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 166 gcagatccagaccgg 180
|||||||||||||||
Sbjct: 301 gcagatccagaccgg 315
>ISAzs12
Length = 1196
Score = 30.2 bits (15), Expect = 1.2
Identities = 21/23 (91%)
Strand = Plus / Plus
Query: 7 cgaccaacaccggccacaccacc 29
|||||| |||| |||||||||||
Sbjct: 724 cgaccaccaccagccacaccacc 746
>ISMra5
Length = 832
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 88 ccgccagcacgatgc 102
|||||||||||||||
Sbjct: 571 ccgccagcacgatgc 557
>ISDpr5
Length = 1653
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 75 gccagcatgaccgcc 89
|||||||||||||||
Sbjct: 836 gccagcatgaccgcc 850
>ISAar8
Length = 1738
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 94 gcacgatgccgagca 108
|||||||||||||||
Sbjct: 1206 gcacgatgccgagca 1192
>ISMlu1
Length = 1413
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 67 ccccggtggccagca 81
|||||||||||||||
Sbjct: 687 ccccggtggccagca 673
>ISAeh1
Length = 2320
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 32 cagcagccagttcag 46
|||||||||||||||
Sbjct: 583 cagcagccagttcag 569
>ISPa31
Length = 1671
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 156 ccgagcaggtgcaga 170
|||||||||||||||
Sbjct: 352 ccgagcaggtgcaga 366
>IS1663
Length = 1225
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 36 agccagttcagcccc 50
|||||||||||||||
Sbjct: 678 agccagttcagcccc 692
>TnAs3
Length = 18735
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 158 gagcaggtgcagat 171
||||||||||||||
Sbjct: 5306 gagcaggtgcagat 5319
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 90 gccagcacgatgcc 103
||||||||||||||
Sbjct: 16160 gccagcacgatgcc 16147
>TnAs2
Length = 8650
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 90 gccagcacgatgcc 103
||||||||||||||
Sbjct: 6072 gccagcacgatgcc 6059
>ISPko5
Length = 851
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 3 tcggcgaccaacac 16
||||||||||||||
Sbjct: 587 tcggcgaccaacac 574
>ISStu2
Length = 1760
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 173 cagaccgggaagca 186
||||||||||||||
Sbjct: 37 cagaccgggaagca 24
>ISPa38
Length = 6455
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 90 gccagcacgatgcc 103
||||||||||||||
Sbjct: 3880 gccagcacgatgcc 3867
>ISPpa6
Length = 850
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 3 tcggcgaccaacac 16
||||||||||||||
Sbjct: 586 tcggcgaccaacac 573
>ISShes11
Length = 7669
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 90 gccagcacgatgcc 103
||||||||||||||
Sbjct: 5094 gccagcacgatgcc 5081
>ISUnCu2
Length = 1491
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 156 ccgagcaggtgcag 169
||||||||||||||
Sbjct: 828 ccgagcaggtgcag 841
>ISArsp6
Length = 26712
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 68 cccggtggccagca 81
||||||||||||||
Sbjct: 12806 cccggtggccagca 12793
>ISCph8
Length = 1755
Score = 28.2 bits (14), Expect = 4.6
Identities = 20/22 (90%)
Strand = Plus / Plus
Query: 96 acgatgccgagcaccgccatgg 117
||||||||||| | ||||||||
Sbjct: 587 acgatgccgagaagcgccatgg 608
>ISMva3
Length = 1658
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 23 caccaccatcagca 36
||||||||||||||
Sbjct: 662 caccaccatcagca 675
>ISMsm10
Length = 1661
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 23 caccaccatcagca 36
||||||||||||||
Sbjct: 663 caccaccatcagca 676
>ISPelu1
Length = 1742
Score = 28.2 bits (14), Expect = 4.6
Identities = 20/22 (90%)
Strand = Plus / Plus
Query: 96 acgatgccgagcaccgccatgg 117
||||||||||| | ||||||||
Sbjct: 587 acgatgccgagaagcgccatgg 608
>ISOan2
Length = 1655
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 111 gccatggccaactg 124
||||||||||||||
Sbjct: 1263 gccatggccaactg 1276
>ISStma10
Length = 1106
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 122 ctgcgggccaaaca 135
||||||||||||||
Sbjct: 624 ctgcgggccaaaca 637
>ISThsp10
Length = 2501
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 84 accgccgccagcac 97
||||||||||||||
Sbjct: 1451 accgccgccagcac 1438
>ISCARN75
Length = 1369
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 144 gccaccattgcgcc 157
||||||||||||||
Sbjct: 645 gccaccattgcgcc 632
>ISAzo15
Length = 2441
Score = 28.2 bits (14), Expect = 4.6
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 81 atgaccgccgccagcacg 98
|||||||||||| |||||
Sbjct: 1402 atgaccgccgccggcacg 1385
>ISArch14
Length = 1560
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 34 gcagccagttcagc 47
||||||||||||||
Sbjct: 852 gcagccagttcagc 839
>ISSso4
Length = 2638
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 89 cgccagcacgatgc 102
||||||||||||||
Sbjct: 634 cgccagcacgatgc 621
>ISKpn6
Length = 1540
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 97 cgatgccgagcacc 110
||||||||||||||
Sbjct: 919 cgatgccgagcacc 932
>ISGur11
Length = 1837
Score = 28.2 bits (14), Expect = 4.6
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 156 ccgagcaggtgcagatcc 173
||||||||||| ||||||
Sbjct: 1352 ccgagcaggtggagatcc 1369
>ISSusp1
Length = 1228
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 100 tgccgagcaccgcc 113
||||||||||||||
Sbjct: 349 tgccgagcaccgcc 362
>ISAav4
Length = 1308
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 86 cgccgccagcacga 99
||||||||||||||
Sbjct: 883 cgccgccagcacga 870
>IS1088
Length = 1103
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 101 gccgagcaccgcca 114
||||||||||||||
Sbjct: 795 gccgagcaccgcca 808
>ISSav4
Length = 1426
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 94 gcacgatgccgagc 107
||||||||||||||
Sbjct: 742 gcacgatgccgagc 755
>ISMyma2
Length = 1679
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 87 gccgccagcacgat 100
||||||||||||||
Sbjct: 1303 gccgccagcacgat 1290
>ISAli15
Length = 2658
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 86 cgccgccagcacga 99
||||||||||||||
Sbjct: 2078 cgccgccagcacga 2065
>ISPpu13
Length = 2370
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 33 agcagccagttcag 46
||||||||||||||
Sbjct: 381 agcagccagttcag 368
>ISXc4
Length = 6938
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 138 aaggtcgccaccat 151
||||||||||||||
Sbjct: 323 aaggtcgccaccat 310
>ISRso1
Length = 884
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 26 caccatcagcagcc 39
||||||||||||||
Sbjct: 517 caccatcagcagcc 504
>IS654
Length = 1384
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 194 cttcattcgccaca 207
||||||||||||||
Sbjct: 607 cttcattcgccaca 594
>IS1166
Length = 1469
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 82 tgaccgccgccagc 95
||||||||||||||
Sbjct: 1311 tgaccgccgccagc 1298
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_358_length_237_cov_1.21875_ID_5886
(237 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| IS1396 | ISL3 | - | Serratia marcescens | 32 | 0.30 |
| ISSav5 | IS481 | Streptomyces avermitilis | 30 | 1.2 | |
| ISAzo40 | IS1380 | Azoarcus sp. | 30 | 1.2 | |
| ISXc8 | IS3 | IS3 | Xanthomonas campestris | 30 | 1.2 |
| ISTvo3 | IS481 | Thermoplasma volcanium | 30 | 1.2 | |
| IS616 | IS1380 | - | Bacteroides fragilis | 30 | 1.2 |
| IS1188 | IS1380 | - | Bacteroides fragilis | 30 | 1.2 |
| ISMal1 | ISKra4 | ISAzba1 | Mesorhizobium alhagi | 28 | 4.6 |
| ISKpn15 | IS66 | ISBst12 | Klebsiella pneumonia | 28 | 4.6 |
| ISPa43 | Tn3 | Pseudomonas aeruginosa | 28 | 4.6 | |
| ISNph7 | IS200/IS605 | Natronomonas pharaonis | 28 | 4.6 | |
| ISRel16 | IS21 | Rhizobium etli | 28 | 4.6 | |
| ISAcfe1 | IS1182 | Acidimicrobium ferrooxidans | 28 | 4.6 | |
| ISRxy1 | IS1182 | Rubrobacter xylanophilus | 28 | 4.6 | |
| ISCph8 | IS1380 | Chlorobium phaeobacteroides | 28 | 4.6 | |
| ISPelu1 | IS1380 | Pelodictyon luteolum | 28 | 4.6 | |
| ISMex12 | IS110 | Methylobacterium extorquens | 28 | 4.6 | |
| ISAcma31 | IS630 | Acaryochloris marina | 28 | 4.6 | |
| ISThsp9 | Tn3 | Thiomonas sp. | 28 | 4.6 | |
| ISGdi9 | IS481 | Gluconacetobacter diazotrophicus | 28 | 4.6 | |
| ISMno4 | IS66 | ISBst12 | Methylobacterium nodulans | 28 | 4.6 |
| ISAli7 | IS256 | Azospirillum lipoferum | 28 | 4.6 | |
| ISAs8 | IS1 | Aeromonas salmonicida | 28 | 4.6 | |
| ISLxc1 | IS21 | Leifsonia xyli | 28 | 4.6 | |
| ISEc21 | IS110 | Escherichia coli | 28 | 4.6 | |
| ISApr4 | IS1595 | ISNwi1 | Alpha proteobacterium | 28 | 4.6 |
| ISBse1 | IS1595 | ISPna2 | Bacillus selenitireducens | 28 | 4.6 |
| ISSme1 | IS3 | IS407 | Sinorhizobium medicae | 28 | 4.6 |
| ISRel1 | IS4 | IS4Sa | Rhizobium etli | 28 | 4.6 |
| IS881 | IS5 | IS5 | Ralstonia eutropha | 28 | 4.6 |
| ISPal1 | IS5 | IS427 | Pseudomonas alcaligenes | 28 | 4.6 |
>IS1396
Length = 1771
Score = 32.2 bits (16), Expect = 0.30
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 9 agcagatgcagcagcg 24
||||||||||||||||
Sbjct: 1515 agcagatgcagcagcg 1500
>ISSav5
Length = 1953
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 1 gcccgccgagcagat 15
|||||||||||||||
Sbjct: 1662 gcccgccgagcagat 1676
>ISAzo40
Length = 1694
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 187 agcgcccccgccgga 201
|||||||||||||||
Sbjct: 1540 agcgcccccgccgga 1554
>ISXc8
Length = 1227
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 141 aagccttcgcaggcc 155
|||||||||||||||
Sbjct: 1042 aagccttcgcaggcc 1028
>ISTvo3
Length = 951
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 121 cttcacgaaagcgct 135
|||||||||||||||
Sbjct: 203 cttcacgaaagcgct 217
>IS616
Length = 1691
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 114 tcggcgccttcacga 128
|||||||||||||||
Sbjct: 1303 tcggcgccttcacga 1317
>IS1188
Length = 1691
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 114 tcggcgccttcacga 128
|||||||||||||||
Sbjct: 1303 tcggcgccttcacga 1317
>ISMal1
Length = 2308
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 57 gcaatccgctcgcc 70
||||||||||||||
Sbjct: 1843 gcaatccgctcgcc 1830
>ISKpn15
Length = 1534
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 103 cctcgaccgcatcg 116
||||||||||||||
Sbjct: 179 cctcgaccgcatcg 192
>ISPa43
Length = 19903
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 106 cgaccgcatcggcg 119
||||||||||||||
Sbjct: 642 cgaccgcatcggcg 655
>ISNph7
Length = 2020
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 160 ccggtggcgttgtt 173
||||||||||||||
Sbjct: 1371 ccggtggcgttgtt 1358
>ISRel16
Length = 2597
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 57 gcaatccgctcgcc 70
||||||||||||||
Sbjct: 1321 gcaatccgctcgcc 1308
>ISAcfe1
Length = 1772
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 106 cgaccgcatcggcg 119
||||||||||||||
Sbjct: 559 cgaccgcatcggcg 546
>ISRxy1
Length = 1790
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 19 gcagcgtgctcttg 32
||||||||||||||
Sbjct: 389 gcagcgtgctcttg 376
>ISCph8
Length = 1755
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 105 tcgaccgcatcggc 118
||||||||||||||
Sbjct: 920 tcgaccgcatcggc 907
>ISPelu1
Length = 1742
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 105 tcgaccgcatcggc 118
||||||||||||||
Sbjct: 920 tcgaccgcatcggc 907
>ISMex12
Length = 1418
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 109 ccgcatcggcgcct 122
||||||||||||||
Sbjct: 431 ccgcatcggcgcct 444
>ISAcma31
Length = 939
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 122 ttcacgaaagcgct 135
||||||||||||||
Sbjct: 269 ttcacgaaagcgct 256
>ISThsp9
Length = 6215
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 102 acctcgaccgcatc 115
||||||||||||||
Sbjct: 4259 acctcgaccgcatc 4272
>ISGdi9
Length = 1044
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 81 gaaagcgacacgtc 94
||||||||||||||
Sbjct: 560 gaaagcgacacgtc 573
>ISMno4
Length = 1385
Score = 28.2 bits (14), Expect = 4.6
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 102 acctcgaccgcatcggcg 119
||||||||||||| ||||
Sbjct: 936 acctcgaccgcataggcg 919
>ISAli7
Length = 1416
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 4 cgccgagcagatgc 17
||||||||||||||
Sbjct: 1023 cgccgagcagatgc 1036
>ISAs8
Length = 754
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 112 catcggcgccttca 125
||||||||||||||
Sbjct: 704 catcggcgccttca 717
>ISLxc1
Length = 3533
Score = 28.2 bits (14), Expect = 4.6
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 26 gctcttgccggagccgga 43
||||||||||| ||||||
Sbjct: 3108 gctcttgccggtgccgga 3091
>ISEc21
Length = 1374
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 125 acgaaagcgcttcg 138
||||||||||||||
Sbjct: 1003 acgaaagcgcttcg 1016
>ISApr4
Length = 3691
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 132 cgcttcgacaagcc 145
||||||||||||||
Sbjct: 1614 cgcttcgacaagcc 1627
>ISBse1
Length = 1635
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 134 cttcgacaagcctt 147
||||||||||||||
Sbjct: 349 cttcgacaagcctt 336
>ISSme1
Length = 1271
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 4 cgccgagcagatgc 17
||||||||||||||
Sbjct: 273 cgccgagcagatgc 286
>ISRel1
Length = 1273
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 105 tcgaccgcatcggc 118
||||||||||||||
Sbjct: 801 tcgaccgcatcggc 814
>IS881
Length = 3033
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 145 cttcgcaggccaga 158
||||||||||||||
Sbjct: 321 cttcgcaggccaga 308
>ISPal1
Length = 924
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 131 gcgcttcgacaagc 144
||||||||||||||
Sbjct: 834 gcgcttcgacaagc 847
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_359_length_236_cov_0.91195_ID_5888
(236 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISMgi3 | IS1182 | Mycobacterium gilvum | 34 | 0.075 | |
| ISMgi4 | IS1182 | Mycobacterium gilvum | 32 | 0.30 | |
| ISAzvi8 | IS701 | Azotobacter vinelandii | 30 | 1.2 | |
| ISH7B | ISNCY | Halobacterium sp. | 30 | 1.2 | |
| IS1081 | IS256 | - | Mycobacterium bovis | 30 | 1.2 |
| ISRsp12 | Tn3 | Rhizhobium sp. | 28 | 4.6 | |
| ISPa43 | Tn3 | Pseudomonas aeruginosa | 28 | 4.6 | |
| ISPa40 | Tn3 | Pseudomonas aeruginosa | 28 | 4.6 | |
| ISPsy30 | Tn3 | Pseudomonas syringae | 28 | 4.6 | |
| ISMsm12 | IS1380 | Mycobacterium smegmatis | 28 | 4.6 | |
| ISAde3 | IS3 | IS407 | Anaeromyxobacter dehalogenans | 28 | 4.6 |
| ISAau4 | Tn3 | Arthrobacter aurescens | 28 | 4.6 | |
| ISPst3 | IS21 | Pseudomonas stutzeri | 28 | 4.6 | |
| ISApr3 | IS1595 | ISSod11 | Alpha proteobacterium | 28 | 4.6 |
| ISSmu2 | ISL3 | Streptococcus mutans | 28 | 4.6 | |
| IS220 | IS1380 | - | Mycobacterium fortuitum | 28 | 4.6 |
| IS1016 | IS1595 | IS1016 | Neisseria gonorrhoeae | 28 | 4.6 |
>ISMgi3
Length = 1770
Score = 34.2 bits (17), Expect = 0.075
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 58 tgaccgcctcgaagatc 74
|||||||||||||||||
Sbjct: 448 tgaccgcctcgaagatc 432
>ISMgi4
Length = 1772
Score = 32.2 bits (16), Expect = 0.30
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 58 tgaccgcctcgaagat 73
||||||||||||||||
Sbjct: 447 tgaccgcctcgaagat 432
>ISAzvi8
Length = 1482
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 156 gaaagcgctatctgg 170
|||||||||||||||
Sbjct: 606 gaaagcgctatctgg 592
>ISH7B
Length = 2924
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 59 gaccgcctcgaagat 73
|||||||||||||||
Sbjct: 1243 gaccgcctcgaagat 1257
>IS1081
Length = 1435
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 143 ggccgcgtcgtcgga 157
|||||||||||||||
Sbjct: 654 ggccgcgtcgtcgga 668
>ISRsp12
Length = 3701
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 106 ggcctttacccatc 119
||||||||||||||
Sbjct: 2529 ggcctttacccatc 2542
>ISPa43
Length = 19903
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 46 cggcctcgacaatg 59
||||||||||||||
Sbjct: 18572 cggcctcgacaatg 18559
>ISPa40
Length = 6592
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 56 aatgaccgcctcga 69
||||||||||||||
Sbjct: 4657 aatgaccgcctcga 4644
>ISPsy30
Length = 5167
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 141 ttggccgcgtcgtc 154
||||||||||||||
Sbjct: 2689 ttggccgcgtcgtc 2676
>ISMsm12
Length = 3256
Score = 28.2 bits (14), Expect = 4.6
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 139 ggttggccgcgtcgtcgg 156
|||| |||||||||||||
Sbjct: 1733 ggtttgccgcgtcgtcgg 1750
>ISAde3
Length = 1183
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 144 gccgcgtcgtcgga 157
||||||||||||||
Sbjct: 400 gccgcgtcgtcgga 413
>ISAau4
Length = 3898
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 218 gcttgatgttccgt 231
||||||||||||||
Sbjct: 287 gcttgatgttccgt 300
>ISPst3
Length = 2606
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 102 gcctggcctttacc 115
||||||||||||||
Sbjct: 1873 gcctggcctttacc 1886
>ISApr3
Length = 1080
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 143 ggccgcgtcgtcgg 156
||||||||||||||
Sbjct: 128 ggccgcgtcgtcgg 115
>ISSmu2
Length = 1411
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 87 tcaaaaagctctat 100
||||||||||||||
Sbjct: 56 tcaaaaagctctat 43
>IS220
Length = 3257
Score = 28.2 bits (14), Expect = 4.6
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 139 ggttggccgcgtcgtcgg 156
|||| |||||||||||||
Sbjct: 1733 ggtttgccgcgtcgtcgg 1750
>IS1016
Length = 713
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 81 ctgccgtcaaaaag 94
||||||||||||||
Sbjct: 389 ctgccgtcaaaaag 402
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_360_length_236_cov_1.37107_ID_5890
(236 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| IS51 | IS3 | IS51 | Pseudomonas syringae | 38 | 0.005 |
| ISAs28 | IS21 | Aeromonas salmonicida | 32 | 0.30 | |
| ISAs27 | IS21 | Aeromonas salmonicida | 32 | 0.30 | |
| ISWpi17 | IS3 | IS150 | Wolbachia pipientis | 30 | 1.2 |
| ISHaru2 | IS200/IS605 | IS1341 | Halobellus rufus | 30 | 1.2 |
| ISHko3 | IS200/IS605 | Halorubrum kocurii | 28 | 4.6 | |
| ISHje2 | IS200/IS605 | IS605 | Halalkalicoccus jeotgali | 28 | 4.6 |
| ISHbo4 | IS200/IS605 | IS605 | Halogeometricum borinquense | 28 | 4.6 |
| ISHmu7 | IS200/IS605 | IS1341 | Halomicrobium mukohataei | 28 | 4.6 |
| ISMae43 | ISKra4 | ISMich2 | Microcystis aeruginosa | 28 | 4.6 |
| ISAzs20 | IS66 | Azospirillum sp. | 28 | 4.6 | |
| ISSis4 | ISNCY | ISC1217 | Sulfolobus islandicus | 28 | 4.6 |
| ISPto2 | IS4 | IS4Sa | Psychroflexus torquis | 28 | 4.6 |
| ISCb2 | IS4 | IS231 | Clostridium beijerincki | 28 | 4.6 |
| ISXac2 | IS3 | IS407 | Xanthomonas axonopodis | 28 | 4.6 |
| ISHma12 | IS200/IS605 | Haloarcula marismortui | 28 | 4.6 | |
| ISMba11 | IS1634 | Methanosarcina barkeri | 28 | 4.6 | |
| ISBcen18 | IS256 | Burkholderia cenocepacia | 28 | 4.6 | |
| ISAba6 | IS982 | Acinetobacter baumannii | 28 | 4.6 | |
| ISTfu1 | IS200/IS605 | Thermobifida fusca | 28 | 4.6 | |
| ISFnu4 | IS110 | Fusobacterium nucleatum | 28 | 4.6 | |
| IS882 | Tn3 | Ralstonia eutropha | 28 | 4.6 | |
| ISBlo11 | IS3 | IS150 | Bifidobacterium longum | 28 | 4.6 |
| ISPpu10 | IS110 | Pseudomonas putida | 28 | 4.6 | |
| ISXcd1 | IS3 | IS407 | Xanthomonas axonopodis | 28 | 4.6 |
| ISSeq3 | IS3 | IS150 | Streptococcus equi | 28 | 4.6 |
| IS4811 | IS5 | IS1031 | Streptomyces lividans | 28 | 4.6 |
| IS1395 | IS256 | - | Mycobacterium xenopi | 28 | 4.6 |
>IS51
Length = 1311
Score = 38.2 bits (19), Expect = 0.005
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 50 gagcacatccagcgagtct 68
|||||||||||||||||||
Sbjct: 527 gagcacatccagcgagtct 545
>ISAs28
Length = 2626
Score = 32.2 bits (16), Expect = 0.30
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 5 ctgatcgacatgatgt 20
||||||||||||||||
Sbjct: 2602 ctgatcgacatgatgt 2617
>ISAs27
Length = 2628
Score = 32.2 bits (16), Expect = 0.30
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 5 ctgatcgacatgatgt 20
||||||||||||||||
Sbjct: 2604 ctgatcgacatgatgt 2619
>ISWpi17
Length = 1287
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 95 ttcctgctgatcttt 109
|||||||||||||||
Sbjct: 1145 ttcctgctgatcttt 1159
>ISHaru2
Length = 1536
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 62 cgagtcttcgaccag 76
|||||||||||||||
Sbjct: 1350 cgagtcttcgaccag 1364
>ISHko3
Length = 1862
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 51 agcacatccagcga 64
||||||||||||||
Sbjct: 569 agcacatccagcga 556
>ISHje2
Length = 1837
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 51 agcacatccagcga 64
||||||||||||||
Sbjct: 548 agcacatccagcga 535
>ISHbo4
Length = 1835
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 51 agcacatccagcga 64
||||||||||||||
Sbjct: 546 agcacatccagcga 533
>ISHmu7
Length = 1455
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 49 cgagcacatccagc 62
||||||||||||||
Sbjct: 617 cgagcacatccagc 630
>ISMae43
Length = 1262
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 172 ttatttaaacaagc 185
||||||||||||||
Sbjct: 1006 ttatttaaacaagc 1019
>ISAzs20
Length = 2811
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 66 tcttcgaccagccg 79
||||||||||||||
Sbjct: 174 tcttcgaccagccg 161
>ISSis4
Length = 1205
Score = 28.2 bits (14), Expect = 4.6
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 81 ttctcaaagagcaattcc 98
|||||||||||| |||||
Sbjct: 627 ttctcaaagagcgattcc 644
>ISPto2
Length = 1389
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 92 caattcctgctgat 105
||||||||||||||
Sbjct: 289 caattcctgctgat 276
>ISCb2
Length = 1523
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 92 caattcctgctgat 105
||||||||||||||
Sbjct: 1193 caattcctgctgat 1180
>ISXac2
Length = 1195
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 49 cgagcacatccagc 62
||||||||||||||
Sbjct: 944 cgagcacatccagc 957
>ISHma12
Length = 1835
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 51 agcacatccagcga 64
||||||||||||||
Sbjct: 546 agcacatccagcga 533
>ISMba11
Length = 1718
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 79 gattctcaaagagc 92
||||||||||||||
Sbjct: 986 gattctcaaagagc 999
>ISBcen18
Length = 1372
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 123 ccgacggccagcgc 136
||||||||||||||
Sbjct: 687 ccgacggccagcgc 700
>ISAba6
Length = 1003
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 91 gcaattcctgctga 104
||||||||||||||
Sbjct: 424 gcaattcctgctga 411
>ISTfu1
Length = 1743
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 41 ttcacccccgagca 54
||||||||||||||
Sbjct: 528 ttcacccccgagca 541
>ISFnu4
Length = 1562
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 170 ttttatttaaacaa 183
||||||||||||||
Sbjct: 480 ttttatttaaacaa 493
>IS882
Length = 3363
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 10 cgacatgatgtcgc 23
||||||||||||||
Sbjct: 2155 cgacatgatgtcgc 2168
>ISBlo11
Length = 1432
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 35 gccgaattcacccc 48
||||||||||||||
Sbjct: 572 gccgaattcacccc 559
>ISPpu10
Length = 1314
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 159 acccctcctccttt 172
||||||||||||||
Sbjct: 81 acccctcctccttt 94
>ISXcd1
Length = 1195
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 49 cgagcacatccagc 62
||||||||||||||
Sbjct: 944 cgagcacatccagc 957
>ISSeq3
Length = 1430
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 104 atctttggtggcct 117
||||||||||||||
Sbjct: 404 atctttggtggcct 391
>IS4811
Length = 5396
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 66 tcttcgaccagccg 79
||||||||||||||
Sbjct: 2851 tcttcgaccagccg 2838
>IS1395
Length = 1323
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 65 gtcttcgaccagcc 78
||||||||||||||
Sbjct: 892 gtcttcgaccagcc 905
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_361_length_236_cov_0.918239_ID_5892
(236 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISMdi5 | IS3 | IS3 | Methylobacterium dichloromethanicum | 32 | 0.30 |
| ISHna1 | IS200/IS605 | IS1341 | Haloplanus natans | 30 | 1.2 |
| ISHli2 | IS5 | ISH1 | Halohasta litchfieldiae | 30 | 1.2 |
| ISMgi5 | IS256 | Mycobacterium gilvum | 30 | 1.2 | |
| ISAar32 | IS1380 | Arthrobacter arilaitensis | 30 | 1.2 | |
| ISAar8 | IS1380 | Arthrobacter arilaitensis | 30 | 1.2 | |
| ISCARN94 | IS1595 | IS1595 | Metagenomic data from CARNOULES | 30 | 1.2 |
| ISShes13 | IS3 | IS3 | Shewanella sp. | 30 | 1.2 |
| ISAli14 | ISAs1 | Azospirillum lipoferum | 30 | 1.2 | |
| ISLxc1 | IS21 | Leifsonia xyli | 30 | 1.2 | |
| ISAba24 | IS66 | Acinetobacter baumannii | 28 | 4.6 | |
| ISHoc2 | ISKra4 | ISKra4 | Haliangium ochraceum | 28 | 4.6 |
| ISAzba9 | ISL3 | Azospirillum brasilense | 28 | 4.6 | |
| ISVsp17 | ISL3 | Verrucomicrobium spinosum | 28 | 4.6 | |
| ISButh4 | IS5 | IS5 | Burkholderia thailandensis | 28 | 4.6 |
| ISRhru4 | IS256 | Rhodospirillum rubrum | 28 | 4.6 | |
| ISNml2 | IS1380 | Nakamurella multipartita | 28 | 4.6 | |
| ISMdi8 | IS481 | Methylobacterium dichloromethanicum | 28 | 4.6 | |
| ISStma11 | ISL3 | Stenotrophomonas maltophilia | 28 | 4.6 | |
| ISAzo33 | IS630 | Azoarcus sp. | 28 | 4.6 | |
| ISAzo32 | IS630 | Azoarcus sp. | 28 | 4.6 | |
| ISCARN18 | IS110 | IS1111 | Metagenomic data from CARNOULES | 28 | 4.6 |
| ISAfe3 | IS110 | Acidithiobacillus ferrooxidans | 28 | 4.6 | |
| ISShes12 | IS1634 | Shewanella sp. | 28 | 4.6 | |
| ISMpe1 | IS3 | IS3 | Methylibium petroleiphilum | 28 | 4.6 |
| ISBvi4 | IS3 | IS3 | Burkholderia vietnamiensis | 28 | 4.6 |
| ISBj6_B | IS701 | Bradyrhizobium japonicum | 28 | 4.6 | |
| ISRm16 | IS4 | IS4Sa | Sinorhizobium meliloti | 28 | 4.6 |
| IS1953 | IS3 | IS3 | Brucella melitensis | 28 | 4.6 |
| ISXa1 | ISAs1 | - | Xanthobacter autotrophicus | 28 | 4.6 |
| ISRso7 | IS256 | - | Ralstonia solanacearum | 28 | 4.6 |
| ISAav1 | IS21 | - | Acidovorax avenae | 28 | 4.6 |
| IS666 | IS256 | - | Mycobacterium avium | 28 | 4.6 |
| IS426 | IS3 | IS2 | Agrobacterium tumefaciens | 28 | 4.6 |
| ISAfl1 | IS701 | Anoxybacillus flavithermus | 28 | 4.6 |
>ISMdi5
Length = 1279
Score = 32.2 bits (16), Expect = 0.30
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 24 gcggctcatcgacggc 39
||||||||||||||||
Sbjct: 1042 gcggctcatcgacggc 1027
>ISHna1
Length = 1456
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 47 atgttcgccaccgtc 61
|||||||||||||||
Sbjct: 1360 atgttcgccaccgtc 1346
>ISHli2
Length = 937
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 3 cgccacactgcgtcg 17
|||||||||||||||
Sbjct: 14 cgccacactgcgtcg 28
>ISMgi5
Length = 1470
Score = 30.2 bits (15), Expect = 1.2
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 21 ccagcggctcatcgacggc 39
||||| |||||||||||||
Sbjct: 154 ccagcagctcatcgacggc 136
>ISAar32
Length = 1738
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 82 gaggcaatacccgcc 96
|||||||||||||||
Sbjct: 1048 gaggcaatacccgcc 1062
>ISAar8
Length = 1738
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 82 gaggcaatacccgcc 96
|||||||||||||||
Sbjct: 1048 gaggcaatacccgcc 1062
>ISCARN94
Length = 1048
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 62 aattccgccatcggc 76
|||||||||||||||
Sbjct: 136 aattccgccatcggc 122
>ISShes13
Length = 1305
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 161 taagacagcgaaata 175
|||||||||||||||
Sbjct: 670 taagacagcgaaata 656
>ISAli14
Length = 1267
Score = 30.2 bits (15), Expect = 1.2
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 216 cgtcctggcgcaacgccaa 234
||||| |||||||||||||
Sbjct: 431 cgtccgggcgcaacgccaa 413
>ISLxc1
Length = 3533
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 168 gcgaaatactctgtc 182
|||||||||||||||
Sbjct: 2059 gcgaaatactctgtc 2073
>ISAba24
Length = 2421
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 21 ccagcggctcatcg 34
||||||||||||||
Sbjct: 1534 ccagcggctcatcg 1521
>ISHoc2
Length = 1715
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 13 cgtcgcgtccagcg 26
||||||||||||||
Sbjct: 1091 cgtcgcgtccagcg 1104
>ISAzba9
Length = 1847
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 69 ccatcggcttggcg 82
||||||||||||||
Sbjct: 469 ccatcggcttggcg 482
>ISVsp17
Length = 1327
Score = 28.2 bits (14), Expect = 4.6
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 116 gacaccaggttgtggcgg 133
|||||| |||||||||||
Sbjct: 461 gacacccggttgtggcgg 478
>ISButh4
Length = 1483
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 73 cggcttggcgaggc 86
||||||||||||||
Sbjct: 462 cggcttggcgaggc 475
>ISRhru4
Length = 1411
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 214 gccgtcctggcgca 227
||||||||||||||
Sbjct: 666 gccgtcctggcgca 653
>ISNml2
Length = 1689
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 66 ccgccatcggcttg 79
||||||||||||||
Sbjct: 283 ccgccatcggcttg 270
>ISMdi8
Length = 1002
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 31 atcgacggcgacaa 44
||||||||||||||
Sbjct: 405 atcgacggcgacaa 418
>ISStma11
Length = 4621
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 93 cgccaccggggcca 106
||||||||||||||
Sbjct: 2539 cgccaccggggcca 2526
>ISAzo33
Length = 1100
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 71 atcggcttggcgag 84
||||||||||||||
Sbjct: 247 atcggcttggcgag 234
>ISAzo32
Length = 1100
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 71 atcggcttggcgag 84
||||||||||||||
Sbjct: 247 atcggcttggcgag 234
>ISCARN18
Length = 1561
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 216 cgtcctggcgcaac 229
||||||||||||||
Sbjct: 852 cgtcctggcgcaac 839
>ISAfe3
Length = 1560
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 62 aattccgccatcgg 75
||||||||||||||
Sbjct: 738 aattccgccatcgg 725
>ISShes12
Length = 1721
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 67 cgccatcggcttgg 80
||||||||||||||
Sbjct: 524 cgccatcggcttgg 511
>ISMpe1
Length = 1295
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 24 gcggctcatcgacg 37
||||||||||||||
Sbjct: 1031 gcggctcatcgacg 1018
>ISBvi4
Length = 1268
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 24 gcggctcatcgacg 37
||||||||||||||
Sbjct: 1013 gcggctcatcgacg 1000
>ISBj6_B
Length = 1447
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 64 ttccgccatcggct 77
||||||||||||||
Sbjct: 244 ttccgccatcggct 231
>ISRm16
Length = 1299
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 213 cgccgtcctggcgc 226
||||||||||||||
Sbjct: 908 cgccgtcctggcgc 895
>IS1953
Length = 1235
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 128 tggcggcgcaattt 141
||||||||||||||
Sbjct: 184 tggcggcgcaattt 197
>ISXa1
Length = 3041
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 212 ccgccgtcctggcg 225
||||||||||||||
Sbjct: 2076 ccgccgtcctggcg 2089
>ISRso7
Length = 1344
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 219 cctggcgcaacgcc 232
||||||||||||||
Sbjct: 1021 cctggcgcaacgcc 1034
>ISAav1
Length = 2532
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 130 gcggcgcaatttgc 143
||||||||||||||
Sbjct: 143 gcggcgcaatttgc 130
>IS666
Length = 1472
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 49 gttcgccaccgtca 62
||||||||||||||
Sbjct: 1199 gttcgccaccgtca 1212
>IS426
Length = 1319
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 25 cggctcatcgacgg 38
||||||||||||||
Sbjct: 1186 cggctcatcgacgg 1199
>ISAfl1
Length = 1363
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 136 caatttgccaaaaa 149
||||||||||||||
Sbjct: 439 caatttgccaaaaa 452
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_362_length_236_cov_0.918239_ID_5894
(236 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISUnCu4 | IS30 | Plasmid QKH54 | 36 | 0.019 | |
| ISHla15 | IS200/IS605 | Halorubrum lacusprofundi | 32 | 0.30 | |
| ISHmu6 | IS200/IS605 | Halomicrobium mukohataei | 32 | 0.30 | |
| ISArsp6 | Tn3 | Arthrobacter sp. | 32 | 0.30 | |
| ISRso17 | IS701 | - | Ralstonia solanacearum | 32 | 0.30 |
| TnXo19 | Tn3 | Xanthomonas oryzae | 30 | 1.2 | |
| ISShdy2 | IS66 | Shigella dysenteriae | 30 | 1.2 | |
| ISRel24 | IS66 | Rhizobium etli | 30 | 1.2 | |
| ISRm20 | IS481 | Sinorhizobium meliloti | 30 | 1.2 | |
| ISOan1 | ISAs1 | Octadecabacter antarcticus | 30 | 1.2 | |
| ISGst1 | IS66 | ISBst12 | Geobacillus stearothermophilus | 30 | 1.2 |
| ISBst12 | IS66 | ISBst12 | Bacillus stearothermophilus | 30 | 1.2 |
| IS1066 | IS630 | - | Pseudomonas sp. | 30 | 1.2 |
| ISHam2 | IS200/IS605 | IS1341 | Haloarcula amylolytica | 28 | 4.6 |
| ISHla11 | ISH3 | Halorubrum lacusprofundi | 28 | 4.6 | |
| ISMfu2 | ISKra4 | ISKra4 | Myxococcus fulvus | 28 | 4.6 |
| ISNamo5 | IS701 | Natronomonas moolapensis | 28 | 4.6 | |
| ISPa38 | Tn3 | Pseudomonas aeruginosa | 28 | 4.6 | |
| ISGau7 | IS21 | Gemmatimonas aurantiaca | 28 | 4.6 | |
| ISVsp7 | ISAs1 | Verrucomicrobium spinosum | 28 | 4.6 | |
| ISMno8 | IS1182 | Methylobacterium nodulans | 28 | 4.6 | |
| ISPfr10 | IS3 | IS407 | Propionibacterium freudenreichii | 28 | 4.6 |
| ISAar43 | IS3 | IS407 | Arthrobacter arilaitensis | 28 | 4.6 |
| ISMex28 | IS5 | IS5 | Methylobacterium extorquens | 28 | 4.6 |
| ISMdi6 | IS1182 | Methylobacterium dichloromethanicum | 28 | 4.6 | |
| ISMex36 | IS1182 | Methylobacterium extorquens | 28 | 4.6 | |
| ISStag2 | IS481 | Stappia aggregata | 28 | 4.6 | |
| ISCARN20 | IS110 | Metagenomic data from CARNOULES | 28 | 4.6 | |
| ISGka5 | IS66 | ISBst12 | Geobacillus kaustophilus | 28 | 4.6 |
| IS1553 | IS256 | Mycobacterium tuberculosis | 28 | 4.6 | |
| ISEc8 | IS66 | Escherichia coli | 28 | 4.6 | |
| ISBlo4 | IS30 | Bifidobacterium longum | 28 | 4.6 | |
| ISRso6 | IS21 | - | Ralstonia solanacearum | 28 | 4.6 |
| IS1535 | IS607 | Mycobacterium tuberculosis | 28 | 4.6 |
>ISUnCu4
Length = 1113
Score = 36.2 bits (18), Expect = 0.019
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 174 gccatcgcactgcaactg 191
||||||||||||||||||
Sbjct: 956 gccatcgcactgcaactg 973
>ISHla15
Length = 1835
Score = 32.2 bits (16), Expect = 0.30
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 79 cgacgccacgctcaag 94
||||||||||||||||
Sbjct: 1025 cgacgccacgctcaag 1040
>ISHmu6
Length = 1889
Score = 32.2 bits (16), Expect = 0.30
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 79 cgacgccacgctcaag 94
||||||||||||||||
Sbjct: 1079 cgacgccacgctcaag 1094
>ISArsp6
Length = 26712
Score = 32.2 bits (16), Expect = 0.30
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 126 ccgcctcgccgcgtcc 141
||||||||||||||||
Sbjct: 26163 ccgcctcgccgcgtcc 26178
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 162 ggccttggccgcgc 175
||||||||||||||
Sbjct: 13948 ggccttggccgcgc 13935
>ISRso17
Length = 1471
Score = 32.2 bits (16), Expect = 0.30
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 65 ggcatgcagatcgccg 80
||||||||||||||||
Sbjct: 117 ggcatgcagatcgccg 132
>TnXo19
Length = 18767
Score = 30.2 bits (15), Expect = 1.2
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 64 cggcatgcagatcgccgac 82
||||||| |||||||||||
Sbjct: 711 cggcatgaagatcgccgac 693
>ISShdy2
Length = 2496
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 133 gccgcgtcctcgtca 147
|||||||||||||||
Sbjct: 1108 gccgcgtcctcgtca 1094
>ISRel24
Length = 2837
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 158 ccgcggccttggccg 172
|||||||||||||||
Sbjct: 2814 ccgcggccttggccg 2828
>ISRm20
Length = 1265
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 77 gccgacgccacgctc 91
|||||||||||||||
Sbjct: 540 gccgacgccacgctc 554
>ISOan1
Length = 1245
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 11 gtgtttcgcgacgat 25
|||||||||||||||
Sbjct: 1050 gtgtttcgcgacgat 1064
>ISGst1
Length = 1613
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 208 ccatcacggtgcact 222
|||||||||||||||
Sbjct: 1144 ccatcacggtgcact 1158
>ISBst12
Length = 1612
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 208 ccatcacggtgcact 222
|||||||||||||||
Sbjct: 1143 ccatcacggtgcact 1157
>IS1066
Length = 1137
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 160 gcggccttggccgcg 174
|||||||||||||||
Sbjct: 535 gcggccttggccgcg 521
>ISHam2
Length = 1580
Score = 28.2 bits (14), Expect = 4.6
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 100 cgagactcccgaccatga 117
||||| ||||||||||||
Sbjct: 346 cgagattcccgaccatga 363
>ISHla11
Length = 1376
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 137 cgtcctcgtcaccg 150
||||||||||||||
Sbjct: 412 cgtcctcgtcaccg 399
>ISMfu2
Length = 1554
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 176 catcgcactgcaac 189
||||||||||||||
Sbjct: 281 catcgcactgcaac 268
>ISNamo5
Length = 1277
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 21 acgattctggcctc 34
||||||||||||||
Sbjct: 624 acgattctggcctc 637
>ISPa38
Length = 6455
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 69 tgcagatcgccgac 82
||||||||||||||
Sbjct: 350 tgcagatcgccgac 363
>ISGau7
Length = 2510
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 78 ccgacgccacgctc 91
||||||||||||||
Sbjct: 2101 ccgacgccacgctc 2114
>ISVsp7
Length = 1237
Score = 28.2 bits (14), Expect = 4.6
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 195 gcgcagggctttgccatc 212
|||||| |||||||||||
Sbjct: 442 gcgcagagctttgccatc 425
>ISMno8
Length = 1466
Score = 28.2 bits (14), Expect = 4.6
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 149 cggctccagccgcggcct 166
||||| ||||||||||||
Sbjct: 266 cggctacagccgcggcct 283
>ISPfr10
Length = 1247
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 81 acgccacgctcaag 94
||||||||||||||
Sbjct: 289 acgccacgctcaag 302
>ISAar43
Length = 1247
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 81 acgccacgctcaag 94
||||||||||||||
Sbjct: 289 acgccacgctcaag 302
>ISMex28
Length = 1310
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 70 gcagatcgccgacg 83
||||||||||||||
Sbjct: 895 gcagatcgccgacg 882
>ISMdi6
Length = 1466
Score = 28.2 bits (14), Expect = 4.6
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 149 cggctccagccgcggcct 166
||||| ||||||||||||
Sbjct: 266 cggctacagccgcggcct 283
>ISMex36
Length = 1467
Score = 28.2 bits (14), Expect = 4.6
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 149 cggctccagccgcggcct 166
||||| ||||||||||||
Sbjct: 266 cggctacagccgcggcct 283
>ISStag2
Length = 1035
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 190 tggcggcgcagggc 203
||||||||||||||
Sbjct: 337 tggcggcgcagggc 324
>ISCARN20
Length = 1628
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 164 ccttggccgcgcca 177
||||||||||||||
Sbjct: 1038 ccttggccgcgcca 1025
>ISGka5
Length = 1610
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 209 catcacggtgcact 222
||||||||||||||
Sbjct: 1142 catcacggtgcact 1155
>IS1553
Length = 1406
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 127 cgcctcgccgcgtc 140
||||||||||||||
Sbjct: 1022 cgcctcgccgcgtc 1035
>ISEc8
Length = 2442
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 203 ctttgccatcacgg 216
||||||||||||||
Sbjct: 725 ctttgccatcacgg 712
>ISBlo4
Length = 1399
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 160 gcggccttggccgc 173
||||||||||||||
Sbjct: 789 gcggccttggccgc 776
>ISRso6
Length = 2064
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 79 cgacgccacgctca 92
||||||||||||||
Sbjct: 1789 cgacgccacgctca 1802
>IS1535
Length = 2300
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 128 gcctcgccgcgtcc 141
||||||||||||||
Sbjct: 2243 gcctcgccgcgtcc 2230
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_363_length_236_cov_0.918239_ID_5896
(236 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISArsp6 | Tn3 | Arthrobacter sp. | 32 | 0.30 | |
| ISGdi5 | IS630 | Gluconacetobacter diazotrophicus | 32 | 0.30 | |
| ISPre4 | IS21 | Pseudomonas resinovorans | 32 | 0.30 | |
| ISPsy13 | IS3 | IS3 | Pseudomonas syringae | 32 | 0.30 |
| ISAmde4 | ISLre2 | Ammonifex degensii | 30 | 1.2 | |
| ISAmde2 | ISLre2 | Ammonifex degensii | 30 | 1.2 | |
| ISAzs24 | IS3 | IS51 | Azospirillum sp. | 30 | 1.2 |
| ISAnsp12 | IS66 | Anaeromyxobacter sp. | 30 | 1.2 | |
| ISMex33 | IS3 | IS51 | Methylobacterium extorquens | 30 | 1.2 |
| ISAzo15 | IS66 | Azoarcus sp. | 30 | 1.2 | |
| ISCARN22 | IS66 | Metagenomic data from CARNOULES | 30 | 1.2 | |
| ISPpu12 | ISL3 | Pseudomonas putida | 30 | 1.2 | |
| ISPst2 | ISL3 | - | Pseudomonas stutzeri | 30 | 1.2 |
| IS1396 | ISL3 | - | Serratia marcescens | 30 | 1.2 |
| TnAs3 | Tn3 | Aeromonas salmonicida | 28 | 4.6 | |
| TnAs2 | Tn3 | Aeromonas salmonicida | 28 | 4.6 | |
| ISSm4 | ISL3 | Serratia marcescens | 28 | 4.6 | |
| ISMtu1 | IS256 | Mycobacterium tusciae | 28 | 4.6 | |
| ISNamo9 | IS6 | Natronomonas moolapensis | 28 | 4.6 | |
| ISPa43 | Tn3 | Pseudomonas aeruginosa | 28 | 4.6 | |
| ISPaes3 | IS256 | Paracoccus aestuarii | 28 | 4.6 | |
| ISShes11 | Tn3 | Shewanella sp. | 28 | 4.6 | |
| ISMno32 | IS1182 | Methylobacterium nodulans | 28 | 4.6 | |
| ISAzo2 | IS1182 | Azoarcus sp. | 28 | 4.6 | |
| ISAfe7 | IS3 | IS51 | Acidithiobacillus ferrooxidans | 28 | 4.6 |
| ISPsy24 | IS3 | IS3 | Pseudomonas syringae | 28 | 4.6 |
| ISDvu5 | ISL3 | Desulfovibrio vulgaris | 28 | 4.6 | |
| IS1357 | IS701 | - | Methylobacterium dichloromethanicum | 28 | 4.6 |
>ISArsp6
Length = 26712
Score = 32.2 bits (16), Expect = 0.30
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 77 gccggcgtgtccctgg 92
||||||||||||||||
Sbjct: 6826 gccggcgtgtccctgg 6841
>ISGdi5
Length = 1160
Score = 32.2 bits (16), Expect = 0.30
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 7 caagccgatcgagatc 22
||||||||||||||||
Sbjct: 622 caagccgatcgagatc 637
>ISPre4
Length = 2575
Score = 32.2 bits (16), Expect = 0.30
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 144 acggcctgatcaaggcgctg 163
||||| ||||||||||||||
Sbjct: 1762 acggcatgatcaaggcgctg 1781
>ISPsy13
Length = 1232
Score = 32.2 bits (16), Expect = 0.30
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 150 tgatcaaggcgctgga 165
||||||||||||||||
Sbjct: 861 tgatcaaggcgctgga 876
>ISAmde4
Length = 1584
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 178 cggcctggctggcaa 192
|||||||||||||||
Sbjct: 316 cggcctggctggcaa 330
>ISAmde2
Length = 1584
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 178 cggcctggctggcaa 192
|||||||||||||||
Sbjct: 316 cggcctggctggcaa 330
>ISAzs24
Length = 1325
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 151 gatcaaggcgctgga 165
|||||||||||||||
Sbjct: 272 gatcaaggcgctgga 286
>ISAnsp12
Length = 2926
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 139 catcgacggcctgat 153
|||||||||||||||
Sbjct: 532 catcgacggcctgat 546
>ISMex33
Length = 1318
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 151 gatcaaggcgctgga 165
|||||||||||||||
Sbjct: 266 gatcaaggcgctgga 280
>ISAzo15
Length = 2441
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 137 ggcatcgacggcctg 151
|||||||||||||||
Sbjct: 456 ggcatcgacggcctg 470
>ISCARN22
Length = 2674
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 181 cctggctggcaacgc 195
|||||||||||||||
Sbjct: 515 cctggctggcaacgc 501
>ISPpu12
Length = 3372
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 90 tggtgaccaactacc 104
|||||||||||||||
Sbjct: 2581 tggtgaccaactacc 2595
>ISPst2
Length = 2984
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 90 tggtgaccaactacc 104
|||||||||||||||
Sbjct: 2193 tggtgaccaactacc 2207
>IS1396
Length = 1771
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 90 tggtgaccaactacc 104
|||||||||||||||
Sbjct: 534 tggtgaccaactacc 548
>TnAs3
Length = 18735
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 151 gatcaaggcgctgg 164
||||||||||||||
Sbjct: 16173 gatcaaggcgctgg 16160
>TnAs2
Length = 8650
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 151 gatcaaggcgctgg 164
||||||||||||||
Sbjct: 6085 gatcaaggcgctgg 6072
>ISSm4
Length = 9109
Score = 28.2 bits (14), Expect = 4.6
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 149 ctgatcaaggcgctggaa 166
|||| |||||||||||||
Sbjct: 4750 ctgaccaaggcgctggaa 4767
>ISMtu1
Length = 1474
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 136 cggcatcgacggcc 149
||||||||||||||
Sbjct: 1155 cggcatcgacggcc 1168
>ISNamo9
Length = 696
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 201 gagtgaggcggtgc 214
||||||||||||||
Sbjct: 24 gagtgaggcggtgc 37
>ISPa43
Length = 19903
Score = 28.2 bits (14), Expect = 4.6
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 138 gcatcgacggcctgatca 155
||||||||||| ||||||
Sbjct: 18579 gcatcgacggcatgatca 18596
>ISPaes3
Length = 1393
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 28 cgccctcgaaaagc 41
||||||||||||||
Sbjct: 515 cgccctcgaaaagc 502
>ISShes11
Length = 7669
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 151 gatcaaggcgctgg 164
||||||||||||||
Sbjct: 5107 gatcaaggcgctgg 5094
>ISMno32
Length = 1538
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 135 gcggcatcgacggc 148
||||||||||||||
Sbjct: 785 gcggcatcgacggc 772
>ISAzo2
Length = 1545
Score = 28.2 bits (14), Expect = 4.6
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 156 aggcgctggaagccaaga 173
|||||| |||||||||||
Sbjct: 765 aggcgcaggaagccaaga 782
>ISAfe7
Length = 1329
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 152 atcaaggcgctgga 165
||||||||||||||
Sbjct: 273 atcaaggcgctgga 286
>ISPsy24
Length = 1235
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 152 atcaaggcgctgga 165
||||||||||||||
Sbjct: 865 atcaaggcgctgga 878
>ISDvu5
Length = 1357
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 32 ctcgaaaagcaggg 45
||||||||||||||
Sbjct: 418 ctcgaaaagcaggg 405
>IS1357
Length = 1435
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 82 cgtgtccctggtga 95
||||||||||||||
Sbjct: 1155 cgtgtccctggtga 1168
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_364_length_235_cov_0.917722_ID_5898
(235 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISBlo7 | IS30 | Bifidobacterium longum | 34 | 0.074 | |
| ISLxc4 | IS30 | Leifsonia xyli | 32 | 0.29 | |
| ISCmi3 | IS30 | Clavibacter michiganensis | 32 | 0.29 | |
| ISLxx5 | IS30 | Leifsonia xyli | 32 | 0.29 | |
| IS1394 | IS30 | - | Pseudomonas alcaligenes | 32 | 0.29 |
| IS1382 | IS30 | - | Pseudomonas putida | 32 | 0.29 |
| ISMva4 | IS256 | Mycobacterium vanbaalenii | 30 | 1.2 | |
| ISDpr8 | ISAzo13 | Delta proteobacterium | 30 | 1.2 | |
| ISAzo12 | IS21 | Azoarcus sp. | 30 | 1.2 | |
| ISDge14 | IS701 | Deinococcus geothermalis | 30 | 1.2 | |
| ISMdi15 | IS200/IS605 | IS1341 | Methylobacterium dichloromethanicum | 28 | 4.6 |
| ISCep1 | ISKra4 | ISAzba1 | Crinalium epipsammum | 28 | 4.6 |
| ISEc42 | IS200/IS605 | IS1341 | Escherichia coli | 28 | 4.6 |
| ISCpo1 | ISNCY | ISDol1 | Candidatus Poribacteria sp. | 28 | 4.6 |
| ISDisp1 | IS5 | Diaphorobacter sp. | 28 | 4.6 | |
| ISPfr9 | IS30 | Propionibacterium freudenreichii | 28 | 4.6 | |
| ISFsp15 | IS1380 | Frankia sp. | 28 | 4.6 | |
| ISFsp14 | IS1380 | Frankia sp. | 28 | 4.6 | |
| ISAar21 | IS4 | IS4 | Arthrobacter arilaitensis | 28 | 4.6 |
| ISCARN44 | IS630 | Metagenomic data from CARNOULES | 28 | 4.6 | |
| ISCARN28 | IS110 | IS1111 | Metagenomic data from CARNOULES | 28 | 4.6 |
| ISRosp4 | IS66 | Roseobacter sp. | 28 | 4.6 | |
| ISDge3 | IS1 | Deinococcus geothermalis | 28 | 4.6 | |
| ISXoo13 | ISL3 | Xanthomonas oryzae | 28 | 4.6 | |
| ISSsp4 | IS21 | Sphingomonas sp. | 28 | 4.6 | |
| ISPre4 | IS21 | Pseudomonas resinovorans | 28 | 4.6 | |
| ISBlma7 | ISAs1 | Blastopirellula marina | 28 | 4.6 | |
| ISSgr1 | IS110 | IS1111 | Streptomyces griseus | 28 | 4.6 |
| ISSam1 | IS110 | Streptomyces ambofaciens | 28 | 4.6 | |
| ISPpa5 | IS66 | Paracoccus pantotrophus | 28 | 4.6 | |
| ISPa42 | Tn3 | Pseudomonas aeruginosa | 28 | 4.6 | |
| ISMt2 | IS21 | - | Mycobacterium tuberculosis | 28 | 4.6 |
| IS1452 | IS701 | - | Acetobacter pasteurianus | 28 | 4.6 |
| IS1112b | IS30 | - | Xanthomonas oryzae | 28 | 4.6 |
| IS1112a | IS30 | - | Xanthomonas oryzae | 28 | 4.6 |
| IS1112 | IS30 | - | Xanthomonas oryzae | 28 | 4.6 |
| IS110 | IS110 | - | Streptomyces coelicolor | 28 | 4.6 |
>ISBlo7
Length = 1272
Score = 34.2 bits (17), Expect = 0.074
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 73 ctgttctcgttgctgcc 89
|||||||||||||||||
Sbjct: 980 ctgttctcgttgctgcc 964
>ISLxc4
Length = 1311
Score = 32.2 bits (16), Expect = 0.29
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 74 tgttctcgttgctgcc 89
||||||||||||||||
Sbjct: 1110 tgttctcgttgctgcc 1095
>ISCmi3
Length = 1459
Score = 32.2 bits (16), Expect = 0.29
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 74 tgttctcgttgctgcc 89
||||||||||||||||
Sbjct: 1260 tgttctcgttgctgcc 1245
>ISLxx5
Length = 1495
Score = 32.2 bits (16), Expect = 0.29
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 74 tgttctcgttgctgcc 89
||||||||||||||||
Sbjct: 1299 tgttctcgttgctgcc 1284
>IS1394
Length = 1100
Score = 32.2 bits (16), Expect = 0.29
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 74 tgttctcgttgctgcc 89
||||||||||||||||
Sbjct: 883 tgttctcgttgctgcc 868
>IS1382
Length = 1093
Score = 32.2 bits (16), Expect = 0.29
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 74 tgttctcgttgctgcc 89
||||||||||||||||
Sbjct: 219 tgttctcgttgctgcc 234
>ISMva4
Length = 1458
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 9 gcctgctgcccgggc 23
|||||||||||||||
Sbjct: 193 gcctgctgcccgggc 207
>ISDpr8
Length = 1335
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 20 gggccatttcatcat 34
|||||||||||||||
Sbjct: 1225 gggccatttcatcat 1211
>ISAzo12
Length = 3075
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 52 agccccagggggttg 66
|||||||||||||||
Sbjct: 2687 agccccagggggttg 2673
>ISDge14
Length = 1152
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 31 tcattcagcgactcg 45
|||||||||||||||
Sbjct: 1060 tcattcagcgactcg 1074
>ISMdi15
Length = 1344
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 158 cccggccttcacgc 171
||||||||||||||
Sbjct: 397 cccggccttcacgc 384
>ISCep1
Length = 2958
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 24 catttcatcattca 37
||||||||||||||
Sbjct: 217 catttcatcattca 230
>ISEc42
Length = 1291
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 103 gctgcggtttcacc 116
||||||||||||||
Sbjct: 1067 gctgcggtttcacc 1080
>ISCpo1
Length = 1918
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 163 ccttcacgcaacac 176
||||||||||||||
Sbjct: 1251 ccttcacgcaacac 1238
>ISDisp1
Length = 1321
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 135 gatctcgacatcca 148
||||||||||||||
Sbjct: 769 gatctcgacatcca 756
>ISPfr9
Length = 1484
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 74 tgttctcgttgctg 87
||||||||||||||
Sbjct: 1292 tgttctcgttgctg 1279
>ISFsp15
Length = 1695
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 44 cgaccgccagcccc 57
||||||||||||||
Sbjct: 964 cgaccgccagcccc 977
>ISFsp14
Length = 1696
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 44 cgaccgccagcccc 57
||||||||||||||
Sbjct: 964 cgaccgccagcccc 977
>ISAar21
Length = 1396
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 7 acgcctgctgcccg 20
||||||||||||||
Sbjct: 183 acgcctgctgcccg 196
>ISCARN44
Length = 1115
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 91 acttccgggctggc 104
||||||||||||||
Sbjct: 215 acttccgggctggc 228
>ISCARN28
Length = 1419
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 60 ggggttggcgccgc 73
||||||||||||||
Sbjct: 1230 ggggttggcgccgc 1217
>ISRosp4
Length = 2709
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 219 gggcggcaggtctg 232
||||||||||||||
Sbjct: 981 gggcggcaggtctg 968
>ISDge3
Length = 748
Score = 28.2 bits (14), Expect = 4.6
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 169 cgcaacacggtcaaccgg 186
||||||||||||| ||||
Sbjct: 248 cgcaacacggtcatccgg 265
>ISXoo13
Length = 1312
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 187 gccgactcgcccac 200
||||||||||||||
Sbjct: 448 gccgactcgcccac 435
>ISSsp4
Length = 2558
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 134 cgatctcgacatcc 147
||||||||||||||
Sbjct: 552 cgatctcgacatcc 539
>ISPre4
Length = 2575
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 188 ccgactcgcccacc 201
||||||||||||||
Sbjct: 471 ccgactcgcccacc 484
>ISBlma7
Length = 1279
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 125 gcaagcgaccgatc 138
||||||||||||||
Sbjct: 356 gcaagcgaccgatc 343
>ISSgr1
Length = 1544
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 219 gggcggcaggtctg 232
||||||||||||||
Sbjct: 184 gggcggcaggtctg 197
>ISSam1
Length = 1489
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 219 gggcggcaggtctg 232
||||||||||||||
Sbjct: 181 gggcggcaggtctg 194
>ISPpa5
Length = 2829
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 94 tccgggctggctgc 107
||||||||||||||
Sbjct: 549 tccgggctggctgc 562
>ISPa42
Length = 16941
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 62 ggttggcgccgctg 75
||||||||||||||
Sbjct: 4602 ggttggcgccgctg 4615
>ISMt2
Length = 2645
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 211 cccaccatgggcgg 224
||||||||||||||
Sbjct: 78 cccaccatgggcgg 91
>IS1452
Length = 1411
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 65 tggcgccgctgttc 78
||||||||||||||
Sbjct: 134 tggcgccgctgttc 147
>IS1112b
Length = 1055
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 76 ttctcgttgctgcc 89
||||||||||||||
Sbjct: 867 ttctcgttgctgcc 854
>IS1112a
Length = 1055
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 76 ttctcgttgctgcc 89
||||||||||||||
Sbjct: 867 ttctcgttgctgcc 854
>IS1112
Length = 1055
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 76 ttctcgttgctgcc 89
||||||||||||||
Sbjct: 867 ttctcgttgctgcc 854
>IS110
Length = 1558
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 219 gggcggcaggtctg 232
||||||||||||||
Sbjct: 185 gggcggcaggtctg 198
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_365_length_235_cov_0.917722_ID_5900
(235 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISClhy1 | IS1182 | Clostridium hylemonae | 34 | 0.074 | |
| ISBma1 | ISL3 | - | Burkholderia mallei | 32 | 0.29 |
| ISEc47 | IS66 | Escherichia coli | 30 | 1.2 | |
| ISCARN43 | IS1595 | ISPna2 | Metagenomic data from CARNOULES | 30 | 1.2 |
| ISEc23 | IS66 | Escherichia coli | 30 | 1.2 | |
| TnEc1 | Tn3 | Escherichia coli | 28 | 4.6 | |
| ISStu2 | ISAzo13 | Streptomyces turgidiscabies | 28 | 4.6 | |
| ISTni1 | ISKra4 | ISKra4 | Thioalkalivibrio nitratireducens | 28 | 4.6 |
| ISLhe11 | ISLre2 | Lactobacillus helveticus | 28 | 4.6 | |
| ISKpn18 | IS3 | IS3 | Klebsiella pneumoniae | 28 | 4.6 |
| ISMex13 | IS21 | Methylobacterium extorquens | 28 | 4.6 | |
| ISSse1 | IS3 | IS3 | Shewanella sediminis | 28 | 4.6 |
| ISGdi9 | IS481 | Gluconacetobacter diazotrophicus | 28 | 4.6 | |
| ISBthe5 | IS66 | Bacteroides thetaiotaomicron | 28 | 4.6 | |
| ISUnCu3 | IS21 | Uncultured bacterium | 28 | 4.6 | |
| ISPre3 | IS66 | Pseudomonas resinovorans | 28 | 4.6 | |
| ISGur15 | IS21 | Geobacter uraniumreducens | 28 | 4.6 | |
| ISBam1 | IS3 | IS150 | Burkholderia ambifaria | 28 | 4.6 |
| ISPpu7 | IS21 | - | Pseudomonas putida | 28 | 4.6 |
| IS2001 | ISL3 | - | Bifidobacterium lactis | 28 | 4.6 |
| IS1491 | IS21 | - | Pseudomonas alcaligenes | 28 | 4.6 |
>ISClhy1
Length = 1698
Score = 34.2 bits (17), Expect = 0.074
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 195 gccccttccgggatctc 211
|||||||||||||||||
Sbjct: 837 gccccttccgggatctc 821
>ISBma1
Length = 1305
Score = 32.2 bits (16), Expect = 0.29
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 83 gcaggccgccagcgta 98
||||||||||||||||
Sbjct: 426 gcaggccgccagcgta 441
>ISEc47
Length = 2541
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 192 tccgccccttccggg 206
|||||||||||||||
Sbjct: 1862 tccgccccttccggg 1876
>ISCARN43
Length = 1086
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 192 tccgccccttccggg 206
|||||||||||||||
Sbjct: 888 tccgccccttccggg 902
>ISEc23
Length = 2532
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 192 tccgccccttccggg 206
|||||||||||||||
Sbjct: 1853 tccgccccttccggg 1867
>TnEc1
Length = 3854
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 33 ataatcagtcgggt 46
||||||||||||||
Sbjct: 3003 ataatcagtcgggt 3016
>ISStu2
Length = 1760
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 101 gccttcaagaccga 114
||||||||||||||
Sbjct: 934 gccttcaagaccga 947
>ISTni1
Length = 2377
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 111 ccgaccaccccctg 124
||||||||||||||
Sbjct: 570 ccgaccaccccctg 557
>ISLhe11
Length = 1597
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 98 atcgccttcaagac 111
||||||||||||||
Sbjct: 672 atcgccttcaagac 659
>ISKpn18
Length = 1303
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 176 gaccatggttttca 189
||||||||||||||
Sbjct: 1008 gaccatggttttca 995
>ISMex13
Length = 2359
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 214 cctgggtgcgggcg 227
||||||||||||||
Sbjct: 2231 cctgggtgcgggcg 2218
>ISSse1
Length = 1251
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 45 gttggcagctgttc 58
||||||||||||||
Sbjct: 90 gttggcagctgttc 103
>ISGdi9
Length = 1044
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 190 ggtccgccccttcc 203
||||||||||||||
Sbjct: 197 ggtccgccccttcc 184
>ISBthe5
Length = 2537
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 136 cctcttccggagag 149
||||||||||||||
Sbjct: 231 cctcttccggagag 244
>ISUnCu3
Length = 2596
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 75 tcttcgaggcaggc 88
||||||||||||||
Sbjct: 1953 tcttcgaggcaggc 1940
>ISPre3
Length = 2957
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 83 gcaggccgccagcg 96
||||||||||||||
Sbjct: 693 gcaggccgccagcg 706
>ISGur15
Length = 2390
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 24 ccgctacggataat 37
||||||||||||||
Sbjct: 223 ccgctacggataat 210
>ISBam1
Length = 1448
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 90 gccagcgtatcgcc 103
||||||||||||||
Sbjct: 1151 gccagcgtatcgcc 1164
>ISPpu7
Length = 2598
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 75 tcttcgaggcaggc 88
||||||||||||||
Sbjct: 1954 tcttcgaggcaggc 1941
>IS2001
Length = 1406
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 131 ctcgccctcttccg 144
||||||||||||||
Sbjct: 1229 ctcgccctcttccg 1242
>IS1491
Length = 2481
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 75 tcttcgaggcaggc 88
||||||||||||||
Sbjct: 1884 tcttcgaggcaggc 1871
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_366_length_234_cov_1.36943_ID_5902
(234 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISRsp12 | Tn3 | Rhizhobium sp. | 32 | 0.29 | |
| ISEc53 | ISL3 | Escherichia coli | 30 | 1.2 | |
| ISAzs14 | IS630 | Azospirillum sp. | 30 | 1.2 | |
| ISSpu22 | IS110 | IS1111 | Shewanella putrefaciens | 30 | 1.2 |
| ISBsp4 | IS1182 | Bacillus sp. | 30 | 1.2 | |
| ISSpe2 | IS110 | IS1111 | Shewanella pealeana | 30 | 1.2 |
| ISSde4 | IS110 | IS1111 | Shewanella denitrificans | 30 | 1.2 |
| ISSod19 | IS110 | IS1111 | Shewanella oneidensis | 30 | 1.2 |
| ISPrst2 | IS5 | IS427 | Providencia stuartii | 28 | 4.6 |
| ISMsi4 | IS3 | IS407 | Methylocella silvestris | 28 | 4.6 |
| ISMsi2 | IS3 | IS407 | Methylocella silvestris | 28 | 4.6 |
| ISShes13 | IS3 | IS3 | Shewanella sp. | 28 | 4.6 |
| ISDsh2 | IS3 | IS407 | Dinoroseobacter shibae | 28 | 4.6 |
| ISRde1 | IS3 | IS51 | Roseobacter denitrificans | 28 | 4.6 |
| ISNha2 | IS701 | Nitrobacter hamburgensis | 28 | 4.6 | |
| IS1312 | IS3 | IS2 | Agrobacterium tumefaciens | 28 | 4.6 |
>ISRsp12
Length = 3701
Score = 32.2 bits (16), Expect = 0.29
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 7 cgttgatgaggttcatcgcc 26
||||||| ||||||||||||
Sbjct: 2842 cgttgatcaggttcatcgcc 2823
>ISEc53
Length = 1885
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 126 catttccattcgaga 140
|||||||||||||||
Sbjct: 1738 catttccattcgaga 1724
>ISAzs14
Length = 1176
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 12 atgaggttcatcgcc 26
|||||||||||||||
Sbjct: 846 atgaggttcatcgcc 832
>ISSpu22
Length = 1373
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 92 cattgcgaggccgat 106
|||||||||||||||
Sbjct: 41 cattgcgaggccgat 27
>ISBsp4
Length = 1878
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 35 ataggcgatctcatc 49
|||||||||||||||
Sbjct: 895 ataggcgatctcatc 881
>ISSpe2
Length = 1383
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 92 cattgcgaggccgat 106
|||||||||||||||
Sbjct: 41 cattgcgaggccgat 27
>ISSde4
Length = 1379
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 92 cattgcgaggccgat 106
|||||||||||||||
Sbjct: 41 cattgcgaggccgat 27
>ISSod19
Length = 1379
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 92 cattgcgaggccgat 106
|||||||||||||||
Sbjct: 46 cattgcgaggccgat 32
>ISPrst2
Length = 867
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 12 atgaggttcatcgc 25
||||||||||||||
Sbjct: 662 atgaggttcatcgc 649
>ISMsi4
Length = 1332
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 160 gctcgcccatggcg 173
||||||||||||||
Sbjct: 1232 gctcgcccatggcg 1219
>ISMsi2
Length = 1332
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 160 gctcgcccatggcg 173
||||||||||||||
Sbjct: 1232 gctcgcccatggcg 1219
>ISShes13
Length = 1305
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 11 gatgaggttcatcg 24
||||||||||||||
Sbjct: 1246 gatgaggttcatcg 1259
>ISDsh2
Length = 1203
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 163 cgcccatggcgatc 176
||||||||||||||
Sbjct: 648 cgcccatggcgatc 661
>ISRde1
Length = 1238
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 221 agctatgaccgacc 234
||||||||||||||
Sbjct: 683 agctatgaccgacc 670
>ISNha2
Length = 1455
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 40 cgatctcatcgctc 53
||||||||||||||
Sbjct: 1361 cgatctcatcgctc 1374
>IS1312
Length = 1317
Score = 28.2 bits (14), Expect = 4.6
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 137 gagatgatcgccttgatt 154
||||||||||| ||||||
Sbjct: 594 gagatgatcgctttgatt 577
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_367_length_234_cov_1.38217_ID_5904
(234 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISSfr3 | ISKra4 | ISAzba1 | Sinorhizobium fredii | 34 | 0.074 |
| ISAcas1 | ISKra4 | ISAzba1 | Acaryochloris sp. | 32 | 0.29 |
| ISPca2 | IS3 | IS51 | Pelobacter carbinolicus | 32 | 0.29 |
| ISGsu6 | IS21 | Geobacter sulfurreducens | 32 | 0.29 | |
| ISRsp12 | Tn3 | Rhizhobium sp. | 30 | 1.2 | |
| ISSdi1 | IS1182 | Streptomyces diastaticus | 30 | 1.2 | |
| ISDra3 | IS630 | Deinococcus radiodurans | 30 | 1.2 | |
| ISSco2 | IS481 | Streptomyces coelicolor | 30 | 1.2 | |
| ISPa45 | IS4 | IS4 | Pseudomonas aeruginosa | 30 | 1.2 |
| ISStma17 | IS3 | IS51 | Stenotrophomonas maltophilia | 28 | 4.6 |
| ISVsp16 | IS1182 | Verrucomicrobium spinosum | 28 | 4.6 | |
| ISHwa9 | IS4 | IS4Sa | Haloquadratum walsbyi | 28 | 4.6 |
| ISHwa8 | IS4 | IS4Sa | Haloquadratum walsbyi | 28 | 4.6 |
| ISNtsp1 | IS5 | IS5 | Nitrosomonas sp. | 28 | 4.6 |
| ISRop2 | ISAzo13 | Rhodococcus opacus | 28 | 4.6 | |
| ISAnsp11 | IS3 | IS3 | Anaeromyxobacter sp. | 28 | 4.6 |
| ISMex37 | IS3 | IS150 | Methylobacterium extorquens | 28 | 4.6 |
| ISMex40 | IS5 | IS1031 | Methylobacterium extorquens | 28 | 4.6 |
| ISMdi7 | IS21 | Methylobacterium dichloromethanicum | 28 | 4.6 | |
| ISRce1 | ISAs1 | Rhodospirillum centenum | 28 | 4.6 | |
| ISAzo40 | IS1380 | Azoarcus sp. | 28 | 4.6 | |
| ISThsp9 | Tn3 | Thiomonas sp. | 28 | 4.6 | |
| ISCARN24 | IS21 | Metagenomic data from CARNOULES | 28 | 4.6 | |
| ISCARN22 | IS66 | Metagenomic data from CARNOULES | 28 | 4.6 | |
| ISXau4 | IS66 | Xanthobacter autotrophicus | 28 | 4.6 | |
| ISGdi5 | IS630 | Gluconacetobacter diazotrophicus | 28 | 4.6 | |
| ISAli13 | IS21 | Azospirillum lipoferum | 28 | 4.6 | |
| ISPa32 | IS3 | IS407 | Pseudomonas aeruginosa | 28 | 4.6 |
| ISRm31 | IS701 | Sinorhizobium meliloti | 28 | 4.6 | |
| IS231T | IS4 | IS231 | Bacillus anthracis | 28 | 4.6 |
| ISXc4 | Tn3 | - | Xanthomonas campestris | 28 | 4.6 |
| IS71 | IS66 | - | Agrobacterium tumefaciens | 28 | 4.6 |
>ISSfr3
Length = 1448
Score = 34.2 bits (17), Expect = 0.074
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 141 gcgcctgagtttgccgg 157
|||||||||||||||||
Sbjct: 1165 gcgcctgagtttgccgg 1149
>ISAcas1
Length = 1467
Score = 32.2 bits (16), Expect = 0.29
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 83 atctggcgctggtgttgatc 102
|||||||| |||||||||||
Sbjct: 795 atctggcgatggtgttgatc 776
>ISPca2
Length = 1218
Score = 32.2 bits (16), Expect = 0.29
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 78 tgccgatctggcgctg 93
||||||||||||||||
Sbjct: 808 tgccgatctggcgctg 823
>ISGsu6
Length = 1975
Score = 32.2 bits (16), Expect = 0.29
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 121 gccgagcgcgatggcg 136
||||||||||||||||
Sbjct: 1477 gccgagcgcgatggcg 1462
>ISRsp12
Length = 3701
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 220 ctgctcgacgaagcg 234
|||||||||||||||
Sbjct: 1228 ctgctcgacgaagcg 1214
>ISSdi1
Length = 1789
Score = 30.2 bits (15), Expect = 1.2
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 79 gccgatctggcgctggtgt 97
|||| ||||||||||||||
Sbjct: 274 gccggtctggcgctggtgt 292
>ISDra3
Length = 1065
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 218 tgctgctcgacgaag 232
|||||||||||||||
Sbjct: 840 tgctgctcgacgaag 826
>ISSco2
Length = 1964
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 181 gcgcgggcgctgggc 195
|||||||||||||||
Sbjct: 666 gcgcgggcgctgggc 652
>ISPa45
Length = 1637
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 213 gccggtgctgctcga 227
|||||||||||||||
Sbjct: 735 gccggtgctgctcga 721
>ISStma17
Length = 1321
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 122 ccgagcgcgatggc 135
||||||||||||||
Sbjct: 933 ccgagcgcgatggc 946
>ISVsp16
Length = 1578
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 209 tggtgccggtgctg 222
||||||||||||||
Sbjct: 992 tggtgccggtgctg 1005
>ISHwa9
Length = 1511
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 219 gctgctcgacgaag 232
||||||||||||||
Sbjct: 152 gctgctcgacgaag 165
>ISHwa8
Length = 1509
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 219 gctgctcgacgaag 232
||||||||||||||
Sbjct: 151 gctgctcgacgaag 164
>ISNtsp1
Length = 1497
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 141 gcgcctgagtttgc 154
||||||||||||||
Sbjct: 1201 gcgcctgagtttgc 1188
>ISRop2
Length = 2171
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 218 tgctgctcgacgaa 231
||||||||||||||
Sbjct: 1619 tgctgctcgacgaa 1632
>ISAnsp11
Length = 1510
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 175 gaggtcgcgcgggc 188
||||||||||||||
Sbjct: 364 gaggtcgcgcgggc 377
>ISMex37
Length = 1510
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 81 cgatctggcgctgg 94
||||||||||||||
Sbjct: 1014 cgatctggcgctgg 1027
>ISMex40
Length = 918
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 210 ggtgccggtgctgc 223
||||||||||||||
Sbjct: 596 ggtgccggtgctgc 609
>ISMdi7
Length = 2568
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 120 tgccgagcgcgatg 133
||||||||||||||
Sbjct: 1946 tgccgagcgcgatg 1933
>ISRce1
Length = 1267
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 214 ccggtgctgctcga 227
||||||||||||||
Sbjct: 581 ccggtgctgctcga 594
>ISAzo40
Length = 1694
Score = 28.2 bits (14), Expect = 4.6
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 181 gcgcgggcgctgggccgg 198
||||| ||||||||||||
Sbjct: 777 gcgcgagcgctgggccgg 794
>ISThsp9
Length = 6215
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 207 cgtggtgccggtgc 220
||||||||||||||
Sbjct: 3897 cgtggtgccggtgc 3910
>ISCARN24
Length = 2778
Score = 28.2 bits (14), Expect = 4.6
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 98 tgatcggcccgcgctggc 115
|||| |||||||||||||
Sbjct: 953 tgataggcccgcgctggc 936
>ISCARN22
Length = 2674
Score = 28.2 bits (14), Expect = 4.6
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 173 tggaggtcgcgcgggcgc 190
|||||||||||| |||||
Sbjct: 337 tggaggtcgcgcaggcgc 354
>ISXau4
Length = 2458
Score = 28.2 bits (14), Expect = 4.6
Identities = 20/22 (90%)
Strand = Plus / Minus
Query: 123 cgagcgcgatggcgtgcagcgc 144
||||||||||||| ||| ||||
Sbjct: 1522 cgagcgcgatggcctgccgcgc 1501
>ISGdi5
Length = 1160
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 125 agcgcgatggcgtg 138
||||||||||||||
Sbjct: 394 agcgcgatggcgtg 407
>ISAli13
Length = 2756
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 212 tgccggtgctgctc 225
||||||||||||||
Sbjct: 1753 tgccggtgctgctc 1766
>ISPa32
Length = 1236
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 48 tgccgtcttctgct 61
||||||||||||||
Sbjct: 68 tgccgtcttctgct 55
>ISRm31
Length = 1426
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 181 gcgcgggcgctggg 194
||||||||||||||
Sbjct: 288 gcgcgggcgctggg 301
>IS231T
Length = 2066
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 62 tgaaaaaattgcac 75
||||||||||||||
Sbjct: 39 tgaaaaaattgcac 52
>ISXc4
Length = 6938
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 207 cgtggtgccggtgc 220
||||||||||||||
Sbjct: 3902 cgtggtgccggtgc 3915
>IS71
Length = 2386
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 5 ggaagagcacacgt 18
||||||||||||||
Sbjct: 660 ggaagagcacacgt 673
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_368_length_234_cov_1.38854_ID_5286
(234 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISPa43 | Tn3 | Pseudomonas aeruginosa | 32 | 0.29 | |
| ISGdi15 | IS110 | IS1111 | Gluconacetobacter diazotrophicus | 32 | 0.29 |
| ISHwa29 | IS200/IS605 | IS1341 | Haloquadratum walsbyi | 30 | 1.2 |
| ISPa54 | IS5 | IS5 | Pseudomonas aeruginosa | 30 | 1.2 |
| ISPosp3 | IS1595 | ISSod11 | Polaromonas sp. | 30 | 1.2 |
| ISRfr1 | IS630 | - | Rhizobium fredii | 30 | 1.2 |
| ISBj12 | ISNCY | ISLbi1 | Bradyrhizobium japonicum | 28 | 4.6 |
| ISSm4 | ISL3 | Serratia marcescens | 28 | 4.6 | |
| ISRjo4 | IS256 | Rhodococcus jostii | 28 | 4.6 | |
| ISCef7 | IS1380 | Corynebacterium efficiens | 28 | 4.6 | |
| ISOcsp1 | IS21 | Ochrobactrum sp. | 28 | 4.6 | |
| ISMac22 | IS5 | IS5 | Methanosarcina acetivorans | 28 | 4.6 |
| IS13869 | ISL3 | - | Brevibacterium lactofermentum | 28 | 4.6 |
>ISPa43
Length = 19903
Score = 32.2 bits (16), Expect = 0.29
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 218 gctggcgctgggcctg 233
||||||||||||||||
Sbjct: 7046 gctggcgctgggcctg 7061
>ISGdi15
Length = 1602
Score = 32.2 bits (16), Expect = 0.29
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 218 gctggcgctgggcctg 233
||||||||||||||||
Sbjct: 306 gctggcgctgggcctg 321
>ISHwa29
Length = 1670
Score = 30.2 bits (15), Expect = 1.2
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 169 tcctcgaatacttcgacgg 187
||||||||||| |||||||
Sbjct: 1102 tcctcgaatacctcgacgg 1120
>ISPa54
Length = 1159
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 179 cttcgacggcttctc 193
|||||||||||||||
Sbjct: 802 cttcgacggcttctc 788
>ISPosp3
Length = 1050
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 28 tggtgccgtttgtcc 42
|||||||||||||||
Sbjct: 644 tggtgccgtttgtcc 658
>ISRfr1
Length = 1136
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 91 gcctcaagcgcggcg 105
|||||||||||||||
Sbjct: 973 gcctcaagcgcggcg 987
>ISBj12
Length = 1743
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 145 cgaatgcgctgctg 158
||||||||||||||
Sbjct: 1537 cgaatgcgctgctg 1550
>ISSm4
Length = 9109
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 70 ttgaagagctggaa 83
||||||||||||||
Sbjct: 8166 ttgaagagctggaa 8179
>ISRjo4
Length = 1458
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 136 aaatcccatcgaat 149
||||||||||||||
Sbjct: 1158 aaatcccatcgaat 1171
>ISCef7
Length = 1687
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 147 aatgcgctgctggc 160
||||||||||||||
Sbjct: 631 aatgcgctgctggc 644
>ISOcsp1
Length = 1955
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 218 gctggcgctgggcc 231
||||||||||||||
Sbjct: 535 gctggcgctgggcc 548
>ISMac22
Length = 1156
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 111 ggcctgaagctgat 124
||||||||||||||
Sbjct: 227 ggcctgaagctgat 240
>IS13869
Length = 1437
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 56 ggcaaaagcggtag 69
||||||||||||||
Sbjct: 239 ggcaaaagcggtag 226
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_369_length_234_cov_0.923567_ID_5906
(234 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISMno4 | IS66 | ISBst12 | Methylobacterium nodulans | 34 | 0.074 |
| ISMno3 | IS66 | ISBst12 | Methylobacterium nodulans | 34 | 0.074 |
| ISMno2 | IS66 | ISBst12 | Methylobacterium nodulans | 34 | 0.074 |
| ISRle12 | IS256 | Rhizobium leguminosarum | 32 | 0.29 | |
| ISMdi7 | IS21 | Methylobacterium dichloromethanicum | 32 | 0.29 | |
| ISSst2 | IS1595 | ISNha5 | Sagittula stellata | 32 | 0.29 |
| ISRel7 | IS110 | IS1111 | Rhizobium etli | 30 | 1.2 |
| ISHbo2 | IS200/IS605 | IS1341 | Halogeometricum borinquense | 30 | 1.2 |
| ISPa43 | Tn3 | Pseudomonas aeruginosa | 30 | 1.2 | |
| ISAzs29 | Tn3 | Azospirillum sp. | 30 | 1.2 | |
| ISPso1 | IS256 | Paracoccus solventivorans | 30 | 1.2 | |
| ISGlo5 | IS5 | Geobacter lovleyi | 30 | 1.2 | |
| ISArch20 | ISAzo13 | Uncultured archaeon | 30 | 1.2 | |
| ISMex14 | IS256 | Methylobacterium extorquens | 30 | 1.2 | |
| IS884 | IS110 | IS1111 | Ralstonia eutropha | 30 | 1.2 |
| ISPa1328 | IS256 | Pseudomonas aeruginosa | 30 | 1.2 | |
| IS1648 | IS5 | IS427 | Streptomyces coelicolor | 30 | 1.2 |
| TnAs3 | Tn3 | Aeromonas salmonicida | 28 | 4.6 | |
| ISSoc9 | IS200/IS605 | IS1341 | Synechococcus sp | 28 | 4.6 |
| ISHma17 | IS200/IS605 | IS605 | Haloarcula marismortui | 28 | 4.6 |
| ISPna6 | IS701 | ISAba11 | Polaromonas naphthalenivorans | 28 | 4.6 |
| ISHvo17 | IS200/IS605 | IS1341 | Haloferax volcanii | 28 | 4.6 |
| ISAfe13 | ISKra4 | ISAzba1 | Acidithiobacillus ferrivorans | 28 | 4.6 |
| ISAzs18 | IS66 | Azospirillum sp. | 28 | 4.6 | |
| ISRel21 | IS3 | IS407 | Rhizobium etli | 28 | 4.6 |
| ISMno22 | IS110 | IS1111 | Methylobacterium nodulans | 28 | 4.6 |
| ISMtsp18 | IS3 | IS2 | Methylobacterium sp. | 28 | 4.6 |
| ISMav8 | IS1380 | Mycobacterium avium | 28 | 4.6 | |
| ISAzba8 | IS256 | Azospirillum brasilense | 28 | 4.6 | |
| ISMsm10 | IS1380 | Mycobacterium smegmatis | 28 | 4.6 | |
| ISRer1 | IS1380 | Rhodococcus erythropolis | 28 | 4.6 | |
| ISPosp7 | IS1380 | Polaromonas sp. | 28 | 4.6 | |
| ISMdi27 | IS21 | Methylobacterium dichloromethanicum | 28 | 4.6 | |
| ISThsp13 | IS1380 | Thiomonas sp. | 28 | 4.6 | |
| ISAisp4 | IS110 | Acidovorax sp. | 28 | 4.6 | |
| ISThsp9 | Tn3 | Thiomonas sp. | 28 | 4.6 | |
| ISThsp5 | IS21 | Thiomonas sp. | 28 | 4.6 | |
| ISSba14 | Tn3 | Shewanella baltica | 28 | 4.6 | |
| ISDsh3 | IS1595 | ISNha5 | Dinoroseobacter shibae | 28 | 4.6 |
| ISRta2 | IS256 | Ralstonia taiwanensis | 28 | 4.6 | |
| ISRle5 | IS3 | IS407 | Rhizobium leguminosarum | 28 | 4.6 |
| ISBcen23 | IS3 | IS407 | Burkholderia cenocepacia | 28 | 4.6 |
| ISMca5 | IS256 | Methylococcus capsulatus | 28 | 4.6 | |
| IS1016C2 | IS1595 | IS1016 | Haemophilus somnus | 28 | 4.6 |
| ISMma1 | ISH3 | Methanosarcina mazei | 28 | 4.6 | |
| ISBcen3 | IS110 | IS1111 | Burkholderia cenocepacia | 28 | 4.6 |
| ISRso7 | IS256 | - | Ralstonia solanacearum | 28 | 4.6 |
>ISMno4
Length = 1385
Score = 34.2 bits (17), Expect = 0.074
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 13 gcaccagctcgatcagc 29
|||||||||||||||||
Sbjct: 131 gcaccagctcgatcagc 115
>ISMno3
Length = 1364
Score = 34.2 bits (17), Expect = 0.074
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 13 gcaccagctcgatcagc 29
|||||||||||||||||
Sbjct: 107 gcaccagctcgatcagc 91
>ISMno2
Length = 1419
Score = 34.2 bits (17), Expect = 0.074
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 13 gcaccagctcgatcagc 29
|||||||||||||||||
Sbjct: 165 gcaccagctcgatcagc 149
>ISRle12
Length = 1297
Score = 32.2 bits (16), Expect = 0.29
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 174 tcgatccacaggccga 189
||||||||||||||||
Sbjct: 660 tcgatccacaggccga 645
>ISMdi7
Length = 2568
Score = 32.2 bits (16), Expect = 0.29
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 109 ggatgccgcccggcgc 124
||||||||||||||||
Sbjct: 955 ggatgccgcccggcgc 940
>ISSst2
Length = 3454
Score = 32.2 bits (16), Expect = 0.29
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 174 tcgatccacaggccga 189
||||||||||||||||
Sbjct: 3233 tcgatccacaggccga 3218
>ISRel7
Length = 1342
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 214 ccgccggcttcttgt 228
|||||||||||||||
Sbjct: 906 ccgccggcttcttgt 920
>ISHbo2
Length = 1671
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 147 agccgctcgtcggcg 161
|||||||||||||||
Sbjct: 319 agccgctcgtcggcg 305
>ISPa43
Length = 19903
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 218 cggcttcttgtcggc 232
|||||||||||||||
Sbjct: 7124 cggcttcttgtcggc 7110
>ISAzs29
Length = 3897
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 156 tcggcggtgggcagg 170
|||||||||||||||
Sbjct: 931 tcggcggtgggcagg 917
>ISPso1
Length = 1400
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 15 accagctcgatcagc 29
|||||||||||||||
Sbjct: 181 accagctcgatcagc 167
>ISGlo5
Length = 1325
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 62 ggccttggggtgcat 76
|||||||||||||||
Sbjct: 1180 ggccttggggtgcat 1194
>ISArch20
Length = 1300
Score = 30.2 bits (15), Expect = 1.2
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 139 gcgaggagagccgctcgtc 157
||||||| |||||||||||
Sbjct: 1064 gcgaggaaagccgctcgtc 1082
>ISMex14
Length = 1381
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 52 attcgtcgttggcct 66
|||||||||||||||
Sbjct: 1226 attcgtcgttggcct 1212
>IS884
Length = 1424
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 205 tggtgtgcaccgccg 219
|||||||||||||||
Sbjct: 301 tggtgtgcaccgccg 287
>ISPa1328
Length = 1328
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 175 cgatccacaggccga 189
|||||||||||||||
Sbjct: 693 cgatccacaggccga 679
>IS1648
Length = 969
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 31 cgccttcgccggcga 45
|||||||||||||||
Sbjct: 519 cgccttcgccggcga 505
>TnAs3
Length = 18735
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 123 gcgaagcgcacgcc 136
||||||||||||||
Sbjct: 4468 gcgaagcgcacgcc 4455
>ISSoc9
Length = 1514
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 174 tcgatccacaggcc 187
||||||||||||||
Sbjct: 1407 tcgatccacaggcc 1394
>ISHma17
Length = 2009
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 149 ccgctcgtcggcgg 162
||||||||||||||
Sbjct: 1154 ccgctcgtcggcgg 1141
>ISPna6
Length = 1124
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 95 ggctgcgcccttgc 108
||||||||||||||
Sbjct: 435 ggctgcgcccttgc 422
>ISHvo17
Length = 1508
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 121 gcgcgaagcgcacg 134
||||||||||||||
Sbjct: 879 gcgcgaagcgcacg 866
>ISAfe13
Length = 2868
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 2 cggcggcgcctgca 15
||||||||||||||
Sbjct: 1894 cggcggcgcctgca 1907
>ISAzs18
Length = 2633
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 5 cggcgcctgcacca 18
||||||||||||||
Sbjct: 1524 cggcgcctgcacca 1511
>ISRel21
Length = 1200
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 102 cccttgcggatgcc 115
||||||||||||||
Sbjct: 1033 cccttgcggatgcc 1046
>ISMno22
Length = 1426
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 7 gcgcctgcaccagc 20
||||||||||||||
Sbjct: 223 gcgcctgcaccagc 210
>ISMtsp18
Length = 1341
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 129 cgcacgccttgcga 142
||||||||||||||
Sbjct: 1162 cgcacgccttgcga 1175
>ISMav8
Length = 2064
Score = 28.2 bits (14), Expect = 4.6
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 156 tcggcggtgggcaggtcg 173
||||||||||||| ||||
Sbjct: 1235 tcggcggtgggcaagtcg 1218
>ISAzba8
Length = 1321
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 174 tcgatccacaggcc 187
||||||||||||||
Sbjct: 669 tcgatccacaggcc 656
>ISMsm10
Length = 1661
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 95 ggctgcgcccttgc 108
||||||||||||||
Sbjct: 750 ggctgcgcccttgc 737
>ISRer1
Length = 1687
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 19 gctcgatcagcacg 32
||||||||||||||
Sbjct: 25 gctcgatcagcacg 12
>ISPosp7
Length = 1612
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 19 gctcgatcagcacg 32
||||||||||||||
Sbjct: 1227 gctcgatcagcacg 1214
>ISMdi27
Length = 2476
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 115 cgcccggcgcgaag 128
||||||||||||||
Sbjct: 491 cgcccggcgcgaag 478
>ISThsp13
Length = 1583
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 157 cggcggtgggcagg 170
||||||||||||||
Sbjct: 396 cggcggtgggcagg 409
>ISAisp4
Length = 1614
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 101 gcccttgcggatgc 114
||||||||||||||
Sbjct: 1242 gcccttgcggatgc 1229
>ISThsp9
Length = 6215
Score = 28.2 bits (14), Expect = 4.6
Identities = 23/26 (88%)
Strand = Plus / Minus
Query: 100 cgcccttgcggatgccgcccggcgcg 125
||||||||||| ||||||| |||||
Sbjct: 1271 cgcccttgcggccgccgccctgcgcg 1246
>ISThsp5
Length = 2652
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 12 tgcaccagctcgat 25
||||||||||||||
Sbjct: 1272 tgcaccagctcgat 1259
>ISSba14
Length = 3815
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 2 cggcggcgcctgca 15
||||||||||||||
Sbjct: 2002 cggcggcgcctgca 2015
>ISDsh3
Length = 3472
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 20 ctcgatcagcacgc 33
||||||||||||||
Sbjct: 1445 ctcgatcagcacgc 1458
>ISRta2
Length = 1386
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 174 tcgatccacaggcc 187
||||||||||||||
Sbjct: 707 tcgatccacaggcc 694
>ISRle5
Length = 1196
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 102 cccttgcggatgcc 115
||||||||||||||
Sbjct: 1029 cccttgcggatgcc 1042
>ISBcen23
Length = 1195
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 118 ccggcgcgaagcgc 131
||||||||||||||
Sbjct: 346 ccggcgcgaagcgc 359
>ISMca5
Length = 1390
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 174 tcgatccacaggcc 187
||||||||||||||
Sbjct: 712 tcgatccacaggcc 699
>IS1016C2
Length = 713
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 17 cagctcgatcagca 30
||||||||||||||
Sbjct: 113 cagctcgatcagca 126
>ISMma1
Length = 1500
Score = 28.2 bits (14), Expect = 4.6
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 121 gcgcgaagcgcacgcctt 138
||||||||||| ||||||
Sbjct: 1264 gcgcgaagcgctcgcctt 1247
>ISBcen3
Length = 1413
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 19 gctcgatcagcacg 32
||||||||||||||
Sbjct: 654 gctcgatcagcacg 667
>ISRso7
Length = 1344
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 174 tcgatccacaggcc 187
||||||||||||||
Sbjct: 697 tcgatccacaggcc 684
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_370_length_234_cov_0.929936_ID_5908
(234 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISAlac1 | ISLre2 | Alicyclobacillus acidocaldarius | 36 | 0.019 | |
| ISGvi6 | IS1182 | Gloeobacter violaceus | 34 | 0.074 | |
| ISAzs36 | IS481 | Azospirillum sp. | 32 | 0.29 | |
| ISAzs29 | Tn3 | Azospirillum sp. | 32 | 0.29 | |
| ISEfa12 | IS1182 | Enterococcus faecium | 32 | 0.29 | |
| ISArsp5 | IS110 | Arthrobacter sp. | 32 | 0.29 | |
| ISRel3 | IS21 | Rhizobium etli | 32 | 0.29 | |
| ISAzs2 | IS21 | Azospirillum sp. | 30 | 1.2 | |
| ISRpa9 | IS5 | IS5 | Rhodopseudomonas palustris | 30 | 1.2 |
| ISRpa8 | IS5 | IS5 | Rhodopseudomonas palustris | 30 | 1.2 |
| ISCARN14 | IS5 | IS1031 | Metagenomic data from CARNOULES | 30 | 1.2 |
| ISAli18 | ISL3 | Azospirillum lipoferum | 30 | 1.2 | |
| ISSag4 | IS3 | IS150 | Streptococcus agalactiae | 30 | 1.2 |
| ISSag2 | IS3 | IS150 | Streptococcus agalactiae | 30 | 1.2 |
| ISSdy2 | IS3 | IS150 | Streptococcus dysgalactiae | 30 | 1.2 |
| IS231Y | IS4 | IS231 | Bacillus cereus | 30 | 1.2 |
| ISSdy1 | IS3 | IS150 | Streptococcus dysgalactiae | 30 | 1.2 |
| TnXo19 | Tn3 | Xanthomonas oryzae | 28 | 4.6 | |
| ISAeme22 | IS4 | IS50 | Aeromonas media | 28 | 4.6 |
| ISShdy2 | IS66 | Shigella dysenteriae | 28 | 4.6 | |
| ISSoc12 | IS200/IS605 | IS1341 | Synechococcus sp | 28 | 4.6 |
| ISBj7 | IS6 | Bradyrhizobium japonicum | 28 | 4.6 | |
| ISLefe1 | IS1380 | Leptospirillum ferrooxidans | 28 | 4.6 | |
| ISSri1 | ISKra4 | ISKra4 | Streptomyces rimosus | 28 | 4.6 |
| ISRba9 | IS256 | Rhodopirellula baltica | 28 | 4.6 | |
| ISNha10 | IS256 | Nitrobacter hamburgensis | 28 | 4.6 | |
| ISApr14 | IS256 | alpha proteobacterium | 28 | 4.6 | |
| ISAzs5 | ISAs1 | Azospirillum sp. | 28 | 4.6 | |
| ISAzs1 | IS701 | Azospirillum sp. | 28 | 4.6 | |
| ISStau7 | IS1182 | Stigmatella aurantiaca | 28 | 4.6 | |
| ISBmu23 | IS5 | IS5 | Burkholderia multivorans | 28 | 4.6 |
| ISRssp10 | IS5 | Roseovarius sp. | 28 | 4.6 | |
| ISArsp3 | IS110 | Arthrobacter sp. | 28 | 4.6 | |
| ISMex40 | IS5 | IS1031 | Methylobacterium extorquens | 28 | 4.6 |
| ISMdi20 | IS630 | Methylobacterium dichloromethanicum | 28 | 4.6 | |
| ISStma11 | ISL3 | Stenotrophomonas maltophilia | 28 | 4.6 | |
| ISAzo34 | IS256 | Azoarcus sp. | 28 | 4.6 | |
| ISRpa2 | IS3 | IS407 | Rhodopseudomonas palustris | 28 | 4.6 |
| ISSav2 | IS701 | Streptomyces avermitilis | 28 | 4.6 | |
| ISRba2 | IS4 | IS50 | Rhodopirellula baltica | 28 | 4.6 |
| ISFal1 | ISL3 | Frankia alni | 28 | 4.6 | |
| ISH18 | IS110 | IS1111 | Haloarcula marismortui | 28 | 4.6 |
| ISEch4 | IS110 | IS1111 | Erwinia chrysanthemi | 28 | 4.6 |
| ISGsu7 | IS3 | Geobacter sulfurreducens | 28 | 4.6 | |
| ISPa42 | Tn3 | Pseudomonas aeruginosa | 28 | 4.6 | |
| IS50R | IS4 | IS50 | Escherichia coli | 28 | 4.6 |
| IS4811 | IS5 | IS1031 | Streptomyces lividans | 28 | 4.6 |
>ISAlac1
Length = 1608
Score = 36.2 bits (18), Expect = 0.019
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 27 cgccacggccaccttcaa 44
||||||||||||||||||
Sbjct: 772 cgccacggccaccttcaa 755
>ISGvi6
Length = 1662
Score = 34.2 bits (17), Expect = 0.074
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 20 cgcgatgcgccacggcc 36
|||||||||||||||||
Sbjct: 944 cgcgatgcgccacggcc 960
>ISAzs36
Length = 2622
Score = 32.2 bits (16), Expect = 0.29
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 188 cgaagctgccgcccga 203
||||||||||||||||
Sbjct: 1528 cgaagctgccgcccga 1543
>ISAzs29
Length = 3897
Score = 32.2 bits (16), Expect = 0.29
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 6 cggcaccgcggcatcg 21
||||||||||||||||
Sbjct: 280 cggcaccgcggcatcg 265
>ISEfa12
Length = 1517
Score = 32.2 bits (16), Expect = 0.29
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 75 gccataggcttttttg 90
||||||||||||||||
Sbjct: 1442 gccataggcttttttg 1427
>ISArsp5
Length = 1426
Score = 32.2 bits (16), Expect = 0.29
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 211 tgctgccacagttggc 226
||||||||||||||||
Sbjct: 922 tgctgccacagttggc 937
>ISRel3
Length = 2308
Score = 32.2 bits (16), Expect = 0.29
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 177 gtcgttcagatcgaag 192
||||||||||||||||
Sbjct: 2088 gtcgttcagatcgaag 2103
>ISAzs2
Length = 2609
Score = 30.2 bits (15), Expect = 1.2
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 197 cgcccgactcgacctgctg 215
|||||| ||||||||||||
Sbjct: 2175 cgcccggctcgacctgctg 2193
>ISRpa9
Length = 1539
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 60 ggtgtcgaccaccac 74
|||||||||||||||
Sbjct: 619 ggtgtcgaccaccac 605
>ISRpa8
Length = 1540
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 60 ggtgtcgaccaccac 74
|||||||||||||||
Sbjct: 620 ggtgtcgaccaccac 606
>ISCARN14
Length = 1226
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 59 gggtgtcgaccacca 73
|||||||||||||||
Sbjct: 784 gggtgtcgaccacca 770
>ISAli18
Length = 1752
Score = 30.2 bits (15), Expect = 1.2
Identities = 22/23 (95%), Gaps = 1/23 (4%)
Strand = Plus / Plus
Query: 195 gccgcccgactcgacctgctgcc 217
||||||||| |||||||||||||
Sbjct: 626 gccgcccga-tcgacctgctgcc 647
>ISSag4
Length = 1221
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 34 gccaccttcaaacca 48
|||||||||||||||
Sbjct: 626 gccaccttcaaacca 640
>ISSag2
Length = 1220
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 34 gccaccttcaaacca 48
|||||||||||||||
Sbjct: 625 gccaccttcaaacca 639
>ISSdy2
Length = 1218
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 34 gccaccttcaaacca 48
|||||||||||||||
Sbjct: 624 gccaccttcaaacca 638
>IS231Y
Length = 1645
Score = 30.2 bits (15), Expect = 1.2
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 212 gctgccacagttggcacac 230
|||||||||||||| ||||
Sbjct: 657 gctgccacagttgggacac 639
>ISSdy1
Length = 1218
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 34 gccaccttcaaacca 48
|||||||||||||||
Sbjct: 624 gccaccttcaaacca 638
>TnXo19
Length = 18767
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 86 ttttggtggcgcgg 99
||||||||||||||
Sbjct: 14591 ttttggtggcgcgg 14578
>ISAeme22
Length = 1534
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 96 gcggatggtctcga 109
||||||||||||||
Sbjct: 1142 gcggatggtctcga 1155
>ISShdy2
Length = 2496
Score = 28.2 bits (14), Expect = 4.6
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 122 gcgaactgctgccggaga 139
|||| |||||||||||||
Sbjct: 1141 gcgacctgctgccggaga 1158
>ISSoc12
Length = 1442
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 126 actgctgccggaga 139
||||||||||||||
Sbjct: 570 actgctgccggaga 557
>ISBj7
Length = 824
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 110 ggcggtcggcatgc 123
||||||||||||||
Sbjct: 62 ggcggtcggcatgc 49
>ISLefe1
Length = 1710
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 152 cggacagcgcgtcg 165
||||||||||||||
Sbjct: 804 cggacagcgcgtcg 817
>ISSri1
Length = 2269
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 106 tcgaggcggtcggc 119
||||||||||||||
Sbjct: 2072 tcgaggcggtcggc 2059
>ISRba9
Length = 1450
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 185 gatcgaagctgccg 198
||||||||||||||
Sbjct: 961 gatcgaagctgccg 974
>ISNha10
Length = 1428
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 149 agccggacagcgcg 162
||||||||||||||
Sbjct: 493 agccggacagcgcg 480
>ISApr14
Length = 1316
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 185 gatcgaagctgccg 198
||||||||||||||
Sbjct: 328 gatcgaagctgccg 315
>ISAzs5
Length = 1333
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 85 tttttggtggcgcg 98
||||||||||||||
Sbjct: 1212 tttttggtggcgcg 1199
>ISAzs1
Length = 1508
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 129 gctgccggagacaa 142
||||||||||||||
Sbjct: 1104 gctgccggagacaa 1117
>ISStau7
Length = 1716
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 23 gatgcgccacggcc 36
||||||||||||||
Sbjct: 994 gatgcgccacggcc 1007
>ISBmu23
Length = 1210
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 16 gcatcgcgatgcgc 29
||||||||||||||
Sbjct: 338 gcatcgcgatgcgc 351
>ISRssp10
Length = 1364
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 34 gccaccttcaaacc 47
||||||||||||||
Sbjct: 1304 gccaccttcaaacc 1317
>ISArsp3
Length = 1596
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 48 atcggcggtgtggg 61
||||||||||||||
Sbjct: 1000 atcggcggtgtggg 987
>ISMex40
Length = 918
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 1 agcaccggcaccgc 14
||||||||||||||
Sbjct: 607 agcaccggcaccgc 594
>ISMdi20
Length = 1056
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 106 tcgaggcggtcggc 119
||||||||||||||
Sbjct: 820 tcgaggcggtcggc 833
>ISStma11
Length = 4621
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 204 ctcgacctgctgcc 217
||||||||||||||
Sbjct: 3851 ctcgacctgctgcc 3838
>ISAzo34
Length = 1439
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 156 cagcgcgtcgcgat 169
||||||||||||||
Sbjct: 1109 cagcgcgtcgcgat 1096
>ISRpa2
Length = 1265
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 60 ggtgtcgaccacca 73
||||||||||||||
Sbjct: 788 ggtgtcgaccacca 775
>ISSav2
Length = 1938
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 3 caccggcaccgcgg 16
||||||||||||||
Sbjct: 989 caccggcaccgcgg 1002
>ISRba2
Length = 1365
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 171 cggcgtgtcgttca 184
||||||||||||||
Sbjct: 568 cggcgtgtcgttca 581
>ISFal1
Length = 1736
Score = 28.2 bits (14), Expect = 4.6
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 195 gccgcccgactcgacctg 212
||||||||||||| ||||
Sbjct: 1022 gccgcccgactcggcctg 1039
>ISH18
Length = 1548
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 162 gtcgcgatacggcg 175
||||||||||||||
Sbjct: 1316 gtcgcgatacggcg 1303
>ISEch4
Length = 1354
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 12 cgcggcatcgcgat 25
||||||||||||||
Sbjct: 528 cgcggcatcgcgat 541
>ISGsu7
Length = 1351
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 73 acgccataggcttt 86
||||||||||||||
Sbjct: 468 acgccataggcttt 455
>ISPa42
Length = 16941
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 152 cggacagcgcgtcg 165
||||||||||||||
Sbjct: 4962 cggacagcgcgtcg 4975
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 182 tcagatcgaagctg 195
||||||||||||||
Sbjct: 5011 tcagatcgaagctg 4998
>IS50R
Length = 1534
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 96 gcggatggtctcga 109
||||||||||||||
Sbjct: 1142 gcggatggtctcga 1155
>IS4811
Length = 5396
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 60 ggtgtcgaccacca 73
||||||||||||||
Sbjct: 2460 ggtgtcgaccacca 2447
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_371_length_234_cov_0.738854_ID_5910
(234 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISAnsp4 | IS21 | Anaeromyxobacter sp. | 28 | 4.6 | |
| ISPosp2 | IS701 | Polaromonas sp. | 28 | 4.6 |
>ISAnsp4
Length = 2195
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 28 cggcgcgccgcggg 41
||||||||||||||
Sbjct: 286 cggcgcgccgcggg 273
>ISPosp2
Length = 1484
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 26 cccggcgcgccgcg 39
||||||||||||||
Sbjct: 531 cccggcgcgccgcg 544
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_372_length_234_cov_0.796178_ID_5912
(234 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISErsp1 | IS481 | Erwinia sp. | 30 | 1.2 | |
| ISSav4 | IS701 | Streptomyces avermitilis | 30 | 1.2 | |
| ISPa30 | IS66 | Pseudomonas aeruginosa | 28 | 4.6 | |
| ISPam1 | IS5 | IS903 | Paracoccus aminophilus | 28 | 4.6 |
| ISFsp13 | ISAzo13 | Frankia sp. | 28 | 4.6 | |
| ISFsp12 | ISAzo13 | Frankia sp. | 28 | 4.6 | |
| ISShwo5 | IS110 | IS1111 | Shewanella woodyi | 28 | 4.6 |
| ISMex22 | Tn3 | Methylobacterium extorquens | 28 | 4.6 | |
| ISAzo17 | IS21 | Azoarcus sp. | 28 | 4.6 | |
| ISApr7 | IS1595 | ISNwi1 | Alpha proteobacterium | 28 | 4.6 |
| ISGur6 | IS3 | IS3 | Geobacter uraniireducens | 28 | 4.6 |
| ISSod9 | Tn3 | Shewanella oneidensis | 28 | 4.6 | |
| ISVei1 | IS3 | IS3 | Verminephrobacter eiseniae | 28 | 4.6 |
| ISMyma2 | IS1380 | Mycobacterium marinum | 28 | 4.6 | |
| ISNGR8 | IS256 | - | Rhizobium sp | 28 | 4.6 |
>ISErsp1
Length = 1201
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 35 cctcacgagccactt 49
|||||||||||||||
Sbjct: 502 cctcacgagccactt 488
>ISSav4
Length = 1426
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 161 ccagcgccgccaccg 175
|||||||||||||||
Sbjct: 836 ccagcgccgccaccg 822
>ISPa30
Length = 2436
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 194 gcaggtgcagttca 207
||||||||||||||
Sbjct: 323 gcaggtgcagttca 310
>ISPam1
Length = 1050
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 55 gtcagcgggttaga 68
||||||||||||||
Sbjct: 45 gtcagcgggttaga 58
>ISFsp13
Length = 1724
Score = 28.2 bits (14), Expect = 4.6
Identities = 20/22 (90%)
Strand = Plus / Minus
Query: 153 cagcgtcaccagcgccgccacc 174
||||| || |||||||||||||
Sbjct: 351 cagcgccagcagcgccgccacc 330
>ISFsp12
Length = 1730
Score = 28.2 bits (14), Expect = 4.6
Identities = 20/22 (90%)
Strand = Plus / Minus
Query: 153 cagcgtcaccagcgccgccacc 174
||||| || |||||||||||||
Sbjct: 351 cagcgccatcagcgccgccacc 330
>ISShwo5
Length = 1611
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 84 catcaccgatttca 97
||||||||||||||
Sbjct: 811 catcaccgatttca 798
>ISMex22
Length = 3864
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 28 gccccggcctcacg 41
||||||||||||||
Sbjct: 2750 gccccggcctcacg 2763
>ISAzo17
Length = 2095
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 146 agccgatcagcgtc 159
||||||||||||||
Sbjct: 581 agccgatcagcgtc 568
>ISApr7
Length = 3923
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 143 cgaagccgatcagc 156
||||||||||||||
Sbjct: 2082 cgaagccgatcagc 2069
>ISGur6
Length = 1667
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 178 gaaacggagcgggt 191
||||||||||||||
Sbjct: 768 gaaacggagcgggt 781
>ISSod9
Length = 4412
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 217 cgcatctgcaggta 230
||||||||||||||
Sbjct: 2711 cgcatctgcaggta 2698
>ISVei1
Length = 1214
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 183 ggagcgggtgcgca 196
||||||||||||||
Sbjct: 530 ggagcgggtgcgca 543
>ISMyma2
Length = 1679
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 20 ccacccacgccccg 33
||||||||||||||
Sbjct: 996 ccacccacgccccg 983
>ISNGR8
Length = 1298
Score = 28.2 bits (14), Expect = 4.6
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 107 cgtcgatgccgtag 120
||||||||||||||
Sbjct: 449 cgtcgatgccgtag 436
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_373_length_233_cov_0.929487_ID_5914
(233 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISSdi1 | IS1182 | Streptomyces diastaticus | 30 | 1.2 | |
| ISMno9 | IS1182 | Methylobacterium nodulans | 30 | 1.2 | |
| ISMno30 | ISL3 | Methylobacterium nodulans | 30 | 1.2 | |
| ISPa7 | IS1182 | Pseudomonas aeruginosa | 30 | 1.2 | |
| ISMdi7 | IS21 | Methylobacterium dichloromethanicum | 30 | 1.2 | |
| ISMex8 | IS21 | Methylobacterium extorquens | 30 | 1.2 | |
| ISThsp11 | IS3 | IS3 | Thiomonas sp. | 30 | 1.2 |
| ISThsp9 | Tn3 | Thiomonas sp. | 30 | 1.2 | |
| ISThsp8 | IS1634 | Thiomonas sp. | 30 | 1.2 | |
| ISOan3 | IS256 | Octadecabacter antarcticus | 30 | 1.2 | |
| ISBcen3 | IS110 | IS1111 | Burkholderia cenocepacia | 30 | 1.2 |
| ISMex45 | IS200/IS605 | IS1341 | Methylobacterium extorquens | 28 | 4.5 |
| ISMex44 | IS200/IS605 | IS1341 | Methylobacterium extorquens | 28 | 4.5 |
| ISNamo20 | IS200/IS605 | IS1341 | Natronomonas moolapensis | 28 | 4.5 |
| ISPsy30 | Tn3 | Pseudomonas syringae | 28 | 4.5 | |
| ISAzs17 | Tn3 | Azospirillum sp. | 28 | 4.5 | |
| ISNph11 | IS200/IS605 | IS1341 | Natronomonas pharaonis | 28 | 4.5 |
| ISRhsp8 | IS5 | IS903 | Rhodobacter sphaeroides | 28 | 4.5 |
| ISLpn13 | IS1182 | Legionella pneumophila | 28 | 4.5 | |
| ISPmar3 | IS5 | IS5 | Paracoccus marcusii | 28 | 4.5 |
| ISVsp9 | IS1182 | Verrucomicrobium spinosum | 28 | 4.5 | |
| ISPlc1 | IS5 | IS903 | Paracoccus alcaliphilus | 28 | 4.5 |
| ISButh5 | IS5 | Burkholderia thailandensis | 28 | 4.5 | |
| ISRosp6 | IS5 | Roseobacter sp. | 28 | 4.5 | |
| ISRsp5 | IS5 | Rhizobium sp. | 28 | 4.5 | |
| ISMtsp5 | IS3 | IS2 | Methylobacterium sp. | 28 | 4.5 |
| ISCef7 | IS1380 | Corynebacterium efficiens | 28 | 4.5 | |
| ISAzo29 | ISAs1 | Azoarcus sp. | 28 | 4.5 | |
| ISCARN68 | IS256 | Metagenomic data from CARNOULES | 28 | 4.5 | |
| ISSav7 | IS481 | Streptomyces avermitilis | 28 | 4.5 | |
| ISAli18 | ISL3 | Azospirillum lipoferum | 28 | 4.5 | |
| ISAli11 | ISL3 | Azospirillum lipoferum | 28 | 4.5 | |
| ISCausp2 | IS1595 | ISNha5 | Caulobacter sp. | 28 | 4.5 |
| ISPst7 | IS5 | IS5 | Pseudomonas stutzeri | 28 | 4.5 |
| ISXca1 | IS3 | IS407 | Xanthomonas campestris | 28 | 4.5 |
| ISBcen21 | IS3 | IS51 | Burkholderia cenocepacia | 28 | 4.5 |
| IS1539 | IS607 | Mycobacterium tuberculosis | 28 | 4.5 |
>ISSdi1
Length = 1789
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 29 gcggcctggcggtcg 43
|||||||||||||||
Sbjct: 335 gcggcctggcggtcg 321
>ISMno9
Length = 1548
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 46 catgatcgcgcgcgc 60
|||||||||||||||
Sbjct: 841 catgatcgcgcgcgc 855
>ISMno30
Length = 1773
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 181 catcaggcgcagcag 195
|||||||||||||||
Sbjct: 484 catcaggcgcagcag 470
>ISPa7
Length = 1669
Score = 30.2 bits (15), Expect = 1.2
Identities = 21/23 (91%)
Strand = Plus / Plus
Query: 10 tttggtggattcaaaatcggcgg 32
|||| ||||||||||||| ||||
Sbjct: 39 tttgatggattcaaaatcagcgg 61
>ISMdi7
Length = 2568
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 180 ccatcaggcgcagca 194
|||||||||||||||
Sbjct: 1392 ccatcaggcgcagca 1378
>ISMex8
Length = 2597
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 180 ccatcaggcgcagca 194
|||||||||||||||
Sbjct: 1393 ccatcaggcgcagca 1379
>ISThsp11
Length = 1814
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 54 cgcgcgccagctcgg 68
|||||||||||||||
Sbjct: 590 cgcgcgccagctcgg 576
>ISThsp9
Length = 6215
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 137 ggaaagccggaggtg 151
|||||||||||||||
Sbjct: 6167 ggaaagccggaggtg 6153
>ISThsp8
Length = 1929
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 177 gcaccatcaggcgca 191
|||||||||||||||
Sbjct: 519 gcaccatcaggcgca 505
>ISOan3
Length = 1437
Score = 30.2 bits (15), Expect = 1.2
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 114 gcccgtcgatcttgatcgc 132
|||||||||||| ||||||
Sbjct: 663 gcccgtcgatctggatcgc 645
>ISBcen3
Length = 1413
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 180 ccatcaggcgcagca 194
|||||||||||||||
Sbjct: 640 ccatcaggcgcagca 626
>ISMex45
Length = 1270
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 189 gcagcaggtcctgc 202
||||||||||||||
Sbjct: 339 gcagcaggtcctgc 352
>ISMex44
Length = 1270
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 189 gcagcaggtcctgc 202
||||||||||||||
Sbjct: 339 gcagcaggtcctgc 352
>ISNamo20
Length = 1536
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 155 aacaggtcagagcc 168
||||||||||||||
Sbjct: 677 aacaggtcagagcc 690
>ISPsy30
Length = 5167
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 27 cggcggcctggcgg 40
||||||||||||||
Sbjct: 5035 cggcggcctggcgg 5048
>ISAzs17
Length = 7252
Score = 28.2 bits (14), Expect = 4.5
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 129 tcgccggcggaaagccgg 146
||||||||||| ||||||
Sbjct: 2035 tcgccggcggagagccgg 2018
>ISNph11
Length = 1359
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 4 gcattctttggtgg 17
||||||||||||||
Sbjct: 1100 gcattctttggtgg 1087
>ISRhsp8
Length = 1054
Score = 28.2 bits (14), Expect = 4.5
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 26 tcggcggcctggcggtcg 43
||||| ||||||||||||
Sbjct: 926 tcggctgcctggcggtcg 909
>ISLpn13
Length = 1674
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 199 ctgcatgaatttga 212
||||||||||||||
Sbjct: 65 ctgcatgaatttga 52
>ISPmar3
Length = 1282
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 26 tcggcggcctggcg 39
||||||||||||||
Sbjct: 1208 tcggcggcctggcg 1195
>ISVsp9
Length = 1730
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 143 ccggaggtgatgaa 156
||||||||||||||
Sbjct: 1269 ccggaggtgatgaa 1282
>ISPlc1
Length = 1050
Score = 28.2 bits (14), Expect = 4.5
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 26 tcggcggcctggcggtcg 43
|||||| |||||||||||
Sbjct: 923 tcggcgacctggcggtcg 906
>ISButh5
Length = 1350
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 111 tgcgcccgtcgatc 124
||||||||||||||
Sbjct: 981 tgcgcccgtcgatc 968
>ISRosp6
Length = 1357
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 111 tgcgcccgtcgatc 124
||||||||||||||
Sbjct: 1049 tgcgcccgtcgatc 1036
>ISRsp5
Length = 1320
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 30 cggcctggcggtcg 43
||||||||||||||
Sbjct: 754 cggcctggcggtcg 767
>ISMtsp5
Length = 1347
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 181 catcaggcgcagca 194
||||||||||||||
Sbjct: 707 catcaggcgcagca 694
>ISCef7
Length = 1687
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 186 ggcgcagcaggtcc 199
||||||||||||||
Sbjct: 361 ggcgcagcaggtcc 348
>ISAzo29
Length = 1304
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 49 gatcgcgcgcgcca 62
||||||||||||||
Sbjct: 670 gatcgcgcgcgcca 683
>ISCARN68
Length = 1419
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 182 atcaggcgcagcag 195
||||||||||||||
Sbjct: 1199 atcaggcgcagcag 1186
>ISSav7
Length = 2992
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 187 gcgcagcaggtcct 200
||||||||||||||
Sbjct: 1386 gcgcagcaggtcct 1373
>ISAli18
Length = 1752
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 182 atcaggcgcagcag 195
||||||||||||||
Sbjct: 515 atcaggcgcagcag 502
>ISAli11
Length = 1739
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 182 atcaggcgcagcag 195
||||||||||||||
Sbjct: 503 atcaggcgcagcag 490
>ISCausp2
Length = 7915
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 133 cggcggaaagccgg 146
||||||||||||||
Sbjct: 5928 cggcggaaagccgg 5941
>ISPst7
Length = 1192
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 19 ttcaaaatcggcgg 32
||||||||||||||
Sbjct: 1136 ttcaaaatcggcgg 1149
>ISXca1
Length = 1225
Score = 28.2 bits (14), Expect = 4.5
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 186 ggcgcagcaggtcctgca 203
||||||||||||| ||||
Sbjct: 543 ggcgcagcaggtcgtgca 526
>ISBcen21
Length = 1231
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 127 gatcgccggcggaa 140
||||||||||||||
Sbjct: 1158 gatcgccggcggaa 1145
>IS1539
Length = 2092
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 65 tcggtggtgtgttg 78
||||||||||||||
Sbjct: 38 tcggtggtgtgttg 51
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_374_length_233_cov_0.935897_ID_5916
(233 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISSav7 | IS481 | Streptomyces avermitilis | 36 | 0.019 | |
| ISHth2 | ISH6 | Halococcus thailandensis | 34 | 0.074 | |
| ISCARN97 | IS110 | Metagenomic data from CARNOULES | 32 | 0.29 | |
| ISAzca2 | IS66 | Azorhizobium caulinodans | 32 | 0.29 | |
| ISLfe1 | ISKra4 | ISKra4 | Leptospirillum ferrodiazotrophum | 30 | 1.2 |
| ISMaq4 | IS1380 | Marinobacter aquaeolei | 30 | 1.2 | |
| ISNmo3 | IS481 | Nitrococcus mobilis | 30 | 1.2 | |
| ISAma1 | IS3 | IS3 | Alteromonas macleodii | 30 | 1.2 |
| IS1405 | IS5 | IS5 | Ralstonia solanacearum | 30 | 1.2 |
| ISNamo21 | IS200/IS605 | IS1341 | Natronomonas moolapensis | 28 | 4.5 |
| ISMva4 | IS256 | Mycobacterium vanbaalenii | 28 | 4.5 | |
| ISAcfe2 | IS1182 | Acidimicrobium ferrooxidans | 28 | 4.5 | |
| ISBj2_B | IS5 | IS5 | Bradyrhizobium japonicum | 28 | 4.5 |
| ISNoc2 | IS5 | IS5 | Nitrosococcus oceani | 28 | 4.5 |
| ISStsp1 | ISAzo13 | Streptomyces sp. | 28 | 4.5 | |
| ISThsp14 | ISL3 | Thiomonas sp. | 28 | 4.5 | |
| ISCARN101 | IS3 | IS3 | Metagenomic data from CARNOULES | 28 | 4.5 |
| ISBj5_B | IS5 | IS5 | Bradyrhizobium japonicum | 28 | 4.5 |
| ISPa11 | IS110 | IS1111 | Pseudomonas aeruginosa | 28 | 4.5 |
| IS469 | ISL3 | - | Streptomyces coelicolor | 28 | 4.5 |
>ISSav7
Length = 2992
Score = 36.2 bits (18), Expect = 0.019
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 184 tgtcgccgaagaggcggt 201
||||||||||||||||||
Sbjct: 757 tgtcgccgaagaggcggt 774
>ISHth2
Length = 1442
Score = 34.2 bits (17), Expect = 0.074
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 186 tcgccgaagaggcggtg 202
|||||||||||||||||
Sbjct: 1161 tcgccgaagaggcggtg 1177
>ISCARN97
Length = 1555
Score = 32.2 bits (16), Expect = 0.29
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 141 ccatgcccggtgttga 156
||||||||||||||||
Sbjct: 1032 ccatgcccggtgttga 1047
>ISAzca2
Length = 2458
Score = 32.2 bits (16), Expect = 0.29
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 124 gcgacagtccgtggcg 139
||||||||||||||||
Sbjct: 257 gcgacagtccgtggcg 242
>ISLfe1
Length = 1800
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 183 gtgtcgccgaagagg 197
|||||||||||||||
Sbjct: 1363 gtgtcgccgaagagg 1349
>ISMaq4
Length = 1559
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 10 cacccgtatgcgccg 24
|||||||||||||||
Sbjct: 1329 cacccgtatgcgccg 1315
>ISNmo3
Length = 1061
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 97 ggtgtttgtgctgcc 111
|||||||||||||||
Sbjct: 1016 ggtgtttgtgctgcc 1002
>ISAma1
Length = 1261
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 51 gcctgatgtgcgaga 65
|||||||||||||||
Sbjct: 398 gcctgatgtgcgaga 412
>IS1405
Length = 1174
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 19 gcgccgcatgcgccg 33
|||||||||||||||
Sbjct: 178 gcgccgcatgcgccg 192
>ISNamo21
Length = 1836
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 187 cgccgaagaggcgg 200
||||||||||||||
Sbjct: 1605 cgccgaagaggcgg 1592
>ISMva4
Length = 1458
Score = 28.2 bits (14), Expect = 4.5
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 83 gacctgatctacccggtg 100
|||| |||||||||||||
Sbjct: 594 gacccgatctacccggtg 611
>ISAcfe2
Length = 1771
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 198 cggtgtccttgggg 211
||||||||||||||
Sbjct: 1256 cggtgtccttgggg 1243
>ISBj2_B
Length = 1509
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 216 ccgcgctggcgctg 229
||||||||||||||
Sbjct: 936 ccgcgctggcgctg 923
>ISNoc2
Length = 1472
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 20 cgccgcatgcgccg 33
||||||||||||||
Sbjct: 745 cgccgcatgcgccg 758
>ISStsp1
Length = 1694
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 54 tgatgtgcgagaac 67
||||||||||||||
Sbjct: 1048 tgatgtgcgagaac 1035
>ISThsp14
Length = 1302
Score = 28.2 bits (14), Expect = 4.5
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 149 ggtgttgagcgtgtgtcg 166
||||||||||| ||||||
Sbjct: 1179 ggtgttgagcgggtgtcg 1162
>ISCARN101
Length = 1672
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 83 gacctgatctaccc 96
||||||||||||||
Sbjct: 1576 gacctgatctaccc 1563
>ISBj5_B
Length = 1524
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 216 ccgcgctggcgctg 229
||||||||||||||
Sbjct: 951 ccgcgctggcgctg 938
>ISPa11
Length = 1372
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 216 ccgcgctggcgctg 229
||||||||||||||
Sbjct: 765 ccgcgctggcgctg 752
>IS469
Length = 1647
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 196 ggcggtgtccttgg 209
||||||||||||||
Sbjct: 1274 ggcggtgtccttgg 1261
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_375_length_233_cov_0.935897_ID_5918
(233 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISMsi1 | IS21 | Methylocella silvestris | 32 | 0.29 | |
| ISApr2 | IS1595 | ISSod11 | Alpha proteobacterium | 32 | 0.29 |
| ISBli5 | IS1380 | Brevibacterium linens | 30 | 1.2 | |
| ISFsp4 | IS200/IS605 | Frankia sp. | 30 | 1.2 | |
| ISBlo3 | IS3 | Bifidobacterium longum | 30 | 1.2 | |
| ISPpu5 | IS110 | IS1111 | Pseudomonas putida | 30 | 1.2 |
| ISAeca3 | IS110 | IS1111 | Aeromonas caviae | 28 | 4.5 |
| ISMno24 | IS91 | Methylobacterium nodulans | 28 | 4.5 | |
| ISNspu1 | ISLre2 | Nodularia spumigena | 28 | 4.5 | |
| ISBugl3 | ISKra4 | ISAzba1 | Burkholderia glumae | 28 | 4.5 |
| ISGxy1 | IS3 | IS150 | Gluconacetobacter xylinus | 28 | 4.5 |
| ISMno23 | IS91 | Methylobacterium nodulans | 28 | 4.5 | |
| ISMno26 | IS110 | IS1111 | Methylobacterium nodulans | 28 | 4.5 |
| ISMch1 | IS3 | IS150 | Methylobacterium chloromethanicum | 28 | 4.5 |
| ISRsp8 | ISL3 | Rhizhobium sp. | 28 | 4.5 | |
| ISMex38 | Tn3 | Methylobacterium extorquens | 28 | 4.5 | |
| ISKrh1 | IS481 | Kocuria rhizophila | 28 | 4.5 | |
| ISDds7 | IS4 | IS10 | Deinococcus deserti | 28 | 4.5 |
| ISDds2 | IS4 | IS10 | Deinococcus deserti | 28 | 4.5 |
| ISMtsp2 | IS6 | Methylobacterium sp. | 28 | 4.5 | |
| ISRle5 | IS3 | IS407 | Rhizobium leguminosarum | 28 | 4.5 |
| ISGpr2 | IS3 | IS51 | Gamma proteobacterium | 28 | 4.5 |
| ISRhosp2 | IS701 | Rhodococcus sp. | 28 | 4.5 | |
| ISArch6 | IS5 | IS5 | Uncultured archaeon | 28 | 4.5 |
| ISPst9 | ISL3 | Pseudomonas stutzeri | 28 | 4.5 | |
| ISPpu12 | ISL3 | Pseudomonas putida | 28 | 4.5 | |
| ISPst2 | ISL3 | - | Pseudomonas stutzeri | 28 | 4.5 |
| IS1396 | ISL3 | - | Serratia marcescens | 28 | 4.5 |
>ISMsi1
Length = 2307
Score = 32.2 bits (16), Expect = 0.29
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 139 gatgatcgagcgccgctcgc 158
|||| |||||||||||||||
Sbjct: 361 gatggtcgagcgccgctcgc 342
>ISApr2
Length = 1029
Score = 32.2 bits (16), Expect = 0.29
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 27 cggccgtcaccgagttctgc 46
|||||||||||||| |||||
Sbjct: 301 cggccgtcaccgaggtctgc 282
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 215 cggcaggcgatcga 228
||||||||||||||
Sbjct: 533 cggcaggcgatcga 520
>ISBli5
Length = 1687
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 7 cagggaccggtcgac 21
|||||||||||||||
Sbjct: 457 cagggaccggtcgac 443
>ISFsp4
Length = 1784
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 204 ggccgacctgccggc 218
|||||||||||||||
Sbjct: 809 ggccgacctgccggc 795
>ISBlo3
Length = 1480
Score = 30.2 bits (15), Expect = 1.2
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 25 cacggccgtcaccgagttc 43
||||| |||||||||||||
Sbjct: 966 cacggacgtcaccgagttc 984
>ISPpu5
Length = 1342
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 196 ggtgatcgggccgac 210
|||||||||||||||
Sbjct: 725 ggtgatcgggccgac 711
>ISAeca3
Length = 1340
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 197 gtgatcgggccgac 210
||||||||||||||
Sbjct: 735 gtgatcgggccgac 722
>ISMno24
Length = 2157
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 213 gccggcaggcgatc 226
||||||||||||||
Sbjct: 695 gccggcaggcgatc 708
>ISNspu1
Length = 1933
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 84 agaccagcgtgttg 97
||||||||||||||
Sbjct: 870 agaccagcgtgttg 883
>ISBugl3
Length = 1576
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 145 cgagcgccgctcgc 158
||||||||||||||
Sbjct: 1144 cgagcgccgctcgc 1131
>ISGxy1
Length = 1313
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 215 cggcaggcgatcga 228
||||||||||||||
Sbjct: 205 cggcaggcgatcga 218
>ISMno23
Length = 2271
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 213 gccggcaggcgatc 226
||||||||||||||
Sbjct: 1544 gccggcaggcgatc 1531
>ISMno26
Length = 1353
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 196 ggtgatcgggccga 209
||||||||||||||
Sbjct: 750 ggtgatcgggccga 737
>ISMch1
Length = 1294
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 215 cggcaggcgatcga 228
||||||||||||||
Sbjct: 199 cggcaggcgatcga 212
>ISRsp8
Length = 1695
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 144 tcgagcgccgctcg 157
||||||||||||||
Sbjct: 590 tcgagcgccgctcg 603
>ISMex38
Length = 3841
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 203 gggccgacctgccg 216
||||||||||||||
Sbjct: 1169 gggccgacctgccg 1182
>ISKrh1
Length = 2854
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 115 gcgcaccacatgca 128
||||||||||||||
Sbjct: 2512 gcgcaccacatgca 2499
>ISDds7
Length = 1123
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 135 tgaagatgatcgag 148
||||||||||||||
Sbjct: 1050 tgaagatgatcgag 1037
>ISDds2
Length = 1069
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 135 tgaagatgatcgag 148
||||||||||||||
Sbjct: 992 tgaagatgatcgag 979
>ISMtsp2
Length = 894
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 216 ggcaggcgatcgac 229
||||||||||||||
Sbjct: 419 ggcaggcgatcgac 432
>ISRle5
Length = 1196
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 206 ccgacctgccggca 219
||||||||||||||
Sbjct: 843 ccgacctgccggca 830
>ISGpr2
Length = 1229
Score = 28.2 bits (14), Expect = 4.5
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 155 tcgctgaaagcgtcttcc 172
||||||||||| ||||||
Sbjct: 1015 tcgctgaaagcttcttcc 1032
>ISRhosp2
Length = 1361
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 205 gccgacctgccggc 218
||||||||||||||
Sbjct: 785 gccgacctgccggc 798
>ISArch6
Length = 1260
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 76 ggtcagatagacca 89
||||||||||||||
Sbjct: 383 ggtcagatagacca 370
>ISPst9
Length = 2472
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 113 atgcgcaccacatg 126
||||||||||||||
Sbjct: 1825 atgcgcaccacatg 1812
>ISPpu12
Length = 3372
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 113 atgcgcaccacatg 126
||||||||||||||
Sbjct: 2725 atgcgcaccacatg 2712
>ISPst2
Length = 2984
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 113 atgcgcaccacatg 126
||||||||||||||
Sbjct: 2337 atgcgcaccacatg 2324
>IS1396
Length = 1771
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 113 atgcgcaccacatg 126
||||||||||||||
Sbjct: 678 atgcgcaccacatg 665
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_376_length_233_cov_0.935897_ID_5920
(233 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISHwa3 | IS5 | ISH1 | Haloquadratum walsbyi | 40 | 0.001 |
| ISVsp7 | ISAs1 | Verrucomicrobium spinosum | 34 | 0.074 | |
| ISThsp7 | IS1634 | Thiomonas sp. | 34 | 0.074 | |
| ISAav2 | IS5 | IS903 | Acidovorax avenae | 34 | 0.074 |
| ISAzs21 | IS66 | Azospirillum sp. | 32 | 0.29 | |
| IS693 | IS66 | Rhizobium sp. | 32 | 0.29 | |
| ISGNB1-1 | IS5 | IS903 | Uncultured bacterium | 32 | 0.29 |
| ISSpo3 | IS1595 | ISNwi1 | Silicibacter pomeroyi | 32 | 0.29 |
| ISHma8 | IS5 | ISH1 | Haloarcula marismortui | 32 | 0.29 |
| ISHam1 | IS630 | Haloarcula amylolytica | 30 | 1.2 | |
| ISNpe15 | IS5 | Natrinema pellirubrum | 30 | 1.2 | |
| ISHoc2 | ISKra4 | ISKra4 | Haliangium ochraceum | 30 | 1.2 |
| ISHla6 | IS5 | Halorubrum lacusprofundi | 30 | 1.2 | |
| ISPa43 | Tn3 | Pseudomonas aeruginosa | 30 | 1.2 | |
| ISHwa7 | IS630 | Haloquadratum walsbyi | 30 | 1.2 | |
| ISAnsp9 | ISAs1 | Anaeromyxobacter sp. | 30 | 1.2 | |
| ISAtu4 | IS3 | IS51 | Agrobacterium tumefaciens | 30 | 1.2 |
| ISBj1 | IS1380 | - | Bradyrhizobium japonicum | 30 | 1.2 |
| IS1113 | IS256 | - | Xanthomonas oryzae | 30 | 1.2 |
| TnAs3 | Tn3 | Aeromonas salmonicida | 28 | 4.5 | |
| TnAs2 | Tn3 | Aeromonas salmonicida | 28 | 4.5 | |
| TnShfr1 | Tn3 | Shewanella frigidimarina | 28 | 4.5 | |
| ISKra2 | ISKra4 | ISKra4 | Ktedonobacter racemifer | 28 | 4.5 |
| ISPa38 | Tn3 | Pseudomonas aeruginosa | 28 | 4.5 | |
| ISMgi3 | IS1182 | Mycobacterium gilvum | 28 | 4.5 | |
| ISVsp13 | IS3 | IS150 | Verrucomicrobium spinosum | 28 | 4.5 |
| ISDth2 | ISNCY | ISDol1 | Desulfonatronospira thiodismutans | 28 | 4.5 |
| ISMtsp4 | IS30 | Methylobacterium sp. | 28 | 4.5 | |
| ISArsp6 | Tn3 | Arthrobacter sp. | 28 | 4.5 | |
| ISAtu7 | IS110 | Agrobacterium tumefaciens | 28 | 4.5 | |
| ISMdi9 | IS110 | IS1111 | Methylobacterium dichloromethanicum | 28 | 4.5 |
| ISAzo29 | ISAs1 | Azoarcus sp. | 28 | 4.5 | |
| ISCARN56 | IS607 | Metagenomic data from CARNOULES | 28 | 4.5 | |
| ISCARN5 | IS110 | IS1111 | Metagenomic data from CARNOULES | 28 | 4.5 |
| ISNisp6 | IS66 | Nitrobacter sp. | 28 | 4.5 | |
| ISAeca1 | IS30 | Aeromonas caviae | 28 | 4.5 | |
| ISAtu3 | IS3 | IS150 | Agrobacterium tumefaciens | 28 | 4.5 |
| ISRba3 | IS4 | IS4 | Rhodopirellula baltica | 28 | 4.5 |
| ISPpa4 | IS5 | IS903 | Paracoccus pantotrophus | 28 | 4.5 |
| ISRso9 | IS5 | IS5 | Ralstonia solanacearum | 28 | 4.5 |
| ISPa42 | Tn3 | Pseudomonas aeruginosa | 28 | 4.5 | |
| ISMav1 | IS21 | - | Mycobacterium avium | 28 | 4.5 |
| ISBm3 | IS481 | - | Brucella melitensis | 28 | 4.5 |
| IS1612 | IS21 | - | Mycobacterium avium | 28 | 4.5 |
>ISHwa3
Length = 940
Score = 40.1 bits (20), Expect = 0.001
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 62 ggagatcggccgcttcaagg 81
||||||||||||||||||||
Sbjct: 309 ggagatcggccgcttcaagg 290
>ISVsp7
Length = 1237
Score = 34.2 bits (17), Expect = 0.074
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 118 ccaccatggacccggcc 134
|||||||||||||||||
Sbjct: 1179 ccaccatggacccggcc 1195
>ISThsp7
Length = 1920
Score = 34.2 bits (17), Expect = 0.074
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 59 gctggagatcggccgct 75
|||||||||||||||||
Sbjct: 1018 gctggagatcggccgct 1034
>ISAav2
Length = 1031
Score = 34.2 bits (17), Expect = 0.074
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 73 gcttcaagggcctgggcgaga 93
|||||||| ||||||||||||
Sbjct: 848 gcttcaagcgcctgggcgaga 868
>ISAzs21
Length = 2598
Score = 32.2 bits (16), Expect = 0.29
Identities = 28/32 (87%)
Strand = Plus / Plus
Query: 38 ggagggcttcaagcccgaggcgctggagatcg 69
||||||| ||||| | |||||||||||||||
Sbjct: 1067 ggagggcatcaagagcaaggcgctggagatcg 1098
>IS693
Length = 3078
Score = 32.2 bits (16), Expect = 0.29
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 54 gaggcgctggagatcg 69
||||||||||||||||
Sbjct: 1963 gaggcgctggagatcg 1978
>ISGNB1-1
Length = 1047
Score = 32.2 bits (16), Expect = 0.29
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 73 gcttcaagggcctgggcgag 92
|||||||| |||||||||||
Sbjct: 855 gcttcaagcgcctgggcgag 874
>ISSpo3
Length = 1947
Score = 32.2 bits (16), Expect = 0.29
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 48 aagcccgaggcgctgg 63
||||||||||||||||
Sbjct: 1002 aagcccgaggcgctgg 987
>ISHma8
Length = 937
Score = 32.2 bits (16), Expect = 0.29
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 62 ggagatcggccgcttcaagg 81
||||||||||||| ||||||
Sbjct: 281 ggagatcggccgcgtcaagg 300
>ISHam1
Length = 1139
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 167 cgacgcgctcgacga 181
|||||||||||||||
Sbjct: 523 cgacgcgctcgacga 537
>ISNpe15
Length = 1069
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 153 gggcacgttcgcgcc 167
|||||||||||||||
Sbjct: 917 gggcacgttcgcgcc 931
>ISHoc2
Length = 1715
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 83 cctgggcgagatgaa 97
|||||||||||||||
Sbjct: 1580 cctgggcgagatgaa 1566
>ISHla6
Length = 1069
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 153 gggcacgttcgcgcc 167
|||||||||||||||
Sbjct: 917 gggcacgttcgcgcc 931
>ISPa43
Length = 19903
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 2 cggcgagctgaccgc 16
|||||||||||||||
Sbjct: 11437 cggcgagctgaccgc 11451
>ISHwa7
Length = 1142
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 167 cgacgcgctcgacga 181
|||||||||||||||
Sbjct: 526 cgacgcgctcgacga 540
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 164 cgccgacgcgctcg 177
||||||||||||||
Sbjct: 527 cgccgacgcgctcg 514
>ISAnsp9
Length = 1704
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 128 cccggccacccggcg 142
|||||||||||||||
Sbjct: 265 cccggccacccggcg 251
>ISAtu4
Length = 1241
Score = 30.2 bits (15), Expect = 1.2
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 91 agatgaaccccgagcagct 109
||||||| |||||||||||
Sbjct: 239 agatgaagcccgagcagct 257
>ISBj1
Length = 2071
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 140 gcgcgtcttgccggg 154
|||||||||||||||
Sbjct: 1070 gcgcgtcttgccggg 1056
>IS1113
Length = 1306
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 153 gggcacgttcgcgcc 167
|||||||||||||||
Sbjct: 316 gggcacgttcgcgcc 330
>TnAs3
Length = 18735
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 168 gacgcgctcgacga 181
||||||||||||||
Sbjct: 8451 gacgcgctcgacga 8438
>TnAs2
Length = 8650
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 164 cgccgacgcgctcg 177
||||||||||||||
Sbjct: 1865 cgccgacgcgctcg 1878
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 17 aatccgcgaccgca 30
||||||||||||||
Sbjct: 8347 aatccgcgaccgca 8360
>TnShfr1
Length = 5131
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 17 aatccgcgaccgca 30
||||||||||||||
Sbjct: 4828 aatccgcgaccgca 4841
>ISKra2
Length = 1665
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 94 tgaaccccgagcag 107
||||||||||||||
Sbjct: 572 tgaaccccgagcag 559
>ISPa38
Length = 6455
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 17 aatccgcgaccgca 30
||||||||||||||
Sbjct: 6152 aatccgcgaccgca 6165
>ISMgi3
Length = 1770
Score = 28.2 bits (14), Expect = 4.5
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 136 cccggcgcgtcttgccgg 153
|||| |||||||||||||
Sbjct: 496 cccgccgcgtcttgccgg 479
>ISVsp13
Length = 1503
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 54 gaggcgctggagat 67
||||||||||||||
Sbjct: 884 gaggcgctggagat 897
>ISDth2
Length = 1658
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 38 ggagggcttcaagc 51
||||||||||||||
Sbjct: 1414 ggagggcttcaagc 1427
>ISMtsp4
Length = 1455
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 99 cccgagcagctgcg 112
||||||||||||||
Sbjct: 1122 cccgagcagctgcg 1135
>ISArsp6
Length = 26712
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 76 tcaagggcctgggc 89
||||||||||||||
Sbjct: 16077 tcaagggcctgggc 16090
>ISAtu7
Length = 1472
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 171 gcgctcgacgacac 184
||||||||||||||
Sbjct: 851 gcgctcgacgacac 864
>ISMdi9
Length = 1399
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 49 agcccgaggcgctg 62
||||||||||||||
Sbjct: 219 agcccgaggcgctg 232
>ISAzo29
Length = 1304
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 169 acgcgctcgacgac 182
||||||||||||||
Sbjct: 927 acgcgctcgacgac 914
>ISCARN56
Length = 1894
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 160 ttcgcgccgacgcg 173
||||||||||||||
Sbjct: 1427 ttcgcgccgacgcg 1440
>ISCARN5
Length = 1367
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 200 cctgttgatgggca 213
||||||||||||||
Sbjct: 1297 cctgttgatgggca 1284
>ISNisp6
Length = 2489
Score = 28.2 bits (14), Expect = 4.5
Identities = 20/22 (90%)
Strand = Plus / Plus
Query: 93 atgaaccccgagcagctgcgcg 114
|||| ||||| |||||||||||
Sbjct: 1334 atgatccccgcgcagctgcgcg 1355
>ISAeca1
Length = 1091
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 92 gatgaaccccgagc 105
||||||||||||||
Sbjct: 208 gatgaaccccgagc 195
>ISAtu3
Length = 1597
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 38 ggagggcttcaagc 51
||||||||||||||
Sbjct: 603 ggagggcttcaagc 590
>ISRba3
Length = 1667
Score = 28.2 bits (14), Expect = 4.5
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 157 acgttcgcgccgacgcgc 174
||||||||||| ||||||
Sbjct: 987 acgttcgcgccaacgcgc 970
>ISPpa4
Length = 1053
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 123 atggacccggccac 136
||||||||||||||
Sbjct: 523 atggacccggccac 536
>ISRso9
Length = 1483
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 52 ccgaggcgctggag 65
||||||||||||||
Sbjct: 1075 ccgaggcgctggag 1088
>ISPa42
Length = 16941
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 52 ccgaggcgctggag 65
||||||||||||||
Sbjct: 3215 ccgaggcgctggag 3228
>ISMav1
Length = 2536
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 172 cgctcgacgacacc 185
||||||||||||||
Sbjct: 2230 cgctcgacgacacc 2243
>ISBm3
Length = 1022
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 165 gccgacgcgctcga 178
||||||||||||||
Sbjct: 533 gccgacgcgctcga 520
>IS1612
Length = 2532
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 172 cgctcgacgacacc 185
||||||||||||||
Sbjct: 2226 cgctcgacgacacc 2239
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_377_length_233_cov_0.929487_ID_5922
(233 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISBrsp4 | IS481 | Bradyrhizobium sp. | 32 | 0.29 | |
| IS987 | IS3 | IS51 | Mycobacterium bovis | 32 | 0.29 |
| IS986 | IS3 | IS51 | Mycobacterium tuberculosis | 32 | 0.29 |
| IS6110 | IS3 | IS51 | Mycobacterium tuberculosis | 32 | 0.29 |
| ISPa42 | Tn3 | Pseudomonas aeruginosa | 30 | 1.2 | |
| ISHko2 | IS200/IS605 | IS1341 | Halorubrum kocurii | 28 | 4.5 |
| ISHko1 | IS200/IS605 | IS1341 | Halorubrum kocurii | 28 | 4.5 |
| ISMpo4 | IS110 | IS1111 | Methylobacterium populi | 28 | 4.5 |
| ISHje2 | IS200/IS605 | IS605 | Halalkalicoccus jeotgali | 28 | 4.5 |
| ISLefe1 | IS1380 | Leptospirillum ferrooxidans | 28 | 4.5 | |
| ISAzs33 | IS3 | IS150 | Azospirillum sp. | 28 | 4.5 |
| ISAzs7 | IS66 | ISBst12 | Azospirillum sp. | 28 | 4.5 |
| ISUnCu14 | IS66 | Uncultured bacterium | 28 | 4.5 | |
| ISRosp6 | IS5 | Roseobacter sp. | 28 | 4.5 | |
| ISAau3 | IS5 | IS5 | Arthrobacter aurescens | 28 | 4.5 |
| ISAli5 | IS3 | IS150 | Azospirillum lipoferum | 28 | 4.5 |
| ISNisp5 | IS1 | ISMhu11 | Nitrobacter sp. | 28 | 4.5 |
| ISUnCu3 | IS21 | Uncultured bacterium | 28 | 4.5 | |
| ISPen1 | IS4 | IS4 | Pseudomonas entomophila | 28 | 4.5 |
| ISPpu7 | IS21 | - | Pseudomonas putida | 28 | 4.5 |
| ISMav1 | IS21 | - | Mycobacterium avium | 28 | 4.5 |
| IS5D | IS5 | IS5 | Escherichia coli | 28 | 4.5 |
| IS5B | IS5 | IS5 | Escherichia coli | 28 | 4.5 |
| IS5 | IS5 | IS5 | Escherichia coli | 28 | 4.5 |
| IS1612 | IS21 | - | Mycobacterium avium | 28 | 4.5 |
| IS1491 | IS21 | - | Pseudomonas alcaligenes | 28 | 4.5 |
| IS1133 | IS3 | IS3 | Erwinia amylovora | 28 | 4.5 |
>ISBrsp4
Length = 1268
Score = 32.2 bits (16), Expect = 0.29
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 39 ggcgatatccaccgtg 54
||||||||||||||||
Sbjct: 398 ggcgatatccaccgtg 413
>IS987
Length = 1355
Score = 32.2 bits (16), Expect = 0.29
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 117 gcgccaggcgcaggtc 132
||||||||||||||||
Sbjct: 213 gcgccaggcgcaggtc 228
>IS986
Length = 1354
Score = 32.2 bits (16), Expect = 0.29
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 117 gcgccaggcgcaggtc 132
||||||||||||||||
Sbjct: 212 gcgccaggcgcaggtc 227
>IS6110
Length = 1354
Score = 32.2 bits (16), Expect = 0.29
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 117 gcgccaggcgcaggtc 132
||||||||||||||||
Sbjct: 213 gcgccaggcgcaggtc 228
>ISPa42
Length = 16941
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 117 gcgccaggcgcaggt 131
|||||||||||||||
Sbjct: 6073 gcgccaggcgcaggt 6087
>ISHko2
Length = 1389
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 30 ctgcggcgtggcga 43
||||||||||||||
Sbjct: 1016 ctgcggcgtggcga 1029
>ISHko1
Length = 1389
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 30 ctgcggcgtggcga 43
||||||||||||||
Sbjct: 1016 ctgcggcgtggcga 1029
>ISMpo4
Length = 1767
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 79 gccgcttcgaacag 92
||||||||||||||
Sbjct: 969 gccgcttcgaacag 956
>ISHje2
Length = 1837
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 30 ctgcggcgtggcga 43
||||||||||||||
Sbjct: 1461 ctgcggcgtggcga 1474
>ISLefe1
Length = 1710
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 207 ccttcgggaagccc 220
||||||||||||||
Sbjct: 258 ccttcgggaagccc 271
>ISAzs33
Length = 1265
Score = 28.2 bits (14), Expect = 4.5
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 102 gtgttgtccggcaaggcg 119
||||| ||||||||||||
Sbjct: 229 gtgttctccggcaaggcg 246
>ISAzs7
Length = 1455
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 68 ccggcgtggatgcc 81
||||||||||||||
Sbjct: 1329 ccggcgtggatgcc 1316
>ISUnCu14
Length = 2442
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 121 caggcgcaggtcag 134
||||||||||||||
Sbjct: 1240 caggcgcaggtcag 1227
>ISRosp6
Length = 1357
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 156 aatcgcgatattca 169
||||||||||||||
Sbjct: 1020 aatcgcgatattca 1033
>ISAau3
Length = 1205
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 69 cggcgtggatgccg 82
||||||||||||||
Sbjct: 605 cggcgtggatgccg 618
>ISAli5
Length = 1266
Score = 28.2 bits (14), Expect = 4.5
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 101 ggtgttgtccggcaaggc 118
|||||| |||||||||||
Sbjct: 228 ggtgttctccggcaaggc 245
>ISNisp5
Length = 3580
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 37 gtggcgatatccac 50
||||||||||||||
Sbjct: 143 gtggcgatatccac 130
>ISUnCu3
Length = 2596
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 118 cgccaggcgcaggt 131
||||||||||||||
Sbjct: 666 cgccaggcgcaggt 679
>ISPen1
Length = 1514
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 219 cctgccagcaggcg 232
||||||||||||||
Sbjct: 331 cctgccagcaggcg 344
>ISPpu7
Length = 2598
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 118 cgccaggcgcaggt 131
||||||||||||||
Sbjct: 667 cgccaggcgcaggt 680
>ISMav1
Length = 2536
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 47 ccaccgtggcggtg 60
||||||||||||||
Sbjct: 1175 ccaccgtggcggtg 1188
>IS5D
Length = 1283
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 107 gtccggcaaggcgc 120
||||||||||||||
Sbjct: 371 gtccggcaaggcgc 358
>IS5B
Length = 1207
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 107 gtccggcaaggcgc 120
||||||||||||||
Sbjct: 371 gtccggcaaggcgc 358
>IS5
Length = 1195
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 107 gtccggcaaggcgc 120
||||||||||||||
Sbjct: 371 gtccggcaaggcgc 358
>IS1612
Length = 2532
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 47 ccaccgtggcggtg 60
||||||||||||||
Sbjct: 1174 ccaccgtggcggtg 1187
>IS1491
Length = 2481
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 118 cgccaggcgcaggt 131
||||||||||||||
Sbjct: 597 cgccaggcgcaggt 610
>IS1133
Length = 1232
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 162 gatattcatgagcg 175
||||||||||||||
Sbjct: 946 gatattcatgagcg 933
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_378_length_233_cov_0.910256_ID_5924
(233 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISBvi6 | IS5 | IS903 | Burkholderia vietnamiensis | 34 | 0.074 |
| ISMpo3 | IS1380 | Methylobacterium populi | 32 | 0.29 | |
| ISAar10 | IS1380 | Arthrobacter arilaitensis | 32 | 0.29 | |
| ISAnsp4 | IS21 | Anaeromyxobacter sp. | 32 | 0.29 | |
| ISFK1 | IS21 | Bradyrhizobium japonicum | 28 | 4.5 | |
| ISBco6 | ISLre2 | Bacillus coagulans | 28 | 4.5 | |
| ISRel15 | IS66 | Rhizobium etli | 28 | 4.5 | |
| ISAcfe1 | IS1182 | Acidimicrobium ferrooxidans | 28 | 4.5 | |
| ISAcp1 | IS5 | IS5 | Acidobacterium capsulatum | 28 | 4.5 |
| ISRsp18 | IS5 | IS5 | Rhizobium sp. | 28 | 4.5 |
| ISMno5 | ISL3 | Methylobacterium nodulans | 28 | 4.5 | |
| ISApr11 | IS1380 | Alpha proteobacterium | 28 | 4.5 | |
| ISAzo30 | IS630 | Azoarcus sp. | 28 | 4.5 | |
| ISDpr4 | IS66 | Delta proteobacterium | 28 | 4.5 | |
| ISXo14 | IS4 | IS10 | Xanthomonas oryzae | 28 | 4.5 |
| ISXac1 | IS4 | IS10 | Xanthomonas axonopodis | 28 | 4.5 |
| ISXac3 | IS3 | IS51 | Xanthomonas axonopodis | 28 | 4.5 |
| ISMmg2 | IS110 | IS1111 | Magnetospirillum magnetotacticum | 28 | 4.5 |
| ISXc4 | Tn3 | - | Xanthomonas campestris | 28 | 4.5 |
| ISXaca1 | IS4 | IS10 | Xanthomonas campestris | 28 | 4.5 |
| IS1016 | IS1595 | IS1016 | Neisseria gonorrhoeae | 28 | 4.5 |
>ISBvi6
Length = 1047
Score = 34.2 bits (17), Expect = 0.074
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 77 gtcatgcggcaagccta 93
|||||||||||||||||
Sbjct: 50 gtcatgcggcaagccta 34
>ISMpo3
Length = 1617
Score = 32.2 bits (16), Expect = 0.29
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 186 cggcctgggcgagctgcagg 205
|||||||||||||| |||||
Sbjct: 243 cggcctgggcgagcagcagg 224
>ISAar10
Length = 1602
Score = 32.2 bits (16), Expect = 0.29
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 172 tttccctgccttctcg 187
||||||||||||||||
Sbjct: 142 tttccctgccttctcg 157
>ISAnsp4
Length = 2195
Score = 32.2 bits (16), Expect = 0.29
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 182 ttctcggcctgggcga 197
||||||||||||||||
Sbjct: 1668 ttctcggcctgggcga 1653
>ISFK1
Length = 2592
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 206 ccgcgccgttttcg 219
||||||||||||||
Sbjct: 1982 ccgcgccgttttcg 1995
>ISBco6
Length = 1823
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 169 ctgtttccctgcct 182
||||||||||||||
Sbjct: 604 ctgtttccctgcct 617
>ISRel15
Length = 2497
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 177 ctgccttctcggcc 190
||||||||||||||
Sbjct: 961 ctgccttctcggcc 948
>ISAcfe1
Length = 1772
Score = 28.2 bits (14), Expect = 4.5
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 181 cttctcggcctgggcgag 198
||||||||||| ||||||
Sbjct: 765 cttctcggcctcggcgag 748
>ISAcp1
Length = 1483
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 55 ttcctgccgcgccg 68
||||||||||||||
Sbjct: 655 ttcctgccgcgccg 642
>ISRsp18
Length = 1560
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 121 ctgcctgaaagcga 134
||||||||||||||
Sbjct: 1531 ctgcctgaaagcga 1544
>ISMno5
Length = 1728
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 183 tctcggcctgggcg 196
||||||||||||||
Sbjct: 1043 tctcggcctgggcg 1030
>ISApr11
Length = 1667
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 155 ccttcctgattgcc 168
||||||||||||||
Sbjct: 608 ccttcctgattgcc 595
>ISAzo30
Length = 1100
Score = 28.2 bits (14), Expect = 4.5
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 50 cgcaattcctgccgcgcc 67
|||||| |||||||||||
Sbjct: 312 cgcaatacctgccgcgcc 295
>ISDpr4
Length = 2431
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 117 ccatctgcctgaaa 130
||||||||||||||
Sbjct: 838 ccatctgcctgaaa 825
>ISXo14
Length = 1352
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 21 gtcaaaccgcaaga 34
||||||||||||||
Sbjct: 679 gtcaaaccgcaaga 692
>ISXac1
Length = 1350
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 21 gtcaaaccgcaaga 34
||||||||||||||
Sbjct: 678 gtcaaaccgcaaga 691
>ISXac3
Length = 1234
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 186 cggcctgggcgagc 199
||||||||||||||
Sbjct: 721 cggcctgggcgagc 734
>ISMmg2
Length = 1380
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 61 ccgcgccgtgcgat 74
||||||||||||||
Sbjct: 1060 ccgcgccgtgcgat 1047
>ISXc4
Length = 6938
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 21 gtcaaaccgcaaga 34
||||||||||||||
Sbjct: 5653 gtcaaaccgcaaga 5666
>ISXaca1
Length = 1350
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 21 gtcaaaccgcaaga 34
||||||||||||||
Sbjct: 678 gtcaaaccgcaaga 691
>IS1016
Length = 713
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 55 ttcctgccgcgccg 68
||||||||||||||
Sbjct: 304 ttcctgccgcgccg 291
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_379_length_227_cov_0.858974_ID_5926
(227 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISBlo11 | IS3 | IS150 | Bifidobacterium longum | 30 | 1.1 |
| ISHwa20 | IS5 | Haloquadratum walsbyi | 28 | 4.4 |
>ISBlo11
Length = 1432
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 5 gaggttcgccggggc 19
|||||||||||||||
Sbjct: 884 gaggttcgccggggc 870
>ISHwa20
Length = 1075
Score = 28.2 bits (14), Expect = 4.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 9 ttcgccggggcgaa 22
||||||||||||||
Sbjct: 189 ttcgccggggcgaa 176
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_380_length_233_cov_0.858974_ID_5928
(233 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISDvu5 | ISL3 | Desulfovibrio vulgaris | 30 | 1.2 | |
| ISNe7 | IS1595 | ISPna2 | Nitrosomonas europaea | 30 | 1.2 |
| ISPssy | IS5 | IS5 | Pseudomonas syringae | 30 | 1.2 |
| ISEc61 | IS5 | IS1031 | Escherichia coli | 28 | 4.5 |
| ISHas1 | IS200/IS605 | IS605 | Halonotius sp. | 28 | 4.5 |
| ISHla15 | IS200/IS605 | Halorubrum lacusprofundi | 28 | 4.5 | |
| ISHmu5 | IS200/IS605 | Halomicrobium mukohataei | 28 | 4.5 | |
| ISMtu1 | IS256 | Mycobacterium tusciae | 28 | 4.5 | |
| ISCau1 | IS256 | IS1249 | Corynebacterium aurimucosum | 28 | 4.5 |
| ISNml4 | IS256 | Nakamurella multipartita | 28 | 4.5 | |
| ISPa38 | Tn3 | Pseudomonas aeruginosa | 28 | 4.5 | |
| ISAzs28 | IS5 | IS1031 | Azospirillum sp. | 28 | 4.5 |
| ISNph5 | IS200/IS605 | Natronomonas pharaonis | 28 | 4.5 | |
| ISBmu30 | IS66 | Burkholderia multivorans | 28 | 4.5 | |
| ISPam3 | IS3 | IS407 | Paracoccus aminophilus | 28 | 4.5 |
| ISFsp14 | IS1380 | Frankia sp. | 28 | 4.5 | |
| ISBco1 | IS1380 | Bacillus coagulans | 28 | 4.5 | |
| ISCARN116 | IS3 | IS407 | Metagenomic data from CARNOULES | 28 | 4.5 |
| ISMex1 | IS3 | IS407 | Methylobacterium extorquens | 28 | 4.5 |
| ISAli2 | IS630 | Azospirillum lipoferum | 28 | 4.5 | |
| ISMsm3 | IS1380 | Mycobacterium smegmatis | 28 | 4.5 | |
| ISMsm1 | IS3 | IS51 | Mycobacterium smegmatis | 28 | 4.5 |
| ISRta2 | IS256 | Ralstonia taiwanensis | 28 | 4.5 | |
| ISGme5 | ISL3 | Geobacter metallireducens | 28 | 4.5 | |
| ISMca5 | IS256 | Methylococcus capsulatus | 28 | 4.5 | |
| ISBlo11 | IS3 | IS150 | Bifidobacterium longum | 28 | 4.5 |
| ISRru1 | IS3 | IS51 | Rhodococcus ruber | 28 | 4.5 |
| ISSeq4 | IS1634 | Streptococcus equi | 28 | 4.5 | |
| ISDra2 | IS200/IS605 | - | Deinococcus radiodurans | 28 | 4.5 |
| IS8301 | IS200/IS605 | Deinococcus radiodurans | 28 | 4.5 | |
| ISXfu1 | IS5 | IS5 | Xanthomonas fuscans | 28 | 4.5 |
| IS1051 | IS5 | IS5 | Xanthomonas campestris | 28 | 4.5 |
>ISDvu5
Length = 1357
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 97 tgatctacctgatcg 111
|||||||||||||||
Sbjct: 1287 tgatctacctgatcg 1301
>ISNe7
Length = 1050
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 41 gctggcgctgtcctt 55
|||||||||||||||
Sbjct: 560 gctggcgctgtcctt 546
>ISPssy
Length = 1188
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 3 gcggtgatgcgggct 17
|||||||||||||||
Sbjct: 712 gcggtgatgcgggct 726
>ISEc61
Length = 954
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 216 ctgtggcgcgacaa 229
||||||||||||||
Sbjct: 349 ctgtggcgcgacaa 362
>ISHas1
Length = 1955
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 181 acctgctgcacgac 194
||||||||||||||
Sbjct: 708 acctgctgcacgac 721
>ISHla15
Length = 1835
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 160 cgctcaagaagaac 173
||||||||||||||
Sbjct: 850 cgctcaagaagaac 863
>ISHmu5
Length = 1847
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 160 cgctcaagaagaac 173
||||||||||||||
Sbjct: 922 cgctcaagaagaac 935
>ISMtu1
Length = 1474
Score = 28.2 bits (14), Expect = 4.5
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 135 cccgacaccggcgtcgac 152
||||||||||||| ||||
Sbjct: 1381 cccgacaccggcgccgac 1398
>ISCau1
Length = 1449
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 208 tcaagctgctgtgg 221
||||||||||||||
Sbjct: 419 tcaagctgctgtgg 432
>ISNml4
Length = 1462
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 208 tcaagctgctgtgg 221
||||||||||||||
Sbjct: 1230 tcaagctgctgtgg 1243
>ISPa38
Length = 6455
Score = 28.2 bits (14), Expect = 4.5
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 136 ccgacaccggcgtcgacc 153
||||||||||| ||||||
Sbjct: 4798 ccgacaccggcatcgacc 4815
>ISAzs28
Length = 1055
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 216 ctgtggcgcgacaa 229
||||||||||||||
Sbjct: 450 ctgtggcgcgacaa 463
>ISNph5
Length = 1847
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 160 cgctcaagaagaac 173
||||||||||||||
Sbjct: 922 cgctcaagaagaac 935
>ISBmu30
Length = 2344
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 179 ctacctgctgcacg 192
||||||||||||||
Sbjct: 2048 ctacctgctgcacg 2061
>ISPam3
Length = 1197
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 110 cgcggccattttca 123
||||||||||||||
Sbjct: 1155 cgcggccattttca 1142
>ISFsp14
Length = 1696
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 185 gctgcacgacttca 198
||||||||||||||
Sbjct: 1240 gctgcacgacttca 1253
>ISBco1
Length = 1665
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 26 aatgtttatacatc 39
||||||||||||||
Sbjct: 737 aatgtttatacatc 750
>ISCARN116
Length = 1260
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 207 ctcaagctgctgtg 220
||||||||||||||
Sbjct: 1100 ctcaagctgctgtg 1087
>ISMex1
Length = 1200
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 79 cgctgatgatcgtc 92
||||||||||||||
Sbjct: 849 cgctgatgatcgtc 862
>ISAli2
Length = 1171
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 137 cgacaccggcgtcg 150
||||||||||||||
Sbjct: 785 cgacaccggcgtcg 798
>ISMsm3
Length = 1695
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 5 ggtgatgcgggctg 18
||||||||||||||
Sbjct: 1428 ggtgatgcgggctg 1415
>ISMsm1
Length = 1345
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 103 acctgatcgcggcc 116
||||||||||||||
Sbjct: 650 acctgatcgcggcc 637
>ISRta2
Length = 1386
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 209 caagctgctgtggc 222
||||||||||||||
Sbjct: 1188 caagctgctgtggc 1201
>ISGme5
Length = 1326
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 196 tcaatcactgcctc 209
||||||||||||||
Sbjct: 1175 tcaatcactgcctc 1188
>ISMca5
Length = 1390
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 209 caagctgctgtggc 222
||||||||||||||
Sbjct: 1193 caagctgctgtggc 1206
>ISBlo11
Length = 1432
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 2 cgcggtgatgcggg 15
||||||||||||||
Sbjct: 455 cgcggtgatgcggg 468
>ISRru1
Length = 1345
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 103 acctgatcgcggcc 116
||||||||||||||
Sbjct: 641 acctgatcgcggcc 628
>ISSeq4
Length = 1916
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 156 aagacgctcaagaa 169
||||||||||||||
Sbjct: 277 aagacgctcaagaa 264
>ISDra2
Length = 1736
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 6 gtgatgcgggctgg 19
||||||||||||||
Sbjct: 1389 gtgatgcgggctgg 1402
>IS8301
Length = 1741
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 6 gtgatgcgggctgg 19
||||||||||||||
Sbjct: 1389 gtgatgcgggctgg 1402
>ISXfu1
Length = 1162
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 101 ctacctgatcgcgg 114
||||||||||||||
Sbjct: 778 ctacctgatcgcgg 791
>IS1051
Length = 1158
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 101 ctacctgatcgcgg 114
||||||||||||||
Sbjct: 383 ctacctgatcgcgg 370
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_381_length_233_cov_1.17949_ID_5930
(233 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISThsp11 | IS3 | IS3 | Thiomonas sp. | 32 | 0.29 |
| IS1648 | IS5 | IS427 | Streptomyces coelicolor | 32 | 0.29 |
| ISUnCu17 | IS1182 | Uncultured bacteria | 30 | 1.2 | |
| ISNha6 | IS5 | IS5 | Nitrobacter hamburgensis | 30 | 1.2 |
| ISMno14 | IS110 | IS1111 | Methylobacterium nodulans | 30 | 1.2 |
| ISSpe4 | IS110 | Shewanella pealeana | 30 | 1.2 | |
| ISAeme10 | IS1595 | ISPna2 | Aeromonas media | 28 | 4.5 |
| ISRsp12 | Tn3 | Rhizhobium sp. | 28 | 4.5 | |
| ISMfu2 | ISKra4 | ISKra4 | Myxococcus fulvus | 28 | 4.5 |
| ISMye1 | IS256 | ISC1250 | Metallosphaera yellowstonensis | 28 | 4.5 |
| ISAzs35 | IS110 | IS1111 | Azospirillum sp. | 28 | 4.5 |
| ISAzs32 | IS110 | IS1111 | Azospirillum sp. | 28 | 4.5 |
| ISMlo5 | ISNCY | ISDol1 | Mesorhizobium loti | 28 | 4.5 |
| ISRsp17 | ISNCY | ISDol1 | Rhizobium sp. | 28 | 4.5 |
| ISMch8 | IS5 | IS5 | Methylobacterium chloromethanicum | 28 | 4.5 |
| ISSav7 | IS481 | Streptomyces avermitilis | 28 | 4.5 | |
| ISMysp4 | IS481 | Mycobacterium sp. | 28 | 4.5 | |
| ISDpr1 | IS4 | IS4Sa | delta proteobacterium | 28 | 4.5 |
| ISDha3 | IS4 | IS4Sa | Desulfitobacterium hafniense | 28 | 4.5 |
| ISHma9 | IS5 | ISH1 | Haloarcula marismortui | 28 | 4.5 |
| IS801 | IS91 | - | Pseudomonas syringae | 28 | 4.5 |
| IS52 | IS5 | IS5 | Pseudomonas syringae | 28 | 4.5 |
| IS1341 | IS200/IS605 | IS1341 | Thermophilic bacterium | 28 | 4.5 |
| IS1240 | IS3 | IS3 | Pseudomonas syringae | 28 | 4.5 |
| IS1021 | IS5 | IS5 | Ralstonia solanacearum | 28 | 4.5 |
>ISThsp11
Length = 1814
Score = 32.2 bits (16), Expect = 0.29
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 123 cggcgcagcgcgcagc 138
||||||||||||||||
Sbjct: 755 cggcgcagcgcgcagc 770
>IS1648
Length = 969
Score = 32.2 bits (16), Expect = 0.29
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 13 ctcacccccggccaaagggg 32
||||||||||||||| ||||
Sbjct: 543 ctcacccccggccaatgggg 562
>ISUnCu17
Length = 1481
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 128 cagcgcgcagcgcgt 142
|||||||||||||||
Sbjct: 974 cagcgcgcagcgcgt 988
>ISNha6
Length = 1547
Score = 30.2 bits (15), Expect = 1.2
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 133 cgcagcgcgtgggccagcg 151
|||| ||||||||||||||
Sbjct: 933 cgcaccgcgtgggccagcg 915
>ISMno14
Length = 1428
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 130 gcgcgcagcgcgtgg 144
|||||||||||||||
Sbjct: 346 gcgcgcagcgcgtgg 332
>ISSpe4
Length = 1364
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 89 ccgctgacaacgcac 103
|||||||||||||||
Sbjct: 943 ccgctgacaacgcac 929
>ISAeme10
Length = 1032
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 143 gggccagcggcgtc 156
||||||||||||||
Sbjct: 329 gggccagcggcgtc 316
>ISRsp12
Length = 3701
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 122 acggcgcagcgcgc 135
||||||||||||||
Sbjct: 566 acggcgcagcgcgc 553
>ISMfu2
Length = 1554
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 50 agacggggggcgtc 63
||||||||||||||
Sbjct: 327 agacggggggcgtc 314
>ISMye1
Length = 1198
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 5 agtcccccctcacc 18
||||||||||||||
Sbjct: 527 agtcccccctcacc 514
>ISAzs35
Length = 1524
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 69 ggcaggggatattg 82
||||||||||||||
Sbjct: 210 ggcaggggatattg 223
>ISAzs32
Length = 1601
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 134 gcagcgcgtgggcc 147
||||||||||||||
Sbjct: 959 gcagcgcgtgggcc 946
>ISMlo5
Length = 1664
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 127 gcagcgcgcagcgc 140
||||||||||||||
Sbjct: 342 gcagcgcgcagcgc 329
>ISRsp17
Length = 1664
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 127 gcagcgcgcagcgc 140
||||||||||||||
Sbjct: 344 gcagcgcgcagcgc 331
>ISMch8
Length = 1494
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 141 gtgggccagcggcg 154
||||||||||||||
Sbjct: 1479 gtgggccagcggcg 1466
>ISSav7
Length = 2992
Score = 28.2 bits (14), Expect = 4.5
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 130 gcgcgcagcgcgtgggcc 147
|||||||||||| |||||
Sbjct: 288 gcgcgcagcgcgcgggcc 305
>ISMysp4
Length = 1090
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 97 aacgcactcattca 110
||||||||||||||
Sbjct: 80 aacgcactcattca 93
>ISDpr1
Length = 1325
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 212 gttttttcatgatg 225
||||||||||||||
Sbjct: 1160 gttttttcatgatg 1147
>ISDha3
Length = 1593
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 213 ttttttcatgatgt 226
||||||||||||||
Sbjct: 119 ttttttcatgatgt 106
>ISHma9
Length = 929
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 87 cgccgctgacaacg 100
||||||||||||||
Sbjct: 615 cgccgctgacaacg 628
>IS801
Length = 1512
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 141 gtgggccagcggcg 154
||||||||||||||
Sbjct: 777 gtgggccagcggcg 764
>IS52
Length = 1209
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 33 gcaactcgaagcgc 46
||||||||||||||
Sbjct: 186 gcaactcgaagcgc 199
>IS1341
Length = 1353
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 112 cgctttctgaacgg 125
||||||||||||||
Sbjct: 1228 cgctttctgaacgg 1241
>IS1240
Length = 1668
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 42 agcgccccagacgg 55
||||||||||||||
Sbjct: 943 agcgccccagacgg 956
>IS1021
Length = 1209
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 134 gcagcgcgtgggcc 147
||||||||||||||
Sbjct: 718 gcagcgcgtgggcc 705
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_382_length_233_cov_0.769231_ID_5932
(233 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISCARN89 | IS21 | Metagenomic data from CARNOULES | 32 | 0.29 | |
| ISAzo22 | IS110 | Azoarcus sp. | 32 | 0.29 | |
| ISMysp1 | IS110 | Mycobacterium sp. | 32 | 0.29 | |
| TnAs3 | Tn3 | Aeromonas salmonicida | 30 | 1.2 | |
| ISMex45 | IS200/IS605 | IS1341 | Methylobacterium extorquens | 30 | 1.2 |
| ISAzs17 | Tn3 | Azospirillum sp. | 30 | 1.2 | |
| ISPna4 | IS5 | IS903 | Polaromonas naphthalenivorans | 30 | 1.2 |
| ISCARN18 | IS110 | IS1111 | Metagenomic data from CARNOULES | 30 | 1.2 |
| ISGdi14 | IS3 | IS51 | Gluconacetobacter diazotrophicus | 30 | 1.2 |
| ISPosp6 | IS481 | Polaromonas sp. | 30 | 1.2 | |
| ISArch7 | IS66 | ISBst12 | Uncultured archeon | 30 | 1.2 |
| IS30D | IS30 | - | Escherichia coli | 30 | 1.2 |
| IS30 | IS30 | - | Escherichia coli | 30 | 1.2 |
| IS1416 | IS3 | IS51 | Burkholderia glumae | 30 | 1.2 |
| ISAve3 | IS3 | IS2 | Aeromonas veronii | 28 | 4.5 |
| ISAs25 | IS1634 | Aeromonas salmonicida | 28 | 4.5 | |
| ISAs17 | IS3 | IS2 | Aeromonas salmonicida | 28 | 4.5 |
| ISPa40 | Tn3 | Pseudomonas aeruginosa | 28 | 4.5 | |
| ISSdi1 | IS1182 | Streptomyces diastaticus | 28 | 4.5 | |
| ISMau1 | IS5 | ISL2 | Micromonospora aurantiaca | 28 | 4.5 |
| ISVsp4 | IS66 | Verrucomicrobium spinosum | 28 | 4.5 | |
| ISMno15 | IS1182 | Methylobacterium nodulans | 28 | 4.5 | |
| ISPfr8 | ISL3 | Propionibacterium freudenreichii | 28 | 4.5 | |
| ISThsp13 | IS1380 | Thiomonas sp. | 28 | 4.5 | |
| ISGob1 | IS66 | ISBst12 | Gemmata obscuriglobus | 28 | 4.5 |
| ISDge10 | IS200/IS605 | Deinococcus geothermalis | 28 | 4.5 | |
| ISSsp5 | IS21 | Sphingomonas sp. | 28 | 4.5 | |
| ISAzo8 | ISAs1 | Azoarcus sp. | 28 | 4.5 | |
| ISGur11 | IS481 | Geobacter uraniumreducens | 28 | 4.5 | |
| ISNmo3 | IS481 | Nitrococcus mobilis | 28 | 4.5 | |
| ISRtr2 | IS3 | IS51 | Rhizobium tropici | 28 | 4.5 |
| ISRm14 | IS66 | - | Sinorhizobium meliloti | 28 | 4.5 |
| IS868 | IS3 | IS51 | Agrobacterium tumefaciens | 28 | 4.5 |
| IS204 | ISL3 | - | Nocardia asteroides | 28 | 4.5 |
| IS1246 | IS5 | IS5 | Pseudomonas putida | 28 | 4.5 |
| IS10A | IS4 | IS10 | Pseudomonas aeruginosa | 28 | 4.5 |
| IS1000B | IS110 | - | Thermus thermophilus | 28 | 4.5 |
| IS1000A | IS110 | - | Thermus thermophilus | 28 | 4.5 |
>ISCARN89
Length = 2461
Score = 32.2 bits (16), Expect = 0.29
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 105 gagttgctggcgcagg 120
||||||||||||||||
Sbjct: 1733 gagttgctggcgcagg 1748
>ISAzo22
Length = 1763
Score = 32.2 bits (16), Expect = 0.29
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 32 agagggtcaggccgag 47
||||||||||||||||
Sbjct: 1630 agagggtcaggccgag 1615
>ISMysp1
Length = 1461
Score = 32.2 bits (16), Expect = 0.29
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 104 cgagttgctggcgcag 119
||||||||||||||||
Sbjct: 718 cgagttgctggcgcag 703
>TnAs3
Length = 18735
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 213 aagctgctcgccctg 227
|||||||||||||||
Sbjct: 13317 aagctgctcgccctg 13303
>ISMex45
Length = 1270
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 36 ggtcaggccgaggtc 50
|||||||||||||||
Sbjct: 669 ggtcaggccgaggtc 655
>ISAzs17
Length = 7252
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 61 tccggtcgatgccct 75
|||||||||||||||
Sbjct: 5586 tccggtcgatgccct 5572
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 216 ctgctcgccctgga 229
||||||||||||||
Sbjct: 1926 ctgctcgccctgga 1939
>ISPna4
Length = 1093
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 104 cgagttgctggcgca 118
|||||||||||||||
Sbjct: 634 cgagttgctggcgca 648
>ISCARN18
Length = 1561
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 49 tcatctccgtgctcc 63
|||||||||||||||
Sbjct: 55 tcatctccgtgctcc 41
>ISGdi14
Length = 1318
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 40 aggccgaggtcatct 54
|||||||||||||||
Sbjct: 1098 aggccgaggtcatct 1112
>ISPosp6
Length = 1026
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 133 tgcgctatgagcgcg 147
|||||||||||||||
Sbjct: 454 tgcgctatgagcgcg 468
>ISArch7
Length = 1839
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 144 cgcgaggagatcgta 158
|||||||||||||||
Sbjct: 1025 cgcgaggagatcgta 1039
>IS30D
Length = 1221
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 140 tgagcgcgaggagat 154
|||||||||||||||
Sbjct: 248 tgagcgcgaggagat 262
>IS30
Length = 1221
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 140 tgagcgcgaggagat 154
|||||||||||||||
Sbjct: 248 tgagcgcgaggagat 262
>IS1416
Length = 1322
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 142 agcgcgaggagatcg 156
|||||||||||||||
Sbjct: 208 agcgcgaggagatcg 222
>ISAve3
Length = 1333
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 77 gctcaaaggtctgc 90
||||||||||||||
Sbjct: 176 gctcaaaggtctgc 163
>ISAs25
Length = 1722
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 205 gcagcatcaagctg 218
||||||||||||||
Sbjct: 1119 gcagcatcaagctg 1106
>ISAs17
Length = 1333
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 77 gctcaaaggtctgc 90
||||||||||||||
Sbjct: 176 gctcaaaggtctgc 163
>ISPa40
Length = 6592
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 36 ggtcaggccgaggt 49
||||||||||||||
Sbjct: 5464 ggtcaggccgaggt 5451
>ISSdi1
Length = 1789
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 199 tcgagggcagcatc 212
||||||||||||||
Sbjct: 1547 tcgagggcagcatc 1560
>ISMau1
Length = 914
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 215 gctgctcgccctgg 228
||||||||||||||
Sbjct: 249 gctgctcgccctgg 262
>ISVsp4
Length = 2518
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 215 gctgctcgccctgg 228
||||||||||||||
Sbjct: 474 gctgctcgccctgg 487
>ISMno15
Length = 1561
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 111 ctggcgcaggaggc 124
||||||||||||||
Sbjct: 898 ctggcgcaggaggc 911
>ISPfr8
Length = 1436
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 40 aggccgaggtcatc 53
||||||||||||||
Sbjct: 186 aggccgaggtcatc 173
>ISThsp13
Length = 1583
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 208 gcatcaagctgctc 221
||||||||||||||
Sbjct: 1287 gcatcaagctgctc 1300
>ISGob1
Length = 1575
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 104 cgagttgctggcgc 117
||||||||||||||
Sbjct: 1224 cgagttgctggcgc 1237
>ISDge10
Length = 1757
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 38 tcaggccgaggtca 51
||||||||||||||
Sbjct: 1115 tcaggccgaggtca 1102
>ISSsp5
Length = 2501
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 134 gcgctatgagcgcg 147
||||||||||||||
Sbjct: 2186 gcgctatgagcgcg 2199
>ISAzo8
Length = 1261
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 202 agggcagcatcaag 215
||||||||||||||
Sbjct: 1166 agggcagcatcaag 1179
>ISGur11
Length = 1837
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 111 ctggcgcaggaggc 124
||||||||||||||
Sbjct: 1404 ctggcgcaggaggc 1391
>ISNmo3
Length = 1061
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 113 ggcgcaggaggcaa 126
||||||||||||||
Sbjct: 289 ggcgcaggaggcaa 302
>ISRtr2
Length = 1321
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 40 aggccgaggtcatc 53
||||||||||||||
Sbjct: 1101 aggccgaggtcatc 1114
>ISRm14
Length = 2695
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 39 caggccgaggtcat 52
||||||||||||||
Sbjct: 1627 caggccgaggtcat 1640
>IS868
Length = 1321
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 40 aggccgaggtcatc 53
||||||||||||||
Sbjct: 1101 aggccgaggtcatc 1114
>IS204
Length = 1452
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 107 gttgctggcgcagg 120
||||||||||||||
Sbjct: 709 gttgctggcgcagg 722
>IS1246
Length = 1275
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 58 tgctccggtcgatg 71
||||||||||||||
Sbjct: 786 tgctccggtcgatg 773
>IS10A
Length = 1329
Score = 28.2 bits (14), Expect = 4.5
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 201 gagggcagcatcaagctg 218
|||| |||||||||||||
Sbjct: 196 gaggccagcatcaagctg 179
>IS1000B
Length = 1196
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 220 tcgccctggagccc 233
||||||||||||||
Sbjct: 347 tcgccctggagccc 360
>IS1000A
Length = 1196
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 220 tcgccctggagccc 233
||||||||||||||
Sbjct: 347 tcgccctggagccc 360
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_383_length_233_cov_0.75_ID_5934
(233 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| TnXo19 | Tn3 | Xanthomonas oryzae | 32 | 0.29 | |
| TnShfr1 | Tn3 | Shewanella frigidimarina | 32 | 0.29 | |
| ISCARN61 | IS256 | Metagenomic data from CARNOULES | 32 | 0.29 | |
| ISCARN47 | IS256 | Metagenomic data from CARNOULES | 32 | 0.29 | |
| ISGme3 | IS5 | IS5 | Geobacter metallireducens | 30 | 1.2 |
| ISDpr2 | IS4 | ISPepr1 | Delta proteobacterium | 30 | 1.2 |
| ISMyin1 | ISNCY | ISDol1 | Mycobacterium indicus | 28 | 4.5 |
| ISNha10 | IS256 | Nitrobacter hamburgensis | 28 | 4.5 | |
| ISHth2 | ISH6 | Halococcus thailandensis | 28 | 4.5 | |
| ISGte1 | IS256 | Gordonia terrae | 28 | 4.5 | |
| ISClbo1 | IS1182 | Clostridium bolteae | 28 | 4.5 | |
| ISRssp9 | IS1380 | Roseovarius sp. | 28 | 4.5 | |
| ISAzba6 | IS630 | Azospirillum brasilense | 28 | 4.5 | |
| ISDds2 | IS4 | IS10 | Deinococcus deserti | 28 | 4.5 |
| ISRhru1 | IS1595 | ISSod11 | Rhodospirillum rubrum | 28 | 4.5 |
| ISXc4 | Tn3 | - | Xanthomonas campestris | 28 | 4.5 |
| IS408 | IS21 | - | Burkholderia cepacia | 28 | 4.5 |
>TnXo19
Length = 18767
Score = 32.2 bits (16), Expect = 0.29
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 133 gatcagcatgaacgcc 148
||||||||||||||||
Sbjct: 4434 gatcagcatgaacgcc 4419
>TnShfr1
Length = 5131
Score = 32.2 bits (16), Expect = 0.29
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 109 gaagaaacccggcgccagca 128
||||||||||||||| ||||
Sbjct: 2409 gaagaaacccggcgcgagca 2428
>ISCARN61
Length = 1368
Score = 32.2 bits (16), Expect = 0.29
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 139 catgaacgccagcaca 154
||||||||||||||||
Sbjct: 1066 catgaacgccagcaca 1051
>ISCARN47
Length = 1368
Score = 32.2 bits (16), Expect = 0.29
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 139 catgaacgccagcaca 154
||||||||||||||||
Sbjct: 1066 catgaacgccagcaca 1051
>ISGme3
Length = 1484
Score = 30.2 bits (15), Expect = 1.2
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 191 accaccgcctcttcgctca 209
||||||||||| |||||||
Sbjct: 347 accaccgcctcatcgctca 329
>ISDpr2
Length = 1549
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 60 ccatgcagatgaccg 74
|||||||||||||||
Sbjct: 896 ccatgcagatgaccg 882
>ISMyin1
Length = 1532
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 172 cagcgccctggccg 185
||||||||||||||
Sbjct: 1430 cagcgccctggccg 1443
>ISNha10
Length = 1428
Score = 28.2 bits (14), Expect = 4.5
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 28 gatcaggatcaggttcat 45
|||||| |||||||||||
Sbjct: 455 gatcagcatcaggttcat 438
>ISHth2
Length = 1442
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 192 ccaccgcctcttcg 205
||||||||||||||
Sbjct: 1178 ccaccgcctcttcg 1165
>ISGte1
Length = 1503
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 165 aggcctgcagcgcc 178
||||||||||||||
Sbjct: 157 aggcctgcagcgcc 144
>ISClbo1
Length = 1603
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 130 cttgatcagcatga 143
||||||||||||||
Sbjct: 326 cttgatcagcatga 313
>ISRssp9
Length = 1716
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 108 cgaagaaacccggc 121
||||||||||||||
Sbjct: 1498 cgaagaaacccggc 1511
>ISAzba6
Length = 1138
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 120 gcgccagcaccttg 133
||||||||||||||
Sbjct: 352 gcgccagcaccttg 339
>ISDds2
Length = 1069
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 31 caggatcaggttca 44
||||||||||||||
Sbjct: 348 caggatcaggttca 335
>ISRhru1
Length = 1027
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 118 cggcgccagcacct 131
||||||||||||||
Sbjct: 869 cggcgccagcacct 882
>ISXc4
Length = 6938
Score = 28.2 bits (14), Expect = 4.5
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 28 gatcaggatcaggttcat 45
||||||||||| ||||||
Sbjct: 6664 gatcaggatcatgttcat 6647
>IS408
Length = 2798
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 30 tcaggatcaggttc 43
||||||||||||||
Sbjct: 2153 tcaggatcaggttc 2140
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_384_length_233_cov_1.20513_ID_5936
(233 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISCph10 | IS1380 | Chlorobium phaeobacteroides | 38 | 0.005 | |
| ISCph7 | IS1380 | Chlorobium phaeobacteroides | 38 | 0.005 | |
| ISCph6 | IS1380 | Chlorobium phaeobacteroides | 38 | 0.005 | |
| IS1311 | IS256 | - | Mycobacterium avium | 36 | 0.019 |
| ISPsy13 | IS3 | IS3 | Pseudomonas syringae | 34 | 0.074 |
| ISDssp2 | ISAzo13 | Desulfobacterium sp. | 32 | 0.29 | |
| ISBam3 | IS5 | IS903 | Burkholderia ambifaria | 30 | 1.2 |
| ISRssp9 | IS1380 | Roseovarius sp. | 30 | 1.2 | |
| ISAnsp11 | IS3 | IS3 | Anaeromyxobacter sp. | 30 | 1.2 |
| ISMdi16 | IS3 | IS407 | Methylobacterium dichloromethanicum | 30 | 1.2 |
| ISMex22 | Tn3 | Methylobacterium extorquens | 30 | 1.2 | |
| ISBxe3 | IS481 | Burkholderia xenovorans | 30 | 1.2 | |
| TnXo19 | Tn3 | Xanthomonas oryzae | 28 | 4.5 | |
| TnAs3 | Tn3 | Aeromonas salmonicida | 28 | 4.5 | |
| ISNisp4 | IS256 | Nitrobacter sp. | 28 | 4.5 | |
| ISSsv1 | IS5 | IS427 | Streptomyces sviceus | 28 | 4.5 |
| ISMau1 | IS5 | ISL2 | Micromonospora aurantiaca | 28 | 4.5 |
| ISMgi2 | IS1182 | Mycobacterium gilvum | 28 | 4.5 | |
| ISMra3 | IS256 | Methylobacterium radiotolerans | 28 | 4.5 | |
| ISMtsp7 | IS110 | IS1111 | Methylobacterium sp. | 28 | 4.5 |
| ISAau5 | ISNCY | Arthrobacter aurescens | 28 | 4.5 | |
| IS692 | IS66 | Agrobacterium tumefaciens | 28 | 4.5 | |
| ISPosp7 | IS1380 | Polaromonas sp. | 28 | 4.5 | |
| ISMdi13 | IS256 | Methylobacterium dichloromethanicum | 28 | 4.5 | |
| ISMdi6 | IS1182 | Methylobacterium dichloromethanicum | 28 | 4.5 | |
| ISMex36 | IS1182 | Methylobacterium extorquens | 28 | 4.5 | |
| ISMex29 | IS110 | IS1111 | Methylobacterium extorquens | 28 | 4.5 |
| ISCARN86 | IS3 | IS407 | Metagenomic data from CARNOULES | 28 | 4.5 |
| ISCARN17 | IS21 | Metagenomic data from CARNOULES | 28 | 4.5 | |
| ISBlma9 | IS66 | Blastopirellula marina | 28 | 4.5 | |
| ISUnCu4 | IS30 | Plasmid QKH54 | 28 | 4.5 | |
| ISMpo2 | IS1595 | ISNwi1 | Methylobacterium populi | 28 | 4.5 |
| ISLca4 | ISLre2 | Lactobacillus casei | 28 | 4.5 | |
| ISApu2 | IS4 | ISH8 | Aeromonas punctata | 28 | 4.5 |
| IS1489v1 | ISL3 | - | Pseudomonas putida | 28 | 4.5 |
>ISCph10
Length = 1785
Score = 38.2 bits (19), Expect = 0.005
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 141 tgtcggtgctgatgaagcg 159
|||||||||||||||||||
Sbjct: 1105 tgtcggtgctgatgaagcg 1087
>ISCph7
Length = 1778
Score = 38.2 bits (19), Expect = 0.005
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 141 tgtcggtgctgatgaagcg 159
|||||||||||||||||||
Sbjct: 1105 tgtcggtgctgatgaagcg 1087
>ISCph6
Length = 1778
Score = 38.2 bits (19), Expect = 0.005
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 141 tgtcggtgctgatgaagcg 159
|||||||||||||||||||
Sbjct: 1105 tgtcggtgctgatgaagcg 1087
>IS1311
Length = 1416
Score = 36.2 bits (18), Expect = 0.019
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 137 ggcgtgtcggtgctgatg 154
||||||||||||||||||
Sbjct: 33 ggcgtgtcggtgctgatg 50
>ISPsy13
Length = 1232
Score = 34.2 bits (17), Expect = 0.074
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 163 ctcgccgatggcgcgtg 179
|||||||||||||||||
Sbjct: 1024 ctcgccgatggcgcgtg 1040
>ISDssp2
Length = 1318
Score = 32.2 bits (16), Expect = 0.29
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 117 cggcaaattccggtgtgtcg 136
|||||||||||| |||||||
Sbjct: 836 cggcaaattccgatgtgtcg 817
>ISBam3
Length = 1133
Score = 30.2 bits (15), Expect = 1.2
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 18 cgtgctgaaccgcttggcg 36
||||||||||||| |||||
Sbjct: 1025 cgtgctgaaccgcatggcg 1043
>ISRssp9
Length = 1716
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 157 gcggcgctcgccgat 171
|||||||||||||||
Sbjct: 522 gcggcgctcgccgat 536
>ISAnsp11
Length = 1510
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 204 gacggagcagggcgc 218
|||||||||||||||
Sbjct: 220 gacggagcagggcgc 206
>ISMdi16
Length = 1271
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 21 gctgaaccgcttggc 35
|||||||||||||||
Sbjct: 1188 gctgaaccgcttggc 1174
>ISMex22
Length = 3864
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 101 atggcggtgaccacc 115
|||||||||||||||
Sbjct: 3626 atggcggtgaccacc 3612
>ISBxe3
Length = 1279
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 140 gtgtcggtgctgatg 154
|||||||||||||||
Sbjct: 628 gtgtcggtgctgatg 614
>TnXo19
Length = 18767
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 105 cggtgaccaccgcg 118
||||||||||||||
Sbjct: 12188 cggtgaccaccgcg 12175
>TnAs3
Length = 18735
Score = 28.2 bits (14), Expect = 4.5
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 160 gcgctcgccgatggcgcg 177
|||| |||||||||||||
Sbjct: 4463 gcgcacgccgatggcgcg 4446
>ISNisp4
Length = 1418
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 164 tcgccgatggcgcg 177
||||||||||||||
Sbjct: 827 tcgccgatggcgcg 840
>ISSsv1
Length = 967
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 191 acgcggcccagcgg 204
||||||||||||||
Sbjct: 549 acgcggcccagcgg 536
>ISMau1
Length = 914
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 164 tcgccgatggcgcg 177
||||||||||||||
Sbjct: 776 tcgccgatggcgcg 763
>ISMgi2
Length = 1770
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 104 gcggtgaccaccgc 117
||||||||||||||
Sbjct: 463 gcggtgaccaccgc 450
>ISMra3
Length = 1398
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 156 agcggcgctcgccg 169
||||||||||||||
Sbjct: 1226 agcggcgctcgccg 1213
>ISMtsp7
Length = 1316
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 164 tcgccgatggcgcg 177
||||||||||||||
Sbjct: 567 tcgccgatggcgcg 580
>ISAau5
Length = 3989
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 211 cagggcgcgcagca 224
||||||||||||||
Sbjct: 2681 cagggcgcgcagca 2668
>IS692
Length = 2563
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 144 cggtgctgatgaag 157
||||||||||||||
Sbjct: 1120 cggtgctgatgaag 1133
>ISPosp7
Length = 1612
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 107 gtgaccaccgcggc 120
||||||||||||||
Sbjct: 1321 gtgaccaccgcggc 1308
>ISMdi13
Length = 1416
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 164 tcgccgatggcgcg 177
||||||||||||||
Sbjct: 825 tcgccgatggcgcg 838
>ISMdi6
Length = 1466
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 99 tcatggcggtgacc 112
||||||||||||||
Sbjct: 331 tcatggcggtgacc 344
>ISMex36
Length = 1467
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 99 tcatggcggtgacc 112
||||||||||||||
Sbjct: 331 tcatggcggtgacc 344
>ISMex29
Length = 1339
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 58 ctcctcttcgagca 71
||||||||||||||
Sbjct: 613 ctcctcttcgagca 626
>ISCARN86
Length = 1289
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 184 atcaaccacgcggc 197
||||||||||||||
Sbjct: 424 atcaaccacgcggc 437
>ISCARN17
Length = 2539
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 153 tgaagcggcgctcg 166
||||||||||||||
Sbjct: 1909 tgaagcggcgctcg 1896
>ISBlma9
Length = 2606
Score = 28.2 bits (14), Expect = 4.5
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 67 gagcatggtgcgcacgcg 84
||||||||||||| ||||
Sbjct: 2009 gagcatggtgcgctcgcg 1992
>ISUnCu4
Length = 1113
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 189 ccacgcggcccagc 202
||||||||||||||
Sbjct: 217 ccacgcggcccagc 230
>ISMpo2
Length = 3089
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 151 gatgaagcggcgct 164
||||||||||||||
Sbjct: 2380 gatgaagcggcgct 2367
>ISLca4
Length = 1595
Score = 28.2 bits (14), Expect = 4.5
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 14 gcatcgtgctgaaccgct 31
||||| ||||||||||||
Sbjct: 978 gcatcatgctgaaccgct 961
>ISApu2
Length = 1388
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 134 tcgggcgtgtcggt 147
||||||||||||||
Sbjct: 96 tcgggcgtgtcggt 83
>IS1489v1
Length = 1898
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 129 gtgtgtcgggcgtg 142
||||||||||||||
Sbjct: 467 gtgtgtcgggcgtg 480
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_385_length_233_cov_0.955128_ID_5938
(233 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| TnAs2 | Tn3 | Aeromonas salmonicida | 34 | 0.074 | |
| ISAfe3 | IS110 | Acidithiobacillus ferrooxidans | 34 | 0.074 | |
| ISSam1 | IS110 | Streptomyces ambofaciens | 34 | 0.074 | |
| ISGsu1 | IS4 | IS4Sa | Geobacter sulfurreducens | 34 | 0.074 |
| ISLke1 | ISLre2 | Lactobacillus kefiranofaciens | 30 | 1.2 | |
| ISLhe13 | ISLre2 | Lactobacillus helveticus | 30 | 1.2 | |
| ISButh6 | IS5 | Burkholderia thailandensis | 30 | 1.2 | |
| ISRce1 | ISAs1 | Rhodospirillum centenum | 30 | 1.2 | |
| IS408 | IS21 | - | Burkholderia cepacia | 30 | 1.2 |
| ISShdy2 | IS66 | Shigella dysenteriae | 28 | 4.5 | |
| ISNje1 | IS200/IS605 | IS1341 | Natronococcus jeotgali | 28 | 4.5 |
| ISMno29 | IS110 | Methylobacterium nodulans | 28 | 4.5 | |
| ISNaoc4 | IS200/IS605 | IS1341 | Natronococcus occultus | 28 | 4.5 |
| ISKpn23 | IS1380 | Klebsiella pneumoniae | 28 | 4.5 | |
| ISRsp13 | IS5 | Rhizhobium sp. | 28 | 4.5 | |
| ISIde1 | ISL3 | Ideonella dechloratans | 28 | 4.5 | |
| ISBlo17 | IS256 | IS1249 | Bifidobacterium longum | 28 | 4.5 |
| ISApr14 | IS256 | alpha proteobacterium | 28 | 4.5 | |
| ISPa43 | Tn3 | Pseudomonas aeruginosa | 28 | 4.5 | |
| ISPfe2 | IS1634 | Paracoccus ferrooxidans | 28 | 4.5 | |
| ISGosp1 | IS1380 | Gordonia sp. | 28 | 4.5 | |
| ISRme16 | IS5 | Ralstonia eutropha | 28 | 4.5 | |
| ISStma11 | ISL3 | Stenotrophomonas maltophilia | 28 | 4.5 | |
| ISStma10 | IS630 | Stenotrophomonas maltophilia | 28 | 4.5 | |
| ISAzo15 | IS66 | Azoarcus sp. | 28 | 4.5 | |
| ISCARN34 | IS1380 | Metagenomic data from CARNOULES | 28 | 4.5 | |
| ISMysp6 | IS481 | Mycobacterium sp. | 28 | 4.5 | |
| ISSst2 | IS1595 | ISNha5 | Sagittula stellata | 28 | 4.5 |
| ISHar6 | IS110 | IS1111 | Herminiimonas arsenicoxydans | 28 | 4.5 |
| ISApr2 | IS1595 | ISSod11 | Alpha proteobacterium | 28 | 4.5 |
| ISGur9 | IS21 | Geobacter uraniumreducens | 28 | 4.5 | |
| ISGka2 | IS110 | Geobacillus kaustophilus | 28 | 4.5 | |
| ISSac1 | IS630 | Syntrophus aciditrophicus | 28 | 4.5 | |
| ISFac3 | ISNCY | ISA1214 | Ferroplasma acidarmanus | 28 | 4.5 |
| Tn3 | Tn3 | Salmonella wien | 28 | 4.5 |
>TnAs2
Length = 8650
Score = 34.2 bits (17), Expect = 0.074
Identities = 26/29 (89%)
Strand = Plus / Plus
Query: 127 gctcaagatcgaccgctccttcatcgccg 155
|||||||||||||| |||||| ||||||
Sbjct: 4505 gctcaagatcgaccagtccttcgtcgccg 4533
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 178 cgccgccatcgccg 191
||||||||||||||
Sbjct: 2006 cgccgccatcgccg 1993
>ISAfe3
Length = 1560
Score = 34.2 bits (17), Expect = 0.074
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 195 ccatcatcgccatggcccaca 215
||||||||||| |||||||||
Sbjct: 1307 ccatcatcgccctggcccaca 1327
>ISSam1
Length = 1489
Score = 34.2 bits (17), Expect = 0.074
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 204 ccatggcccacaccctgcgca 224
||||| |||||||||||||||
Sbjct: 616 ccatgccccacaccctgcgca 636
>ISGsu1
Length = 1240
Score = 34.2 bits (17), Expect = 0.074
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 192 aaaccatcatcgccatg 208
|||||||||||||||||
Sbjct: 244 aaaccatcatcgccatg 228
>ISLke1
Length = 1599
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 66 tggatgatttcggca 80
|||||||||||||||
Sbjct: 1504 tggatgatttcggca 1518
>ISLhe13
Length = 1599
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 66 tggatgatttcggca 80
|||||||||||||||
Sbjct: 1504 tggatgatttcggca 1518
>ISButh6
Length = 1349
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 186 tcgccgaaaccatca 200
|||||||||||||||
Sbjct: 804 tcgccgaaaccatca 790
>ISRce1
Length = 1267
Score = 30.2 bits (15), Expect = 1.2
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 170 cccgacgacgccgccatcg 188
||||||| |||||||||||
Sbjct: 893 cccgacgtcgccgccatcg 911
>IS408
Length = 2798
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 175 cgacgccgccatcgc 189
|||||||||||||||
Sbjct: 763 cgacgccgccatcgc 749
>ISShdy2
Length = 2496
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 178 cgccgccatcgccg 191
||||||||||||||
Sbjct: 2047 cgccgccatcgccg 2034
>ISNje1
Length = 1597
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 164 accgaacccgacga 177
||||||||||||||
Sbjct: 276 accgaacccgacga 289
>ISMno29
Length = 1192
Score = 28.2 bits (14), Expect = 4.5
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 195 ccatcatcgccatggccc 212
||||||||||| ||||||
Sbjct: 1074 ccatcatcgccgtggccc 1091
>ISNaoc4
Length = 1568
Score = 28.2 bits (14), Expect = 4.5
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 170 cccgacgacgccgccatc 187
|||||||||||| |||||
Sbjct: 748 cccgacgacgccaccatc 765
>ISKpn23
Length = 1671
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 170 cccgacgacgccgc 183
||||||||||||||
Sbjct: 1579 cccgacgacgccgc 1592
>ISRsp13
Length = 1353
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 177 acgccgccatcgcc 190
||||||||||||||
Sbjct: 1215 acgccgccatcgcc 1202
>ISIde1
Length = 1448
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 198 tcatcgccatggcc 211
||||||||||||||
Sbjct: 1309 tcatcgccatggcc 1322
>ISBlo17
Length = 1352
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 36 gcctgcgcgacatg 49
||||||||||||||
Sbjct: 1044 gcctgcgcgacatg 1057
>ISApr14
Length = 1316
Score = 28.2 bits (14), Expect = 4.5
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 203 gccatggcccacaccctg 220
|||||||||||| |||||
Sbjct: 1220 gccatggcccactccctg 1203
>ISPa43
Length = 19903
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 130 caagatcgaccgct 143
||||||||||||||
Sbjct: 16127 caagatcgaccgct 16140
>ISPfe2
Length = 1884
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 108 agcgcttcccgatc 121
||||||||||||||
Sbjct: 919 agcgcttcccgatc 932
>ISGosp1
Length = 1642
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 186 tcgccgaaaccatc 199
||||||||||||||
Sbjct: 746 tcgccgaaaccatc 759
>ISRme16
Length = 1331
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 64 gctggatgatttcg 77
||||||||||||||
Sbjct: 132 gctggatgatttcg 145
>ISStma11
Length = 4621
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 178 cgccgccatcgccg 191
||||||||||||||
Sbjct: 2914 cgccgccatcgccg 2927
>ISStma10
Length = 1106
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 61 cgcgctggatgatt 74
||||||||||||||
Sbjct: 711 cgcgctggatgatt 724
>ISAzo15
Length = 2441
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 16 tattgtcgatcggc 29
||||||||||||||
Sbjct: 2175 tattgtcgatcggc 2162
>ISCARN34
Length = 1714
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 217 cctgcgcatccagg 230
||||||||||||||
Sbjct: 422 cctgcgcatccagg 409
>ISMysp6
Length = 1077
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 133 gatcgaccgctcct 146
||||||||||||||
Sbjct: 267 gatcgaccgctcct 280
>ISSst2
Length = 3454
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 178 cgccgccatcgccg 191
||||||||||||||
Sbjct: 1405 cgccgccatcgccg 1418
>ISHar6
Length = 1359
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 149 atcgccgacatcga 162
||||||||||||||
Sbjct: 646 atcgccgacatcga 659
>ISApr2
Length = 1029
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 179 gccgccatcgccga 192
||||||||||||||
Sbjct: 624 gccgccatcgccga 611
>ISGur9
Length = 2553
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 193 aaccatcatcgcca 206
||||||||||||||
Sbjct: 2294 aaccatcatcgcca 2307
>ISGka2
Length = 1561
Score = 28.2 bits (14), Expect = 4.5
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 188 gccgaaaccatcatcgcc 205
|||||||||||| |||||
Sbjct: 1243 gccgaaaccatcgtcgcc 1226
>ISSac1
Length = 1217
Score = 28.2 bits (14), Expect = 4.5
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 149 atcgccgacatcgaaacc 166
||||||||||| ||||||
Sbjct: 1069 atcgccgacatggaaacc 1086
>ISFac3
Length = 1270
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 77 ggcacgggctattc 90
||||||||||||||
Sbjct: 669 ggcacgggctattc 682
>Tn3
Length = 4948
Score = 28.2 bits (14), Expect = 4.5
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 56 acgctcgcgctggatgat 73
||||| ||||||||||||
Sbjct: 2777 acgctggcgctggatgat 2794
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_386_length_233_cov_0.666667_ID_5940
(233 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISSri1 | ISKra4 | ISKra4 | Streptomyces rimosus | 30 | 1.2 |
| ISAzs7 | IS66 | ISBst12 | Azospirillum sp. | 30 | 1.2 |
| ISRhsp7 | IS5 | Rhodobacter sphaeroides | 30 | 1.2 | |
| ISThsp15 | IS630 | Thiomonas sp. | 30 | 1.2 | |
| ISMav5 | IS481 | Mycobacterium avium | 30 | 1.2 | |
| ISRhsp2 | IS3 | IS2 | Rhodobacter sphaeroides | 30 | 1.2 |
| ISOgr2 | IS3 | IS2 | Oceanicola granulosus | 30 | 1.2 |
| ISNpe10 | IS200/IS605 | Natrinema pellirubrum | 28 | 4.5 | |
| ISRer3 | IS256 | Rhodococcus erythropolis | 28 | 4.5 | |
| ISAnsp12 | IS66 | Anaeromyxobacter sp. | 28 | 4.5 | |
| ISMex22 | Tn3 | Methylobacterium extorquens | 28 | 4.5 | |
| ISMex2 | IS481 | Methylobacterium extorquens | 28 | 4.5 | |
| ISMpo2 | IS1595 | ISNwi1 | Methylobacterium populi | 28 | 4.5 |
| ISPsy27 | IS1182 | Pseudomonas syringae | 28 | 4.5 | |
| ISBmu1 | IS21 | Burkholderia multivorans | 28 | 4.5 | |
| ISXc4 | Tn3 | - | Xanthomonas campestris | 28 | 4.5 |
| IS1166 | IS256 | - | Rhodococcus sp. | 28 | 4.5 |
>ISSri1
Length = 2269
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 29 caggcgccttcgaca 43
|||||||||||||||
Sbjct: 2045 caggcgccttcgaca 2031
>ISAzs7
Length = 1455
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 120 gcgccgcccgcaatc 134
|||||||||||||||
Sbjct: 499 gcgccgcccgcaatc 485
>ISRhsp7
Length = 1397
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 140 gggcggccgtcggcg 154
|||||||||||||||
Sbjct: 242 gggcggccgtcggcg 228
>ISThsp15
Length = 1482
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 113 ggcgactgcgccgcc 127
|||||||||||||||
Sbjct: 675 ggcgactgcgccgcc 689
>ISMav5
Length = 1357
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 120 gcgccgcccgcaatc 134
|||||||||||||||
Sbjct: 681 gcgccgcccgcaatc 667
>ISRhsp2
Length = 1299
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 141 ggcggccgtcggcgc 155
|||||||||||||||
Sbjct: 97 ggcggccgtcggcgc 111
>ISOgr2
Length = 1299
Score = 30.2 bits (15), Expect = 1.2
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 141 ggcggccgtcggcgc 155
|||||||||||||||
Sbjct: 97 ggcggccgtcggcgc 111
>ISNpe10
Length = 1835
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 134 caacgcgggcggcc 147
||||||||||||||
Sbjct: 755 caacgcgggcggcc 768
>ISRer3
Length = 1471
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 142 gcggccgtcggcgc 155
||||||||||||||
Sbjct: 757 gcggccgtcggcgc 744
>ISAnsp12
Length = 2926
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 147 cgtcggcgcacttc 160
||||||||||||||
Sbjct: 1470 cgtcggcgcacttc 1457
>ISMex22
Length = 3864
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 142 gcggccgtcggcgc 155
||||||||||||||
Sbjct: 48 gcggccgtcggcgc 61
>ISMex2
Length = 1031
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 79 tcgcggccccgcgg 92
||||||||||||||
Sbjct: 263 tcgcggccccgcgg 276
>ISMpo2
Length = 3089
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 108 gttgcggcgactgc 121
||||||||||||||
Sbjct: 215 gttgcggcgactgc 228
>ISPsy27
Length = 1596
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 114 gcgactgcgccgcc 127
||||||||||||||
Sbjct: 1183 gcgactgcgccgcc 1196
>ISBmu1
Length = 2581
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 117 actgcgccgcccgc 130
||||||||||||||
Sbjct: 2072 actgcgccgcccgc 2085
>ISXc4
Length = 6938
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 112 cggcgactgcgccg 125
||||||||||||||
Sbjct: 366 cggcgactgcgccg 379
>IS1166
Length = 1469
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 142 gcggccgtcggcgc 155
||||||||||||||
Sbjct: 756 gcggccgtcggcgc 743
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_387_length_232_cov_0.941935_ID_5942
(232 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISAzo21 | IS66 | Azoarcus sp. | 36 | 0.019 | |
| ISAzo19 | IS66 | Azoarcus sp. | 36 | 0.019 | |
| ISRpa1 | IS1595 | ISNwi1 | Rhodopseudomonas palustris | 30 | 1.1 |
| TnAs3 | Tn3 | Aeromonas salmonicida | 28 | 4.5 | |
| ISAba19 | IS3 | IS51 | Acinetobacter baumannii | 28 | 4.5 |
| ISAzs15 | ISAs1 | Azospirillum sp. | 28 | 4.5 | |
| ISAar40 | IS3 | IS3 | Arthrobacter arilaitensis | 28 | 4.5 |
| ISAar35 | IS481 | Arthrobacter arilaitensis | 28 | 4.5 | |
| ISAar15 | ISL3 | Arthrobacter arilaitensis | 28 | 4.5 | |
| ISCARN91 | IS110 | IS1111 | Metagenomic data from CARNOULES | 28 | 4.5 |
| ISThsp3 | IS66 | Thiomonas sp. | 28 | 4.5 | |
| ISCausp2 | IS1595 | ISNha5 | Caulobacter sp. | 28 | 4.5 |
| ISAzvi10 | IS701 | Azotobacter vinelandii | 28 | 4.5 | |
| ISAba2 | IS3 | IS51 | Acinetobacter baumannii | 28 | 4.5 |
>ISAzo21
Length = 2423
Score = 36.2 bits (18), Expect = 0.019
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 62 gtgctggcggtagaccggctgg 83
|||||||||||||| |||||||
Sbjct: 1423 gtgctggcggtagagcggctgg 1402
>ISAzo19
Length = 2423
Score = 36.2 bits (18), Expect = 0.019
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 62 gtgctggcggtagaccggctgg 83
|||||||||||||| |||||||
Sbjct: 1423 gtgctggcggtagagcggctgg 1402
>ISRpa1
Length = 2091
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 100 gctggcggaattgtc 114
|||||||||||||||
Sbjct: 459 gctggcggaattgtc 473
>TnAs3
Length = 18735
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 169 gaaccctatcgacc 182
||||||||||||||
Sbjct: 681 gaaccctatcgacc 694
>ISAba19
Length = 1309
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 175 tatcgacctgaact 188
||||||||||||||
Sbjct: 564 tatcgacctgaact 551
>ISAzs15
Length = 1263
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 190 cgatgcctcgccgg 203
||||||||||||||
Sbjct: 324 cgatgcctcgccgg 311
>ISAar40
Length = 1347
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 128 gatgccctggcgca 141
||||||||||||||
Sbjct: 669 gatgccctggcgca 656
>ISAar35
Length = 1072
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 49 ggtagggccgggtg 62
||||||||||||||
Sbjct: 871 ggtagggccgggtg 858
>ISAar15
Length = 1418
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 82 ggcggacctgggtg 95
||||||||||||||
Sbjct: 919 ggcggacctgggtg 906
>ISCARN91
Length = 1432
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 137 gcgcaattgttgcc 150
||||||||||||||
Sbjct: 766 gcgcaattgttgcc 779
>ISThsp3
Length = 2455
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 205 gctgtatgcccagg 218
||||||||||||||
Sbjct: 1814 gctgtatgcccagg 1827
>ISCausp2
Length = 7915
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 198 cgccggagctgtat 211
||||||||||||||
Sbjct: 3792 cgccggagctgtat 3779
>ISAzvi10
Length = 1431
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 79 gctggcggacctgg 92
||||||||||||||
Sbjct: 905 gctggcggacctgg 918
>ISAba2
Length = 1308
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 175 tatcgacctgaact 188
||||||||||||||
Sbjct: 564 tatcgacctgaact 551
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_388_length_232_cov_0.941935_ID_5944
(232 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISPsy30 | Tn3 | Pseudomonas syringae | 32 | 0.29 | |
| IS1553 | IS256 | Mycobacterium tuberculosis | 32 | 0.29 | |
| ISMysp6 | IS481 | Mycobacterium sp. | 30 | 1.1 | |
| ISPa42 | Tn3 | Pseudomonas aeruginosa | 30 | 1.1 | |
| ISBj7 | IS6 | Bradyrhizobium japonicum | 28 | 4.5 | |
| ISMrh1 | IS256 | Mycobacterium rhodesiae | 28 | 4.5 | |
| ISPfe1 | IS3 | IS407 | Paracoccus ferrooxidans | 28 | 4.5 |
| ISAzs34 | ISNCY | IS892 | Azospirillum sp. | 28 | 4.5 |
| ISStsp9 | IS5 | IS427 | Streptomyces sp. | 28 | 4.5 |
| ISShsa1 | IS5 | IS5 | Shuttleworthia satelles | 28 | 4.5 |
| IS693 | IS66 | Rhizobium sp. | 28 | 4.5 | |
| ISMsi1 | IS21 | Methylocella silvestris | 28 | 4.5 | |
| ISAfe9 | IS21 | Acidithiobacillus ferrooxidans | 28 | 4.5 | |
| ISCku7 | IS66 | ISBst12 | Candidatus Kuenenia stuttgartiensis | 28 | 4.5 |
| ISSce1 | IS1 | ISMhu11 | Sorangium cellulosum | 28 | 4.5 |
| ISOba2 | IS3 | IS407 | Oceanicola batsensis | 28 | 4.5 |
| ISRssp1 | IS3 | IS407 | Roseovarius sp. | 28 | 4.5 |
| ISBvi4 | IS3 | IS3 | Burkholderia vietnamiensis | 28 | 4.5 |
| ISSs1 | IS200/IS605 | IS1341 | Synechococcus sp. | 28 | 4.5 |
>ISPsy30
Length = 5167
Score = 32.2 bits (16), Expect = 0.29
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 71 tgcccaagctgcggca 86
||||||||||||||||
Sbjct: 2497 tgcccaagctgcggca 2482
>IS1553
Length = 1406
Score = 32.2 bits (16), Expect = 0.29
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 63 cgcccacgtgcccaag 78
||||||||||||||||
Sbjct: 913 cgcccacgtgcccaag 928
>ISMysp6
Length = 1077
Score = 30.2 bits (15), Expect = 1.1
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 181 cgccgccgcgcgtgcgccc 199
||||||||||| |||||||
Sbjct: 966 cgccgccgcgcttgcgccc 984
>ISPa42
Length = 16941
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 71 tgcccaagctgcggc 85
|||||||||||||||
Sbjct: 898 tgcccaagctgcggc 912
>ISBj7
Length = 824
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 180 acgccgccgcgcgt 193
||||||||||||||
Sbjct: 441 acgccgccgcgcgt 454
>ISMrh1
Length = 1472
Score = 28.2 bits (14), Expect = 4.5
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 84 gcaaaaagctcgtcgccc 101
||||| ||||||||||||
Sbjct: 757 gcaaagagctcgtcgccc 774
>ISPfe1
Length = 1248
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 150 gcaagggcatgatc 163
||||||||||||||
Sbjct: 543 gcaagggcatgatc 556
>ISAzs34
Length = 1650
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 190 gcgtgcgcccgcca 203
||||||||||||||
Sbjct: 239 gcgtgcgcccgcca 252
>ISStsp9
Length = 956
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 26 cggctgctcgcgct 39
||||||||||||||
Sbjct: 340 cggctgctcgcgct 353
>ISShsa1
Length = 1613
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 205 ggagatgtcctgat 218
||||||||||||||
Sbjct: 1144 ggagatgtcctgat 1157
>IS693
Length = 3078
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 185 gccgcgcgtgcgcc 198
||||||||||||||
Sbjct: 1247 gccgcgcgtgcgcc 1260
>ISMsi1
Length = 2307
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 176 agcgacgccgccgc 189
||||||||||||||
Sbjct: 2214 agcgacgccgccgc 2227
>ISAfe9
Length = 2503
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 117 ggccgctgtggggc 130
||||||||||||||
Sbjct: 1965 ggccgctgtggggc 1978
>ISCku7
Length = 2368
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 219 gacaaagaccttgg 232
||||||||||||||
Sbjct: 372 gacaaagaccttgg 359
>ISSce1
Length = 4601
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 195 cgcccgccatggag 208
||||||||||||||
Sbjct: 989 cgcccgccatggag 1002
>ISOba2
Length = 1253
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 150 gcaagggcatgatc 163
||||||||||||||
Sbjct: 542 gcaagggcatgatc 555
>ISRssp1
Length = 1253
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 150 gcaagggcatgatc 163
||||||||||||||
Sbjct: 542 gcaagggcatgatc 555
>ISBvi4
Length = 1268
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 108 gcaagcgcgggccg 121
||||||||||||||
Sbjct: 457 gcaagcgcgggccg 470
>ISSs1
Length = 1481
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 84 gcaaaaagctcgtc 97
||||||||||||||
Sbjct: 917 gcaaaaagctcgtc 930
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_389_length_232_cov_0.941935_ID_5946
(232 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISHmu8 | IS200/IS605 | IS1341 | Halomicrobium mukohataei | 36 | 0.019 |
| ISAzs34 | ISNCY | IS892 | Azospirillum sp. | 32 | 0.29 |
| ISGpo1 | IS256 | Gordonia polyisoprenivorans | 30 | 1.1 | |
| ISNph21 | IS200/IS605 | IS1341 | Natronomonas pharaonis | 30 | 1.1 |
| ISMau1 | IS5 | ISL2 | Micromonospora aurantiaca | 30 | 1.1 |
| ISSar1 | IS5 | ISL2 | Salinispora arenicola | 30 | 1.1 |
| ISGeob1 | IS5 | ISL2 | Geodermatophilus obscurus | 30 | 1.1 |
| ISAcma26 | IS21 | Acaryochloris marina | 30 | 1.1 | |
| ISCARN40 | IS256 | Metagenomic data from CARNOULES | 30 | 1.1 | |
| ISDge2 | IS1 | Deinococcus geothermalis | 30 | 1.1 | |
| ISOcsp1 | IS21 | Ochrobactrum sp. | 30 | 1.1 | |
| ISSsp126 | IS5 | IS5 | Sphingomonas sp. | 30 | 1.1 |
| IS1535 | IS607 | Mycobacterium tuberculosis | 30 | 1.1 | |
| ISPa46 | IS256 | Pseudomonas aeruginosa | 28 | 4.5 | |
| ISAzs29 | Tn3 | Azospirillum sp. | 28 | 4.5 | |
| ISAzs20 | IS66 | Azospirillum sp. | 28 | 4.5 | |
| ISSro1 | IS5 | ISL2 | Streptomyces roseosporus | 28 | 4.5 |
| ISMno7 | IS110 | Methylobacterium nodulans | 28 | 4.5 | |
| ISArsp3 | IS110 | Arthrobacter sp. | 28 | 4.5 | |
| ISMsm12 | IS1380 | Mycobacterium smegmatis | 28 | 4.5 | |
| ISMdi7 | IS21 | Methylobacterium dichloromethanicum | 28 | 4.5 | |
| ISRce1 | ISAs1 | Rhodospirillum centenum | 28 | 4.5 | |
| ISCARN63 | ISNCY | IS1202 | Metagenomic data from CARNOULES | 28 | 4.5 |
| ISGdi12 | IS701 | Gluconacetobacter diazotrophicus | 28 | 4.5 | |
| ISUnCu3 | IS21 | Uncultured bacterium | 28 | 4.5 | |
| ISSsp5 | IS21 | Sphingomonas sp. | 28 | 4.5 | |
| ISPsy27 | IS1182 | Pseudomonas syringae | 28 | 4.5 | |
| ISPsy28 | IS3 | IS3 | Pseudomonas syringae | 28 | 4.5 |
| ISLxx3 | IS21 | Leifsonia xyli | 28 | 4.5 | |
| ISPpu7 | IS21 | - | Pseudomonas putida | 28 | 4.5 |
| IS470 | IS5 | ISL2 | Streptomyces coelicolor | 28 | 4.5 |
| IS220 | IS1380 | - | Mycobacterium fortuitum | 28 | 4.5 |
| IS1490 | IS256 | - | Burkholderia cepacia | 28 | 4.5 |
| IS1164 | IS256 | - | Rhodococcus rhodochrous | 28 | 4.5 |
>ISHmu8
Length = 1508
Score = 36.2 bits (18), Expect = 0.019
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 82 gcggcgtcgaacggctca 99
||||||||||||||||||
Sbjct: 477 gcggcgtcgaacggctca 494
>ISAzs34
Length = 1650
Score = 32.2 bits (16), Expect = 0.29
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 166 tgagcgacggccagca 181
||||||||||||||||
Sbjct: 690 tgagcgacggccagca 705
>ISGpo1
Length = 1432
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 162 gcgctgagcgacggc 176
|||||||||||||||
Sbjct: 749 gcgctgagcgacggc 763
>ISNph21
Length = 1518
Score = 30.2 bits (15), Expect = 1.1
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 82 gcggcgtcgaacggctcaa 100
||||||||||||| |||||
Sbjct: 484 gcggcgtcgaacgtctcaa 502
>ISMau1
Length = 914
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 205 tgcaggtcatcgccg 219
|||||||||||||||
Sbjct: 512 tgcaggtcatcgccg 526
>ISSar1
Length = 914
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 205 tgcaggtcatcgccg 219
|||||||||||||||
Sbjct: 512 tgcaggtcatcgccg 526
>ISGeob1
Length = 1020
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 205 tgcaggtcatcgccg 219
|||||||||||||||
Sbjct: 581 tgcaggtcatcgccg 595
>ISAcma26
Length = 2669
Score = 30.2 bits (15), Expect = 1.1
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 120 gtttatggaccggcggccg 138
|||| ||||||||||||||
Sbjct: 852 gtttttggaccggcggccg 834
>ISCARN40
Length = 1264
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 154 gcgacgaggcgctga 168
|||||||||||||||
Sbjct: 1092 gcgacgaggcgctga 1106
>ISDge2
Length = 748
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 86 cgtcgaacggctcaa 100
|||||||||||||||
Sbjct: 600 cgtcgaacggctcaa 614
>ISOcsp1
Length = 1955
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 9 aagtggctgcgcgac 23
|||||||||||||||
Sbjct: 897 aagtggctgcgcgac 911
>ISSsp126
Length = 1293
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 157 acgaggcgctgagcg 171
|||||||||||||||
Sbjct: 116 acgaggcgctgagcg 130
>IS1535
Length = 2300
Score = 30.2 bits (15), Expect = 1.1
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 133 cggccgagaacattcccgc 151
||||||||||| |||||||
Sbjct: 1623 cggccgagaactttcccgc 1641
>ISPa46
Length = 1329
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 154 gcgacgaggcgctg 167
||||||||||||||
Sbjct: 1156 gcgacgaggcgctg 1169
>ISAzs29
Length = 3897
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 155 cgacgaggcgctga 168
||||||||||||||
Sbjct: 3278 cgacgaggcgctga 3291
>ISAzs20
Length = 2811
Score = 28.2 bits (14), Expect = 4.5
Identities = 20/22 (90%)
Strand = Plus / Plus
Query: 133 cggccgagaacattcccgcgcg 154
|||||||| ||||||||||||
Sbjct: 1347 cggccgagcgcattcccgcgcg 1368
>ISSro1
Length = 897
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 205 tgcaggtcatcgcc 218
||||||||||||||
Sbjct: 512 tgcaggtcatcgcc 525
>ISMno7
Length = 1147
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 124 atggaccggcggcc 137
||||||||||||||
Sbjct: 913 atggaccggcggcc 900
>ISArsp3
Length = 1596
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 62 ccaccatcacgacc 75
||||||||||||||
Sbjct: 396 ccaccatcacgacc 409
>ISMsm12
Length = 3256
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 78 gtcggcggcgtcga 91
||||||||||||||
Sbjct: 2772 gtcggcggcgtcga 2759
>ISMdi7
Length = 2568
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 26 ctcggactggcagc 39
||||||||||||||
Sbjct: 1982 ctcggactggcagc 1995
>ISRce1
Length = 1267
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 131 ggcggccgagaaca 144
||||||||||||||
Sbjct: 385 ggcggccgagaaca 372
>ISCARN63
Length = 1387
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 108 accggcgcgcgcgt 121
||||||||||||||
Sbjct: 1113 accggcgcgcgcgt 1126
>ISGdi12
Length = 1419
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 217 ccgtccctggccac 230
||||||||||||||
Sbjct: 608 ccgtccctggccac 621
>ISUnCu3
Length = 2596
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 10 agtggctgcgcgac 23
||||||||||||||
Sbjct: 2016 agtggctgcgcgac 2029
>ISSsp5
Length = 2501
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 26 ctcggactggcagc 39
||||||||||||||
Sbjct: 1977 ctcggactggcagc 1990
>ISPsy27
Length = 1596
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 209 ggtcatcgccgtcc 222
||||||||||||||
Sbjct: 888 ggtcatcgccgtcc 875
>ISPsy28
Length = 1291
Score = 28.2 bits (14), Expect = 4.5
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 211 tcatcgccgtccctggcc 228
||||||||||| ||||||
Sbjct: 381 tcatcgccgtctctggcc 398
>ISLxx3
Length = 2637
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 71 cgaccacgtcggcg 84
||||||||||||||
Sbjct: 1493 cgaccacgtcggcg 1480
>ISPpu7
Length = 2598
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 10 agtggctgcgcgac 23
||||||||||||||
Sbjct: 2017 agtggctgcgcgac 2030
>IS470
Length = 1010
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 205 tgcaggtcatcgcc 218
||||||||||||||
Sbjct: 567 tgcaggtcatcgcc 580
>IS220
Length = 3257
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 78 gtcggcggcgtcga 91
||||||||||||||
Sbjct: 2773 gtcggcggcgtcga 2760
>IS1490
Length = 1433
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 158 cgaggcgctgagcg 171
||||||||||||||
Sbjct: 498 cgaggcgctgagcg 511
>IS1164
Length = 1430
Score = 28.2 bits (14), Expect = 4.5
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 77 cgtcggcggcgtcgaacg 94
||||||||||| ||||||
Sbjct: 632 cgtcggcggcgacgaacg 615
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_390_length_232_cov_0.941935_ID_5948
(232 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISMno13 | IS66 | Methylobacterium nodulans | 44 | 8e-05 | |
| ISSav5 | IS481 | Streptomyces avermitilis | 36 | 0.019 | |
| ISXau4 | IS66 | Xanthobacter autotrophicus | 36 | 0.019 | |
| ISAzca2 | IS66 | Azorhizobium caulinodans | 36 | 0.019 | |
| IS1245 | IS256 | - | Mycobacterium avium | 34 | 0.073 |
| ISMav9 | ISNCY | ISDol1 | Mycobacterium avium | 30 | 1.1 |
| TnAs3 | Tn3 | Aeromonas salmonicida | 30 | 1.1 | |
| ISAcr4 | IS1380 | Acidiphilium cryptum | 30 | 1.1 | |
| ISDka1 | IS607 | Desulfurococcus kamchatkensis | 30 | 1.1 | |
| ISApr6 | IS66 | Alpha proteobacterium | 30 | 1.1 | |
| ISRme13 | IS3 | IS3 | Ralstonia metallidurans | 30 | 1.1 |
| ISAeme17 | IS21 | Aeromonas media | 28 | 4.5 | |
| ISHamu1 | IS200/IS605 | IS1341 | Haloferax mucosum | 28 | 4.5 |
| TnAs2 | Tn3 | Aeromonas salmonicida | 28 | 4.5 | |
| ISNisp4 | IS256 | Nitrobacter sp. | 28 | 4.5 | |
| ISNpe6 | IS1595 | ISH4 | Natrinema pellirubrum | 28 | 4.5 |
| ISGte1 | IS256 | Gordonia terrae | 28 | 4.5 | |
| ISNph21 | IS200/IS605 | IS1341 | Natronomonas pharaonis | 28 | 4.5 |
| ISStsp7 | IS5 | ISL2 | Streptomyces sp | 28 | 4.5 |
| ISAmi1 | IS5 | ISL2 | Actinosynnema mirum | 28 | 4.5 |
| ISRjo3 | ISNCY | ISDol1 | Rhodococcus jostii | 28 | 4.5 |
| ISRxy1 | IS1182 | Rubrobacter xylanophilus | 28 | 4.5 | |
| ISMno23 | IS91 | Methylobacterium nodulans | 28 | 4.5 | |
| ISMno10 | IS1182 | Methylobacterium nodulans | 28 | 4.5 | |
| ISMpo7 | IS5 | IS427 | Methylobacterium populi | 28 | 4.5 |
| ISPfr15 | IS481 | Propionibacterium freudenreichii | 28 | 4.5 | |
| ISTro1 | IS1380 | Thiocapsa roseopersicina | 28 | 4.5 | |
| ISMex10 | ISL3 | Methylobacterium extorquens | 28 | 4.5 | |
| ISAcma20 | IS5 | IS1031 | Acaryochloris marina | 28 | 4.5 |
| ISCARN112 | ISNCY | IS1202 | Metagenomic data from CARNOULES | 28 | 4.5 |
| ISCARN21 | IS630 | Metagenomic data from CARNOULES | 28 | 4.5 | |
| ISThsp2 | IS21 | Thiomonas sp. | 28 | 4.5 | |
| ISAnsp1 | IS1182 | Anaeromyxobacter sp. | 28 | 4.5 | |
| ISUnCu3 | IS21 | Uncultured bacterium | 28 | 4.5 | |
| ISMsm8 | IS30 | Mycobacterium smegmatis | 28 | 4.5 | |
| ISMca3 | IS3 | IS51 | Methylococcus capsulatus | 28 | 4.5 |
| ISFsp5 | IS4 | IS4 | Frankia sp. | 28 | 4.5 |
| ISRtr3 | IS5 | IS1031 | Rhizobium tropici | 28 | 4.5 |
| ISRm4-3 | IS5 | IS1031 | Sinorhizobium meliloti | 28 | 4.5 |
| ISRm4-1 | IS5 | IS1031 | Rhizobium meliloti | 28 | 4.5 |
| ISRm4 | IS5 | IS1031 | Rhizobium meliloti | 28 | 4.5 |
| ISRm15 | IS5 | IS1031 | Sinorhizobium meliloti | 28 | 4.5 |
| IS1416 | IS3 | IS51 | Burkholderia glumae | 28 | 4.5 |
| IS1356 | IS256 | - | Burkholderia cepacia | 28 | 4.5 |
>ISMno13
Length = 2459
Score = 44.1 bits (22), Expect = 8e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 138 tgcgccagatcatcaaggcgat 159
||||||||||||||||||||||
Sbjct: 1014 tgcgccagatcatcaaggcgat 1035
Score = 32.2 bits (16), Expect = 0.29
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 9 gcgtgctgcaggtcga 24
||||||||||||||||
Sbjct: 1818 gcgtgctgcaggtcga 1833
>ISSav5
Length = 1953
Score = 36.2 bits (18), Expect = 0.019
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 83 gaggtggaggcggtggtc 100
||||||||||||||||||
Sbjct: 316 gaggtggaggcggtggtc 333
>ISXau4
Length = 2458
Score = 36.2 bits (18), Expect = 0.019
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 138 tgcgccagatcatcaagg 155
||||||||||||||||||
Sbjct: 998 tgcgccagatcatcaagg 1015
>ISAzca2
Length = 2458
Score = 36.2 bits (18), Expect = 0.019
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 138 tgcgccagatcatcaagg 155
||||||||||||||||||
Sbjct: 998 tgcgccagatcatcaagg 1015
>IS1245
Length = 1414
Score = 34.2 bits (17), Expect = 0.073
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 90 aggcggtggtcatcgcc 106
|||||||||||||||||
Sbjct: 660 aggcggtggtcatcgcc 676
>ISMav9
Length = 1572
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 20 gtcgacggcgtgatc 34
|||||||||||||||
Sbjct: 1074 gtcgacggcgtgatc 1088
>TnAs3
Length = 18735
Score = 30.2 bits (15), Expect = 1.1
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 25 cggcgtgatcggcccggcc 43
|||| ||||||||||||||
Sbjct: 1454 cggcatgatcggcccggcc 1472
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 203 ggcgcgcgcgccgcc 217
|||||||||||||||
Sbjct: 12219 ggcgcgcgcgccgcc 12233
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 203 ggcgcgcgcgccgc 216
||||||||||||||
Sbjct: 12230 ggcgcgcgcgccgc 12217
>ISAcr4
Length = 1618
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 32 atcggcccggcctcg 46
|||||||||||||||
Sbjct: 1040 atcggcccggcctcg 1026
>ISDka1
Length = 1999
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 76 tgtgggcgaggtgga 90
|||||||||||||||
Sbjct: 1922 tgtgggcgaggtgga 1936
>ISApr6
Length = 2479
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 14 ctgcaggtcgacggc 28
|||||||||||||||
Sbjct: 1849 ctgcaggtcgacggc 1863
>ISRme13
Length = 1288
Score = 30.2 bits (15), Expect = 1.1
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 148 catcaaggcgattctcgcc 166
|||||||||||||| ||||
Sbjct: 519 catcaaggcgattcacgcc 537
>ISAeme17
Length = 1941
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 61 gcaaggtctggcgg 74
||||||||||||||
Sbjct: 1280 gcaaggtctggcgg 1267
>ISHamu1
Length = 1475
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 48 cggacttcatcctg 61
||||||||||||||
Sbjct: 583 cggacttcatcctg 596
>TnAs2
Length = 8650
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 148 catcaaggcgattc 161
||||||||||||||
Sbjct: 8065 catcaaggcgattc 8078
>ISNisp4
Length = 1418
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 30 tgatcggcccggcc 43
||||||||||||||
Sbjct: 1381 tgatcggcccggcc 1394
>ISNpe6
Length = 1004
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 128 gacacctcgatgcg 141
||||||||||||||
Sbjct: 868 gacacctcgatgcg 855
>ISGte1
Length = 1503
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 34 cggcccggcctcgg 47
||||||||||||||
Sbjct: 381 cggcccggcctcgg 368
>ISNph21
Length = 1518
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 38 ccggcctcggcgga 51
||||||||||||||
Sbjct: 44 ccggcctcggcgga 57
>ISStsp7
Length = 976
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 38 ccggcctcggcgga 51
||||||||||||||
Sbjct: 270 ccggcctcggcgga 257
>ISAmi1
Length = 883
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 135 cgatgcgccagatc 148
||||||||||||||
Sbjct: 257 cgatgcgccagatc 270
>ISRjo3
Length = 1638
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 22 cgacggcgtgatcg 35
||||||||||||||
Sbjct: 1126 cgacggcgtgatcg 1139
>ISRxy1
Length = 1790
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 36 gcccggcctcggcg 49
||||||||||||||
Sbjct: 1184 gcccggcctcggcg 1171
>ISMno23
Length = 2271
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 28 cgtgatcggcccgg 41
||||||||||||||
Sbjct: 42 cgtgatcggcccgg 55
>ISMno10
Length = 1749
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 10 cgtgctgcaggtcg 23
||||||||||||||
Sbjct: 706 cgtgctgcaggtcg 719
>ISMpo7
Length = 848
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 132 cctcgatgcgccag 145
||||||||||||||
Sbjct: 722 cctcgatgcgccag 709
>ISPfr15
Length = 1097
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 20 gtcgacggcgtgat 33
||||||||||||||
Sbjct: 685 gtcgacggcgtgat 672
>ISTro1
Length = 1735
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 97 ggtcatcgccctcg 110
||||||||||||||
Sbjct: 1655 ggtcatcgccctcg 1668
>ISMex10
Length = 1754
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 7 gcgcgtgctgcagg 20
||||||||||||||
Sbjct: 1392 gcgcgtgctgcagg 1405
>ISAcma20
Length = 867
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 143 cagatcatcaaggc 156
||||||||||||||
Sbjct: 524 cagatcatcaaggc 537
>ISCARN112
Length = 1468
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 57 tcctgcaaggtctg 70
||||||||||||||
Sbjct: 874 tcctgcaaggtctg 861
>ISCARN21
Length = 1249
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 212 gccgccagtgccgg 225
||||||||||||||
Sbjct: 747 gccgccagtgccgg 760
>ISThsp2
Length = 2644
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 90 aggcggtggtcatc 103
||||||||||||||
Sbjct: 2280 aggcggtggtcatc 2267
>ISAnsp1
Length = 1520
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 163 cgcctcgccggtgc 176
||||||||||||||
Sbjct: 983 cgcctcgccggtgc 970
>ISUnCu3
Length = 2596
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 25 cggcgtgatcggcc 38
||||||||||||||
Sbjct: 1451 cggcgtgatcggcc 1464
>ISMsm8
Length = 1457
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 36 gcccggcctcggcg 49
||||||||||||||
Sbjct: 806 gcccggcctcggcg 793
>ISMca3
Length = 1320
Score = 28.2 bits (14), Expect = 4.5
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 59 ctgcaaggtctggcggat 76
||||||||||| ||||||
Sbjct: 423 ctgcaaggtcttgcggat 440
>ISFsp5
Length = 1617
Score = 28.2 bits (14), Expect = 4.5
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 159 ttctcgcctcgccggtgc 176
|||||||||||| |||||
Sbjct: 1218 ttctcgcctcgctggtgc 1201
>ISRtr3
Length = 931
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 71 gcggatgtgggcga 84
||||||||||||||
Sbjct: 872 gcggatgtgggcga 859
>ISRm4-3
Length = 934
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 71 gcggatgtgggcga 84
||||||||||||||
Sbjct: 875 gcggatgtgggcga 862
>ISRm4-1
Length = 937
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 71 gcggatgtgggcga 84
||||||||||||||
Sbjct: 878 gcggatgtgggcga 865
>ISRm4
Length = 933
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 71 gcggatgtgggcga 84
||||||||||||||
Sbjct: 874 gcggatgtgggcga 861
>ISRm15
Length = 934
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 71 gcggatgtgggcga 84
||||||||||||||
Sbjct: 875 gcggatgtgggcga 862
>IS1416
Length = 1322
Score = 28.2 bits (14), Expect = 4.5
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 59 ctgcaaggtctggcggat 76
||||||||||| ||||||
Sbjct: 424 ctgcaaggtcttgcggat 441
>IS1356
Length = 1354
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 144 agatcatcaaggcg 157
||||||||||||||
Sbjct: 1147 agatcatcaaggcg 1160
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_391_length_232_cov_0.935484_ID_5950
(232 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISSpu5 | IS21 | Shewanella putrefaciens | 460 | e-130 | |
| IS1491 | IS21 | - | Pseudomonas alcaligenes | 141 | 4e-34 |
| ISUnCu3 | IS21 | Uncultured bacterium | 125 | 3e-29 | |
| ISPpu7 | IS21 | - | Pseudomonas putida | 125 | 3e-29 |
| ISPre4 | IS21 | Pseudomonas resinovorans | 58 | 5e-09 | |
| ISPsy14 | IS21 | Pseudomonas syringae | 56 | 2e-08 | |
| ISCARN4 | IS21 | Metagenomic data from CARNOULES | 36 | 0.019 | |
| ISCARN78 | IS21 | Metagenomic data from CARNOULES | 34 | 0.073 | |
| ISBf7 | IS1380 | IS942 | Bacteroides fragilis | 34 | 0.073 |
| ISAtc1 | ISL3 | Acidithiobacillus caldus | 32 | 0.29 | |
| ISSysp8 | ISKra4 | ISMich2 | Synechococcus sp. | 30 | 1.1 |
| ISLdr1 | ISKra4 | ISKra4 | Legionella drancourtii | 30 | 1.1 |
| ISRel16 | IS21 | Rhizobium etli | 30 | 1.1 | |
| ISAfe11 | IS607 | Acidithiobacillus ferrooxidans | 30 | 1.1 | |
| ISXc8 | IS3 | IS3 | Xanthomonas campestris | 30 | 1.1 |
| ISRhosp1 | IS3 | IS3 | Rhodococcus sp. | 30 | 1.1 |
| ISRsp2 | IS21 | - | Rhizobium sp. | 30 | 1.1 |
| IS71 | IS66 | - | Agrobacterium tumefaciens | 30 | 1.1 |
| ISHwa27 | IS200/IS605 | Haloquadratum walsbyi | 28 | 4.5 | |
| ISAs28 | IS21 | Aeromonas salmonicida | 28 | 4.5 | |
| ISAs27 | IS21 | Aeromonas salmonicida | 28 | 4.5 | |
| ISKpn27 | IS481 | Klebsiella pneumoniae | 28 | 4.5 | |
| ISShes11 | Tn3 | Shewanella sp. | 28 | 4.5 | |
| ISAzo2 | IS1182 | Azoarcus sp. | 28 | 4.5 | |
| ISAzo1 | IS1182 | Azoarcus sp. | 28 | 4.5 | |
| ISMex38 | Tn3 | Methylobacterium extorquens | 28 | 4.5 | |
| ISVch3 | IS21 | Vibrio cholerae | 28 | 4.5 | |
| ISLxc1 | IS21 | Leifsonia xyli | 28 | 4.5 | |
| ISAzvi5 | IS4 | IS10 | Azotobacter vinelandii | 28 | 4.5 |
| IS866 | IS66 | - | Agrobacterium tumefaciens | 28 | 4.5 |
>ISSpu5
Length = 2556
Score = 460 bits (232), Expect = e-130
Identities = 232/232 (100%)
Strand = Plus / Plus
Query: 1 ggtccgaggcattccagactggcagcggatccacgatgagctccggggcaagaacgtcac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 ggtccgaggcattccagactggcagcggatccacgatgagctccggggcaagaacgtcac 455
Query: 61 cctgttcctgctctggcaggagtaccgggaagccaatccggatggctaccagtacagctg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 cctgttcctgctctggcaggagtaccgggaagccaatccggatggctaccagtacagctg 515
Query: 121 gttctgcgagcactaccgggcctggcagggcaagctggatctggtgatgcgtcaggacca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 gttctgcgagcactaccgggcctggcagggcaagctggatctggtgatgcgtcaggacca 575
Query: 181 ccgagccggtgaaaagctgttcgtggactatgctgggcacacggtgcccgtc 232
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 ccgagccggtgaaaagctgttcgtggactatgctgggcacacggtgcccgtc 627
>IS1491
Length = 2481
Score = 141 bits (71), Expect = 4e-34
Identities = 107/119 (89%)
Strand = Plus / Plus
Query: 110 cagtacagctggttctgcgagcactaccgggcctggcagggcaagctggatctggtgatg 169
||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct: 450 cagtacagctggttctgtgagcactaccgggcctggcagggcaagctggacgtggtgatg 509
Query: 170 cgtcaggaccaccgagccggtgaaaagctgttcgtggactatgctgggcacacggtgcc 228
|||||||| ||||| | ||| || ||||||||||| |||||||| || || ||||||||
Sbjct: 510 cgtcaggagcaccgcgtcggcgagaagctgttcgtcgactatgccggccagacggtgcc 568
>ISUnCu3
Length = 2596
Score = 125 bits (63), Expect = 3e-29
Identities = 105/119 (88%)
Strand = Plus / Plus
Query: 110 cagtacagctggttctgcgagcactaccgggcctggcagggcaagctggatctggtgatg 169
||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||
Sbjct: 519 cagtacagctggttctgtgagcactaccgagcctggcagggcaagctggacgtggtgatg 578
Query: 170 cgtcaggaccaccgagccggtgaaaagctgttcgtggactatgctgggcacacggtgcc 228
|||||||| ||||| | ||| || || |||||||| ||||| || ||||| ||||||||
Sbjct: 579 cgtcaggagcaccgcgtcggcgagaaactgttcgtcgactacgccgggcagacggtgcc 637
>ISPpu7
Length = 2598
Score = 125 bits (63), Expect = 3e-29
Identities = 105/119 (88%)
Strand = Plus / Plus
Query: 110 cagtacagctggttctgcgagcactaccgggcctggcagggcaagctggatctggtgatg 169
||||||||||||||||| ||||||||||| ||||||||||||||| |||| ||||||||
Sbjct: 520 cagtacagctggttctgtgagcactaccgagcctggcagggcaagttggacgtggtgatg 579
Query: 170 cgtcaggaccaccgagccggtgaaaagctgttcgtggactatgctgggcacacggtgcc 228
|||||||| ||||| | ||| || ||||||||||| |||||||| || || ||||||||
Sbjct: 580 cgtcaggagcaccgcgtcggcgagaagctgttcgtcgactatgccggccagacggtgcc 638
Score = 40.1 bits (20), Expect = 0.001
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 68 ctgctctggcaggagtaccg 87
||||||||||||||||||||
Sbjct: 478 ctgctctggcaggagtaccg 497
>ISPre4
Length = 2575
Score = 58.0 bits (29), Expect = 5e-09
Identities = 83/101 (82%)
Strand = Plus / Plus
Query: 104 ggctaccagtacagctggttctgcgagcactaccgggcctggcagggcaagctggatctg 163
|||| ||| |||||||||||||||||||||||||| |||| | |||| | || ||
Sbjct: 490 ggcttccaatacagctggttctgcgagcactaccgcctctgggccgccaaggtcgacgtg 549
Query: 164 gtgatgcgtcaggaccaccgagccggtgaaaagctgttcgt 204
|| ||||| ||||| ||||| ||||| ||||||||||||||
Sbjct: 550 gtcatgcgccaggagcaccgtgccggcgaaaagctgttcgt 590
>ISPsy14
Length = 2597
Score = 56.0 bits (28), Expect = 2e-08
Identities = 76/92 (82%)
Strand = Plus / Plus
Query: 113 tacagctggttctgcgagcactaccgggcctggcagggcaagctggatctggtgatgcgt 172
|||||||||||||||||||||||||| |||| | |||| | || |||| ||||||
Sbjct: 521 tacagctggttctgcgagcactaccgcctctgggccgccaaggtcgacgtggtcatgcgt 580
Query: 173 caggaccaccgagccggtgaaaagctgttcgt 204
||||| ||||| || || ||||||||||||||
Sbjct: 581 caggaacaccgtgctggcgaaaagctgttcgt 612
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 67 cctgctctggcagga 81
|||||||||||||||
Sbjct: 475 cctgctctggcagga 489
>ISCARN4
Length = 2599
Score = 36.2 bits (18), Expect = 0.019
Identities = 24/26 (92%)
Strand = Plus / Plus
Query: 56 gtcaccctgttcctgctctggcagga 81
||||||||||| || |||||||||||
Sbjct: 461 gtcaccctgttgctcctctggcagga 486
>ISCARN78
Length = 2644
Score = 34.2 bits (17), Expect = 0.073
Identities = 26/29 (89%)
Strand = Plus / Plus
Query: 113 tacagctggttctgcgagcactaccgggc 141
||||| |||||||||||| |||| |||||
Sbjct: 527 tacagttggttctgcgagaactatcgggc 555
>ISBf7
Length = 1595
Score = 34.2 bits (17), Expect = 0.073
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 102 atggctaccagtacagc 118
|||||||||||||||||
Sbjct: 267 atggctaccagtacagc 283
>ISAtc1
Length = 1302
Score = 32.2 bits (16), Expect = 0.29
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 148 gggcaagctggatctg 163
||||||||||||||||
Sbjct: 1258 gggcaagctggatctg 1273
>ISSysp8
Length = 1187
Score = 30.2 bits (15), Expect = 1.1
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 131 cactaccgggcctggcagg 149
||||||| |||||||||||
Sbjct: 980 cactaccaggcctggcagg 998
>ISLdr1
Length = 3746
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 10 cattccagactggca 24
|||||||||||||||
Sbjct: 3577 cattccagactggca 3563
>ISRel16
Length = 2597
Score = 30.2 bits (15), Expect = 1.1
Identities = 21/23 (91%)
Strand = Plus / Plus
Query: 191 gaaaagctgttcgtggactatgc 213
|||||||||||||| || |||||
Sbjct: 600 gaaaagctgttcgtcgattatgc 622
>ISAfe11
Length = 2080
Score = 30.2 bits (15), Expect = 1.1
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 47 ggcaagaacgtcaccctgt 65
|||||||||||||| ||||
Sbjct: 1211 ggcaagaacgtcactctgt 1229
>ISXc8
Length = 1227
Score = 30.2 bits (15), Expect = 1.1
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 145 gcagggcaagctggatctg 163
||||||||||||| |||||
Sbjct: 770 gcagggcaagctgtatctg 788
>ISRhosp1
Length = 1321
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 157 ggatctggtgatgcg 171
|||||||||||||||
Sbjct: 746 ggatctggtgatgcg 760
>ISRsp2
Length = 2623
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 118 ctggttctgcgagca 132
|||||||||||||||
Sbjct: 541 ctggttctgcgagca 555
>IS71
Length = 2386
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 144 ggcagggcaagctgg 158
|||||||||||||||
Sbjct: 243 ggcagggcaagctgg 257
>ISHwa27
Length = 1488
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 213 ctgggcacacggtg 226
||||||||||||||
Sbjct: 513 ctgggcacacggtg 500
>ISAs28
Length = 2626
Score = 28.2 bits (14), Expect = 4.5
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 68 ctgctctggcaggagtac 85
||||| ||||||||||||
Sbjct: 517 ctgctatggcaggagtac 534
>ISAs27
Length = 2628
Score = 28.2 bits (14), Expect = 4.5
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 68 ctgctctggcaggagtac 85
||||| ||||||||||||
Sbjct: 517 ctgctatggcaggagtac 534
>ISKpn27
Length = 1080
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 31 ccacgatgagctcc 44
||||||||||||||
Sbjct: 318 ccacgatgagctcc 305
>ISShes11
Length = 7669
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 14 ccagactggcagcg 27
||||||||||||||
Sbjct: 2168 ccagactggcagcg 2155
>ISAzo2
Length = 1545
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 92 gccaatccggatgg 105
||||||||||||||
Sbjct: 1163 gccaatccggatgg 1150
>ISAzo1
Length = 1545
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 92 gccaatccggatgg 105
||||||||||||||
Sbjct: 1154 gccaatccggatgg 1141
>ISMex38
Length = 3841
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 76 gcaggagtaccggg 89
||||||||||||||
Sbjct: 3525 gcaggagtaccggg 3538
>ISVch3
Length = 2593
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 68 ctgctctggcagga 81
||||||||||||||
Sbjct: 525 ctgctctggcagga 538
>ISLxc1
Length = 3533
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 152 aagctggatctggt 165
||||||||||||||
Sbjct: 1213 aagctggatctggt 1226
>ISAzvi5
Length = 1328
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 184 agccggtgaaaagc 197
||||||||||||||
Sbjct: 697 agccggtgaaaagc 710
>IS866
Length = 2716
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 211 tgctgggcacacgg 224
||||||||||||||
Sbjct: 2057 tgctgggcacacgg 2070
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_392_length_232_cov_0.929032_ID_5952
(232 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISAli12B | IS5 | IS427 | Azospirillum lipoferum | 34 | 0.073 |
| ISAli12A | IS5 | IS427 | Azospirillum lipoferum | 34 | 0.073 |
| ISStma11 | ISL3 | Stenotrophomonas maltophilia | 32 | 0.29 | |
| ISDge19 | IS200/IS605 | IS1341 | Deinococcus geothermalis | 32 | 0.29 |
| ISMav4 | IS481 | Mycobacterium avium | 32 | 0.29 | |
| ISBmu5 | IS3 | IS150 | Burkholderia multivorans | 30 | 1.1 |
| ISBlo16 | IS256 | IS1249 | Bifidobacterium longum | 30 | 1.1 |
| ISEcB1 | IS3 | IS150 | Escherichia coli | 30 | 1.1 |
| ISMex29 | IS110 | IS1111 | Methylobacterium extorquens | 30 | 1.1 |
| ISRpa3 | IS481 | Rhodopseudomonas palustris | 30 | 1.1 | |
| ISBam1 | IS3 | IS150 | Burkholderia ambifaria | 30 | 1.1 |
| ISBcen10 | IS3 | IS150 | Burkholderia cenocepacia | 30 | 1.1 |
| ISBcen9 | IS3 | IS150 | Burkholderia cenocepacia | 30 | 1.1 |
| ISDra4 | IS630 | Deinococcus radiodurans | 30 | 1.1 | |
| ISHasa1 | IS200/IS605 | IS1341 | Halorubrum saccharovorum | 28 | 4.5 |
| ISStma15 | IS3 | IS51 | Stenotrophomonas maltophilia | 28 | 4.5 |
| ISMno15 | IS1182 | Methylobacterium nodulans | 28 | 4.5 | |
| ISMsm10 | IS1380 | Mycobacterium smegmatis | 28 | 4.5 | |
| ISPa7 | IS1182 | Pseudomonas aeruginosa | 28 | 4.5 | |
| ISAzo15 | IS66 | Azoarcus sp. | 28 | 4.5 | |
| ISCku5 | IS66 | ISBst12 | Candidatus Kuenenia stuttgartiensis | 28 | 4.5 |
| ISSpu5 | IS21 | Shewanella putrefaciens | 28 | 4.5 | |
| ISSpu2 | IS630 | Shewanella putrefaciens | 28 | 4.5 | |
| ISNme3 | IS1595 | IS1016 | Neisseria meningitidis | 28 | 4.5 |
| ISAzvi12 | IS110 | IS1111 | Azotobacter vinelandii | 28 | 4.5 |
| ISSusp1 | IS3 | IS51 | Sulfitobacter sp. | 28 | 4.5 |
| ISXau3 | IS3 | IS51 | Xanthobacter autotrophicus | 28 | 4.5 |
| ISMpe1 | IS3 | IS3 | Methylibium petroleiphilum | 28 | 4.5 |
| ISGpr1 | IS3 | IS51 | Marine gamma proteobacterium | 28 | 4.5 |
| ISMca2 | IS3 | IS3 | Methylococcus capsulatus | 28 | 4.5 |
| ISCte2 | IS3 | IS3 | Comamonas testosteroni | 28 | 4.5 |
| ISAisp2 | IS3 | IS51 | Acidovorax sp. | 28 | 4.5 |
| ISNme2 | IS1595 | IS1016 | Neisseria meningitidis | 28 | 4.5 |
| ISXac3 | IS3 | IS51 | Xanthomonas axonopodis | 28 | 4.5 |
| ISPa42 | Tn3 | Pseudomonas aeruginosa | 28 | 4.5 | |
| IS30H | IS30 | - | Escherichia hermannii | 28 | 4.5 |
| IS30D | IS30 | - | Escherichia coli | 28 | 4.5 |
| IS30 | IS30 | - | Escherichia coli | 28 | 4.5 |
>ISAli12B
Length = 844
Score = 34.2 bits (17), Expect = 0.073
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 106 gacgatgtcgcgctcct 122
|||||||||||||||||
Sbjct: 639 gacgatgtcgcgctcct 623
>ISAli12A
Length = 845
Score = 34.2 bits (17), Expect = 0.073
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 106 gacgatgtcgcgctcct 122
|||||||||||||||||
Sbjct: 640 gacgatgtcgcgctcct 624
>ISStma11
Length = 4621
Score = 32.2 bits (16), Expect = 0.29
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 186 tgcgtcgtccggcgcg 201
||||||||||||||||
Sbjct: 3671 tgcgtcgtccggcgcg 3686
>ISDge19
Length = 1471
Score = 32.2 bits (16), Expect = 0.29
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 131 gaggtgaagttcagcg 146
||||||||||||||||
Sbjct: 210 gaggtgaagttcagcg 195
>ISMav4
Length = 1089
Score = 32.2 bits (16), Expect = 0.29
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 211 gccgcagccgaccggt 226
||||||||||||||||
Sbjct: 150 gccgcagccgaccggt 135
>ISBmu5
Length = 1447
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 140 ttcagcgtgccgaag 154
|||||||||||||||
Sbjct: 1260 ttcagcgtgccgaag 1246
>ISBlo16
Length = 1323
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 191 cgtccggcgcgggaa 205
|||||||||||||||
Sbjct: 573 cgtccggcgcgggaa 559
>ISEcB1
Length = 1441
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 140 ttcagcgtgccgaag 154
|||||||||||||||
Sbjct: 1252 ttcagcgtgccgaag 1238
>ISMex29
Length = 1339
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 209 tggccgcagccgacc 223
|||||||||||||||
Sbjct: 1271 tggccgcagccgacc 1285
>ISRpa3
Length = 1261
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 106 gacgatgtcgcgctc 120
|||||||||||||||
Sbjct: 1039 gacgatgtcgcgctc 1025
>ISBam1
Length = 1448
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 140 ttcagcgtgccgaag 154
|||||||||||||||
Sbjct: 1258 ttcagcgtgccgaag 1244
>ISBcen10
Length = 1447
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 140 ttcagcgtgccgaag 154
|||||||||||||||
Sbjct: 1260 ttcagcgtgccgaag 1246
>ISBcen9
Length = 1439
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 140 ttcagcgtgccgaag 154
|||||||||||||||
Sbjct: 1252 ttcagcgtgccgaag 1238
>ISDra4
Length = 1048
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 197 gcgcgggaatactgg 211
|||||||||||||||
Sbjct: 75 gcgcgggaatactgg 61
>ISHasa1
Length = 1432
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 96 cgccgccgaagacg 109
||||||||||||||
Sbjct: 300 cgccgccgaagacg 313
>ISStma15
Length = 1250
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 109 gatgtcgcgctcct 122
||||||||||||||
Sbjct: 319 gatgtcgcgctcct 306
>ISMno15
Length = 1561
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 140 ttcagcgtgccgaa 153
||||||||||||||
Sbjct: 1346 ttcagcgtgccgaa 1333
>ISMsm10
Length = 1661
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 158 tcgacgccgctgac 171
||||||||||||||
Sbjct: 1163 tcgacgccgctgac 1176
>ISPa7
Length = 1669
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 140 ttcagcgtgccgaa 153
||||||||||||||
Sbjct: 1356 ttcagcgtgccgaa 1343
>ISAzo15
Length = 2441
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 160 gacgccgctgactc 173
||||||||||||||
Sbjct: 603 gacgccgctgactc 590
>ISCku5
Length = 1900
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 124 aaaatcagaggtga 137
||||||||||||||
Sbjct: 936 aaaatcagaggtga 949
>ISSpu5
Length = 2556
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 191 cgtccggcgcggga 204
||||||||||||||
Sbjct: 107 cgtccggcgcggga 120
>ISSpu2
Length = 1152
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 46 gagcgggcacagca 59
||||||||||||||
Sbjct: 264 gagcgggcacagca 251
>ISNme3
Length = 745
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 119 tcctgaaaatcaga 132
||||||||||||||
Sbjct: 192 tcctgaaaatcaga 205
>ISAzvi12
Length = 1248
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 153 agctatcgacgccg 166
||||||||||||||
Sbjct: 541 agctatcgacgccg 528
>ISSusp1
Length = 1228
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 109 gatgtcgcgctcct 122
||||||||||||||
Sbjct: 293 gatgtcgcgctcct 280
>ISXau3
Length = 1226
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 109 gatgtcgcgctcct 122
||||||||||||||
Sbjct: 294 gatgtcgcgctcct 281
>ISMpe1
Length = 1295
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 108 cgatgtcgcgctcc 121
||||||||||||||
Sbjct: 319 cgatgtcgcgctcc 306
>ISGpr1
Length = 1232
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 109 gatgtcgcgctcct 122
||||||||||||||
Sbjct: 300 gatgtcgcgctcct 287
>ISMca2
Length = 1308
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 108 cgatgtcgcgctcc 121
||||||||||||||
Sbjct: 332 cgatgtcgcgctcc 319
>ISCte2
Length = 1301
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 108 cgatgtcgcgctcc 121
||||||||||||||
Sbjct: 331 cgatgtcgcgctcc 318
>ISAisp2
Length = 1241
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 109 gatgtcgcgctcct 122
||||||||||||||
Sbjct: 304 gatgtcgcgctcct 291
>ISNme2
Length = 731
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 119 tcctgaaaatcaga 132
||||||||||||||
Sbjct: 192 tcctgaaaatcaga 205
>ISXac3
Length = 1234
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 109 gatgtcgcgctcct 122
||||||||||||||
Sbjct: 300 gatgtcgcgctcct 287
>ISPa42
Length = 16941
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 97 gccgccgaagacga 110
||||||||||||||
Sbjct: 15467 gccgccgaagacga 15454
>IS30H
Length = 1221
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 134 gtgaagttcagcgt 147
||||||||||||||
Sbjct: 340 gtgaagttcagcgt 353
>IS30D
Length = 1221
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 134 gtgaagttcagcgt 147
||||||||||||||
Sbjct: 340 gtgaagttcagcgt 353
>IS30
Length = 1221
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 134 gtgaagttcagcgt 147
||||||||||||||
Sbjct: 340 gtgaagttcagcgt 353
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_393_length_232_cov_0.941935_ID_5954
(232 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISMrh1 | IS256 | Mycobacterium rhodesiae | 36 | 0.019 | |
| ISMpo10 | Tn3 | Methylobacterium populi | 34 | 0.073 | |
| TnAs3 | Tn3 | Aeromonas salmonicida | 32 | 0.29 | |
| ISPko3 | IS5 | IS903 | Paracoccus kondratievae | 32 | 0.29 |
| ISRjo4 | IS256 | Rhodococcus jostii | 32 | 0.29 | |
| ISDra5 | IS5 | IS1031 | Deinococcus radiodurans | 32 | 0.29 |
| ISHme3 | IS200/IS605 | IS1341 | Haloferax mediterranei | 30 | 1.1 |
| ISMno24 | IS91 | Methylobacterium nodulans | 30 | 1.1 | |
| ISRer3 | IS256 | Rhodococcus erythropolis | 30 | 1.1 | |
| ISMex23 | IS200/IS605 | IS1341 | Methylobacterium extorquens | 30 | 1.1 |
| ISGdi5 | IS630 | Gluconacetobacter diazotrophicus | 30 | 1.1 | |
| ISPsy20 | IS21 | Pseudomonas syringae | 30 | 1.1 | |
| IS883 | IS66 | Ralstonia eutropha | 30 | 1.1 | |
| ISPsy14 | IS21 | Pseudomonas syringae | 30 | 1.1 | |
| IS1166 | IS256 | - | Rhodococcus sp. | 30 | 1.1 |
| ISHez1 | IS200/IS605 | IS1341 | Halorubrum ezzemoulense | 28 | 4.5 |
| ISHalh1 | IS200/IS605 | IS1341 | Halorubrum halophilum | 28 | 4.5 |
| ISHaar1 | IS200/IS605 | IS1341 | Halorubrum arcis | 28 | 4.5 |
| ISHtu6 | IS200/IS605 | IS1341 | Haloterrigena turkmenica | 28 | 4.5 |
| ISHth2 | ISH6 | Halococcus thailandensis | 28 | 4.5 | |
| ISRel6 | IS630 | Rhizobium etli | 28 | 4.5 | |
| ISGeob4 | IS5 | ISL2 | Geodermatophilus obscurus | 28 | 4.5 |
| ISGeob1 | IS5 | ISL2 | Geodermatophilus obscurus | 28 | 4.5 |
| ISNph20 | IS200/IS605 | IS1341 | Natronomonas pharaonis | 28 | 4.5 |
| ISBmu20 | IS5 | IS5 | Burkholderia multivorans | 28 | 4.5 |
| ISRpa9 | IS5 | IS5 | Rhodopseudomonas palustris | 28 | 4.5 |
| ISStsp1 | ISAzo13 | Streptomyces sp. | 28 | 4.5 | |
| ISPfr3 | ISL3 | Propionibacterium freudenreichii | 28 | 4.5 | |
| ISCef7 | IS1380 | Corynebacterium efficiens | 28 | 4.5 | |
| ISSpo7 | IS5 | IS427 | Silicibacter pomeroyi | 28 | 4.5 |
| ISAnsp9 | ISAs1 | Anaeromyxobacter sp. | 28 | 4.5 | |
| ISMex35 | IS5 | IS5 | Methylobacterium extorquens | 28 | 4.5 |
| ISStma13 | IS3 | IS407 | Stenotrophomonas maltophilia | 28 | 4.5 |
| ISStma11 | ISL3 | Stenotrophomonas maltophilia | 28 | 4.5 | |
| ISThsp13 | IS1380 | Thiomonas sp. | 28 | 4.5 | |
| ISThsp9 | Tn3 | Thiomonas sp. | 28 | 4.5 | |
| ISFsp11 | IS66 | ISBst12 | Frankia sp. | 28 | 4.5 |
| ISPst3 | IS21 | Pseudomonas stutzeri | 28 | 4.5 | |
| ISCmi2 | IS481 | Clavibacter michiganensis | 28 | 4.5 | |
| ISRtr4 | IS5 | IS1031 | Rhizobium tropici | 28 | 4.5 |
| ISLxx2 | IS110 | Leifsonia xyli | 28 | 4.5 | |
| ISNGR8 | IS256 | - | Rhizobium sp | 28 | 4.5 |
| IS666 | IS256 | - | Mycobacterium avium | 28 | 4.5 |
>ISMrh1
Length = 1472
Score = 36.2 bits (18), Expect = 0.019
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 43 ggtgacggtgaccgcgcc 60
||||||||||||||||||
Sbjct: 368 ggtgacggtgaccgcgcc 385
>ISMpo10
Length = 4911
Score = 34.2 bits (17), Expect = 0.073
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 84 ccgcgccgctggccgcg 100
|||||||||||||||||
Sbjct: 3887 ccgcgccgctggccgcg 3903
>TnAs3
Length = 18735
Score = 32.2 bits (16), Expect = 0.29
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 3 cgccgttgccgatgacggcg 22
||||| ||||||||||||||
Sbjct: 2007 cgccgctgccgatgacggcg 1988
>ISPko3
Length = 1017
Score = 32.2 bits (16), Expect = 0.29
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 79 gccgcccgcgccgctg 94
||||||||||||||||
Sbjct: 685 gccgcccgcgccgctg 700
>ISRjo4
Length = 1458
Score = 32.2 bits (16), Expect = 0.29
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 47 acggtgaccgcgcccg 62
||||||||||||||||
Sbjct: 353 acggtgaccgcgcccg 338
>ISDra5
Length = 911
Score = 32.2 bits (16), Expect = 0.29
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 100 gaccgagaacaggtct 115
||||||||||||||||
Sbjct: 558 gaccgagaacaggtct 573
>ISHme3
Length = 1530
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 96 ccgcgaccgagaaca 110
|||||||||||||||
Sbjct: 726 ccgcgaccgagaaca 740
>ISMno24
Length = 2157
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 16 gacggcggtggtgtc 30
|||||||||||||||
Sbjct: 1329 gacggcggtggtgtc 1343
>ISRer3
Length = 1471
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 43 ggtgacggtgaccgc 57
|||||||||||||||
Sbjct: 367 ggtgacggtgaccgc 381
>ISMex23
Length = 1390
Score = 30.2 bits (15), Expect = 1.1
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 83 cccgcgccgctggccgcga 101
|||||||||||| ||||||
Sbjct: 629 cccgcgccgctgcccgcga 647
>ISGdi5
Length = 1160
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 188 tgcatgctggcggtg 202
|||||||||||||||
Sbjct: 825 tgcatgctggcggtg 811
>ISPsy20
Length = 2572
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 212 cgggcattgaccgtg 226
|||||||||||||||
Sbjct: 753 cgggcattgaccgtg 739
>IS883
Length = 2461
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 197 gcggtgttgttgccg 211
|||||||||||||||
Sbjct: 284 gcggtgttgttgccg 298
>ISPsy14
Length = 2597
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 131 tcgaccatcaggccg 145
|||||||||||||||
Sbjct: 1871 tcgaccatcaggccg 1857
>IS1166
Length = 1469
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 43 ggtgacggtgaccgc 57
|||||||||||||||
Sbjct: 367 ggtgacggtgaccgc 381
>ISHez1
Length = 1579
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 12 cgatgacggcggtg 25
||||||||||||||
Sbjct: 90 cgatgacggcggtg 77
>ISHalh1
Length = 1470
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 12 cgatgacggcggtg 25
||||||||||||||
Sbjct: 94 cgatgacggcggtg 81
>ISHaar1
Length = 1590
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 12 cgatgacggcggtg 25
||||||||||||||
Sbjct: 91 cgatgacggcggtg 78
>ISHtu6
Length = 1516
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 159 ggtcggtgaggtcg 172
||||||||||||||
Sbjct: 464 ggtcggtgaggtcg 451
>ISHth2
Length = 1442
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 205 gttgccgcgggcat 218
||||||||||||||
Sbjct: 274 gttgccgcgggcat 261
>ISRel6
Length = 1047
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 147 tgatggcatcgcgg 160
||||||||||||||
Sbjct: 822 tgatggcatcgcgg 809
>ISGeob4
Length = 982
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 79 gccgcccgcgccgc 92
||||||||||||||
Sbjct: 428 gccgcccgcgccgc 441
>ISGeob1
Length = 1020
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 79 gccgcccgcgccgc 92
||||||||||||||
Sbjct: 424 gccgcccgcgccgc 437
>ISNph20
Length = 1624
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 12 cgatgacggcggtg 25
||||||||||||||
Sbjct: 148 cgatgacggcggtg 135
>ISBmu20
Length = 1158
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 124 gttggcttcgacca 137
||||||||||||||
Sbjct: 680 gttggcttcgacca 667
>ISRpa9
Length = 1539
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 47 acggtgaccgcgcc 60
||||||||||||||
Sbjct: 1374 acggtgaccgcgcc 1387
>ISStsp1
Length = 1694
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 161 tcggtgaggtcgtt 174
||||||||||||||
Sbjct: 1382 tcggtgaggtcgtt 1369
>ISPfr3
Length = 1457
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 18 cggcggtggtgtcc 31
||||||||||||||
Sbjct: 438 cggcggtggtgtcc 425
>ISCef7
Length = 1687
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 189 gcatgctggcggtg 202
||||||||||||||
Sbjct: 1211 gcatgctggcggtg 1198
>ISSpo7
Length = 843
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 3 cgccgttgccgatg 16
||||||||||||||
Sbjct: 450 cgccgttgccgatg 463
>ISAnsp9
Length = 1704
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 189 gcatgctggcggtg 202
||||||||||||||
Sbjct: 1329 gcatgctggcggtg 1342
>ISMex35
Length = 1294
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 157 gcggtcggtgaggt 170
||||||||||||||
Sbjct: 54 gcggtcggtgaggt 67
>ISStma13
Length = 1216
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 105 agaacaggtcttcg 118
||||||||||||||
Sbjct: 280 agaacaggtcttcg 293
>ISStma11
Length = 4621
Score = 28.2 bits (14), Expect = 4.5
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 12 cgatgacggcggtggtgt 29
||||| ||||||||||||
Sbjct: 1946 cgatgccggcggtggtgt 1929
>ISThsp13
Length = 1583
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 56 gcgcccgacacgcc 69
||||||||||||||
Sbjct: 148 gcgcccgacacgcc 135
>ISThsp9
Length = 6215
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 82 gcccgcgccgctgg 95
||||||||||||||
Sbjct: 5837 gcccgcgccgctgg 5824
>ISFsp11
Length = 1836
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 79 gccgcccgcgccgc 92
||||||||||||||
Sbjct: 1348 gccgcccgcgccgc 1361
>ISPst3
Length = 2606
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 92 ctggccgcgaccga 105
||||||||||||||
Sbjct: 1493 ctggccgcgaccga 1506
>ISCmi2
Length = 1054
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 7 gttgccgatgacgg 20
||||||||||||||
Sbjct: 249 gttgccgatgacgg 262
>ISRtr4
Length = 932
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 132 cgaccatcaggccg 145
||||||||||||||
Sbjct: 545 cgaccatcaggccg 532
>ISLxx2
Length = 1427
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 79 gccgcccgcgccgc 92
||||||||||||||
Sbjct: 640 gccgcccgcgccgc 653
>ISNGR8
Length = 1298
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 144 cggtgatggcatcg 157
||||||||||||||
Sbjct: 782 cggtgatggcatcg 769
>IS666
Length = 1472
Score = 28.2 bits (14), Expect = 4.5
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 43 ggtgacggtgaccgcgcc 60
||||||||||| ||||||
Sbjct: 368 ggtgacggtgatcgcgcc 385
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_394_length_232_cov_0.941935_ID_5956
(232 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISAzo12 | IS21 | Azoarcus sp. | 36 | 0.019 | |
| ISYpe1 | IS3 | IS407 | Yersinia pestis | 32 | 0.29 |
| ISYps8 | IS3 | IS407 | Yersinia pseudotuberculosis | 32 | 0.29 |
| ISApr7 | IS1595 | ISNwi1 | Alpha proteobacterium | 30 | 1.1 |
| ISSpu5 | IS21 | Shewanella putrefaciens | 30 | 1.1 | |
| ISPsp2 | ISL3 | - | Pseudomonas sp. | 30 | 1.1 |
| ISBm2 | IS3 | IS407 | Brucella melitensis | 30 | 1.1 |
| IS1411 | ISL3 | - | Pseudomonas sp | 30 | 1.1 |
| Tn5403 | Tn3 | Klebsiella pneumoniae | 28 | 4.5 | |
| ISPsy32 | IS630 | Pseudomonas syringae | 28 | 4.5 | |
| ISStvi1 | ISAzo13 | Streptomyces violaceusniger | 28 | 4.5 | |
| ISEc49 | IS66 | Escherichia coli | 28 | 4.5 | |
| ISEc36 | IS3 | IS2 | Escherichia coli | 28 | 4.5 |
| ISEic1 | IS1 | Edwardsiella ictaluri | 28 | 4.5 | |
| ISHha2 | IS5 | Halorhodospira halophila | 28 | 4.5 | |
| ISSlsp2 | IS5 | IS5 | Sulfurovum sp. | 28 | 4.5 |
| ISMno26 | IS110 | IS1111 | Methylobacterium nodulans | 28 | 4.5 |
| ISAar10 | IS1380 | Arthrobacter arilaitensis | 28 | 4.5 | |
| ISCARN65 | IS21 | Metagenomic data from CARNOULES | 28 | 4.5 | |
| ISCARN36 | IS110 | IS1111 | Metagenomic data from CARNOULES | 28 | 4.5 |
| ISThsp1 | IS1182 | Thiomonas sp. | 28 | 4.5 | |
| ISC1212 | IS5 | Sulfolobus solfataricus | 28 | 4.5 | |
| ISPa9 | IS5 | IS5 | Pseudomonas aeruginosa | 28 | 4.5 |
| ISMmg2 | IS110 | IS1111 | Magnetospirillum magnetotacticum | 28 | 4.5 |
| ISRsp2 | IS21 | - | Rhizobium sp. | 28 | 4.5 |
| ISRa1 | IS982 | - | Riemerella anatipestifer | 28 | 4.5 |
| IS1162 | IS21 | - | Pseudomonas fluorescens | 28 | 4.5 |
>ISAzo12
Length = 3075
Score = 36.2 bits (18), Expect = 0.019
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 99 cgaccagggcgcccgcgc 116
||||||||||||||||||
Sbjct: 2560 cgaccagggcgcccgcgc 2577
>ISYpe1
Length = 1212
Score = 32.2 bits (16), Expect = 0.29
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 165 caatggcggcaagaat 180
||||||||||||||||
Sbjct: 1079 caatggcggcaagaat 1094
>ISYps8
Length = 1212
Score = 32.2 bits (16), Expect = 0.29
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 165 caatggcggcaagaat 180
||||||||||||||||
Sbjct: 1079 caatggcggcaagaat 1094
>ISApr7
Length = 3923
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 77 cgctccattgcggcg 91
|||||||||||||||
Sbjct: 2011 cgctccattgcggcg 1997
>ISSpu5
Length = 2556
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 86 gcggcggccatgccg 100
|||||||||||||||
Sbjct: 1777 gcggcggccatgccg 1763
>ISPsp2
Length = 1416
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 204 tcacctcgatgagcg 218
|||||||||||||||
Sbjct: 1198 tcacctcgatgagcg 1184
>ISBm2
Length = 1274
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 176 agaatgccgatgatc 190
|||||||||||||||
Sbjct: 109 agaatgccgatgatc 95
>IS1411
Length = 1419
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 204 tcacctcgatgagcg 218
|||||||||||||||
Sbjct: 1201 tcacctcgatgagcg 1187
>Tn5403
Length = 3663
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 180 tgccgatgatcgcg 193
||||||||||||||
Sbjct: 2190 tgccgatgatcgcg 2203
>ISPsy32
Length = 1170
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 168 tggcggcaagaatg 181
||||||||||||||
Sbjct: 340 tggcggcaagaatg 327
>ISStvi1
Length = 1738
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 205 cacctcgatgagcg 218
||||||||||||||
Sbjct: 124 cacctcgatgagcg 137
>ISEc49
Length = 2766
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 12 ctggcgcgccagtg 25
||||||||||||||
Sbjct: 138 ctggcgcgccagtg 151
>ISEc36
Length = 1321
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 70 gaagcgacgctcca 83
||||||||||||||
Sbjct: 961 gaagcgacgctcca 948
>ISEic1
Length = 764
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 131 gagcgcaacacgta 144
||||||||||||||
Sbjct: 325 gagcgcaacacgta 338
>ISHha2
Length = 1339
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 207 cctcgatgagcgtg 220
||||||||||||||
Sbjct: 525 cctcgatgagcgtg 512
>ISSlsp2
Length = 1570
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 156 tggggtaggcaatg 169
||||||||||||||
Sbjct: 602 tggggtaggcaatg 589
>ISMno26
Length = 1353
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 93 ccatgccgaccagg 106
||||||||||||||
Sbjct: 235 ccatgccgaccagg 222
>ISAar10
Length = 1602
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 181 gccgatgatcgcga 194
||||||||||||||
Sbjct: 646 gccgatgatcgcga 659
>ISCARN65
Length = 2433
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 88 ggcggccatgccga 101
||||||||||||||
Sbjct: 1955 ggcggccatgccga 1942
>ISCARN36
Length = 1180
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 93 ccatgccgaccagg 106
||||||||||||||
Sbjct: 243 ccatgccgaccagg 230
>ISThsp1
Length = 1539
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 90 cggccatgccgacc 103
||||||||||||||
Sbjct: 1452 cggccatgccgacc 1465
>ISC1212
Length = 1213
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 151 gtagttggggtagg 164
||||||||||||||
Sbjct: 666 gtagttggggtagg 679
>ISPa9
Length = 1207
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 103 cagggcgcccgcgc 116
||||||||||||||
Sbjct: 245 cagggcgcccgcgc 232
>ISMmg2
Length = 1380
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 93 ccatgccgaccagg 106
||||||||||||||
Sbjct: 248 ccatgccgaccagg 235
>ISRsp2
Length = 2623
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 86 gcggcggccatgcc 99
||||||||||||||
Sbjct: 1802 gcggcggccatgcc 1789
>ISRa1
Length = 983
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 143 tactgcgtgtagtt 156
||||||||||||||
Sbjct: 541 tactgcgtgtagtt 528
>IS1162
Length = 2634
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 11 gctggcgcgccagt 24
||||||||||||||
Sbjct: 1584 gctggcgcgccagt 1597
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_395_length_232_cov_0.935484_ID_5958
(232 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISMex17 | IS110 | Methylobacterium extorquens | 30 | 1.1 | |
| ISMex45 | IS200/IS605 | IS1341 | Methylobacterium extorquens | 28 | 4.5 |
| ISHma16 | IS200/IS605 | IS1341 | Haloarcula marismortui | 28 | 4.5 |
| ISBlo17 | IS256 | IS1249 | Bifidobacterium longum | 28 | 4.5 |
| ISCur3 | IS256 | IS1249 | Corynebacterium urealyticum | 28 | 4.5 |
| ISNmo4 | IS5 | IS5 | Nitrococcus mobilis | 28 | 4.5 |
| ISUnCu14 | IS66 | Uncultured bacterium | 28 | 4.5 | |
| ISMtsp8 | IS21 | Methylobacterium sp. | 28 | 4.5 | |
| ISAzo1 | IS1182 | Azoarcus sp. | 28 | 4.5 | |
| ISMex41 | IS630 | Methylobacterium extorquens | 28 | 4.5 | |
| ISMex3 | IS256 | Methylobacterium extorquens | 28 | 4.5 | |
| ISNmu1 | IS3 | IS3 | Nitrosospira multiformis | 28 | 4.5 |
| ISMca7 | IS5 | IS5 | Methylococcus capsulatus | 28 | 4.5 |
| ISPpa4 | IS5 | IS903 | Paracoccus pantotrophus | 28 | 4.5 |
| ISAs2 | IS30 | - | Aeromonas salmonicida | 28 | 4.5 |
| IS656 | IS1182 | - | Bacillus halodurans | 28 | 4.5 |
>ISMex17
Length = 1132
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 41 acccgcttgaccagc 55
|||||||||||||||
Sbjct: 1103 acccgcttgaccagc 1117
>ISMex45
Length = 1270
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 27 cgcgcaggtgatcc 40
||||||||||||||
Sbjct: 1152 cgcgcaggtgatcc 1165
>ISHma16
Length = 1526
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 17 ttctcgtcctcgcg 30
||||||||||||||
Sbjct: 1069 ttctcgtcctcgcg 1056
>ISBlo17
Length = 1352
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 73 gtcgccaaaagcga 86
||||||||||||||
Sbjct: 548 gtcgccaaaagcga 561
>ISCur3
Length = 1406
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 58 aaagccgaccacga 71
||||||||||||||
Sbjct: 1255 aaagccgaccacga 1268
>ISNmo4
Length = 1176
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 20 tcgtcctcgcgcag 33
||||||||||||||
Sbjct: 712 tcgtcctcgcgcag 699
>ISUnCu14
Length = 2442
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 93 aggcaatgacggcc 106
||||||||||||||
Sbjct: 2289 aggcaatgacggcc 2276
>ISMtsp8
Length = 2371
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 22 gtcctcgcgcaggt 35
||||||||||||||
Sbjct: 885 gtcctcgcgcaggt 872
>ISAzo1
Length = 1545
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 9 cctcgatcttctcg 22
||||||||||||||
Sbjct: 542 cctcgatcttctcg 529
>ISMex41
Length = 1048
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 65 accacgatgtcgcc 78
||||||||||||||
Sbjct: 773 accacgatgtcgcc 760
>ISMex3
Length = 1399
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 94 ggcaatgacggccg 107
||||||||||||||
Sbjct: 551 ggcaatgacggccg 538
>ISNmu1
Length = 1221
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 60 agccgaccacgatg 73
||||||||||||||
Sbjct: 824 agccgaccacgatg 811
>ISMca7
Length = 1172
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 20 tcgtcctcgcgcag 33
||||||||||||||
Sbjct: 710 tcgtcctcgcgcag 697
>ISPpa4
Length = 1053
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 12 cgatcttctcgtcc 25
||||||||||||||
Sbjct: 634 cgatcttctcgtcc 621
>ISAs2
Length = 1084
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 41 acccgcttgaccag 54
||||||||||||||
Sbjct: 695 acccgcttgaccag 682
>IS656
Length = 1558
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 91 gtaggcaatgacgg 104
||||||||||||||
Sbjct: 1044 gtaggcaatgacgg 1031
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_396_length_232_cov_1.4_ID_5960
(232 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISMra3 | IS256 | Methylobacterium radiotolerans | 36 | 0.019 | |
| ISMno2 | IS66 | ISBst12 | Methylobacterium nodulans | 36 | 0.019 |
| ISAzo12 | IS21 | Azoarcus sp. | 34 | 0.073 | |
| ISMmg1 | IS110 | IS1111 | Magnetospirillum magnetotacticum | 32 | 0.29 |
| ISPpu9 | IS110 | Pseudomonas putida | 32 | 0.29 | |
| ISPa55 | IS110 | IS1111 | Pseudomonas aeruginosa | 30 | 1.1 |
| ISMex11 | IS3 | IS407 | Methylobacterium extorquens | 30 | 1.1 |
| ISAfe9 | IS21 | Acidithiobacillus ferrooxidans | 30 | 1.1 | |
| ISDge13 | IS6 | Deinococcus geothermalis | 30 | 1.1 | |
| ISFsp5 | IS4 | IS4 | Frankia sp. | 30 | 1.1 |
| ISBlma1 | IS4 | IS4Sa | Blastopirellula marina | 30 | 1.1 |
| ISH8C | IS4 | ISH8 | Halobacterium sp | 30 | 1.1 |
| ISHwa34 | IS200/IS605 | IS1341 | Haloquadratum walsbyi | 28 | 4.5 |
| TnAs2 | Tn3 | Aeromonas salmonicida | 28 | 4.5 | |
| ISHmu5 | IS200/IS605 | Halomicrobium mukohataei | 28 | 4.5 | |
| ISAzs34 | ISNCY | IS892 | Azospirillum sp. | 28 | 4.5 |
| ISAzs21 | IS66 | Azospirillum sp. | 28 | 4.5 | |
| ISNph5 | IS200/IS605 | Natronomonas pharaonis | 28 | 4.5 | |
| ISNpu1 | IS1182 | Nostoc punctiforme | 28 | 4.5 | |
| IS1090 | IS256 | Ralstonia eutropha | 28 | 4.5 | |
| ISStma11 | ISL3 | Stenotrophomonas maltophilia | 28 | 4.5 | |
| ISThsp14 | ISL3 | Thiomonas sp. | 28 | 4.5 | |
| ISCARN79 | IS1380 | Metagenomic data from CARNOULES | 28 | 4.5 | |
| ISCARN24 | IS21 | Metagenomic data from CARNOULES | 28 | 4.5 | |
| ISCARN17 | IS21 | Metagenomic data from CARNOULES | 28 | 4.5 | |
| ISMno3 | IS66 | ISBst12 | Methylobacterium nodulans | 28 | 4.5 |
| ISDge14 | IS701 | Deinococcus geothermalis | 28 | 4.5 | |
| ISNieu4 | IS5 | IS1031 | Nitrosomonas eutropha | 28 | 4.5 |
| ISXc4 | Tn3 | - | Xanthomonas campestris | 28 | 4.5 |
| ISRso7 | IS256 | - | Ralstonia solanacearum | 28 | 4.5 |
| IS866 | IS66 | - | Agrobacterium tumefaciens | 28 | 4.5 |
>ISMra3
Length = 1398
Score = 36.2 bits (18), Expect = 0.019
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 125 aggtgctgcgtagcggcg 142
||||||||||||||||||
Sbjct: 1237 aggtgctgcgtagcggcg 1220
>ISMno2
Length = 1419
Score = 36.2 bits (18), Expect = 0.019
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 110 cctacgagcggctgcagg 127
||||||||||||||||||
Sbjct: 577 cctacgagcggctgcagg 594
>ISAzo12
Length = 3075
Score = 34.2 bits (17), Expect = 0.073
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 151 gccgaagccatcgccgg 167
|||||||||||||||||
Sbjct: 2540 gccgaagccatcgccgg 2556
>ISMmg1
Length = 1359
Score = 32.2 bits (16), Expect = 0.29
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 151 gccgaagccatcgccg 166
||||||||||||||||
Sbjct: 355 gccgaagccatcgccg 370
>ISPpu9
Length = 2043
Score = 32.2 bits (16), Expect = 0.29
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 195 ctacggcctctttccc 210
||||||||||||||||
Sbjct: 1862 ctacggcctctttccc 1847
>ISPa55
Length = 1543
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 151 gccgaagccatcgcc 165
|||||||||||||||
Sbjct: 391 gccgaagccatcgcc 405
>ISMex11
Length = 1227
Score = 30.2 bits (15), Expect = 1.1
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 59 tcaagcagctggtcgccga 77
||||||||||||| |||||
Sbjct: 276 tcaagcagctggttgccga 294
>ISAfe9
Length = 2503
Score = 30.2 bits (15), Expect = 1.1
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 175 gaggtaaagcgggacctgg 193
||||||||||| |||||||
Sbjct: 2377 gaggtaaagcgcgacctgg 2395
>ISDge13
Length = 806
Score = 30.2 bits (15), Expect = 1.1
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 47 agatcaagggcatcaagca 65
||||||||||| |||||||
Sbjct: 288 agatcaagggcgtcaagca 306
>ISFsp5
Length = 1617
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 138 cggcgacaagtcggc 152
|||||||||||||||
Sbjct: 578 cggcgacaagtcggc 564
>ISBlma1
Length = 1528
Score = 30.2 bits (15), Expect = 1.1
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 147 gtcggccgaagccatcgcc 165
||||||||||| |||||||
Sbjct: 1034 gtcggccgaagtcatcgcc 1052
>ISH8C
Length = 1403
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 28 acgcgctcgctggat 42
|||||||||||||||
Sbjct: 887 acgcgctcgctggat 901
>ISHwa34
Length = 1466
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 52 aagggcatcaagca 65
||||||||||||||
Sbjct: 509 aagggcatcaagca 522
>TnAs2
Length = 8650
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 134 gtagcggcgacaag 147
||||||||||||||
Sbjct: 1927 gtagcggcgacaag 1940
>ISHmu5
Length = 1847
Score = 28.2 bits (14), Expect = 4.5
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 210 cacgaagtaccccgccga 227
||||||||||| ||||||
Sbjct: 210 cacgaagtaccgcgccga 227
>ISAzs34
Length = 1650
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 86 tgcgcatccgcaat 99
||||||||||||||
Sbjct: 155 tgcgcatccgcaat 142
>ISAzs21
Length = 2598
Score = 28.2 bits (14), Expect = 4.5
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 63 gcagctggtcgccgagca 80
|||||| |||||||||||
Sbjct: 983 gcagctcgtcgccgagca 1000
>ISNph5
Length = 1847
Score = 28.2 bits (14), Expect = 4.5
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 210 cacgaagtaccccgccga 227
||||||||||| ||||||
Sbjct: 210 cacgaagtaccgcgccga 227
>ISNpu1
Length = 1803
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 56 gcatcaagcagctg 69
||||||||||||||
Sbjct: 788 gcatcaagcagctg 775
>IS1090
Length = 1343
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 149 cggccgaagccatc 162
||||||||||||||
Sbjct: 139 cggccgaagccatc 152
>ISStma11
Length = 4621
Score = 28.2 bits (14), Expect = 4.5
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 73 gccgagcatgagctgcgc 90
||||||||||| ||||||
Sbjct: 3464 gccgagcatgacctgcgc 3447
>ISThsp14
Length = 1302
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 114 cgagcggctgcagg 127
||||||||||||||
Sbjct: 1119 cgagcggctgcagg 1132
>ISCARN79
Length = 1663
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 23 tcgccacgcgctcg 36
||||||||||||||
Sbjct: 290 tcgccacgcgctcg 303
>ISCARN24
Length = 2778
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 82 gagctgcgcatccg 95
||||||||||||||
Sbjct: 2196 gagctgcgcatccg 2209
>ISCARN17
Length = 2539
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 116 agcggctgcaggtg 129
||||||||||||||
Sbjct: 1092 agcggctgcaggtg 1079
>ISMno3
Length = 1364
Score = 28.2 bits (14), Expect = 4.5
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 110 cctacgagcggctgcagg 127
||||||||||||| ||||
Sbjct: 519 cctacgagcggctacagg 536
>ISDge14
Length = 1152
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 183 gcgggacctgggct 196
||||||||||||||
Sbjct: 632 gcgggacctgggct 645
>ISNieu4
Length = 842
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 93 ccgcaatggcatgc 106
||||||||||||||
Sbjct: 490 ccgcaatggcatgc 477
>ISXc4
Length = 6938
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 147 gtcggccgaagcca 160
||||||||||||||
Sbjct: 3890 gtcggccgaagcca 3877
>ISRso7
Length = 1344
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 149 cggccgaagccatc 162
||||||||||||||
Sbjct: 139 cggccgaagccatc 152
>IS866
Length = 2716
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 157 gccatcgccggttt 170
||||||||||||||
Sbjct: 160 gccatcgccggttt 147
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_397_length_232_cov_0.941935_ID_5962
(232 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISRer1 | IS1380 | Rhodococcus erythropolis | 36 | 0.019 | |
| ISPpu9 | IS110 | Pseudomonas putida | 34 | 0.073 | |
| ISPre3 | IS66 | Pseudomonas resinovorans | 32 | 0.29 | |
| ISMav5 | IS481 | Mycobacterium avium | 32 | 0.29 | |
| ISGau7 | IS21 | Gemmatimonas aurantiaca | 30 | 1.1 | |
| ISBad1 | IS21 | Bifidobacterium adolescentis | 30 | 1.1 | |
| ISMav1 | IS21 | - | Mycobacterium avium | 30 | 1.1 |
| IS1612 | IS21 | - | Mycobacterium avium | 30 | 1.1 |
| ISAeme22 | IS4 | IS50 | Aeromonas media | 28 | 4.5 |
| ISAeme2 | ISAs1 | Aeromonas media | 28 | 4.5 | |
| TnAs2 | Tn3 | Aeromonas salmonicida | 28 | 4.5 | |
| ISNpe23 | IS1595 | ISH4 | Natrinema pellirubrum | 28 | 4.5 |
| ISHvo5 | IS1595 | ISH4 | Haloferax volcanii | 28 | 4.5 |
| ISAzs7 | IS66 | ISBst12 | Azospirillum sp. | 28 | 4.5 |
| ISAzs1 | IS701 | Azospirillum sp. | 28 | 4.5 | |
| ISRm33 | IS5 | IS903 | Sinorhizobium meliloti | 28 | 4.5 |
| ISRta5 | IS5 | IS903 | Cupriavidus taiwanensis | 28 | 4.5 |
| ISUnCu14 | IS66 | Uncultured bacterium | 28 | 4.5 | |
| ISButh4 | IS5 | IS5 | Burkholderia thailandensis | 28 | 4.5 |
| ISPfr16 | IS30 | Propionibacterium freudenreichii | 28 | 4.5 | |
| ISAtu7 | IS110 | Agrobacterium tumefaciens | 28 | 4.5 | |
| ISBfun3 | IS1182 | Burkholderia fungorum | 28 | 4.5 | |
| ISAde2 | IS1182 | Anaeromyxobacter dehalogenans | 28 | 4.5 | |
| ISMdi27 | IS21 | Methylobacterium dichloromethanicum | 28 | 4.5 | |
| ISMex39 | IS21 | Methylobacterium extorquens | 28 | 4.5 | |
| ISMex3 | IS256 | Methylobacterium extorquens | 28 | 4.5 | |
| ISRhsp5 | IS66 | Rhodobacter sphaeroides | 28 | 4.5 | |
| ISRosp3 | IS1595 | ISNha5 | Roseobacter sp. | 28 | 4.5 |
| ISHma11 | IS5 | ISH1 | Haloarcula marismortui | 28 | 4.5 |
| ISAma3 | ISAs1 | Alteromonas macleodii | 28 | 4.5 | |
| ISMva2 | IS481 | Mycobacterium vanbaalenii | 28 | 4.5 | |
| IS1088 | IS30 | Cupriavidus necator | 28 | 4.5 | |
| ISBlo4 | IS30 | Bifidobacterium longum | 28 | 4.5 | |
| ISH50 | IS1595 | ISH4 | Halobacterium salinarum | 28 | 4.5 |
| ISH4 | IS1595 | ISH4 | Halobacterium sp. | 28 | 4.5 |
| IS801 | IS91 | - | Pseudomonas syringae | 28 | 4.5 |
| IS5376 | IS21 | - | Bacillus stearothermophilus | 28 | 4.5 |
| IS4811 | IS5 | IS1031 | Streptomyces lividans | 28 | 4.5 |
| IS1405 | IS5 | IS5 | Ralstonia solanacearum | 28 | 4.5 |
| IS1096 | ISL3 | - | Mycobacterium smegmatis | 28 | 4.5 |
>ISRer1
Length = 1687
Score = 36.2 bits (18), Expect = 0.019
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 177 tcgcaccgagccagacgccgat 198
|||||||||||| |||||||||
Sbjct: 1203 tcgcaccgagcccgacgccgat 1182
>ISPpu9
Length = 2043
Score = 34.2 bits (17), Expect = 0.073
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 176 atcgcaccgagccagac 192
|||||||||||||||||
Sbjct: 1444 atcgcaccgagccagac 1460
>ISPre3
Length = 2957
Score = 32.2 bits (16), Expect = 0.29
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 66 cgaccaatggctgcaa 81
||||||||||||||||
Sbjct: 1485 cgaccaatggctgcaa 1470
>ISMav5
Length = 1357
Score = 32.2 bits (16), Expect = 0.29
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 124 ttgcgggcggcgctgg 139
||||||||||||||||
Sbjct: 669 ttgcgggcggcgctgg 684
>ISGau7
Length = 2510
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 83 gcctgcgcatggcgc 97
|||||||||||||||
Sbjct: 1762 gcctgcgcatggcgc 1748
>ISBad1
Length = 2525
Score = 30.2 bits (15), Expect = 1.1
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 210 gaccggcgcatgcctcgca 228
|||||||||||||| ||||
Sbjct: 396 gaccggcgcatgccacgca 414
>ISMav1
Length = 2536
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 95 cgctcgacgacaccg 109
|||||||||||||||
Sbjct: 2230 cgctcgacgacaccg 2244
>IS1612
Length = 2532
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 95 cgctcgacgacaccg 109
|||||||||||||||
Sbjct: 2226 cgctcgacgacaccg 2240
>ISAeme22
Length = 1534
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 120 cgccttgcgggcgg 133
||||||||||||||
Sbjct: 875 cgccttgcgggcgg 862
>ISAeme2
Length = 1212
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 178 cgcaccgagccaga 191
||||||||||||||
Sbjct: 1109 cgcaccgagccaga 1122
>TnAs2
Length = 8650
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 109 gtgccggacaccgc 122
||||||||||||||
Sbjct: 7319 gtgccggacaccgc 7332
>ISNpe23
Length = 1001
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 59 gcgagcgcgaccaa 72
||||||||||||||
Sbjct: 506 gcgagcgcgaccaa 519
>ISHvo5
Length = 1001
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 59 gcgagcgcgaccaa 72
||||||||||||||
Sbjct: 532 gcgagcgcgaccaa 519
>ISAzs7
Length = 1455
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 186 gccagacgccgatc 199
||||||||||||||
Sbjct: 351 gccagacgccgatc 338
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 124 ttgcgggcggcgct 137
||||||||||||||
Sbjct: 487 ttgcgggcggcgct 500
>ISAzs1
Length = 1508
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 150 cacggccatggcgg 163
||||||||||||||
Sbjct: 657 cacggccatggcgg 670
>ISRm33
Length = 1116
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 132 ggcgctggatgccg 145
||||||||||||||
Sbjct: 571 ggcgctggatgccg 584
>ISRta5
Length = 1130
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 58 agcgagcgcgacca 71
||||||||||||||
Sbjct: 1049 agcgagcgcgacca 1036
>ISUnCu14
Length = 2442
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 119 ccgccttgcgggcg 132
||||||||||||||
Sbjct: 619 ccgccttgcgggcg 606
>ISButh4
Length = 1483
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 215 gcgcatgcctcgca 228
||||||||||||||
Sbjct: 32 gcgcatgcctcgca 19
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 127 cgggcggcgctgga 140
||||||||||||||
Sbjct: 840 cgggcggcgctgga 853
>ISPfr16
Length = 1234
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 48 gatcggctgcagcg 61
||||||||||||||
Sbjct: 165 gatcggctgcagcg 178
>ISAtu7
Length = 1472
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 94 gcgctcgacgacac 107
||||||||||||||
Sbjct: 851 gcgctcgacgacac 864
>ISBfun3
Length = 1627
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 133 gcgctggatgccgc 146
||||||||||||||
Sbjct: 584 gcgctggatgccgc 597
>ISAde2
Length = 1498
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 50 tcggctgcagcgag 63
||||||||||||||
Sbjct: 129 tcggctgcagcgag 116
>ISMdi27
Length = 2476
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 126 gcgggcggcgctgg 139
||||||||||||||
Sbjct: 1000 gcgggcggcgctgg 1013
>ISMex39
Length = 2456
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 126 gcgggcggcgctgg 139
||||||||||||||
Sbjct: 984 gcgggcggcgctgg 997
>ISMex3
Length = 1399
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 162 ggaccacctgcgca 175
||||||||||||||
Sbjct: 1124 ggaccacctgcgca 1137
>ISRhsp5
Length = 2528
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 75 gctgcaatgcctgc 88
||||||||||||||
Sbjct: 895 gctgcaatgcctgc 882
>ISRosp3
Length = 3472
Score = 28.2 bits (14), Expect = 4.5
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 13 atgccgcgcatgcgacgt 30
|||| |||||||||||||
Sbjct: 1072 atgcagcgcatgcgacgt 1089
>ISHma11
Length = 929
Score = 28.2 bits (14), Expect = 4.5
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 95 cgctcgacgacaccgtgc 112
|||||| |||||||||||
Sbjct: 797 cgctcggcgacaccgtgc 814
>ISAma3
Length = 1205
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 66 cgaccaatggctgc 79
||||||||||||||
Sbjct: 968 cgaccaatggctgc 955
>ISMva2
Length = 1966
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 145 gcattcacggccat 158
||||||||||||||
Sbjct: 582 gcattcacggccat 569
>IS1088
Length = 1103
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 82 tgcctgcgcatggc 95
||||||||||||||
Sbjct: 459 tgcctgcgcatggc 472
>ISBlo4
Length = 1399
Score = 28.2 bits (14), Expect = 4.5
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 74 ggctgcaatgcctgcgca 91
|||| |||||||||||||
Sbjct: 610 ggctccaatgcctgcgca 593
>ISH50
Length = 996
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 59 gcgagcgcgaccaa 72
||||||||||||||
Sbjct: 504 gcgagcgcgaccaa 517
>ISH4
Length = 1004
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 59 gcgagcgcgaccaa 72
||||||||||||||
Sbjct: 507 gcgagcgcgaccaa 520
>IS801
Length = 1512
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 129 ggcggcgctggatg 142
||||||||||||||
Sbjct: 695 ggcggcgctggatg 708
>IS5376
Length = 2107
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 154 gccatggcggacca 167
||||||||||||||
Sbjct: 1365 gccatggcggacca 1352
>IS4811
Length = 5396
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 127 cgggcggcgctgga 140
||||||||||||||
Sbjct: 1778 cgggcggcgctgga 1791
>IS1405
Length = 1174
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 209 tgaccggcgcatgc 222
||||||||||||||
Sbjct: 196 tgaccggcgcatgc 183
>IS1096
Length = 2259
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 97 ctcgacgacaccgt 110
||||||||||||||
Sbjct: 1794 ctcgacgacaccgt 1807
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_398_length_232_cov_0.935484_ID_5964
(232 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISFsp17 | ISKra4 | ISKra4 | Frankia sp. | 32 | 0.29 |
| ISMlo1 | IS110 | IS1111 | Mesorhizobium loti | 32 | 0.29 |
| ISSoc10 | IS200/IS605 | Synechococcus sp | 30 | 1.1 | |
| ISPmar3 | IS5 | IS5 | Paracoccus marcusii | 30 | 1.1 |
| ISMno26 | IS110 | IS1111 | Methylobacterium nodulans | 30 | 1.1 |
| ISNisp6 | IS66 | Nitrobacter sp. | 30 | 1.1 | |
| ISCausp2 | IS1595 | ISNha5 | Caulobacter sp. | 30 | 1.1 |
| ISCmi3 | IS30 | Clavibacter michiganensis | 30 | 1.1 | |
| ISBcen13 | IS21 | Burkholderia cenocepacia | 30 | 1.1 | |
| ISBlo2 | IS21 | Bifidobacterium longum | 30 | 1.1 | |
| ISBj3 | IS3 | IS150 | Bradyrhizobium japonicum | 28 | 4.5 |
| ISMyma8 | IS3 | IS407 | Mycobacterium marinum | 28 | 4.5 |
| ISHvo13 | IS4 | ISH8 | Haloferax volcanii | 28 | 4.5 |
| ISPa40 | Tn3 | Pseudomonas aeruginosa | 28 | 4.5 | |
| ISAzs18 | IS66 | Azospirillum sp. | 28 | 4.5 | |
| ISRce2 | IS1182 | Rhodospirillum centenum | 28 | 4.5 | |
| ISGau7 | IS21 | Gemmatimonas aurantiaca | 28 | 4.5 | |
| ISEcB1 | IS3 | IS150 | Escherichia coli | 28 | 4.5 |
| ISRm17 | ISNCY | ISDol1 | Sinorhizobium meliloti | 28 | 4.5 |
| ISRle10 | ISNCY | ISDol1 | Rhizobium leguminosarum | 28 | 4.5 |
| ISMpo10 | Tn3 | Methylobacterium populi | 28 | 4.5 | |
| ISMtsp19 | IS701 | Methylobacterium sp. | 28 | 4.5 | |
| ISArsp6 | Tn3 | Arthrobacter sp. | 28 | 4.5 | |
| ISMex40 | IS5 | IS1031 | Methylobacterium extorquens | 28 | 4.5 |
| ISThsp12 | IS1634 | Thiomonas sp. | 28 | 4.5 | |
| ISCARN42 | IS701 | Metagenomic data from CARNOULES | 28 | 4.5 | |
| ISThsp9 | Tn3 | Thiomonas sp. | 28 | 4.5 | |
| ISSsp4 | IS21 | Sphingomonas sp. | 28 | 4.5 | |
| ISGur10 | IS3 | IS3 | Geobacter uraniumreducens | 28 | 4.5 |
| ISRel2 | IS481 | Rhizobium etli | 28 | 4.5 | |
| ISPa6 | ISNCY | - | Pseudomonas aeruginosa | 28 | 4.5 |
| IS999 | IS3 | IS51 | Mycobacterium avium | 28 | 4.5 |
| IS1676 | IS1380 | - | Rhodococcus erythropolis | 28 | 4.5 |
>ISFsp17
Length = 1693
Score = 32.2 bits (16), Expect = 0.29
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 154 ggccatggccggcggc 169
||||||||||||||||
Sbjct: 410 ggccatggccggcggc 425
>ISMlo1
Length = 1405
Score = 32.2 bits (16), Expect = 0.29
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 199 cggaccgatcggcgca 214
||||||||||||||||
Sbjct: 738 cggaccgatcggcgca 753
>ISSoc10
Length = 1829
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 81 tcgacatggggctgg 95
|||||||||||||||
Sbjct: 1181 tcgacatggggctgg 1195
>ISPmar3
Length = 1282
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 36 ccgtcggcggcctgg 50
|||||||||||||||
Sbjct: 1211 ccgtcggcggcctgg 1197
>ISMno26
Length = 1353
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 216 tccgccggctgctcg 230
|||||||||||||||
Sbjct: 899 tccgccggctgctcg 913
>ISNisp6
Length = 2489
Score = 30.2 bits (15), Expect = 1.1
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 17 gtcatcgcctcgatgatcg 35
|||||||||||| ||||||
Sbjct: 2312 gtcatcgcctcgctgatcg 2330
>ISCausp2
Length = 7915
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 22 cgcctcgatgatcgc 36
|||||||||||||||
Sbjct: 7849 cgcctcgatgatcgc 7835
>ISCmi3
Length = 1459
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 208 cggcgcagtccgccg 222
|||||||||||||||
Sbjct: 823 cggcgcagtccgccg 809
>ISBcen13
Length = 1957
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 134 atgctcgaccgcatc 148
|||||||||||||||
Sbjct: 1784 atgctcgaccgcatc 1798
>ISBlo2
Length = 2455
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 81 tcgacatggggctgg 95
|||||||||||||||
Sbjct: 1984 tcgacatggggctgg 1998
>ISBj3
Length = 1284
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 124 cctcgcgatcatgc 137
||||||||||||||
Sbjct: 500 cctcgcgatcatgc 513
>ISMyma8
Length = 1247
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 176 gcgccgggtcgctg 189
||||||||||||||
Sbjct: 971 gcgccgggtcgctg 984
>ISHvo13
Length = 1395
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 33 tcgccgtcggcggc 46
||||||||||||||
Sbjct: 238 tcgccgtcggcggc 251
>ISPa40
Length = 6592
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 117 tcgtgatcctcgcg 130
||||||||||||||
Sbjct: 443 tcgtgatcctcgcg 430
>ISAzs18
Length = 2633
Score = 28.2 bits (14), Expect = 4.5
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 166 cggcaagacagcgccggg 183
||||| ||||||||||||
Sbjct: 1496 cggcacgacagcgccggg 1479
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 135 tgctcgaccgcatc 148
||||||||||||||
Sbjct: 2498 tgctcgaccgcatc 2511
>ISRce2
Length = 1528
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 72 tcggccggctcgac 85
||||||||||||||
Sbjct: 820 tcggccggctcgac 833
>ISGau7
Length = 2510
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 211 cgcagtccgccggc 224
||||||||||||||
Sbjct: 246 cgcagtccgccggc 259
>ISEcB1
Length = 1441
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 4 tctgtcgatggtgg 17
||||||||||||||
Sbjct: 1046 tctgtcgatggtgg 1059
>ISRm17
Length = 1664
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 34 cgccgtcggcggcc 47
||||||||||||||
Sbjct: 1188 cgccgtcggcggcc 1175
>ISRle10
Length = 1665
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 34 cgccgtcggcggcc 47
||||||||||||||
Sbjct: 1187 cgccgtcggcggcc 1174
>ISMpo10
Length = 4911
Score = 28.2 bits (14), Expect = 4.5
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 126 tcgcgatcatgctcgacc 143
|||||||||||| |||||
Sbjct: 3143 tcgcgatcatgcgcgacc 3160
>ISMtsp19
Length = 1486
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 174 cagcgccgggtcgc 187
||||||||||||||
Sbjct: 154 cagcgccgggtcgc 167
>ISArsp6
Length = 26712
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 105 gtggtctgggcatc 118
||||||||||||||
Sbjct: 19149 gtggtctgggcatc 19136
>ISMex40
Length = 918
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 33 tcgccgtcggcggc 46
||||||||||||||
Sbjct: 417 tcgccgtcggcggc 430
>ISThsp12
Length = 2004
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 195 acaccggaccgatc 208
||||||||||||||
Sbjct: 1653 acaccggaccgatc 1640
>ISCARN42
Length = 1473
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 82 cgacatggggctgg 95
||||||||||||||
Sbjct: 701 cgacatggggctgg 714
>ISThsp9
Length = 6215
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 137 ctcgaccgcatcac 150
||||||||||||||
Sbjct: 4261 ctcgaccgcatcac 4274
>ISSsp4
Length = 2558
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 106 tggtctgggcatcg 119
||||||||||||||
Sbjct: 1539 tggtctgggcatcg 1526
>ISGur10
Length = 1593
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 168 gcaagacagcgccg 181
||||||||||||||
Sbjct: 659 gcaagacagcgccg 672
>ISRel2
Length = 1047
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 45 gcctgggtcagatg 58
||||||||||||||
Sbjct: 169 gcctgggtcagatg 156
>ISPa6
Length = 1329
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 3 gtctgtcgatggtg 16
||||||||||||||
Sbjct: 130 gtctgtcgatggtg 117
>IS999
Length = 1347
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 205 gatcggcgcagtcc 218
||||||||||||||
Sbjct: 1037 gatcggcgcagtcc 1050
>IS1676
Length = 1693
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 33 tcgccgtcggcggc 46
||||||||||||||
Sbjct: 328 tcgccgtcggcggc 341
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_399_length_232_cov_0.858065_ID_5966
(232 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISMaq2 | IS3 | IS2 | Marinobacter aquaeolei | 38 | 0.005 |
| ISAve3 | IS3 | IS2 | Aeromonas veronii | 30 | 1.1 |
| ISAs17 | IS3 | IS2 | Aeromonas salmonicida | 30 | 1.1 |
| ISArsp6 | Tn3 | Arthrobacter sp. | 30 | 1.1 | |
| ISStma5 | IS3 | IS3 | Stenotrophomonas maltophilia | 30 | 1.1 |
| ISPa25 | IS110 | IS1111 | Pseudomonas aeruginosa | 30 | 1.1 |
| IS117 | IS110 | - | Streptomyces coelicolor | 30 | 1.1 |
| ISStau7 | IS1182 | Stigmatella aurantiaca | 28 | 4.5 | |
| ISAar37 | IS3 | IS3 | Arthrobacter arilaitensis | 28 | 4.5 |
| ISMgi4 | IS1182 | Mycobacterium gilvum | 28 | 4.5 | |
| ISMex36 | IS1182 | Methylobacterium extorquens | 28 | 4.5 | |
| ISAzo17 | IS21 | Azoarcus sp. | 28 | 4.5 | |
| ISDge18 | IS200/IS605 | IS1341 | Deinococcus geothermalis | 28 | 4.5 |
| ISTth3 | IS1634 | Thermus thermophilus | 28 | 4.5 | |
| ISGka3 | IS4 | IS231 | Geobacillus kaustophilus | 28 | 4.5 |
| ISPa42 | Tn3 | Pseudomonas aeruginosa | 28 | 4.5 | |
| ISBst1 | IS481 | - | Bacillus stearothermophilus | 28 | 4.5 |
| IS1602 | IS607 | Mycobacterium tuberculosis | 28 | 4.5 |
>ISMaq2
Length = 1319
Score = 38.2 bits (19), Expect = 0.005
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 30 tcgttcaggtacacatagt 48
|||||||||||||||||||
Sbjct: 1155 tcgttcaggtacacatagt 1137
>ISAve3
Length = 1333
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 105 ttttcgatgaacacg 119
|||||||||||||||
Sbjct: 522 ttttcgatgaacacg 508
>ISAs17
Length = 1333
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 105 ttttcgatgaacacg 119
|||||||||||||||
Sbjct: 522 ttttcgatgaacacg 508
>ISArsp6
Length = 26712
Score = 30.2 bits (15), Expect = 1.1
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 122 gtcatcgccaaaggcgttc 140
||||||||||| |||||||
Sbjct: 3866 gtcatcgccaacggcgttc 3848
>ISStma5
Length = 1228
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 84 tggcgcggctcaagc 98
|||||||||||||||
Sbjct: 261 tggcgcggctcaagc 275
>ISPa25
Length = 1410
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 86 gcgcggctcaagcac 100
|||||||||||||||
Sbjct: 957 gcgcggctcaagcac 971
>IS117
Length = 2527
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 147 tcgctgacgcaggac 161
|||||||||||||||
Sbjct: 289 tcgctgacgcaggac 303
>ISStau7
Length = 1716
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 26 gcgctcgttcaggt 39
||||||||||||||
Sbjct: 890 gcgctcgttcaggt 903
>ISAar37
Length = 1309
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 140 cttggcttcgctga 153
||||||||||||||
Sbjct: 473 cttggcttcgctga 460
>ISMgi4
Length = 1772
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 56 cgaatcgcccagca 69
||||||||||||||
Sbjct: 1094 cgaatcgcccagca 1081
>ISMex36
Length = 1467
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 189 ccccaggccccgcc 202
||||||||||||||
Sbjct: 40 ccccaggccccgcc 27
>ISAzo17
Length = 2095
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 1 ggtgacgacgctga 14
||||||||||||||
Sbjct: 562 ggtgacgacgctga 575
>ISDge18
Length = 1388
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 117 acgcggtcatcgcc 130
||||||||||||||
Sbjct: 904 acgcggtcatcgcc 917
>ISTth3
Length = 1682
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 189 ccccaggccccgcc 202
||||||||||||||
Sbjct: 1232 ccccaggccccgcc 1219
>ISGka3
Length = 1605
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 187 caccccaggccccg 200
||||||||||||||
Sbjct: 543 caccccaggccccg 530
>ISPa42
Length = 16941
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 143 ggcttcgctgacgc 156
||||||||||||||
Sbjct: 4578 ggcttcgctgacgc 4565
>ISBst1
Length = 1461
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 27 cgctcgttcaggta 40
||||||||||||||
Sbjct: 1027 cgctcgttcaggta 1014
>IS1602
Length = 2053
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 123 tcatcgccaaaggc 136
||||||||||||||
Sbjct: 1176 tcatcgccaaaggc 1189
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_400_length_232_cov_0.858065_ID_5968
(232 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISAs15 | IS5 | IS903 | Aeromonas salmonicida | 34 | 0.073 |
| ISGvi7 | ISKra4 | ISMich2 | Gloeobacter violaceus | 32 | 0.29 |
| ISSisp2 | IS5 | IS903 | Silicibacter sp. | 32 | 0.29 |
| ISBdo1 | IS1182 | Burkholderia dolosa | 32 | 0.29 | |
| ISFsp12 | ISAzo13 | Frankia sp. | 32 | 0.29 | |
| ISGob3 | IS66 | ISBst12 | Gemmata obscuriglobus | 32 | 0.29 |
| ISBad1 | IS21 | Bifidobacterium adolescentis | 32 | 0.29 | |
| ISNma3 | IS1595 | ISH4 | Natrialba magadii | 30 | 1.1 |
| ISMno32 | IS1182 | Methylobacterium nodulans | 30 | 1.1 | |
| ISSlo1 | IS110 | IS1111 | Shewanella loihica | 30 | 1.1 |
| ISRme12 | IS3 | IS150 | Ralstonia metallidurans | 30 | 1.1 |
| ISNpe28 | IS1595 | ISH4 | Natrinema pellirubrum | 28 | 4.5 |
| ISPa54 | IS5 | IS5 | Pseudomonas aeruginosa | 28 | 4.5 |
| ISXne2 | IS6 | Xenorhabdus nematophila | 28 | 4.5 | |
| ISPfe2 | IS1634 | Paracoccus ferrooxidans | 28 | 4.5 | |
| ISClbo1 | IS1182 | Clostridium bolteae | 28 | 4.5 | |
| ISArsp6 | Tn3 | Arthrobacter sp. | 28 | 4.5 | |
| ISAau5 | ISNCY | Arthrobacter aurescens | 28 | 4.5 | |
| ISRop1 | IS1380 | Rhodococcus opacus | 28 | 4.5 | |
| ISDpr6 | IS1380 | Delta proteobacterium | 28 | 4.5 | |
| ISDpr5 | IS1380 | Delta proteobacterium | 28 | 4.5 | |
| ISAar7 | IS21 | Arthrobacter arilaitensis | 28 | 4.5 | |
| ISMex2 | IS481 | Methylobacterium extorquens | 28 | 4.5 | |
| ISApr4 | IS1595 | ISNwi1 | Alpha proteobacterium | 28 | 4.5 |
| ISFsp6 | IS4 | IS4 | Frankia sp. | 28 | 4.5 |
| ISSp1 | IS1380 | - | Sphingomonas paucimobilis | 28 | 4.5 |
| IS4811 | IS5 | IS1031 | Streptomyces lividans | 28 | 4.5 |
| IS2112 | IS110 | - | Rhodococcus rhodochrous | 28 | 4.5 |
| IS1632 | IS256 | - | Bradyrhizobium japonicum | 28 | 4.5 |
| IS1412 | IS1380 | - | Sphingomonas sp | 28 | 4.5 |
>ISAs15
Length = 1062
Score = 34.2 bits (17), Expect = 0.073
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 84 ggtcgccggctccaccgccag 104
||||||||| |||||||||||
Sbjct: 559 ggtcgccgggtccaccgccag 539
>ISGvi7
Length = 1220
Score = 32.2 bits (16), Expect = 0.29
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 104 gcgacaacgacggcct 119
||||||||||||||||
Sbjct: 690 gcgacaacgacggcct 705
>ISSisp2
Length = 1050
Score = 32.2 bits (16), Expect = 0.29
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 75 cgcaggtgcggtcgcc 90
||||||||||||||||
Sbjct: 750 cgcaggtgcggtcgcc 765
>ISBdo1
Length = 1572
Score = 32.2 bits (16), Expect = 0.29
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 9 ctggcgtagcgatgcc 24
||||||||||||||||
Sbjct: 1315 ctggcgtagcgatgcc 1300
>ISFsp12
Length = 1730
Score = 32.2 bits (16), Expect = 0.29
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 157 gtactgctcggcggcg 172
||||||||||||||||
Sbjct: 1410 gtactgctcggcggcg 1395
>ISGob3
Length = 1597
Score = 32.2 bits (16), Expect = 0.29
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 88 gccggctccaccgcca 103
||||||||||||||||
Sbjct: 1269 gccggctccaccgcca 1254
>ISBad1
Length = 2525
Score = 32.2 bits (16), Expect = 0.29
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 213 cgccggcgaccacggc 228
||||||||||||||||
Sbjct: 615 cgccggcgaccacggc 600
>ISNma3
Length = 1001
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 60 cgccgacgaagacgt 74
|||||||||||||||
Sbjct: 786 cgccgacgaagacgt 800
>ISMno32
Length = 1538
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 112 gacggcctcggcgtg 126
|||||||||||||||
Sbjct: 582 gacggcctcggcgtg 568
>ISSlo1
Length = 1345
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 23 ccgacctgtttgtga 37
|||||||||||||||
Sbjct: 1279 ccgacctgtttgtga 1265
>ISRme12
Length = 1454
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 80 gtgcggtcgccggct 94
|||||||||||||||
Sbjct: 1055 gtgcggtcgccggct 1041
>ISNpe28
Length = 944
Score = 28.2 bits (14), Expect = 4.5
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 60 cgccgacgaagacgtcgc 77
||||||||||||| ||||
Sbjct: 626 cgccgacgaagacatcgc 643
>ISPa54
Length = 1159
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 219 cgaccacggcacca 232
||||||||||||||
Sbjct: 163 cgaccacggcacca 150
>ISXne2
Length = 808
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 187 gatggcgcatggat 200
||||||||||||||
Sbjct: 287 gatggcgcatggat 300
>ISPfe2
Length = 1884
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 160 ctgctcggcggcgc 173
||||||||||||||
Sbjct: 1175 ctgctcggcggcgc 1162
>ISClbo1
Length = 1603
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 87 cgccggctccaccg 100
||||||||||||||
Sbjct: 756 cgccggctccaccg 743
>ISArsp6
Length = 26712
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 33 tgtgaccggttcgg 46
||||||||||||||
Sbjct: 7380 tgtgaccggttcgg 7367
>ISAau5
Length = 3989
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 60 cgccgacgaagacg 73
||||||||||||||
Sbjct: 2161 cgccgacgaagacg 2148
>ISRop1
Length = 4160
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 112 gacggcctcggcgt 125
||||||||||||||
Sbjct: 2641 gacggcctcggcgt 2654
>ISDpr6
Length = 1655
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 219 cgaccacggcacca 232
||||||||||||||
Sbjct: 1103 cgaccacggcacca 1116
>ISDpr5
Length = 1653
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 219 cgaccacggcacca 232
||||||||||||||
Sbjct: 1101 cgaccacggcacca 1114
>ISAar7
Length = 2983
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 103 agcgacaacgacgg 116
||||||||||||||
Sbjct: 649 agcgacaacgacgg 662
>ISMex2
Length = 1031
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 79 ggtgcggtcgccgg 92
||||||||||||||
Sbjct: 553 ggtgcggtcgccgg 540
>ISApr4
Length = 3691
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 45 ggaaagcagcgagc 58
||||||||||||||
Sbjct: 2706 ggaaagcagcgagc 2693
>ISFsp6
Length = 1472
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 54 cgagctcgccgacg 67
||||||||||||||
Sbjct: 806 cgagctcgccgacg 819
>ISSp1
Length = 1646
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 19 gatgccgacctgtt 32
||||||||||||||
Sbjct: 1425 gatgccgacctgtt 1438
>IS4811
Length = 5396
Score = 28.2 bits (14), Expect = 4.5
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 213 cgccggcgaccacggcac 230
|||||| |||||||||||
Sbjct: 4141 cgccggtgaccacggcac 4158
>IS2112
Length = 1415
Score = 28.2 bits (14), Expect = 4.5
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 96 caccgccagcgacaacga 113
||||| ||||||||||||
Sbjct: 1074 caccggcagcgacaacga 1057
>IS1632
Length = 1394
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 63 cgacgaagacgtcg 76
||||||||||||||
Sbjct: 1025 cgacgaagacgtcg 1012
>IS1412
Length = 1656
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 19 gatgccgacctgtt 32
||||||||||||||
Sbjct: 1428 gatgccgacctgtt 1441
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_401_length_232_cov_0.774194_ID_5970
(232 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISEc53 | ISL3 | Escherichia coli | 30 | 1.1 | |
| ISNamo1 | IS5 | ISH1 | Natronomonas moolapensis | 30 | 1.1 |
| ISH1A | IS5 | ISH1 | Halobacterium salinarum | 28 | 4.5 |
| ISPa119 | IS110 | IS1111 | Pseudomonas aeruginosa | 28 | 4.5 |
| ISRhsp8 | IS5 | IS903 | Rhodobacter sphaeroides | 28 | 4.5 |
| ISPfr15 | IS481 | Propionibacterium freudenreichii | 28 | 4.5 | |
| ISApr11 | IS1380 | Alpha proteobacterium | 28 | 4.5 | |
| ISOan2 | IS1380 | Octadecabacter antarcticus | 28 | 4.5 | |
| ISMdi2 | ISL3 | Methylobacterium dichloromethanicum | 28 | 4.5 | |
| ISAnsp5 | IS21 | Anaeromyxobacter sp. | 28 | 4.5 | |
| ISAnsp4 | IS21 | Anaeromyxobacter sp. | 28 | 4.5 | |
| ISCausp2 | IS1595 | ISNha5 | Caulobacter sp. | 28 | 4.5 |
| ISSav3 | IS701 | Streptomyces avermitilis | 28 | 4.5 | |
| ISGka2 | IS110 | Geobacillus kaustophilus | 28 | 4.5 | |
| ISGsu2 | IS5 | Geobacter sulfurreducens | 28 | 4.5 | |
| ISH1 | IS5 | ISH1 | Halobacterium salinarum | 28 | 4.5 |
| IS66 | IS66 | Agrobacterium tumefaciens | 28 | 4.5 |
>ISEc53
Length = 1885
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 155 acgcggggaacatcg 169
|||||||||||||||
Sbjct: 878 acgcggggaacatcg 864
>ISNamo1
Length = 1111
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 207 ccgcctgctccgcca 221
|||||||||||||||
Sbjct: 355 ccgcctgctccgcca 369
>ISH1A
Length = 1122
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 207 ccgcctgctccgcc 220
||||||||||||||
Sbjct: 405 ccgcctgctccgcc 392
>ISPa119
Length = 1378
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 99 tttgcagcgcgccg 112
||||||||||||||
Sbjct: 379 tttgcagcgcgccg 366
>ISRhsp8
Length = 1054
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 116 acggcgccaatggc 129
||||||||||||||
Sbjct: 492 acggcgccaatggc 505
>ISPfr15
Length = 1097
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 17 agctgaggggggag 30
||||||||||||||
Sbjct: 31 agctgaggggggag 44
>ISApr11
Length = 1667
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 181 cttcagcccgttgc 194
||||||||||||||
Sbjct: 552 cttcagcccgttgc 539
>ISOan2
Length = 1655
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 181 cttcagcccgttgc 194
||||||||||||||
Sbjct: 545 cttcagcccgttgc 532
>ISMdi2
Length = 1689
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 195 cggcccaggcgtcc 208
||||||||||||||
Sbjct: 175 cggcccaggcgtcc 188
>ISAnsp5
Length = 2192
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 101 tgcagcgcgccgtg 114
||||||||||||||
Sbjct: 400 tgcagcgcgccgtg 413
>ISAnsp4
Length = 2195
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 101 tgcagcgcgccgtg 114
||||||||||||||
Sbjct: 406 tgcagcgcgccgtg 419
>ISCausp2
Length = 7915
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 148 ttcgacgacgcggg 161
||||||||||||||
Sbjct: 6301 ttcgacgacgcggg 6314
>ISSav3
Length = 1400
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 204 cgtccgcctgctcc 217
||||||||||||||
Sbjct: 711 cgtccgcctgctcc 698
>ISGka2
Length = 1561
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 211 ctgctccgccatgg 224
||||||||||||||
Sbjct: 964 ctgctccgccatgg 951
>ISGsu2
Length = 1319
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 45 ggatcatcagcagt 58
||||||||||||||
Sbjct: 295 ggatcatcagcagt 282
>ISH1
Length = 1118
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 207 ccgcctgctccgcc 220
||||||||||||||
Sbjct: 405 ccgcctgctccgcc 392
>IS66
Length = 2556
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 201 aggcgtccgcctgc 214
||||||||||||||
Sbjct: 1869 aggcgtccgcctgc 1856
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_402_length_232_cov_0.670968_ID_5972
(232 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISRsp13 | IS5 | Rhizhobium sp. | 34 | 0.073 | |
| ISHne1 | IS3 | IS51 | Hyphomonas neptunium | 32 | 0.29 |
| ISBvi7 | IS3 | IS407 | Burkholderia vietnamiensis | 30 | 1.1 |
| ISSiac5 | ISLre2 | Singulisphaera acidiphila | 30 | 1.1 | |
| ISMgi2 | IS1182 | Mycobacterium gilvum | 30 | 1.1 | |
| ISMex28 | IS5 | IS5 | Methylobacterium extorquens | 30 | 1.1 |
| IS1557 | ISL3 | Mycobacterium tuberculosis | 30 | 1.1 | |
| ISEc61 | IS5 | IS1031 | Escherichia coli | 28 | 4.5 |
| TnShfr1 | Tn3 | Shewanella frigidimarina | 28 | 4.5 | |
| ISBte1 | ISKra4 | ISAzba1 | Burkholderia terrae | 28 | 4.5 |
| ISPa36 | IS21 | Pseudomonas aeruginosa | 28 | 4.5 | |
| ISPha2 | IS5 | Paracoccus halophilus | 28 | 4.5 | |
| ISRssp11 | IS5 | Roseovarius sp. | 28 | 4.5 | |
| ISRsp17 | ISNCY | ISDol1 | Rhizobium sp. | 28 | 4.5 |
| ISRle10 | ISNCY | ISDol1 | Rhizobium leguminosarum | 28 | 4.5 |
| ISPph3 | IS1380 | Pelodictyon phaeoclathratiforme | 28 | 4.5 | |
| ISAde1 | IS66 | Anaeromyxobacter dehalogenans | 28 | 4.5 | |
| ISAnsp5 | IS21 | Anaeromyxobacter sp. | 28 | 4.5 | |
| ISCARN49 | IS21 | Metagenomic data from CARNOULES | 28 | 4.5 | |
| ISKpn7 | IS21 | Klebsiella pneumoniae | 28 | 4.5 | |
| ISXau1 | IS3 | IS407 | Xanthobacter autotrophicus | 28 | 4.5 |
| ISMpe1 | IS3 | IS3 | Methylibium petroleiphilum | 28 | 4.5 |
| ISRme13 | IS3 | IS3 | Ralstonia metallidurans | 28 | 4.5 |
| ISTth2 | IS4 | IS10 | Thermus thermophilus | 28 | 4.5 |
| ISBcen4 | IS110 | IS1111 | Burkholderia cenocepacia | 28 | 4.5 |
| ISHsp2 | IS630 | Halomonas sp. | 28 | 4.5 |
>ISRsp13
Length = 1353
Score = 34.2 bits (17), Expect = 0.073
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 90 ggacttcgtcgccgaac 106
|||||||||||||||||
Sbjct: 980 ggacttcgtcgccgaac 996
>ISHne1
Length = 1324
Score = 32.2 bits (16), Expect = 0.29
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 211 gcgccgtgcccgctcg 226
||||||||||||||||
Sbjct: 719 gcgccgtgcccgctcg 734
>ISBvi7
Length = 1177
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 90 ggacttcgtcgccga 104
|||||||||||||||
Sbjct: 659 ggacttcgtcgccga 673
>ISSiac5
Length = 1429
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 95 tcgtcgccgaacagg 109
|||||||||||||||
Sbjct: 1047 tcgtcgccgaacagg 1033
>ISMgi2
Length = 1770
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 202 cccgtcctggcgccg 216
|||||||||||||||
Sbjct: 944 cccgtcctggcgccg 930
>ISMex28
Length = 1310
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 156 tccccagccacgctg 170
|||||||||||||||
Sbjct: 38 tccccagccacgctg 24
>IS1557
Length = 1509
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 212 cgccgtgcccgctcg 226
|||||||||||||||
Sbjct: 1030 cgccgtgcccgctcg 1016
>ISEc61
Length = 954
Score = 28.2 bits (14), Expect = 4.5
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 96 cgtcgccgaacaggtggc 113
||||| ||||||||||||
Sbjct: 670 cgtcggcgaacaggtggc 653
>TnShfr1
Length = 5131
Score = 28.2 bits (14), Expect = 4.5
Identities = 23/26 (88%)
Strand = Plus / Plus
Query: 42 tgtcggaactgcgaaacgcgctgcgc 67
||||||||||| ||||||||||||
Sbjct: 3513 tgtcggaactgaagaacgcgctgcgc 3538
>ISBte1
Length = 2143
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 75 cggccaggcggatg 88
||||||||||||||
Sbjct: 1367 cggccaggcggatg 1354
>ISPa36
Length = 2468
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 60 cgctgcgcatgcag 73
||||||||||||||
Sbjct: 1622 cgctgcgcatgcag 1635
>ISPha2
Length = 1387
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 91 gacttcgtcgccga 104
||||||||||||||
Sbjct: 989 gacttcgtcgccga 1002
>ISRssp11
Length = 1356
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 91 gacttcgtcgccga 104
||||||||||||||
Sbjct: 983 gacttcgtcgccga 996
>ISRsp17
Length = 1664
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 133 cttgaagtggtcga 146
||||||||||||||
Sbjct: 1408 cttgaagtggtcga 1395
>ISRle10
Length = 1665
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 133 cttgaagtggtcga 146
||||||||||||||
Sbjct: 1408 cttgaagtggtcga 1395
>ISPph3
Length = 1810
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 30 aacggaacagcttg 43
||||||||||||||
Sbjct: 504 aacggaacagcttg 491
>ISAde1
Length = 2957
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 102 cgaacaggtggccc 115
||||||||||||||
Sbjct: 599 cgaacaggtggccc 586
>ISAnsp5
Length = 2192
Score = 28.2 bits (14), Expect = 4.5
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 88 gaggacttcgtcgccgaa 105
|||||| |||||||||||
Sbjct: 2005 gaggacctcgtcgccgaa 1988
>ISCARN49
Length = 2630
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 75 cggccaggcggatg 88
||||||||||||||
Sbjct: 513 cggccaggcggatg 500
>ISKpn7
Length = 1956
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 201 ccccgtcctggcgc 214
||||||||||||||
Sbjct: 1180 ccccgtcctggcgc 1193
>ISXau1
Length = 1272
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 91 gacttcgtcgccga 104
||||||||||||||
Sbjct: 691 gacttcgtcgccga 704
>ISMpe1
Length = 1295
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 57 acgcgctgcgcatg 70
||||||||||||||
Sbjct: 895 acgcgctgcgcatg 908
>ISRme13
Length = 1288
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 57 acgcgctgcgcatg 70
||||||||||||||
Sbjct: 887 acgcgctgcgcatg 900
>ISTth2
Length = 1184
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 79 caggcggatgagga 92
||||||||||||||
Sbjct: 642 caggcggatgagga 629
>ISBcen4
Length = 1349
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 142 gtcgatgtcgacaa 155
||||||||||||||
Sbjct: 631 gtcgatgtcgacaa 618
>ISHsp2
Length = 1078
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 95 tcgtcgccgaacag 108
||||||||||||||
Sbjct: 349 tcgtcgccgaacag 362
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_403_length_231_cov_0.948052_ID_5974
(231 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISArsp6 | Tn3 | Arthrobacter sp. | 32 | 0.29 | |
| ISMex38 | Tn3 | Methylobacterium extorquens | 30 | 1.1 | |
| ISRta4 | IS110 | Ralstonia taiwanensis | 30 | 1.1 | |
| ISCfr1 | IS1182 | Citrobacter freundii | 30 | 1.1 | |
| ISRm10 | IS630 | - | Sinorhizobium meliloti | 30 | 1.1 |
| ISMt2 | IS21 | - | Mycobacterium tuberculosis | 30 | 1.1 |
| ISPsy33 | IS4 | IS4 | Pseudomonas syringae | 28 | 4.5 |
| ISHaha9 | IS200/IS605 | IS1341 | Halobacillus halophilus | 28 | 4.5 |
| TnEc1 | Tn3 | Escherichia coli | 28 | 4.5 | |
| ISSdi1 | IS1182 | Streptomyces diastaticus | 28 | 4.5 | |
| ISArsp4 | IS256 | Arthrobacter sp. | 28 | 4.5 | |
| ISAnsp4 | IS21 | Anaeromyxobacter sp. | 28 | 4.5 | |
| ISStma5 | IS3 | IS3 | Stenotrophomonas maltophilia | 28 | 4.5 |
| ISCARN54 | IS3 | IS3 | Metagenomic data from CARNOULES | 28 | 4.5 |
| ISAfe10 | IS607 | Acidithiobacillus ferrooxidans | 28 | 4.5 | |
| ISRhru2 | IS66 | ISBst12 | Rhodospirillum rubrum | 28 | 4.5 |
| ISSpu5 | IS21 | Shewanella putrefaciens | 28 | 4.5 | |
| ISRhosp8 | IS110 | Rhodococcus sp. | 28 | 4.5 | |
| ISSav2 | IS701 | Streptomyces avermitilis | 28 | 4.5 | |
| ISFsp5 | IS4 | IS4 | Frankia sp. | 28 | 4.5 |
| IS609 | IS200/IS605 | Escherichia coli | 28 | 4.5 | |
| ISFsp1 | ISL3 | Frankia sp. | 28 | 4.5 | |
| ISBli2 | IS256 | - | Brevibacterium linens | 28 | 4.5 |
| IS1271 | IS4 | IS4 | Enterobacter agglomerans | 28 | 4.5 |
| IS1202 | ISNCY | IS1202 | Streptococcus pneumoniae | 28 | 4.5 |
>ISArsp6
Length = 26712
Score = 32.2 bits (16), Expect = 0.29
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 62 ccagccagccggtcat 77
||||||||||||||||
Sbjct: 21507 ccagccagccggtcat 21522
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 40 cacccggcccgcgcc 54
|||||||||||||||
Sbjct: 10476 cacccggcccgcgcc 10462
>ISMex38
Length = 3841
Score = 30.2 bits (15), Expect = 1.1
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 28 cacgtccatgaacacccgg 46
||||||| |||||||||||
Sbjct: 552 cacgtccgtgaacacccgg 570
>ISRta4
Length = 1915
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 85 gccggcgtagccggc 99
|||||||||||||||
Sbjct: 1887 gccggcgtagccggc 1873
>ISCfr1
Length = 1617
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 24 cttccacgtccatga 38
|||||||||||||||
Sbjct: 787 cttccacgtccatga 773
>ISRm10
Length = 1047
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 207 tcttcttcggcttcg 221
|||||||||||||||
Sbjct: 372 tcttcttcggcttcg 386
>ISMt2
Length = 2645
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 41 acccggcccgcgcca 55
|||||||||||||||
Sbjct: 916 acccggcccgcgcca 930
>ISPsy33
Length = 1429
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 1 gaagtccgtgccag 14
||||||||||||||
Sbjct: 476 gaagtccgtgccag 463
>ISHaha9
Length = 1417
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 116 tagcttatgaagat 129
||||||||||||||
Sbjct: 290 tagcttatgaagat 303
>TnEc1
Length = 3854
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 184 gctgccggtgtggc 197
||||||||||||||
Sbjct: 2065 gctgccggtgtggc 2052
>ISSdi1
Length = 1789
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 60 ggccagccagccgg 73
||||||||||||||
Sbjct: 645 ggccagccagccgg 632
>ISArsp4
Length = 1400
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 94 gccggccgaatcgt 107
||||||||||||||
Sbjct: 298 gccggccgaatcgt 285
>ISAnsp4
Length = 2195
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 87 cggcgtagccggcc 100
||||||||||||||
Sbjct: 1754 cggcgtagccggcc 1741
>ISStma5
Length = 1228
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 60 ggccagccagccgg 73
||||||||||||||
Sbjct: 118 ggccagccagccgg 131
>ISCARN54
Length = 1624
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 43 ccggcccgcgccaa 56
||||||||||||||
Sbjct: 1514 ccggcccgcgccaa 1527
>ISAfe10
Length = 2232
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 52 gccaaagtggccag 65
||||||||||||||
Sbjct: 1184 gccaaagtggccag 1197
>ISRhru2
Length = 1443
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 206 gtcttcttcggctt 219
||||||||||||||
Sbjct: 198 gtcttcttcggctt 185
>ISSpu5
Length = 2556
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 86 ccggcgtagccggc 99
||||||||||||||
Sbjct: 1901 ccggcgtagccggc 1888
>ISRhosp8
Length = 1439
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 37 gaacacccggcccg 50
||||||||||||||
Sbjct: 1188 gaacacccggcccg 1201
>ISSav2
Length = 1938
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 81 ggcggccggcgtag 94
||||||||||||||
Sbjct: 1053 ggcggccggcgtag 1040
>ISFsp5
Length = 1617
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 186 tgccggtgtggcgc 199
||||||||||||||
Sbjct: 145 tgccggtgtggcgc 158
>IS609
Length = 1748
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 18 caatgccttccacg 31
||||||||||||||
Sbjct: 437 caatgccttccacg 450
>ISFsp1
Length = 1732
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 60 ggccagccagccgg 73
||||||||||||||
Sbjct: 678 ggccagccagccgg 665
>ISBli2
Length = 1467
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 211 cttcggcttcgatg 224
||||||||||||||
Sbjct: 245 cttcggcttcgatg 232
>IS1271
Length = 1414
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 123 tgaagatgccatcc 136
||||||||||||||
Sbjct: 376 tgaagatgccatcc 389
>IS1202
Length = 1747
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 144 cagccctcatgcct 157
||||||||||||||
Sbjct: 612 cagccctcatgcct 625
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_404_length_231_cov_0.805195_ID_5976
(231 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISBte2 | ISKra4 | ISAzba1 | Burkholderia terrae | 36 | 0.018 |
| ISAzs23 | IS3 | IS3 | Azospirillum sp. | 34 | 0.073 |
| ISTni2 | IS481 | Thioalkalivibrio nitratireducens | 32 | 0.29 | |
| ISAzo1 | IS1182 | Azoarcus sp. | 32 | 0.29 | |
| ISRel15 | IS66 | Rhizobium etli | 30 | 1.1 | |
| ISAzo14 | IS1634 | Azoarcus sp. | 30 | 1.1 | |
| IS1N | IS1 | - | Shigella dysenteriae | 30 | 1.1 |
| IS298 | IS5 | IS427 | Caulobacter crescentus | 30 | 1.1 |
| ISMdi15 | IS200/IS605 | IS1341 | Methylobacterium dichloromethanicum | 28 | 4.5 |
| ISHla20 | IS200/IS605 | IS1341 | Halorubrum lacusprofundi | 28 | 4.5 |
| ISLho1 | ISLre2 | Lactobacillus hokkaidonensis | 28 | 4.5 | |
| ISBith1 | IS256 | IS1249 | Bifidobacterium thermophilum | 28 | 4.5 |
| ISPa38 | Tn3 | Pseudomonas aeruginosa | 28 | 4.5 | |
| ISSro1 | IS5 | ISL2 | Streptomyces roseosporus | 28 | 4.5 |
| ISPmar1 | IS6 | Paracoccus marcusii | 28 | 4.5 | |
| ISFsp12 | ISAzo13 | Frankia sp. | 28 | 4.5 | |
| ISMno10 | IS1182 | Methylobacterium nodulans | 28 | 4.5 | |
| ISMch5 | IS3 | IS51 | Methylobacterium chloromethanicum | 28 | 4.5 |
| ISMdi18 | IS1595 | ISNwi1 | Methylobacterium dichloromethanicum | 28 | 4.5 |
| ISAisp4 | IS110 | Acidovorax sp. | 28 | 4.5 | |
| ISCARN58 | IS21 | Metagenomic data from CARNOULES | 28 | 4.5 | |
| ISRssp5 | IS5 | IS903 | Roseovarius sp. | 28 | 4.5 |
| ISPst4 | IS3 | IS51 | Pseudomonas stutzeri | 28 | 4.5 |
| IS31831 | ISL3 | - | Corynebacterium glutamicum | 28 | 4.5 |
| IS1207 | ISL3 | - | Corynebacterium glutamicum | 28 | 4.5 |
>ISBte2
Length = 1517
Score = 36.2 bits (18), Expect = 0.018
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 159 aggaactcgcgcatcatg 176
||||||||||||||||||
Sbjct: 535 aggaactcgcgcatcatg 518
>ISAzs23
Length = 1596
Score = 34.2 bits (17), Expect = 0.073
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 61 gacagcggcgcaggccg 77
|||||||||||||||||
Sbjct: 614 gacagcggcgcaggccg 598
>ISTni2
Length = 3451
Score = 32.2 bits (16), Expect = 0.29
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 192 ttttcgggcaggcggg 207
||||||||||||||||
Sbjct: 2760 ttttcgggcaggcggg 2745
>ISAzo1
Length = 1545
Score = 32.2 bits (16), Expect = 0.29
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 163 actcgcgcatcatgaa 178
||||||||||||||||
Sbjct: 858 actcgcgcatcatgaa 873
>ISRel15
Length = 2497
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 143 gttgctgtcgagctc 157
|||||||||||||||
Sbjct: 2247 gttgctgtcgagctc 2233
>ISAzo14
Length = 1925
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 85 cccggtgcaggatca 99
|||||||||||||||
Sbjct: 1652 cccggtgcaggatca 1638
>IS1N
Length = 766
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 107 gttgctcatgctgat 121
|||||||||||||||
Sbjct: 342 gttgctcatgctgat 356
>IS298
Length = 845
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 121 tcgacaaggtgtcgc 135
|||||||||||||||
Sbjct: 717 tcgacaaggtgtcgc 703
>ISMdi15
Length = 1344
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 82 gcgcccggtgcagg 95
||||||||||||||
Sbjct: 194 gcgcccggtgcagg 181
>ISHla20
Length = 1529
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 141 tcgttgctgtcgag 154
||||||||||||||
Sbjct: 1333 tcgttgctgtcgag 1320
>ISLho1
Length = 1547
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 141 tcgttgctgtcgag 154
||||||||||||||
Sbjct: 571 tcgttgctgtcgag 584
>ISBith1
Length = 1350
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 152 gagctcaaggaact 165
||||||||||||||
Sbjct: 728 gagctcaaggaact 741
>ISPa38
Length = 6455
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 64 agcggcgcaggccg 77
||||||||||||||
Sbjct: 1198 agcggcgcaggccg 1211
>ISSro1
Length = 897
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 204 cgggtgaggcaggc 217
||||||||||||||
Sbjct: 629 cgggtgaggcaggc 616
>ISPmar1
Length = 821
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 89 gtgcaggatcacgt 102
||||||||||||||
Sbjct: 134 gtgcaggatcacgt 121
>ISFsp12
Length = 1730
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 199 gcaggcgggtgagg 212
||||||||||||||
Sbjct: 1558 gcaggcgggtgagg 1545
>ISMno10
Length = 1749
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 82 gcgcccggtgcagg 95
||||||||||||||
Sbjct: 877 gcgcccggtgcagg 890
>ISMch5
Length = 1240
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 205 gggtgaggcaggcg 218
||||||||||||||
Sbjct: 187 gggtgaggcaggcg 200
>ISMdi18
Length = 3479
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 63 cagcggcgcaggcc 76
||||||||||||||
Sbjct: 218 cagcggcgcaggcc 205
>ISAisp4
Length = 1614
Score = 28.2 bits (14), Expect = 4.5
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 61 gacagcggcgcaggccgt 78
|||| |||||||||||||
Sbjct: 381 gacaacggcgcaggccgt 364
>ISCARN58
Length = 2436
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 111 ctcatgctgatcga 124
||||||||||||||
Sbjct: 2099 ctcatgctgatcga 2112
>ISRssp5
Length = 1047
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 76 cgttgcgcgcccgg 89
||||||||||||||
Sbjct: 769 cgttgcgcgcccgg 756
>ISPst4
Length = 1312
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 114 atgctgatcgacaa 127
||||||||||||||
Sbjct: 394 atgctgatcgacaa 381
>IS31831
Length = 1453
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 158 aaggaactcgcgca 171
||||||||||||||
Sbjct: 1225 aaggaactcgcgca 1238
>IS1207
Length = 1453
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 158 aaggaactcgcgca 171
||||||||||||||
Sbjct: 1225 aaggaactcgcgca 1238
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_405_length_231_cov_0.694805_ID_5978
(231 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISArsp6 | Tn3 | Arthrobacter sp. | 32 | 0.29 | |
| ISAar44 | IS3 | IS3 | Arthrobacter arilaitensis | 32 | 0.29 |
| ISSiac1 | IS701 | Singulisphaera acidiphila | 32 | 0.29 | |
| ISTha3 | IS91 | Thauera sp. | 30 | 1.1 | |
| TnAs2 | Tn3 | Aeromonas salmonicida | 30 | 1.1 | |
| ISBxe5 | IS5 | Burkholderia xenovorans | 30 | 1.1 | |
| ISBusp3 | IS5 | Burkholderia sp. | 30 | 1.1 | |
| ISButh5 | IS5 | Burkholderia thailandensis | 30 | 1.1 | |
| ISBph2 | IS5 | Burkholderia phymatum | 30 | 1.1 | |
| ISButh6 | IS5 | Burkholderia thailandensis | 30 | 1.1 | |
| ISCARN105 | IS3 | IS3 | Metagenomic data from CARNOULES | 30 | 1.1 |
| ISCARN104 | IS66 | Metagenomic data from CARNOULES | 30 | 1.1 | |
| ISCARN18 | IS110 | IS1111 | Metagenomic data from CARNOULES | 30 | 1.1 |
| ISAfe5 | IS3 | IS3 | Acidithiobacillus ferrooxidans | 30 | 1.1 |
| ISAfe4 | IS66 | Acidithiobacillus ferrooxidans | 30 | 1.1 | |
| ISBusp2 | IS5 | IS5 | Burkholderia sp. | 30 | 1.1 |
| ISFsp10 | IS66 | ISBst12 | Frankia sp. | 30 | 1.1 |
| ISXo2 | IS1595 | IS1595 | Xanthomomas oryzae | 30 | 1.1 |
| IS1086 | IS30 | - | Ralstonia metallidurans | 30 | 1.1 |
| TnAs3 | Tn3 | Aeromonas salmonicida | 28 | 4.5 | |
| ISAeme24 | IS66 | ISBst12 | Aeromonas media | 28 | 4.5 |
| ISAeme23 | IS66 | ISBst12 | Aeromonas media | 28 | 4.5 |
| ISHth3 | IS4 | IS4Sa | Halococcus thailandensis | 28 | 4.5 |
| ISIde1 | ISL3 | Ideonella dechloratans | 28 | 4.5 | |
| ISSiac5 | ISLre2 | Singulisphaera acidiphila | 28 | 4.5 | |
| ISThio1 | ISKra4 | ISKra4 | Thiorhodovibrio sp. | 28 | 4.5 |
| ISMlu11 | IS256 | Micrococcus luteus | 28 | 4.5 | |
| ISRhba5 | IS5 | IS903 | Rhodobacterales bacterium | 28 | 4.5 |
| ISUnCu14 | IS66 | Uncultured bacterium | 28 | 4.5 | |
| ISRssp11 | IS5 | Roseovarius sp. | 28 | 4.5 | |
| ISMpo10 | Tn3 | Methylobacterium populi | 28 | 4.5 | |
| ISMtsp15 | IS481 | Methylobacterium sp. | 28 | 4.5 | |
| ISMno13 | IS66 | Methylobacterium nodulans | 28 | 4.5 | |
| ISPfr8 | ISL3 | Propionibacterium freudenreichii | 28 | 4.5 | |
| ISMch8 | IS5 | IS5 | Methylobacterium chloromethanicum | 28 | 4.5 |
| ISApr11 | IS1380 | Alpha proteobacterium | 28 | 4.5 | |
| ISMex28 | IS5 | IS5 | Methylobacterium extorquens | 28 | 4.5 |
| ISMex26 | ISL3 | Methylobacterium extorquens | 28 | 4.5 | |
| ISMdi4 | IS481 | Methylobacterium dichloromethanicum | 28 | 4.5 | |
| ISMex41 | IS630 | Methylobacterium extorquens | 28 | 4.5 | |
| ISStma11 | ISL3 | Stenotrophomonas maltophilia | 28 | 4.5 | |
| ISMex22 | Tn3 | Methylobacterium extorquens | 28 | 4.5 | |
| ISCARN45 | IS256 | Metagenomic data from CARNOULES | 28 | 4.5 | |
| ISNisp6 | IS66 | Nitrobacter sp. | 28 | 4.5 | |
| ISAli10 | IS66 | Azospirillum lipoferum | 28 | 4.5 | |
| ISAli2 | IS630 | Azospirillum lipoferum | 28 | 4.5 | |
| ISStau2 | IS66 | ISBst12 | Stigmatella aurantiaca | 28 | 4.5 |
| ISMac24 | IS66 | ISBst12 | Methanosarcina acetivorans | 28 | 4.5 |
| ISMsm4 | ISL3 | Mycobacterium smegmatis | 28 | 4.5 | |
| ISSfr2 | IS110 | IS1111 | Ensifer fredii | 28 | 4.5 |
| ISSav2 | IS701 | Streptomyces avermitilis | 28 | 4.5 | |
| ISAzvi8 | IS701 | Azotobacter vinelandii | 28 | 4.5 | |
| ISEc12 | IS21 | Escherichia coli | 28 | 4.5 | |
| IS1663 | IS110 | Bordetella pertussis | 28 | 4.5 | |
| ISMlo2 | IS110 | IS1111 | Mesorhizobium loti | 28 | 4.5 |
| ISPsy4 | IS21 | Pseudomonas syringae | 28 | 4.5 | |
| ISRsp1 | IS66 | - | Rhizobium sp. | 28 | 4.5 |
| IS1650 | IS5 | IS427 | Streptomyces coelicolor | 28 | 4.5 |
| IS1549 | IS1634 | - | Mycobacterium smegmatis | 28 | 4.5 |
>ISArsp6
Length = 26712
Score = 32.2 bits (16), Expect = 0.29
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 5 gctgacgccgccgctc 20
||||||||||||||||
Sbjct: 11643 gctgacgccgccgctc 11658
>ISAar44
Length = 1599
Score = 32.2 bits (16), Expect = 0.29
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 166 gcatgccgaccgcggc 181
||||||||||||||||
Sbjct: 1118 gcatgccgaccgcggc 1133
>ISSiac1
Length = 1358
Score = 32.2 bits (16), Expect = 0.29
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 179 ggcggcggtgaggaag 194
||||||||||||||||
Sbjct: 310 ggcggcggtgaggaag 295
>ISTha3
Length = 2424
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 131 gccgtagagccagcg 145
|||||||||||||||
Sbjct: 1106 gccgtagagccagcg 1120
>TnAs2
Length = 8650
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 71 cgccgtctggatcag 85
|||||||||||||||
Sbjct: 3212 cgccgtctggatcag 3198
>ISBxe5
Length = 1335
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 157 gctccatcagcatgc 171
|||||||||||||||
Sbjct: 345 gctccatcagcatgc 331
>ISBusp3
Length = 1349
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 157 gctccatcagcatgc 171
|||||||||||||||
Sbjct: 335 gctccatcagcatgc 321
>ISButh5
Length = 1350
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 157 gctccatcagcatgc 171
|||||||||||||||
Sbjct: 336 gctccatcagcatgc 322
>ISBph2
Length = 1335
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 157 gctccatcagcatgc 171
|||||||||||||||
Sbjct: 345 gctccatcagcatgc 331
>ISButh6
Length = 1349
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 157 gctccatcagcatgc 171
|||||||||||||||
Sbjct: 335 gctccatcagcatgc 321
>ISCARN105
Length = 1661
Score = 30.2 bits (15), Expect = 1.1
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 53 cgggccgaagatcacgcgc 71
|||| ||||||||||||||
Sbjct: 1469 cggggcgaagatcacgcgc 1487
>ISCARN104
Length = 2483
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 71 cgccgtctggatcag 85
|||||||||||||||
Sbjct: 601 cgccgtctggatcag 615
>ISCARN18
Length = 1561
Score = 30.2 bits (15), Expect = 1.1
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 197 caccggcacggcggcgatc 215
||||| |||||||||||||
Sbjct: 896 caccgccacggcggcgatc 914
>ISAfe5
Length = 1658
Score = 30.2 bits (15), Expect = 1.1
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 53 cgggccgaagatcacgcgc 71
|||| ||||||||||||||
Sbjct: 1466 cggggcgaagatcacgcgc 1484
>ISAfe4
Length = 2477
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 71 cgccgtctggatcag 85
|||||||||||||||
Sbjct: 604 cgccgtctggatcag 618
>ISBusp2
Length = 1349
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 157 gctccatcagcatgc 171
|||||||||||||||
Sbjct: 335 gctccatcagcatgc 321
>ISFsp10
Length = 1713
Score = 30.2 bits (15), Expect = 1.1
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 198 accggcacggcggcgatca 216
|||||| ||||||||||||
Sbjct: 849 accggcgcggcggcgatca 831
>ISXo2
Length = 1070
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 67 cgcgcgccgtctgga 81
|||||||||||||||
Sbjct: 692 cgcgcgccgtctgga 706
>IS1086
Length = 1106
Score = 30.2 bits (15), Expect = 1.1
Identities = 21/23 (91%)
Strand = Plus / Minus
Query: 113 cagggtttcgagcgggcggccgt 135
|||||||| | ||||||||||||
Sbjct: 1000 cagggttttgcgcgggcggccgt 978
>TnAs3
Length = 18735
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 72 gccgtctggatcag 85
||||||||||||||
Sbjct: 3241 gccgtctggatcag 3228
>ISAeme24
Length = 1557
Score = 28.2 bits (14), Expect = 4.5
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 13 cgccgctcatccatgccg 30
||||| ||||||||||||
Sbjct: 777 cgccgatcatccatgccg 794
>ISAeme23
Length = 1557
Score = 28.2 bits (14), Expect = 4.5
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 13 cgccgctcatccatgccg 30
||||| ||||||||||||
Sbjct: 777 cgccgatcatccatgccg 794
>ISHth3
Length = 1472
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 39 acctcgacgttctg 52
||||||||||||||
Sbjct: 857 acctcgacgttctg 844
>ISIde1
Length = 1448
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 35 ggccacctcgacgt 48
||||||||||||||
Sbjct: 533 ggccacctcgacgt 520
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 202 gcacggcggcgatc 215
||||||||||||||
Sbjct: 707 gcacggcggcgatc 720
>ISSiac5
Length = 1429
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 205 cggcggcgatcacg 218
||||||||||||||
Sbjct: 377 cggcggcgatcacg 364
>ISThio1
Length = 1756
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 146 gatgacggtgcgct 159
||||||||||||||
Sbjct: 1031 gatgacggtgcgct 1018
>ISMlu11
Length = 1434
Score = 28.2 bits (14), Expect = 4.5
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 172 cgaccgcggcggcggtga 189
|||||| |||||||||||
Sbjct: 1193 cgaccgaggcggcggtga 1210
>ISRhba5
Length = 1053
Score = 28.2 bits (14), Expect = 4.5
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 105 gtggcgagcagggtttcg 122
|||||| |||||||||||
Sbjct: 791 gtggcgcgcagggtttcg 774
>ISUnCu14
Length = 2442
Score = 28.2 bits (14), Expect = 4.5
Identities = 20/22 (90%)
Strand = Plus / Plus
Query: 166 gcatgccgaccgcggcggcggt 187
|||||||||||| |||| ||||
Sbjct: 1402 gcatgccgaccgaggcgacggt 1423
>ISRssp11
Length = 1356
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 102 caggtggcgagcag 115
||||||||||||||
Sbjct: 1254 caggtggcgagcag 1241
>ISMpo10
Length = 4911
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 109 cgagcagggtttcg 122
||||||||||||||
Sbjct: 1975 cgagcagggtttcg 1962
>ISMtsp15
Length = 1122
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 172 cgaccgcggcggcg 185
||||||||||||||
Sbjct: 491 cgaccgcggcggcg 504
>ISMno13
Length = 2459
Score = 28.2 bits (14), Expect = 4.5
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 174 accgcggcggcggtgagg 191
|||||| |||||||||||
Sbjct: 1145 accgcgccggcggtgagg 1162
>ISPfr8
Length = 1436
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 96 atgccccaggtggc 109
||||||||||||||
Sbjct: 1102 atgccccaggtggc 1089
>ISMch8
Length = 1494
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 205 cggcggcgatcacg 218
||||||||||||||
Sbjct: 1315 cggcggcgatcacg 1328
>ISApr11
Length = 1667
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 3 gtgctgacgccgcc 16
||||||||||||||
Sbjct: 791 gtgctgacgccgcc 804
>ISMex28
Length = 1310
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 195 gccaccggcacggc 208
||||||||||||||
Sbjct: 775 gccaccggcacggc 788
>ISMex26
Length = 1676
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 173 gaccgcggcggcgg 186
||||||||||||||
Sbjct: 707 gaccgcggcggcgg 720
>ISMdi4
Length = 1053
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 200 cggcacggcggcga 213
||||||||||||||
Sbjct: 614 cggcacggcggcga 601
Score = 28.2 bits (14), Expect = 4.5
Identities = 23/26 (88%)
Strand = Plus / Minus
Query: 112 gcagggtttcgagcgggcggccgtag 137
||||||| | |||| |||||||||||
Sbjct: 957 gcagggtcttgagccggcggccgtag 932
>ISMex41
Length = 1048
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 194 ggccaccggcacgg 207
||||||||||||||
Sbjct: 223 ggccaccggcacgg 236
>ISStma11
Length = 4621
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 59 gaagatcacgcgcg 72
||||||||||||||
Sbjct: 1406 gaagatcacgcgcg 1419
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 80 gatcagcaccagcg 93
||||||||||||||
Sbjct: 3818 gatcagcaccagcg 3831
>ISMex22
Length = 3864
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 5 gctgacgccgccgc 18
||||||||||||||
Sbjct: 3135 gctgacgccgccgc 3122
>ISCARN45
Length = 1430
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 145 ggatgacggtgcgc 158
||||||||||||||
Sbjct: 451 ggatgacggtgcgc 464
>ISNisp6
Length = 2489
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 172 cgaccgcggcggcg 185
||||||||||||||
Sbjct: 384 cgaccgcggcggcg 371
>ISAli10
Length = 2584
Score = 28.2 bits (14), Expect = 4.5
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 67 cgcgcgccgtctggatca 84
||||| ||||||||||||
Sbjct: 1424 cgcgcaccgtctggatca 1407
>ISAli2
Length = 1171
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 202 gcacggcggcgatc 215
||||||||||||||
Sbjct: 211 gcacggcggcgatc 198
>ISStau2
Length = 1585
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 199 ccggcacggcggcg 212
||||||||||||||
Sbjct: 1250 ccggcacggcggcg 1263
>ISMac24
Length = 1534
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 135 tagagccagcggat 148
||||||||||||||
Sbjct: 1208 tagagccagcggat 1195
>ISMsm4
Length = 1458
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 170 gccgaccgcggcgg 183
||||||||||||||
Sbjct: 1135 gccgaccgcggcgg 1148
>ISSfr2
Length = 1534
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 70 gcgccgtctggatc 83
||||||||||||||
Sbjct: 454 gcgccgtctggatc 467
>ISSav2
Length = 1938
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 122 gagcgggcggccgt 135
||||||||||||||
Sbjct: 259 gagcgggcggccgt 246
>ISAzvi8
Length = 1482
Score = 28.2 bits (14), Expect = 4.5
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 170 gccgaccgcggcggcggt 187
||||||||||| ||||||
Sbjct: 1352 gccgaccgcgggggcggt 1335
>ISEc12
Length = 2581
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 159 tccatcagcatgcc 172
||||||||||||||
Sbjct: 2193 tccatcagcatgcc 2180
>IS1663
Length = 1225
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 215 cacgtagctgtcga 228
||||||||||||||
Sbjct: 539 cacgtagctgtcga 526
>ISMlo2
Length = 1402
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 62 gatcacgcgcgccg 75
||||||||||||||
Sbjct: 871 gatcacgcgcgccg 884
>ISPsy4
Length = 1962
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 6 ctgacgccgccgct 19
||||||||||||||
Sbjct: 369 ctgacgccgccgct 356
>ISRsp1
Length = 3481
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 82 tcagcaccagcgac 95
||||||||||||||
Sbjct: 3255 tcagcaccagcgac 3268
>IS1650
Length = 898
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 160 ccatcagcatgccg 173
||||||||||||||
Sbjct: 357 ccatcagcatgccg 370
>IS1549
Length = 1640
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 178 cggcggcggtgagg 191
||||||||||||||
Sbjct: 1562 cggcggcggtgagg 1549
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_406_length_231_cov_0.727273_ID_5980
(231 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISRm12 | IS5 | IS5 | Sinorhizobium meliloti | 32 | 0.29 |
| IS1096 | ISL3 | - | Mycobacterium smegmatis | 32 | 0.29 |
| ISNaoc5 | IS200/IS605 | IS1341 | Natronococcus occultus | 30 | 1.1 |
| ISMgi2 | IS1182 | Mycobacterium gilvum | 30 | 1.1 | |
| ISArsp6 | Tn3 | Arthrobacter sp. | 30 | 1.1 | |
| ISApr8 | IS1380 | alpha proteobacterium | 30 | 1.1 | |
| ISSsp2 | IS3 | IS150 | Sphingomonas sp. | 30 | 1.1 |
| IS408 | IS21 | - | Burkholderia cepacia | 30 | 1.1 |
| ISPa59 | IS30 | Pseudomonas aeruginosa | 28 | 4.5 | |
| ISSin1 | IS256 | IS1249 | Scardovia inopinata | 28 | 4.5 |
| ISAcfe1 | IS1182 | Acidimicrobium ferrooxidans | 28 | 4.5 | |
| ISShes11 | Tn3 | Shewanella sp. | 28 | 4.5 | |
| ISBusp3 | IS5 | Burkholderia sp. | 28 | 4.5 | |
| ISAnsp9 | ISAs1 | Anaeromyxobacter sp. | 28 | 4.5 | |
| ISCARN35 | IS4 | IS4 | Metagenomic data from CARNOULES | 28 | 4.5 |
| ISBusp2 | IS5 | IS5 | Burkholderia sp. | 28 | 4.5 |
| ISSer1 | IS110 | Saccharopolyspora erythraea | 28 | 4.5 | |
| ISNmu3 | IS3 | IS2 | Nitrosospira multiformis | 28 | 4.5 |
| ISBlo1 | IS21 | Bifidobacterium longum | 28 | 4.5 | |
| ISPa42 | Tn3 | Pseudomonas aeruginosa | 28 | 4.5 | |
| IS1600 | IS21 | - | Ralstonia eutropha | 28 | 4.5 |
| IS1110 | IS110 | - | Mycobacterium avium | 28 | 4.5 |
>ISRm12
Length = 1481
Score = 32.2 bits (16), Expect = 0.29
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 172 caccgaacgcctcgtc 187
||||||||||||||||
Sbjct: 249 caccgaacgcctcgtc 234
>IS1096
Length = 2259
Score = 32.2 bits (16), Expect = 0.29
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 85 gacctcatgctcgatg 100
||||||||||||||||
Sbjct: 1949 gacctcatgctcgatg 1934
>ISNaoc5
Length = 1483
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 10 gaacgcatctaccac 24
|||||||||||||||
Sbjct: 387 gaacgcatctaccac 401
>ISMgi2
Length = 1770
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 2 gcggccaggaacgca 16
|||||||||||||||
Sbjct: 163 gcggccaggaacgca 149
>ISArsp6
Length = 26712
Score = 30.2 bits (15), Expect = 1.1
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 138 tggaacaacgcgacggccg 156
|||||||||||| ||||||
Sbjct: 6039 tggaacaacgcggcggccg 6057
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 99 tggcctcccttggc 112
||||||||||||||
Sbjct: 8095 tggcctcccttggc 8082
>ISApr8
Length = 1667
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 117 tcctgcgcaccctgg 131
|||||||||||||||
Sbjct: 1238 tcctgcgcaccctgg 1252
>ISSsp2
Length = 1511
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 74 cactacgacgagacc 88
|||||||||||||||
Sbjct: 71 cactacgacgagacc 57
>IS408
Length = 2798
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 18 ctaccactgacccga 32
|||||||||||||||
Sbjct: 1812 ctaccactgacccga 1826
>ISPa59
Length = 1113
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 145 acgcgacggccgcg 158
||||||||||||||
Sbjct: 488 acgcgacggccgcg 501
>ISSin1
Length = 1339
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 154 ccgcgtctactacc 167
||||||||||||||
Sbjct: 730 ccgcgtctactacc 743
>ISAcfe1
Length = 1772
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 162 actaccagcgcacc 175
||||||||||||||
Sbjct: 1427 actaccagcgcacc 1440
>ISShes11
Length = 7669
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 141 aacaacgcgacggc 154
||||||||||||||
Sbjct: 1863 aacaacgcgacggc 1850
>ISBusp3
Length = 1349
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 85 gacctcatgctcga 98
||||||||||||||
Sbjct: 448 gacctcatgctcga 435
>ISAnsp9
Length = 1704
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 136 cctggaacaacgcg 149
||||||||||||||
Sbjct: 836 cctggaacaacgcg 823
>ISCARN35
Length = 1455
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 182 ctcgtcgaacaccc 195
||||||||||||||
Sbjct: 1046 ctcgtcgaacaccc 1033
>ISBusp2
Length = 1349
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 85 gacctcatgctcga 98
||||||||||||||
Sbjct: 448 gacctcatgctcga 435
>ISSer1
Length = 1447
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 76 ctacgacgagacct 89
||||||||||||||
Sbjct: 165 ctacgacgagacct 152
>ISNmu3
Length = 1323
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 54 gacgggagtaaaac 67
||||||||||||||
Sbjct: 1090 gacgggagtaaaac 1077
>ISBlo1
Length = 2590
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 181 cctcgtcgaacacc 194
||||||||||||||
Sbjct: 1088 cctcgtcgaacacc 1075
>ISPa42
Length = 16941
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 214 cggcatctacctcg 227
||||||||||||||
Sbjct: 3217 cggcatctacctcg 3204
>IS1600
Length = 2520
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 91 atgctcgatggcct 104
||||||||||||||
Sbjct: 2038 atgctcgatggcct 2025
>IS1110
Length = 1462
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 160 ctactaccagcgca 173
||||||||||||||
Sbjct: 1298 ctactaccagcgca 1311
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_407_length_231_cov_0.727273_ID_5982
(231 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| TnAs3 | Tn3 | Aeromonas salmonicida | 32 | 0.29 | |
| ISMgi4 | IS1182 | Mycobacterium gilvum | 32 | 0.29 | |
| ISAcp1 | IS5 | IS5 | Acidobacterium capsulatum | 30 | 1.1 |
| ISPmi1 | IS3 | IS51 | Proteus mirabilis | 30 | 1.1 |
| ISRpa6 | ISAs1 | Rhodopseudomonas palustris | 30 | 1.1 | |
| ISRpa5 | ISAs1 | Rhodopseudomonas palustris | 30 | 1.1 | |
| ISBusp5 | ISKra4 | ISAzba1 | Burkholderia sp. | 28 | 4.5 |
| ISMex38 | Tn3 | Methylobacterium extorquens | 28 | 4.5 | |
| ISEc19 | IS481 | Escherichia coli | 28 | 4.5 | |
| IS4811 | IS5 | IS1031 | Streptomyces lividans | 28 | 4.5 |
>TnAs3
Length = 18735
Score = 32.2 bits (16), Expect = 0.29
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 77 cctcggtgagattcag 92
||||||||||||||||
Sbjct: 8844 cctcggtgagattcag 8859
>ISMgi4
Length = 1772
Score = 32.2 bits (16), Expect = 0.29
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 177 cgcgtcgtcgagaatc 192
||||||||||||||||
Sbjct: 524 cgcgtcgtcgagaatc 509
>ISAcp1
Length = 1483
Score = 30.2 bits (15), Expect = 1.1
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 164 gcgtcatgctcaacgcgtc 182
||||||||||| |||||||
Sbjct: 446 gcgtcatgctcgacgcgtc 428
>ISPmi1
Length = 1306
Score = 30.2 bits (15), Expect = 1.1
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 108 actgtaatgaatcacgccg 126
||||| |||||||||||||
Sbjct: 958 actgtgatgaatcacgccg 940
>ISRpa6
Length = 1193
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 129 cacattggccagcgc 143
|||||||||||||||
Sbjct: 522 cacattggccagcgc 508
>ISRpa5
Length = 1193
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 129 cacattggccagcgc 143
|||||||||||||||
Sbjct: 522 cacattggccagcgc 508
>ISBusp5
Length = 1533
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 170 tgctcaacgcgtcg 183
||||||||||||||
Sbjct: 1011 tgctcaacgcgtcg 998
>ISMex38
Length = 3841
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 18 gttcggcgccatcg 31
||||||||||||||
Sbjct: 333 gttcggcgccatcg 320
>ISEc19
Length = 1229
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 13 aggcggttcggcgc 26
||||||||||||||
Sbjct: 480 aggcggttcggcgc 467
>IS4811
Length = 5396
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 65 tcacggtgggtgcc 78
||||||||||||||
Sbjct: 3657 tcacggtgggtgcc 3644
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_408_length_230_cov_0.954248_ID_5984
(230 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISRel1 | IS4 | IS4Sa | Rhizobium etli | 32 | 0.29 |
| ISBce2 | IS4 | IS231 | Bacillus cereus | 32 | 0.29 |
| ISHlsp1 | IS200/IS605 | IS605 | Halopiger sp. | 30 | 1.1 |
| ISNhu1 | IS200/IS605 | IS605 | Natrialba hulunbeirensis | 30 | 1.1 |
| ISPa38 | Tn3 | Pseudomonas aeruginosa | 30 | 1.1 | |
| ISAar34 | ISL3 | Arthrobacter arilaitensis | 30 | 1.1 | |
| ISSsp5 | IS21 | Sphingomonas sp. | 30 | 1.1 | |
| ISSpr2 | IS3 | IS407 | Serratia proteamaculans | 30 | 1.1 |
| IS292 | IS66 | - | Agrobacterium sp | 30 | 1.1 |
| IS1206 | IS3 | IS51 | Corynebacterium glutamicum | 30 | 1.1 |
| ISFK1 | IS21 | Bradyrhizobium japonicum | 28 | 4.5 | |
| ISAzs30 | IS21 | Azospirillum sp. | 28 | 4.5 | |
| ISPth1 | IS5 | IS903 | Paracoccus thiocyanatus | 28 | 4.5 |
| ISVsp8 | IS1380 | Verrucomicrobium spinosum | 28 | 4.5 | |
| ISRm20 | IS481 | Sinorhizobium meliloti | 28 | 4.5 | |
| ISApr13 | IS5 | Alpha proteobacterium | 28 | 4.5 | |
| ISRpa8 | IS5 | IS5 | Rhodopseudomonas palustris | 28 | 4.5 |
| ISPfr18 | ISL3 | Propionibacterium freudenreichii | 28 | 4.5 | |
| ISAar42 | ISL3 | Arthrobacter arilaitensis | 28 | 4.5 | |
| ISVsp19 | IS1380 | Verrucomicrobium spinosum | 28 | 4.5 | |
| ISMex27 | IS21 | Methylobacterium extorquens | 28 | 4.5 | |
| ISSoc15 | IS630 | Synechococcus sp. | 28 | 4.5 | |
| ISAzo14 | IS1634 | Azoarcus sp. | 28 | 4.5 | |
| ISBad1 | IS21 | Bifidobacterium adolescentis | 28 | 4.5 | |
| ISGur6 | IS3 | IS3 | Geobacter uraniireducens | 28 | 4.5 |
| ISSde1 | IS4 | IS10 | Shewanella denitrificans | 28 | 4.5 |
| ISFsp1 | ISL3 | Frankia sp. | 28 | 4.5 | |
| IS469 | ISL3 | - | Streptomyces coelicolor | 28 | 4.5 |
| IS408 | IS21 | - | Burkholderia cepacia | 28 | 4.5 |
| IS30D | IS30 | - | Escherichia coli | 28 | 4.5 |
| IS30 | IS30 | - | Escherichia coli | 28 | 4.5 |
| IS1395 | IS256 | - | Mycobacterium xenopi | 28 | 4.5 |
| IS1326 | IS21 | - | Pseudomonas aeruginosa | 28 | 4.5 |
>ISRel1
Length = 1273
Score = 32.2 bits (16), Expect = 0.29
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 133 cggcgagcggatcgaa 148
||||||||||||||||
Sbjct: 877 cggcgagcggatcgaa 892
>ISBce2
Length = 1646
Score = 32.2 bits (16), Expect = 0.29
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 151 tcttggcttcgaattcatcg 170
|||||| |||||||||||||
Sbjct: 1159 tcttggtttcgaattcatcg 1178
>ISHlsp1
Length = 1853
Score = 30.2 bits (15), Expect = 1.1
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 204 gcgacgatgcgctcgttga 222
|||||| ||||||||||||
Sbjct: 1130 gcgacgttgcgctcgttga 1112
>ISNhu1
Length = 1902
Score = 30.2 bits (15), Expect = 1.1
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 204 gcgacgatgcgctcgttga 222
|||||| ||||||||||||
Sbjct: 1179 gcgacgttgcgctcgttga 1161
>ISPa38
Length = 6455
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 203 ggcgacgatgcgctc 217
|||||||||||||||
Sbjct: 804 ggcgacgatgcgctc 818
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 190 gatcgaccagacgg 203
||||||||||||||
Sbjct: 5150 gatcgaccagacgg 5163
>ISAar34
Length = 1438
Score = 30.2 bits (15), Expect = 1.1
Identities = 21/23 (91%)
Strand = Plus / Minus
Query: 135 gcgagcggatcgaaggtcttggc 157
|||| ||| ||||||||||||||
Sbjct: 571 gcgaacgggtcgaaggtcttggc 549
>ISSsp5
Length = 2501
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 28 cctgcccttcgacga 42
|||||||||||||||
Sbjct: 2222 cctgcccttcgacga 2236
>ISSpr2
Length = 1221
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 163 attcatcgctgaact 177
|||||||||||||||
Sbjct: 1101 attcatcgctgaact 1115
>IS292
Length = 2496
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 66 cgacgcttgatcgag 80
|||||||||||||||
Sbjct: 303 cgacgcttgatcgag 317
>IS1206
Length = 1290
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 209 gatgcgctcgttgaa 223
|||||||||||||||
Sbjct: 629 gatgcgctcgttgaa 643
>ISFK1
Length = 2592
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 133 cggcgagcggatcg 146
||||||||||||||
Sbjct: 1424 cggcgagcggatcg 1437
>ISAzs30
Length = 2365
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 203 ggcgacgatgcgct 216
||||||||||||||
Sbjct: 1012 ggcgacgatgcgct 999
>ISPth1
Length = 1054
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 133 cggcgagcggatcg 146
||||||||||||||
Sbjct: 883 cggcgagcggatcg 896
>ISVsp8
Length = 1802
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 187 ccagatcgaccaga 200
||||||||||||||
Sbjct: 212 ccagatcgaccaga 225
>ISRm20
Length = 1265
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 13 cgatctcgccctcg 26
||||||||||||||
Sbjct: 1041 cgatctcgccctcg 1028
>ISApr13
Length = 1556
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 138 agcggatcgaaggt 151
||||||||||||||
Sbjct: 1024 agcggatcgaaggt 1037
>ISRpa8
Length = 1540
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 187 ccagatcgaccaga 200
||||||||||||||
Sbjct: 699 ccagatcgaccaga 686
>ISPfr18
Length = 1437
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 203 ggcgacgatgcgct 216
||||||||||||||
Sbjct: 1112 ggcgacgatgcgct 1099
>ISAar42
Length = 1443
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 203 ggcgacgatgcgct 216
||||||||||||||
Sbjct: 1119 ggcgacgatgcgct 1106
>ISVsp19
Length = 1802
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 187 ccagatcgaccaga 200
||||||||||||||
Sbjct: 212 ccagatcgaccaga 225
>ISMex27
Length = 2493
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 205 cgacgatgcgctcg 218
||||||||||||||
Sbjct: 1171 cgacgatgcgctcg 1158
>ISSoc15
Length = 1016
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 191 atcgaccagacggg 204
||||||||||||||
Sbjct: 501 atcgaccagacggg 514
>ISAzo14
Length = 1925
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 208 cgatgcgctcgttg 221
||||||||||||||
Sbjct: 1229 cgatgcgctcgttg 1216
>ISBad1
Length = 2525
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 190 gatcgaccagacgg 203
||||||||||||||
Sbjct: 1541 gatcgaccagacgg 1554
>ISGur6
Length = 1667
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 177 ttgccggtttccag 190
||||||||||||||
Sbjct: 1384 ttgccggtttccag 1397
>ISSde1
Length = 1318
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 168 tcgctgaacttgcc 181
||||||||||||||
Sbjct: 530 tcgctgaacttgcc 543
>ISFsp1
Length = 1732
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 186 tccagatcgaccag 199
||||||||||||||
Sbjct: 614 tccagatcgaccag 601
>IS469
Length = 1647
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 21 ccctcgccctgccc 34
||||||||||||||
Sbjct: 183 ccctcgccctgccc 196
>IS408
Length = 2798
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 203 ggcgacgatgcgct 216
||||||||||||||
Sbjct: 2104 ggcgacgatgcgct 2091
>IS30D
Length = 1221
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 122 gtccttggcagcgg 135
||||||||||||||
Sbjct: 1018 gtccttggcagcgg 1031
>IS30
Length = 1221
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 122 gtccttggcagcgg 135
||||||||||||||
Sbjct: 1018 gtccttggcagcgg 1031
>IS1395
Length = 1323
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 18 tcgccctcgccctg 31
||||||||||||||
Sbjct: 710 tcgccctcgccctg 723
>IS1326
Length = 2470
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 177 ttgccggtttccag 190
||||||||||||||
Sbjct: 2321 ttgccggtttccag 2308
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_409_length_230_cov_0.954248_ID_5986
(230 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISMt1 | IS5 | IS427 | Mycobacterium tuberculosis | 38 | 0.005 |
| ISHko3 | IS200/IS605 | Halorubrum kocurii | 30 | 1.1 | |
| ISMch1 | IS3 | IS150 | Methylobacterium chloromethanicum | 30 | 1.1 |
| ISMpo3 | IS1380 | Methylobacterium populi | 30 | 1.1 | |
| ISCARN44 | IS630 | Metagenomic data from CARNOULES | 30 | 1.1 | |
| ISDge5 | IS701 | Deinococcus geothermalis | 30 | 1.1 | |
| ISGbe2 | IS3 | IS2 | Granulibacter bethesdensis | 30 | 1.1 |
| ISHarch15 | IS200/IS605 | IS605 | Halophilic archaeon | 28 | 4.5 |
| ISSoc9 | IS200/IS605 | IS1341 | Synechococcus sp | 28 | 4.5 |
| ISNamo26 | IS200/IS605 | IS1341 | Natronomonas moolapensis | 28 | 4.5 |
| ISHbo5 | IS200/IS605 | IS605 | Halogeometricum borinquense | 28 | 4.5 |
| ISHmu4 | IS200/IS605 | IS1341 | Halomicrobium mukohataei | 28 | 4.5 |
| ISHmu5 | IS200/IS605 | Halomicrobium mukohataei | 28 | 4.5 | |
| ISHoc2 | ISKra4 | ISKra4 | Haliangium ochraceum | 28 | 4.5 |
| ISPze1 | IS5 | IS427 | Paracoccus zeaxanthinifaciens | 28 | 4.5 |
| ISPaes2 | IS5 | IS427 | Paracoccus aestuarii | 28 | 4.5 |
| ISAde4 | IS3 | IS407 | Anaeromyxobacter dehalogenans | 28 | 4.5 |
| ISAcma27 | IS630 | Acaryochloris marina | 28 | 4.5 | |
| ISAcma24 | IS701 | Acaryochloris marina | 28 | 4.5 | |
| ISAfe4 | IS66 | Acidithiobacillus ferrooxidans | 28 | 4.5 | |
| ISMsm3 | IS1380 | Mycobacterium smegmatis | 28 | 4.5 | |
| ISRhsp4 | IS5 | IS427 | Rhodobacter sphaeroides | 28 | 4.5 |
| ISRso6 | IS21 | - | Ralstonia solanacearum | 28 | 4.5 |
| IS1223 | IS3 | IS150 | Lactobacillus johnsonii | 28 | 4.5 |
>ISMt1
Length = 969
Score = 38.2 bits (19), Expect = 0.005
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 84 ctcggcggcgtcctgctgg 102
|||||||||||||||||||
Sbjct: 899 ctcggcggcgtcctgctgg 917
>ISHko3
Length = 1862
Score = 30.2 bits (15), Expect = 1.1
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 183 cacggcggcggctgcgtgg 201
|||||||||||| ||||||
Sbjct: 1475 cacggcggcggcggcgtgg 1493
>ISMch1
Length = 1294
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 133 cggcgctggtgaact 147
|||||||||||||||
Sbjct: 930 cggcgctggtgaact 916
>ISMpo3
Length = 1617
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 87 ggcggcgtcctgctg 101
|||||||||||||||
Sbjct: 216 ggcggcgtcctgctg 230
>ISCARN44
Length = 1115
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 132 acggcgctggtgaac 146
|||||||||||||||
Sbjct: 587 acggcgctggtgaac 601
>ISDge5
Length = 1150
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 104 tagcgaagaagcgct 118
|||||||||||||||
Sbjct: 23 tagcgaagaagcgct 37
>ISGbe2
Length = 1352
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 111 gaagcgctggagcgc 125
|||||||||||||||
Sbjct: 419 gaagcgctggagcgc 433
>ISHarch15
Length = 1988
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 33 gagacgcagtctct 46
||||||||||||||
Sbjct: 1334 gagacgcagtctct 1347
>ISSoc9
Length = 1514
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 117 ctggagcgcctgtt 130
||||||||||||||
Sbjct: 386 ctggagcgcctgtt 373
>ISNamo26
Length = 1689
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 79 tcaaactcggcggc 92
||||||||||||||
Sbjct: 653 tcaaactcggcggc 640
>ISHbo5
Length = 2038
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 33 gagacgcagtctct 46
||||||||||||||
Sbjct: 1384 gagacgcagtctct 1397
>ISHmu4
Length = 1616
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 79 tcaaactcggcggc 92
||||||||||||||
Sbjct: 550 tcaaactcggcggc 537
>ISHmu5
Length = 1847
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 79 tcaaactcggcggc 92
||||||||||||||
Sbjct: 831 tcaaactcggcggc 818
>ISHoc2
Length = 1715
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 106 gcgaagaagcgctg 119
||||||||||||||
Sbjct: 219 gcgaagaagcgctg 232
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 181 tgcacggcggcggc 194
||||||||||||||
Sbjct: 1341 tgcacggcggcggc 1328
>ISPze1
Length = 851
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 111 gaagcgctggagcg 124
||||||||||||||
Sbjct: 265 gaagcgctggagcg 278
>ISPaes2
Length = 841
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 111 gaagcgctggagcg 124
||||||||||||||
Sbjct: 255 gaagcgctggagcg 268
>ISAde4
Length = 1183
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 114 gcgctggagcgcct 127
||||||||||||||
Sbjct: 816 gcgctggagcgcct 829
>ISAcma27
Length = 1185
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 209 gctcatgaagcagc 222
||||||||||||||
Sbjct: 1150 gctcatgaagcagc 1137
>ISAcma24
Length = 1428
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 56 tgtgatgatgaatc 69
||||||||||||||
Sbjct: 1332 tgtgatgatgaatc 1345
>ISAfe4
Length = 2477
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 108 gaagaagcgctgga 121
||||||||||||||
Sbjct: 1046 gaagaagcgctgga 1059
>ISMsm3
Length = 1695
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 85 tcggcggcgtcctg 98
||||||||||||||
Sbjct: 932 tcggcggcgtcctg 919
>ISRhsp4
Length = 840
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 111 gaagcgctggagcg 124
||||||||||||||
Sbjct: 254 gaagcgctggagcg 267
>ISRso6
Length = 2064
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 217 agcagctcaacctg 230
||||||||||||||
Sbjct: 1182 agcagctcaacctg 1195
>IS1223
Length = 1494
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 44 tcttatttaaggtg 57
||||||||||||||
Sbjct: 632 tcttatttaaggtg 645
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_410_length_230_cov_0.947712_ID_5988
(230 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISStu2 | ISAzo13 | Streptomyces turgidiscabies | 32 | 0.29 | |
| ISNha8 | IS5 | Nitrobacter hamburgensis | 32 | 0.29 | |
| ISNml2 | IS1380 | Nakamurella multipartita | 32 | 0.29 | |
| ISBrsp2 | IS1182 | Bradyrhizobium sp. | 32 | 0.29 | |
| ISSoc8 | IS200/IS605 | IS1341 | Synechococcus sp. | 30 | 1.1 |
| TnAs2 | Tn3 | Aeromonas salmonicida | 30 | 1.1 | |
| ISMyma9 | IS21 | Mycobacterium marinum | 30 | 1.1 | |
| ISMal1 | ISKra4 | ISAzba1 | Mesorhizobium alhagi | 30 | 1.1 |
| ISAod1 | IS256 | IS1249 | Actinomyces odontolyticus | 30 | 1.1 |
| ISAzs29 | Tn3 | Azospirillum sp. | 30 | 1.1 | |
| ISAzs20 | IS66 | Azospirillum sp. | 30 | 1.1 | |
| ISGeob5 | IS5 | IS427 | Geodermatophilus obscurus | 30 | 1.1 |
| ISPpa7 | IS66 | Paracoccus pantotrophus | 30 | 1.1 | |
| ISMtsp19 | IS701 | Methylobacterium sp. | 30 | 1.1 | |
| ISAli18 | ISL3 | Azospirillum lipoferum | 30 | 1.1 | |
| ISCsp1 | IS256 | Comamonas sp | 30 | 1.1 | |
| IS1549 | IS1634 | - | Mycobacterium smegmatis | 30 | 1.1 |
| ISRtr5 | IS66 | Rhizobium tropici | 28 | 4.5 | |
| ISMex44 | IS200/IS605 | IS1341 | Methylobacterium extorquens | 28 | 4.5 |
| ISNph25 | IS200/IS605 | IS1341 | Natronomonas pharaonis | 28 | 4.5 |
| ISBj3 | IS3 | IS150 | Bradyrhizobium japonicum | 28 | 4.5 |
| ISUnCu7 | ISKra4 | ISAzba1 | Uncultured bacterium | 28 | 4.5 |
| ISFsp17 | ISKra4 | ISKra4 | Frankia sp. | 28 | 4.5 |
| ISPa36 | IS21 | Pseudomonas aeruginosa | 28 | 4.5 | |
| ISRta5 | IS5 | IS903 | Cupriavidus taiwanensis | 28 | 4.5 |
| ISRel15 | IS66 | Rhizobium etli | 28 | 4.5 | |
| ISBusp3 | IS5 | Burkholderia sp. | 28 | 4.5 | |
| ISMpo6 | IS1182 | Methylobacterium populi | 28 | 4.5 | |
| ISPfr21 | IS481 | Propionibacterium freudenreichii | 28 | 4.5 | |
| ISPfr10 | IS3 | IS407 | Propionibacterium freudenreichii | 28 | 4.5 |
| ISPfr3 | ISL3 | Propionibacterium freudenreichii | 28 | 4.5 | |
| ISArsp6 | Tn3 | Arthrobacter sp. | 28 | 4.5 | |
| ISAar43 | IS3 | IS407 | Arthrobacter arilaitensis | 28 | 4.5 |
| ISMav7 | IS1380 | Mycobacterium avium | 28 | 4.5 | |
| ISCARN76 | IS5 | IS5 | Metagenomic data from CARNOULES | 28 | 4.5 |
| ISAzo29 | ISAs1 | Azoarcus sp. | 28 | 4.5 | |
| ISAzo28 | IS110 | Azoarcus sp. | 28 | 4.5 | |
| ISMysp6 | IS481 | Mycobacterium sp. | 28 | 4.5 | |
| ISThsp3 | IS66 | Thiomonas sp. | 28 | 4.5 | |
| ISGdi10 | IS481 | Gluconacetobacter diazotrophicus | 28 | 4.5 | |
| ISSsp4 | IS21 | Sphingomonas sp. | 28 | 4.5 | |
| ISApr2 | IS1595 | ISSod11 | Alpha proteobacterium | 28 | 4.5 |
| ISXau1 | IS3 | IS407 | Xanthobacter autotrophicus | 28 | 4.5 |
| ISRhosp2 | IS701 | Rhodococcus sp. | 28 | 4.5 | |
| ISRhosp4 | IS701 | Rhodococcus sp. | 28 | 4.5 | |
| ISAzvi7 | IS4 | IS50 | Azotobacter vinelandii | 28 | 4.5 |
| ISPna2 | IS1595 | ISPna2 | Polaromonas naphthalenivorans | 28 | 4.5 |
| IS885 | IS630 | Ralstonia eutropha | 28 | 4.5 | |
| IS866 | IS66 | - | Agrobacterium tumefaciens | 28 | 4.5 |
| IS1490 | IS256 | - | Burkholderia cepacia | 28 | 4.5 |
| IS1096 | ISL3 | - | Mycobacterium smegmatis | 28 | 4.5 |
>ISStu2
Length = 1760
Score = 32.2 bits (16), Expect = 0.29
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 65 tgccgcctcggcgccg 80
||||||||||||||||
Sbjct: 450 tgccgcctcggcgccg 465
>ISNha8
Length = 1288
Score = 32.2 bits (16), Expect = 0.29
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 26 ccggccggcggcgccg 41
||||||||||||||||
Sbjct: 581 ccggccggcggcgccg 596
>ISNml2
Length = 1689
Score = 32.2 bits (16), Expect = 0.29
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 180 gcggtgagccggttgc 195
||||||||||||||||
Sbjct: 1133 gcggtgagccggttgc 1118
>ISBrsp2
Length = 1547
Score = 32.2 bits (16), Expect = 0.29
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 187 gccggttgctggcttc 202
||||||||||||||||
Sbjct: 714 gccggttgctggcttc 699
>ISSoc8
Length = 1285
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 46 tgaccggttcagccg 60
|||||||||||||||
Sbjct: 703 tgaccggttcagccg 717
>TnAs2
Length = 8650
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 108 tcggcgggcaccttg 122
|||||||||||||||
Sbjct: 6942 tcggcgggcaccttg 6928
>ISMyma9
Length = 2162
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 147 accgcgctggcgatc 161
|||||||||||||||
Sbjct: 1671 accgcgctggcgatc 1685
>ISMal1
Length = 2308
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 208 tcagctgcaggcctt 222
|||||||||||||||
Sbjct: 1665 tcagctgcaggcctt 1651
>ISAod1
Length = 1334
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 146 caccgcgctggcgat 160
|||||||||||||||
Sbjct: 643 caccgcgctggcgat 629
>ISAzs29
Length = 3897
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 27 cggccggcggcgccg 41
|||||||||||||||
Sbjct: 1001 cggccggcggcgccg 987
>ISAzs20
Length = 2811
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 57 gccgccggtgccgcc 71
|||||||||||||||
Sbjct: 1804 gccgccggtgccgcc 1790
>ISGeob5
Length = 903
Score = 30.2 bits (15), Expect = 1.1
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 139 cgaccagcaccgcgctggc 157
|||||| ||||||||||||
Sbjct: 824 cgaccatcaccgcgctggc 842
>ISPpa7
Length = 2731
Score = 30.2 bits (15), Expect = 1.1
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 16 aggcctcgaaccggccggc 34
|||||||||||||| ||||
Sbjct: 1039 aggcctcgaaccgggcggc 1021
>ISMtsp19
Length = 1486
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 126 aggtcggccagttcg 140
|||||||||||||||
Sbjct: 914 aggtcggccagttcg 900
>ISAli18
Length = 1752
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 39 ccgatgatgaccggt 53
|||||||||||||||
Sbjct: 843 ccgatgatgaccggt 829
>ISCsp1
Length = 1393
Score = 30.2 bits (15), Expect = 1.1
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 60 gccggtgccgcctcggcgc 78
|||| ||||||||||||||
Sbjct: 958 gccgctgccgcctcggcgc 940
>IS1549
Length = 1640
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 22 cgaaccggccggcgg 36
|||||||||||||||
Sbjct: 319 cgaaccggccggcgg 305
>ISRtr5
Length = 2577
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 38 gccgatgatgaccg 51
||||||||||||||
Sbjct: 399 gccgatgatgaccg 386
>ISMex44
Length = 1270
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 177 gcggcggtgagccg 190
||||||||||||||
Sbjct: 897 gcggcggtgagccg 884
>ISNph25
Length = 1437
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 137 ttcgaccagcaccg 150
||||||||||||||
Sbjct: 620 ttcgaccagcaccg 633
>ISBj3
Length = 1284
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 51 ggttcagccgccgg 64
||||||||||||||
Sbjct: 811 ggttcagccgccgg 824
>ISUnCu7
Length = 2273
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 54 tcagccgccggtgc 67
||||||||||||||
Sbjct: 750 tcagccgccggtgc 737
>ISFsp17
Length = 1693
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 72 tcggcgccgtcgag 85
||||||||||||||
Sbjct: 1539 tcggcgccgtcgag 1526
>ISPa36
Length = 2468
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 27 cggccggcggcgcc 40
||||||||||||||
Sbjct: 436 cggccggcggcgcc 449
>ISRta5
Length = 1130
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 122 gagcaggtcggcca 135
||||||||||||||
Sbjct: 680 gagcaggtcggcca 667
>ISRel15
Length = 2497
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 148 ccgcgctggcgatc 161
||||||||||||||
Sbjct: 1803 ccgcgctggcgatc 1816
>ISBusp3
Length = 1349
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 25 accggccggcggcg 38
||||||||||||||
Sbjct: 592 accggccggcggcg 605
>ISMpo6
Length = 1593
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 157 cgatctgctcgatg 170
||||||||||||||
Sbjct: 580 cgatctgctcgatg 567
>ISPfr21
Length = 2632
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 151 cgctggcgatctgc 164
||||||||||||||
Sbjct: 198 cgctggcgatctgc 211
>ISPfr10
Length = 1247
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 179 ggcggtgagccggt 192
||||||||||||||
Sbjct: 865 ggcggtgagccggt 852
>ISPfr3
Length = 1457
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 120 ttgagcaggtcggc 133
||||||||||||||
Sbjct: 1048 ttgagcaggtcggc 1035
>ISArsp6
Length = 26712
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 180 gcggtgagccggtt 193
||||||||||||||
Sbjct: 4264 gcggtgagccggtt 4277
>ISAar43
Length = 1247
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 179 ggcggtgagccggt 192
||||||||||||||
Sbjct: 865 ggcggtgagccggt 852
>ISMav7
Length = 1691
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 127 ggtcggccagttcg 140
||||||||||||||
Sbjct: 221 ggtcggccagttcg 208
>ISCARN76
Length = 1208
Score = 28.2 bits (14), Expect = 4.5
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 57 gccgccggtgccgcctcg 74
||||| ||||||||||||
Sbjct: 782 gccgcgggtgccgcctcg 765
>ISAzo29
Length = 1304
Score = 28.2 bits (14), Expect = 4.5
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 115 gcaccttgagcaggtcgg 132
||||||||||||| ||||
Sbjct: 617 gcaccttgagcagttcgg 600
>ISAzo28
Length = 1486
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 123 agcaggtcggccag 136
||||||||||||||
Sbjct: 568 agcaggtcggccag 555
>ISMysp6
Length = 1077
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 17 ggcctcgaaccggc 30
||||||||||||||
Sbjct: 249 ggcctcgaaccggc 236
>ISThsp3
Length = 2455
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 65 tgccgcctcggcgc 78
||||||||||||||
Sbjct: 253 tgccgcctcggcgc 266
>ISGdi10
Length = 1229
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 120 ttgagcaggtcggc 133
||||||||||||||
Sbjct: 755 ttgagcaggtcggc 742
>ISSsp4
Length = 2558
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 123 agcaggtcggccag 136
||||||||||||||
Sbjct: 1748 agcaggtcggccag 1735
>ISApr2
Length = 1029
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 25 accggccggcggcg 38
||||||||||||||
Sbjct: 549 accggccggcggcg 562
>ISXau1
Length = 1272
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 35 ggcgccgatgatga 48
||||||||||||||
Sbjct: 645 ggcgccgatgatga 658
>ISRhosp2
Length = 1361
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 132 gccagttcgaccag 145
||||||||||||||
Sbjct: 1291 gccagttcgaccag 1278
>ISRhosp4
Length = 1349
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 132 gccagttcgaccag 145
||||||||||||||
Sbjct: 1273 gccagttcgaccag 1260
>ISAzvi7
Length = 1450
Score = 28.2 bits (14), Expect = 4.5
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 57 gccgccggtgccgcctcg 74
|||||||||||| |||||
Sbjct: 1263 gccgccggtgccacctcg 1280
>ISPna2
Length = 1049
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 145 gcaccgcgctggcg 158
||||||||||||||
Sbjct: 332 gcaccgcgctggcg 345
>IS885
Length = 1100
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 178 cggcggtgagccgg 191
||||||||||||||
Sbjct: 409 cggcggtgagccgg 422
>IS866
Length = 2716
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 80 gtcgagaccttcga 93
||||||||||||||
Sbjct: 853 gtcgagaccttcga 840
>IS1490
Length = 1433
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 37 cgccgatgatgacc 50
||||||||||||||
Sbjct: 709 cgccgatgatgacc 696
>IS1096
Length = 2259
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 121 tgagcaggtcggcc 134
||||||||||||||
Sbjct: 1027 tgagcaggtcggcc 1014
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_411_length_230_cov_0.954248_ID_5990
(230 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISSsv1 | IS5 | IS427 | Streptomyces sviceus | 32 | 0.29 |
| ISHti6 | IS630 | Halorhabdus tiamatea | 30 | 1.1 | |
| ISMno30 | ISL3 | Methylobacterium nodulans | 30 | 1.1 | |
| ISAar24 | IS3 | IS3 | Arthrobacter arilaitensis | 30 | 1.1 |
| ISMdi27 | IS21 | Methylobacterium dichloromethanicum | 30 | 1.1 | |
| ISFsp11 | IS66 | ISBst12 | Frankia sp. | 30 | 1.1 |
| IS1655 | IS30 | - | Neisseria meningitidis | 30 | 1.1 |
| ISAeme3 | IS4 | ISH8 | Aeromonas media | 28 | 4.5 |
| ISHxa2 | IS5 | ISH1 | Halopiger xanaduensis | 28 | 4.5 |
| ISRusp2 | IS5 | IS903 | Ruegeria sp. | 28 | 4.5 |
| ISBvi5 | IS5 | IS427 | Burkholderia vietnamiensis | 28 | 4.5 |
| ISPst12 | IS5 | Pseudomonas stutzeri | 28 | 4.5 | |
| ISPa34 | IS110 | IS1111 | Pseudomonas aeruginosa | 28 | 4.5 |
| ISAar23 | ISL3 | Arthrobacter arilaitensis | 28 | 4.5 | |
| ISMdi18 | IS1595 | ISNwi1 | Methylobacterium dichloromethanicum | 28 | 4.5 |
| ISRosp5 | IS3 | IS407 | Roseobacter sp. | 28 | 4.5 |
| ISAcma13 | IS3 | IS150 | Acaryochloris marina | 28 | 4.5 |
| ISCARN28 | IS110 | IS1111 | Metagenomic data from CARNOULES | 28 | 4.5 |
| ISSpu13 | ISAs1 | Shewanella putrefaciens | 28 | 4.5 | |
| ISAau4 | Tn3 | Arthrobacter aurescens | 28 | 4.5 | |
| ISShsp3 | IS3 | IS3 | Sphingomonas sp. | 28 | 4.5 |
| ISVei1 | IS3 | IS3 | Verminephrobacter eiseniae | 28 | 4.5 |
| ISApu1 | IS4 | ISH8 | Aeromonas punctata | 28 | 4.5 |
| ISBcen19 | IS66 | Burkholderia cenocepacia | 28 | 4.5 | |
| IS1663 | IS110 | Bordetella pertussis | 28 | 4.5 | |
| ISPpu14 | IS66 | Pseudomonas putida | 28 | 4.5 | |
| ISCge1 | IS256 | IS1249 | Corynebacterium genitalium | 28 | 4.5 |
| ISRm4-1 | IS5 | IS1031 | Rhizobium meliloti | 28 | 4.5 |
| IS204 | ISL3 | - | Nocardia asteroides | 28 | 4.5 |
>ISSsv1
Length = 967
Score = 32.2 bits (16), Expect = 0.29
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 80 caggcgtgggtgcgct 95
||||||||||||||||
Sbjct: 783 caggcgtgggtgcgct 768
>ISHti6
Length = 1154
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 50 tcgacgatgatgtgc 64
|||||||||||||||
Sbjct: 600 tcgacgatgatgtgc 614
>ISMno30
Length = 1773
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 102 cgacgcgctgctgcg 116
|||||||||||||||
Sbjct: 398 cgacgcgctgctgcg 384
>ISAar24
Length = 1270
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 44 ttctggtcgacgatg 58
|||||||||||||||
Sbjct: 1040 ttctggtcgacgatg 1054
>ISMdi27
Length = 2476
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 84 cgtgggtgcgcttga 98
|||||||||||||||
Sbjct: 1705 cgtgggtgcgcttga 1691
>ISFsp11
Length = 1836
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 68 tcgacggcggcacag 82
|||||||||||||||
Sbjct: 409 tcgacggcggcacag 395
>IS1655
Length = 1080
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 43 tttctggtcgacgat 57
|||||||||||||||
Sbjct: 583 tttctggtcgacgat 569
>ISAeme3
Length = 1384
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 113 tgcgtatcgaccat 126
||||||||||||||
Sbjct: 407 tgcgtatcgaccat 420
>ISHxa2
Length = 947
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 170 cgttgctggtcgat 183
||||||||||||||
Sbjct: 477 cgttgctggtcgat 490
>ISRusp2
Length = 1049
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 70 gacggcggcacagg 83
||||||||||||||
Sbjct: 361 gacggcggcacagg 348
>ISBvi5
Length = 915
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 67 atcgacggcggcac 80
||||||||||||||
Sbjct: 406 atcgacggcggcac 393
>ISPst12
Length = 1331
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 175 ctggtcgataccgt 188
||||||||||||||
Sbjct: 178 ctggtcgataccgt 191
>ISPa34
Length = 1216
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 87 gggtgcgcttgagt 100
||||||||||||||
Sbjct: 526 gggtgcgcttgagt 513
>ISAar23
Length = 1449
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 149 ttgatcacattggc 162
||||||||||||||
Sbjct: 1283 ttgatcacattggc 1296
>ISMdi18
Length = 3479
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 65 tgatcgacggcggc 78
||||||||||||||
Sbjct: 3343 tgatcgacggcggc 3330
>ISRosp5
Length = 1217
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 115 cgtatcgaccatat 128
||||||||||||||
Sbjct: 518 cgtatcgaccatat 505
>ISAcma13
Length = 1263
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 171 gttgctggtcgata 184
||||||||||||||
Sbjct: 841 gttgctggtcgata 828
>ISCARN28
Length = 1419
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 80 caggcgtgggtgcg 93
||||||||||||||
Sbjct: 1092 caggcgtgggtgcg 1079
>ISSpu13
Length = 1240
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 149 ttgatcacattggc 162
||||||||||||||
Sbjct: 92 ttgatcacattggc 79
>ISAau4
Length = 3898
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 57 tgatgtgctgatcg 70
||||||||||||||
Sbjct: 3063 tgatgtgctgatcg 3050
>ISShsp3
Length = 1229
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 7 ggcggcatcggtgg 20
||||||||||||||
Sbjct: 360 ggcggcatcggtgg 373
>ISVei1
Length = 1214
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 101 acgacgcgctgctg 114
||||||||||||||
Sbjct: 421 acgacgcgctgctg 434
>ISApu1
Length = 1384
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 113 tgcgtatcgaccat 126
||||||||||||||
Sbjct: 407 tgcgtatcgaccat 420
>ISBcen19
Length = 2450
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 102 cgacgcgctgctgc 115
||||||||||||||
Sbjct: 2367 cgacgcgctgctgc 2380
>IS1663
Length = 1225
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 58 gatgtgctgatcga 71
||||||||||||||
Sbjct: 785 gatgtgctgatcga 772
>ISPpu14
Length = 2383
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 73 ggcggcacaggcgt 86
||||||||||||||
Sbjct: 870 ggcggcacaggcgt 883
>ISCge1
Length = 1386
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 65 tgatcgacggcggc 78
||||||||||||||
Sbjct: 617 tgatcgacggcggc 630
>ISRm4-1
Length = 937
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 30 gcggacctccgcct 43
||||||||||||||
Sbjct: 779 gcggacctccgcct 792
>IS204
Length = 1452
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 176 tggtcgataccgtc 189
||||||||||||||
Sbjct: 906 tggtcgataccgtc 919
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_412_length_230_cov_0.954248_ID_5992
(230 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISMno25 | IS110 | IS1111 | Methylobacterium nodulans | 32 | 0.29 |
| ISAs29 | IS21 | Aeromonas salmonicida | 30 | 1.1 | |
| ISAs28 | IS21 | Aeromonas salmonicida | 30 | 1.1 | |
| ISAs27 | IS21 | Aeromonas salmonicida | 30 | 1.1 | |
| ISHwa12 | ISH3 | Haloquadratum walsbyi | 30 | 1.1 | |
| ISHha2 | IS5 | Halorhodospira halophila | 30 | 1.1 | |
| ISRop1 | IS1380 | Rhodococcus opacus | 30 | 1.1 | |
| ISAar22 | IS481 | Arthrobacter arilaitensis | 30 | 1.1 | |
| ISCARN75 | IS701 | Metagenomic data from CARNOULES | 30 | 1.1 | |
| ISAeme14 | IS4 | IS4 | Aeromonas media | 28 | 4.5 |
| TnAs1 | Tn3 | Aeromonas salmonicida | 28 | 4.5 | |
| ISBsa1 | IS256 | Blastococcus saxobsidens | 28 | 4.5 | |
| ISMlu11 | IS256 | Micrococcus luteus | 28 | 4.5 | |
| ISPa38 | Tn3 | Pseudomonas aeruginosa | 28 | 4.5 | |
| ISCps6 | IS1182 | Colwellia psychrerythraea | 28 | 4.5 | |
| ISGeob3 | IS5 | ISL2 | Geodermatophilus obscurus | 28 | 4.5 |
| ISSpu5 | IS21 | Shewanella putrefaciens | 28 | 4.5 | |
| ISDha5 | IS4 | ISPepr1 | Desulfitobacterium hafniense | 28 | 4.5 |
| ISHch2 | IS4 | IS4 | Hahella chejuensis | 28 | 4.5 |
| ISMma17 | IS630 | Methanosarcina mazei | 28 | 4.5 | |
| ISRm15 | IS5 | IS1031 | Sinorhizobium meliloti | 28 | 4.5 |
| ISAe1 | ISL3 | - | Ralstonia eutropha | 28 | 4.5 |
| IS401 | IS3 | IS51 | Burkholderia cepacia | 28 | 4.5 |
| IS3501 | IS3 | IS51 | Corynebacterium jeikeium | 28 | 4.5 |
| IS1676 | IS1380 | - | Rhodococcus erythropolis | 28 | 4.5 |
| IS1295 | IS256 | - | Rhodococcus sp. | 28 | 4.5 |
| IS1162 | IS21 | - | Pseudomonas fluorescens | 28 | 4.5 |
>ISMno25
Length = 1518
Score = 32.2 bits (16), Expect = 0.29
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 128 cgacaccgtcctcgaccagg 147
|||| |||||||||||||||
Sbjct: 781 cgacgccgtcctcgaccagg 800
>ISAs29
Length = 2613
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 30 atctcggcccgccat 44
|||||||||||||||
Sbjct: 447 atctcggcccgccat 461
>ISAs28
Length = 2626
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 106 tggagcagctcgact 120
|||||||||||||||
Sbjct: 2002 tggagcagctcgact 2016
>ISAs27
Length = 2628
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 106 tggagcagctcgact 120
|||||||||||||||
Sbjct: 2004 tggagcagctcgact 2018
>ISHwa12
Length = 1509
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 58 tcaacgacattctcg 72
|||||||||||||||
Sbjct: 386 tcaacgacattctcg 400
>ISHha2
Length = 1339
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 106 tggagcagctcgact 120
|||||||||||||||
Sbjct: 313 tggagcagctcgact 327
>ISRop1
Length = 4160
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 116 cgacttctccatcga 130
|||||||||||||||
Sbjct: 1045 cgacttctccatcga 1031
>ISAar22
Length = 1722
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 10 agcgactggccaagg 24
|||||||||||||||
Sbjct: 376 agcgactggccaagg 390
>ISCARN75
Length = 1369
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 39 cgccatctgctcacc 53
|||||||||||||||
Sbjct: 1212 cgccatctgctcacc 1226
>ISAeme14
Length = 1425
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 40 gccatctgctcacc 53
||||||||||||||
Sbjct: 599 gccatctgctcacc 612
>TnAs1
Length = 6694
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 85 tcgaggccggcaag 98
||||||||||||||
Sbjct: 6507 tcgaggccggcaag 6520
>ISBsa1
Length = 1464
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 85 tcgaggccggcaag 98
||||||||||||||
Sbjct: 1287 tcgaggccggcaag 1300
>ISMlu11
Length = 1434
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 138 ctcgaccaggtcct 151
||||||||||||||
Sbjct: 108 ctcgaccaggtcct 95
>ISPa38
Length = 6455
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 122 ctccatcgacaccg 135
||||||||||||||
Sbjct: 316 ctccatcgacaccg 303
>ISCps6
Length = 1738
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 17 ggccaaggtcgaaa 30
||||||||||||||
Sbjct: 157 ggccaaggtcgaaa 170
>ISGeob3
Length = 970
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 85 tcgaggccggcaag 98
||||||||||||||
Sbjct: 429 tcgaggccggcaag 442
>ISSpu5
Length = 2556
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 15 ctggccaaggtcga 28
||||||||||||||
Sbjct: 2187 ctggccaaggtcga 2200
>ISDha5
Length = 1509
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 20 caaggtcgaaatct 33
||||||||||||||
Sbjct: 315 caaggtcgaaatct 328
>ISHch2
Length = 1633
Score = 28.2 bits (14), Expect = 4.5
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 109 agcagctcgacttctcca 126
|||| |||||||||||||
Sbjct: 940 agcacctcgacttctcca 923
>ISMma17
Length = 1075
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 136 tcctcgaccaggtc 149
||||||||||||||
Sbjct: 285 tcctcgaccaggtc 272
>ISRm15
Length = 934
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 11 gcgactggccaagg 24
||||||||||||||
Sbjct: 806 gcgactggccaagg 819
>ISAe1
Length = 1313
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 112 agctcgacttctcc 125
||||||||||||||
Sbjct: 1253 agctcgacttctcc 1266
>IS401
Length = 1316
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 7 ccgagcgactggcc 20
||||||||||||||
Sbjct: 996 ccgagcgactggcc 1009
>IS3501
Length = 1301
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 112 agctcgacttctcc 125
||||||||||||||
Sbjct: 1148 agctcgacttctcc 1135
>IS1676
Length = 1693
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 121 tctccatcgacacc 134
||||||||||||||
Sbjct: 154 tctccatcgacacc 167
>IS1295
Length = 1456
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 85 tcgaggccggcaag 98
||||||||||||||
Sbjct: 1279 tcgaggccggcaag 1292
>IS1162
Length = 2634
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 15 ctggccaaggtcga 28
||||||||||||||
Sbjct: 2267 ctggccaaggtcga 2280
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_413_length_230_cov_0.947712_ID_5994
(230 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISHel2 | IS200/IS605 | IS605 | Haloferax elongans | 30 | 1.1 |
| ISH36 | IS200/IS605 | Halobacterium salinarum | 30 | 1.1 | |
| ISNha7 | IS5 | Nitrobacter hamburgensis | 30 | 1.1 | |
| ISMno5 | ISL3 | Methylobacterium nodulans | 30 | 1.1 | |
| ISAli1 | IS5 | IS1031 | Azospirillum lipoferum | 30 | 1.1 |
| ISKpn4 | IS110 | IS1111 | Klebsiella pneumoniae | 30 | 1.1 |
| ISHma7 | IS200/IS605 | Haloarcula marismortui | 30 | 1.1 | |
| ISNph24 | IS200/IS605 | IS1341 | Natronomonas pharaonis | 28 | 4.5 |
| ISHmu3 | IS200/IS605 | Halomicrobium mukohataei | 28 | 4.5 | |
| ISTni2 | IS481 | Thioalkalivibrio nitratireducens | 28 | 4.5 | |
| ISAzs24 | IS3 | IS51 | Azospirillum sp. | 28 | 4.5 |
| ISUnCu2 | IS5 | IS5 | Uncultured bacterium | 28 | 4.5 |
| ISMtsp17 | IS110 | IS1111 | Methylobacterium sp. | 28 | 4.5 |
| ISMsm12 | IS1380 | Mycobacterium smegmatis | 28 | 4.5 | |
| ISMesp2 | IS1380 | Mesorhizobium sp. | 28 | 4.5 | |
| ISMdi18 | IS1595 | ISNwi1 | Methylobacterium dichloromethanicum | 28 | 4.5 |
| ISTha2 | ISAs1 | Thauera sp. | 28 | 4.5 | |
| ISAcma14 | IS630 | Acaryochloris marina | 28 | 4.5 | |
| ISAfe9 | IS21 | Acidithiobacillus ferrooxidans | 28 | 4.5 | |
| ISGdi7 | IS110 | IS1111 | Gluconacetobacter diazotrophicus | 28 | 4.5 |
| ISAli11 | ISL3 | Azospirillum lipoferum | 28 | 4.5 | |
| ISAli4 | IS3 | IS51 | Azospirillum lipoferum | 28 | 4.5 |
| ISJsp2 | IS5 | IS903 | Janthinobacterium sp. | 28 | 4.5 |
| ISOgr3 | IS5 | IS903 | Oceanicola granulosus | 28 | 4.5 |
| ISRusp1 | IS5 | IS903 | Ruegeria sp. | 28 | 4.5 |
| ISRhosp5 | IS3 | IS51 | Rhodococcus sp. | 28 | 4.5 |
| IS885 | IS630 | Ralstonia eutropha | 28 | 4.5 | |
| ISH10 | IS66 | ISBst12 | Halobacterium sp | 28 | 4.5 |
| IS220 | IS1380 | - | Mycobacterium fortuitum | 28 | 4.5 |
>ISHel2
Length = 1975
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 150 ctggagggcgcggaa 164
|||||||||||||||
Sbjct: 1581 ctggagggcgcggaa 1567
>ISH36
Length = 1978
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 150 ctggagggcgcggaa 164
|||||||||||||||
Sbjct: 1587 ctggagggcgcggaa 1573
>ISNha7
Length = 1302
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 99 acgctgggcgccgac 113
|||||||||||||||
Sbjct: 851 acgctgggcgccgac 865
>ISMno5
Length = 1728
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 57 gcgcccgcggtggcc 71
|||||||||||||||
Sbjct: 720 gcgcccgcggtggcc 706
>ISAli1
Length = 933
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 69 gccagcgtcaaactg 83
|||||||||||||||
Sbjct: 862 gccagcgtcaaactg 876
>ISKpn4
Length = 1377
Score = 30.2 bits (15), Expect = 1.1
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 41 gcgcgaactgggcatggcg 59
||||||||||||| |||||
Sbjct: 498 gcgcgaactgggcgtggcg 516
>ISHma7
Length = 2008
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 150 ctggagggcgcggaa 164
|||||||||||||||
Sbjct: 1617 ctggagggcgcggaa 1603
>ISNph24
Length = 1451
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 66 gtggccagcgtcaa 79
||||||||||||||
Sbjct: 1362 gtggccagcgtcaa 1349
>ISHmu3
Length = 2029
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 151 tggagggcgcggaa 164
||||||||||||||
Sbjct: 1637 tggagggcgcggaa 1624
>ISTni2
Length = 3451
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 212 tgccgccctcgggc 225
||||||||||||||
Sbjct: 2134 tgccgccctcgggc 2147
>ISAzs24
Length = 1325
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 206 cgcccatgccgccc 219
||||||||||||||
Sbjct: 467 cgcccatgccgccc 480
>ISUnCu2
Length = 1491
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 79 aactggccaagctg 92
||||||||||||||
Sbjct: 813 aactggccaagctg 826
>ISMtsp17
Length = 1230
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 27 atcagtgccgccgg 40
||||||||||||||
Sbjct: 69 atcagtgccgccgg 82
>ISMsm12
Length = 3256
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 65 ggtggccagcgtca 78
||||||||||||||
Sbjct: 1815 ggtggccagcgtca 1802
>ISMesp2
Length = 1618
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 8 cgccgccgaaaagc 21
||||||||||||||
Sbjct: 559 cgccgccgaaaagc 572
>ISMdi18
Length = 3479
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 89 gctggaaaagacgc 102
||||||||||||||
Sbjct: 1839 gctggaaaagacgc 1852
>ISTha2
Length = 1268
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 127 cgacccgcaaggtg 140
||||||||||||||
Sbjct: 1164 cgacccgcaaggtg 1177
>ISAcma14
Length = 1138
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 80 actggccaagctgg 93
||||||||||||||
Sbjct: 794 actggccaagctgg 807
>ISAfe9
Length = 2503
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 81 ctggccaagctgga 94
||||||||||||||
Sbjct: 2080 ctggccaagctgga 2093
>ISGdi7
Length = 1518
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 181 gcgaaattctcgcc 194
||||||||||||||
Sbjct: 854 gcgaaattctcgcc 841
>ISAli11
Length = 1739
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 130 cccgcaaggtgtcg 143
||||||||||||||
Sbjct: 808 cccgcaaggtgtcg 795
>ISAli4
Length = 1324
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 206 cgcccatgccgccc 219
||||||||||||||
Sbjct: 466 cgcccatgccgccc 479
>ISJsp2
Length = 1045
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 202 gcgccgcccatgcc 215
||||||||||||||
Sbjct: 687 gcgccgcccatgcc 700
>ISOgr3
Length = 1052
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 54 atggcgcccgcggt 67
||||||||||||||
Sbjct: 763 atggcgcccgcggt 750
>ISRusp1
Length = 1051
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 54 atggcgcccgcggt 67
||||||||||||||
Sbjct: 763 atggcgcccgcggt 750
>ISRhosp5
Length = 1335
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 63 gcggtggccagcgt 76
||||||||||||||
Sbjct: 1296 gcggtggccagcgt 1283
>IS885
Length = 1100
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 63 gcggtggccagcgt 76
||||||||||||||
Sbjct: 214 gcggtggccagcgt 227
>ISH10
Length = 1584
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 8 cgccgccgaaaagc 21
||||||||||||||
Sbjct: 1096 cgccgccgaaaagc 1109
>IS220
Length = 3257
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 65 ggtggccagcgtca 78
||||||||||||||
Sbjct: 1815 ggtggccagcgtca 1802
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_414_length_230_cov_0.954248_ID_5996
(230 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISBmu30 | IS66 | Burkholderia multivorans | 38 | 0.005 | |
| IS476 | IS3 | IS407 | Xanthomonas campestris | 38 | 0.005 |
| ISPa43 | Tn3 | Pseudomonas aeruginosa | 32 | 0.29 | |
| ISCARN22 | IS66 | Metagenomic data from CARNOULES | 32 | 0.29 | |
| ISAzo4 | IS21 | Azoarcus sp. | 32 | 0.29 | |
| IS900 | IS110 | - | Mycobacterium paratuberculosis | 32 | 0.29 |
| ISSis5 | IS607 | Sulfolobus islandicus | 30 | 1.1 | |
| ISAzs20 | IS66 | Azospirillum sp. | 30 | 1.1 | |
| ISRhba1 | IS1595 | ISNwi1 | Rhodobacterales bacterium | 30 | 1.1 |
| ISRso8 | IS3 | - | Ralstonia solanacearum | 30 | 1.1 |
| ISRso14 | IS3 | IS407 | Ralstonia solanacearum | 30 | 1.1 |
| IS401 | IS3 | IS51 | Burkholderia cepacia | 30 | 1.1 |
| ISHhu13 | IS200/IS605 | IS1341 | Halobacterium hubeiense | 28 | 4.5 |
| ISMyma9 | IS21 | Mycobacterium marinum | 28 | 4.5 | |
| ISGpo1 | IS256 | Gordonia polyisoprenivorans | 28 | 4.5 | |
| ISAzs29 | Tn3 | Azospirillum sp. | 28 | 4.5 | |
| ISRel16 | IS21 | Rhizobium etli | 28 | 4.5 | |
| ISGau8 | IS30 | Gemmatimonas aurantiaca | 28 | 4.5 | |
| ISMtsp6 | IS110 | IS1111 | Methylobacterium sp. | 28 | 4.5 |
| ISMch6 | IS110 | Methylobacterium chloromethanicum | 28 | 4.5 | |
| ISMch1 | IS3 | IS150 | Methylobacterium chloromethanicum | 28 | 4.5 |
| ISAnsp11 | IS3 | IS3 | Anaeromyxobacter sp. | 28 | 4.5 |
| ISMdi26 | IS5 | IS1031 | Methylobacterium dichloromethanicum | 28 | 4.5 |
| ISSav5 | IS481 | Streptomyces avermitilis | 28 | 4.5 | |
| ISMex22 | Tn3 | Methylobacterium extorquens | 28 | 4.5 | |
| ISAzo40 | IS1380 | Azoarcus sp. | 28 | 4.5 | |
| ISOih2 | IS200/IS605 | IS200 | Oceanobacillus iheyensis | 28 | 4.5 |
| ISAzo12 | IS21 | Azoarcus sp. | 28 | 4.5 | |
| ISCARN26 | IS110 | Metagenomic data from CARNOULES | 28 | 4.5 | |
| ISXau4 | IS66 | Xanthobacter autotrophicus | 28 | 4.5 | |
| ISFpe1 | IS66 | Fulvimarina pelagi | 28 | 4.5 | |
| ISMno3 | IS66 | ISBst12 | Methylobacterium nodulans | 28 | 4.5 |
| ISGsp3 | ISLre2 | Geobacillus sp. | 28 | 4.5 | |
| ISBcen9 | IS3 | IS150 | Burkholderia cenocepacia | 28 | 4.5 |
| ISXax1 | IS256 | Xanthomonas axonopodis | 28 | 4.5 | |
| ISAli15 | IS66 | Azospirillum lipoferum | 28 | 4.5 | |
| ISXcd1 | IS3 | IS407 | Xanthomonas axonopodis | 28 | 4.5 |
| IS657 | IS200/IS605 | IS200 | Bacillus halodurans | 28 | 4.5 |
| IS1632 | IS256 | - | Bradyrhizobium japonicum | 28 | 4.5 |
>ISBmu30
Length = 2344
Score = 38.2 bits (19), Expect = 0.005
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 151 gcagcaggcggacctgttc 169
|||||||||||||||||||
Sbjct: 669 gcagcaggcggacctgttc 651
>IS476
Length = 1226
Score = 38.2 bits (19), Expect = 0.005
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 58 cgatcaggcggcgtgtttc 76
|||||||||||||||||||
Sbjct: 825 cgatcaggcggcgtgtttc 843
>ISPa43
Length = 19903
Score = 32.2 bits (16), Expect = 0.29
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 56 aacgatcaggcggcgt 71
||||||||||||||||
Sbjct: 3407 aacgatcaggcggcgt 3422
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 215 ggcgcgcagagcga 228
||||||||||||||
Sbjct: 8740 ggcgcgcagagcga 8727
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 66 cggcgtgtttcgtc 79
||||||||||||||
Sbjct: 17270 cggcgtgtttcgtc 17257
>ISCARN22
Length = 2674
Score = 32.2 bits (16), Expect = 0.29
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 165 tgttcgagtgcggccg 180
||||||||||||||||
Sbjct: 1081 tgttcgagtgcggccg 1066
>ISAzo4
Length = 2757
Score = 32.2 bits (16), Expect = 0.29
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 197 cgccacgaagcgttcg 212
||||||||||||||||
Sbjct: 1159 cgccacgaagcgttcg 1174
>IS900
Length = 1451
Score = 32.2 bits (16), Expect = 0.29
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 210 tcgccggcgcgcagag 225
||||||||||||||||
Sbjct: 615 tcgccggcgcgcagag 600
>ISSis5
Length = 1935
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 1 aatcaagcacgcggt 15
|||||||||||||||
Sbjct: 1434 aatcaagcacgcggt 1420
>ISAzs20
Length = 2811
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 118 cgagccgccagccgg 132
|||||||||||||||
Sbjct: 1918 cgagccgccagccgg 1932
>ISRhba1
Length = 2457
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 149 ccgcagcaggcggac 163
|||||||||||||||
Sbjct: 1492 ccgcagcaggcggac 1506
>ISRso8
Length = 1287
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 157 ggcggacctgttcga 171
|||||||||||||||
Sbjct: 172 ggcggacctgttcga 158
>ISRso14
Length = 1234
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 128 gccggcctcggcctc 142
|||||||||||||||
Sbjct: 1107 gccggcctcggcctc 1121
>IS401
Length = 1316
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 122 ccgccagccggcctc 136
|||||||||||||||
Sbjct: 925 ccgccagccggcctc 939
>ISHhu13
Length = 1374
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 153 agcaggcggacctg 166
||||||||||||||
Sbjct: 175 agcaggcggacctg 188
>ISMyma9
Length = 2162
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 135 tcggcctcaccggg 148
||||||||||||||
Sbjct: 1330 tcggcctcaccggg 1317
>ISGpo1
Length = 1432
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 214 cggcgcgcagagcg 227
||||||||||||||
Sbjct: 236 cggcgcgcagagcg 223
>ISAzs29
Length = 3897
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 210 tcgccggcgcgcag 223
||||||||||||||
Sbjct: 2284 tcgccggcgcgcag 2271
>ISRel16
Length = 2597
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 106 cctcgatcgcctcg 119
||||||||||||||
Sbjct: 2389 cctcgatcgcctcg 2402
>ISGau8
Length = 1364
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 22 gaaggagctcacgc 35
||||||||||||||
Sbjct: 676 gaaggagctcacgc 689
>ISMtsp6
Length = 1495
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 210 tcgccggcgcgcag 223
||||||||||||||
Sbjct: 448 tcgccggcgcgcag 435
>ISMch6
Length = 1379
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 87 cggaagacggcggt 100
||||||||||||||
Sbjct: 701 cggaagacggcggt 714
>ISMch1
Length = 1294
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 104 gccctcgatcgcct 117
||||||||||||||
Sbjct: 216 gccctcgatcgcct 203
>ISAnsp11
Length = 1510
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 214 cggcgcgcagagcg 227
||||||||||||||
Sbjct: 382 cggcgcgcagagcg 395
>ISMdi26
Length = 859
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 121 gccgccagccggcc 134
||||||||||||||
Sbjct: 539 gccgccagccggcc 526
>ISSav5
Length = 1953
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 128 gccggcctcggcct 141
||||||||||||||
Sbjct: 1596 gccggcctcggcct 1609
>ISMex22
Length = 3864
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 210 tcgccggcgcgcag 223
||||||||||||||
Sbjct: 516 tcgccggcgcgcag 529
>ISAzo40
Length = 1694
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 107 ctcgatcgcctcga 120
||||||||||||||
Sbjct: 300 ctcgatcgcctcga 287
>ISOih2
Length = 740
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 128 gccggcctcggcct 141
||||||||||||||
Sbjct: 686 gccggcctcggcct 673
>ISAzo12
Length = 3075
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 104 gccctcgatcgcct 117
||||||||||||||
Sbjct: 1916 gccctcgatcgcct 1903
>ISCARN26
Length = 1214
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 109 cgatcgcctcgagc 122
||||||||||||||
Sbjct: 745 cgatcgcctcgagc 732
>ISXau4
Length = 2458
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 145 cgggccgcagcagg 158
||||||||||||||
Sbjct: 1576 cgggccgcagcagg 1563
>ISFpe1
Length = 2489
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 100 tgccgccctcgatc 113
||||||||||||||
Sbjct: 1448 tgccgccctcgatc 1435
>ISMno3
Length = 1364
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 157 ggcggacctgttcg 170
||||||||||||||
Sbjct: 544 ggcggacctgttcg 557
>ISGsp3
Length = 1709
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 130 cggcctcggcctca 143
||||||||||||||
Sbjct: 1395 cggcctcggcctca 1408
>ISBcen9
Length = 1439
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 119 gagccgccagccgg 132
||||||||||||||
Sbjct: 1160 gagccgccagccgg 1147
>ISXax1
Length = 1329
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 106 cctcgatcgcctcg 119
||||||||||||||
Sbjct: 814 cctcgatcgcctcg 801
>ISAli15
Length = 2658
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 127 agccggcctcggcc 140
||||||||||||||
Sbjct: 2127 agccggcctcggcc 2114
>ISXcd1
Length = 1195
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 128 gccggcctcggcct 141
||||||||||||||
Sbjct: 132 gccggcctcggcct 119
>IS657
Length = 734
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 128 gccggcctcggcct 141
||||||||||||||
Sbjct: 682 gccggcctcggcct 669
>IS1632
Length = 1394
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 59 gatcaggcggcgtg 72
||||||||||||||
Sbjct: 1365 gatcaggcggcgtg 1352
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_415_length_230_cov_0.777778_ID_5998
(230 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISNpe15 | IS5 | Natrinema pellirubrum | 30 | 1.1 | |
| ISAde4 | IS3 | IS407 | Anaeromyxobacter dehalogenans | 30 | 1.1 |
| ISCARN79 | IS1380 | Metagenomic data from CARNOULES | 30 | 1.1 | |
| ISBj7_B | IS66 | Bradyrhizobium japonicum | 30 | 1.1 | |
| ISMva4 | IS256 | Mycobacterium vanbaalenii | 28 | 4.5 | |
| ISMrh1 | IS256 | Mycobacterium rhodesiae | 28 | 4.5 | |
| ISRer3 | IS256 | Rhodococcus erythropolis | 28 | 4.5 | |
| ISMno13 | IS66 | Methylobacterium nodulans | 28 | 4.5 | |
| ISCph6 | IS1380 | Chlorobium phaeobacteroides | 28 | 4.5 | |
| ISMdi13 | IS256 | Methylobacterium dichloromethanicum | 28 | 4.5 | |
| ISMex24 | ISL3 | Methylobacterium extorquens | 28 | 4.5 | |
| ISCARN49 | IS21 | Metagenomic data from CARNOULES | 28 | 4.5 | |
| ISSav3 | IS701 | Streptomyces avermitilis | 28 | 4.5 | |
| ISSod2 | IS3 | IS407 | Shewanella oneidensis | 28 | 4.5 |
| ISXo7 | IS630 | - | Xanthomonas oryzae | 28 | 4.5 |
| ISPa42 | Tn3 | Pseudomonas aeruginosa | 28 | 4.5 | |
| IS1415 | IS21 | - | Rhodococcus erythropolis | 28 | 4.5 |
| IS1247 | IS1380 | - | Xanthobacter autotrophicus | 28 | 4.5 |
| IS1166 | IS256 | - | Rhodococcus sp. | 28 | 4.5 |
>ISNpe15
Length = 1069
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 56 catgtcgtcgacgat 70
|||||||||||||||
Sbjct: 377 catgtcgtcgacgat 391
>ISAde4
Length = 1183
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 144 gcacgacgcgcgccc 158
|||||||||||||||
Sbjct: 813 gcacgacgcgcgccc 799
>ISCARN79
Length = 1663
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 45 ttcgcagcgatcatg 59
|||||||||||||||
Sbjct: 1389 ttcgcagcgatcatg 1403
>ISBj7_B
Length = 2865
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 51 gcgatcatgtcgtcg 65
|||||||||||||||
Sbjct: 501 gcgatcatgtcgtcg 487
>ISMva4
Length = 1458
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 53 gatcatgtcgtcga 66
||||||||||||||
Sbjct: 446 gatcatgtcgtcga 433
>ISMrh1
Length = 1472
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 59 gtcgtcgacgatct 72
||||||||||||||
Sbjct: 1118 gtcgtcgacgatct 1105
>ISRer3
Length = 1471
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 59 gtcgtcgacgatct 72
||||||||||||||
Sbjct: 1117 gtcgtcgacgatct 1104
>ISMno13
Length = 2459
Score = 28.2 bits (14), Expect = 4.5
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 121 ggtcgacatcgagtgccc 138
||||||||||||| ||||
Sbjct: 1234 ggtcgacatcgagagccc 1251
>ISCph6
Length = 1778
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 180 gggttggtcagtgt 193
||||||||||||||
Sbjct: 135 gggttggtcagtgt 122
>ISMdi13
Length = 1416
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 74 gatctgctgctcga 87
||||||||||||||
Sbjct: 770 gatctgctgctcga 783
>ISMex24
Length = 1677
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 64 cgacgatctggatc 77
||||||||||||||
Sbjct: 705 cgacgatctggatc 692
>ISCARN49
Length = 2630
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 40 ccaccttcgcagcg 53
||||||||||||||
Sbjct: 209 ccaccttcgcagcg 196
>ISSav3
Length = 1400
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 58 tgtcgtcgacgatc 71
||||||||||||||
Sbjct: 363 tgtcgtcgacgatc 350
>ISSod2
Length = 1186
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 183 ttggtcagtgtttt 196
||||||||||||||
Sbjct: 525 ttggtcagtgtttt 538
>ISXo7
Length = 1114
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 40 ccaccttcgcagcg 53
||||||||||||||
Sbjct: 1011 ccaccttcgcagcg 1024
>ISPa42
Length = 16941
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 71 ctggatctgctgct 84
||||||||||||||
Sbjct: 3280 ctggatctgctgct 3293
>IS1415
Length = 2580
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 57 atgtcgtcgacgat 70
||||||||||||||
Sbjct: 2216 atgtcgtcgacgat 2203
>IS1247
Length = 1672
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 104 cgctgtcctgacca 117
||||||||||||||
Sbjct: 31 cgctgtcctgacca 44
>IS1166
Length = 1469
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 59 gtcgtcgacgatct 72
||||||||||||||
Sbjct: 1116 gtcgtcgacgatct 1103
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_416_length_230_cov_0.69281_ID_6000
(230 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISBmu30 | IS66 | Burkholderia multivorans | 32 | 0.29 | |
| ISMrsp1 | IS1595 | ISPna2 | Marinobacter sp. | 32 | 0.29 |
| ISHgi1 | IS200/IS605 | IS605 | Haloferax gibbonsii | 30 | 1.1 |
| ISSoc14 | IS200/IS605 | IS1341 | Synechococcus sp | 28 | 4.5 |
| ISSri1 | ISKra4 | ISKra4 | Streptomyces rimosus | 28 | 4.5 |
| ISPfe2 | IS1634 | Paracoccus ferrooxidans | 28 | 4.5 | |
| ISBmu23 | IS5 | IS5 | Burkholderia multivorans | 28 | 4.5 |
| ISPsp5 | IS1182 | Pseudomonas sp. | 28 | 4.5 | |
| ISSisp1 | IS3 | IS407 | Silicibacter sp. | 28 | 4.5 |
| ISXau1 | IS3 | IS407 | Xanthobacter autotrophicus | 28 | 4.5 |
| ISMxa1 | IS3 | IS3 | Myxococcus xanthus | 28 | 4.5 |
| ISArch8 | IS1634 | Uncultured archaeon | 28 | 4.5 | |
| ISAs3 | IS256 | Aeromonas salmonicida | 28 | 4.5 | |
| IS493 | IS5 | ISL2 | Streptomyces lividans | 28 | 4.5 |
| IS401 | IS3 | IS51 | Burkholderia cepacia | 28 | 4.5 |
| IS117 | IS110 | - | Streptomyces coelicolor | 28 | 4.5 |
>ISBmu30
Length = 2344
Score = 32.2 bits (16), Expect = 0.29
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 137 gtcaaggcggacaagg 152
||||||||||||||||
Sbjct: 1566 gtcaaggcggacaagg 1581
>ISMrsp1
Length = 1035
Score = 32.2 bits (16), Expect = 0.29
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 171 tgtccggcatcatcga 186
||||||||||||||||
Sbjct: 498 tgtccggcatcatcga 513
>ISHgi1
Length = 1870
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 26 cgtgcggtgaagcgg 40
|||||||||||||||
Sbjct: 599 cgtgcggtgaagcgg 585
>ISSoc14
Length = 1370
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 143 gcggacaaggtaca 156
||||||||||||||
Sbjct: 93 gcggacaaggtaca 80
>ISSri1
Length = 2269
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 214 ggtgaccaaggggc 227
||||||||||||||
Sbjct: 626 ggtgaccaaggggc 639
>ISPfe2
Length = 1884
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 31 ggtgaagcggctgt 44
||||||||||||||
Sbjct: 1313 ggtgaagcggctgt 1300
>ISBmu23
Length = 1210
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 210 agcgggtgaccaag 223
||||||||||||||
Sbjct: 134 agcgggtgaccaag 147
>ISPsp5
Length = 1617
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 211 gcgggtgaccaagg 224
||||||||||||||
Sbjct: 1095 gcgggtgaccaagg 1108
>ISSisp1
Length = 1236
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 103 ggcaggccgctttg 116
||||||||||||||
Sbjct: 472 ggcaggccgctttg 485
>ISXau1
Length = 1272
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 30 cggtgaagcggctg 43
||||||||||||||
Sbjct: 86 cggtgaagcggctg 73
>ISMxa1
Length = 1292
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 206 aaccagcgggtgac 219
||||||||||||||
Sbjct: 1221 aaccagcgggtgac 1208
>ISArch8
Length = 1923
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 112 ctttgtagagaccg 125
||||||||||||||
Sbjct: 400 ctttgtagagaccg 413
>ISAs3
Length = 1326
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 205 gaaccagcgggtga 218
||||||||||||||
Sbjct: 603 gaaccagcgggtga 616
>IS493
Length = 1643
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 175 cggcatcatcgaca 188
||||||||||||||
Sbjct: 1343 cggcatcatcgaca 1356
>IS401
Length = 1316
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 165 ccgaagtgtccggc 178
||||||||||||||
Sbjct: 710 ccgaagtgtccggc 697
>IS117
Length = 2527
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 30 cggtgaagcggctg 43
||||||||||||||
Sbjct: 833 cggtgaagcggctg 846
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_417_length_230_cov_0.705882_ID_6002
(230 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| IS1136 | IS200/IS605 | IS1341 | Saccharopolyspora erythraea | 36 | 0.018 |
| ISAzs3 | IS1380 | Azospirillum sp. | 32 | 0.29 | |
| ISMno10 | IS1182 | Methylobacterium nodulans | 30 | 1.1 | |
| ISArsp6 | Tn3 | Arthrobacter sp. | 30 | 1.1 | |
| ISEc19 | IS481 | Escherichia coli | 30 | 1.1 | |
| ISRm1 | IS3 | IS2 | Rhizobium meliloti | 30 | 1.1 |
| TnAs3 | Tn3 | Aeromonas salmonicida | 28 | 4.5 | |
| ISRel26 | ISNCY | IS1202 | Rhizobium etli | 28 | 4.5 |
| ISDere1 | ISKra4 | ISKra4 | Desulfohalobium retbaense | 28 | 4.5 |
| ISDsu1 | ISLre2 | Dialister succinatiphilus | 28 | 4.5 | |
| ISCau1 | IS256 | IS1249 | Corynebacterium aurimucosum | 28 | 4.5 |
| ISAzs13 | ISL3 | Azospirillum sp. | 28 | 4.5 | |
| ISDba1 | IS3 | IS407 | Desulfomicrobium baculatum | 28 | 4.5 |
| ISMno31 | IS3 | IS150 | Methylobacterium nodulans | 28 | 4.5 |
| ISMpo6 | IS1182 | Methylobacterium populi | 28 | 4.5 | |
| ISCde1 | IS66 | Candidatus Desulforudis audaxviator | 28 | 4.5 | |
| ISYal1 | IS3 | IS407 | Yersinia aldovae | 28 | 4.5 |
| ISLsp5 | IS1380 | Leptospirillum sp. | 28 | 4.5 | |
| ISMsi5 | IS3 | IS3 | Methylocella silvestris | 28 | 4.5 |
| ISMdi2 | ISL3 | Methylobacterium dichloromethanicum | 28 | 4.5 | |
| ISCARN89 | IS21 | Metagenomic data from CARNOULES | 28 | 4.5 | |
| ISAzo9 | IS630 | Azoarcus sp. | 28 | 4.5 | |
| ISGbe1 | IS3 | IS407 | Granulibacter bethesdensis | 28 | 4.5 |
| ISAma2 | IS3 | IS407 | Alteromonas macleodii | 28 | 4.5 |
| ISMca1 | IS5 | Methylococcus capsulatus | 28 | 4.5 | |
| ISMyma2 | IS1380 | Mycobacterium marinum | 28 | 4.5 | |
| ISCc3 | IS3 | IS150 | Caulobacter crescentus | 28 | 4.5 |
| ISRm2 | IS66 | Sinorhizobium meliloti | 28 | 4.5 | |
| ISXfu1 | IS5 | IS5 | Xanthomonas fuscans | 28 | 4.5 |
| IS421 | IS4 | IS231 | Escherichia coli | 28 | 4.5 |
| IS186B | IS4 | IS231 | Escherichia coli | 28 | 4.5 |
| IS186A | IS4 | IS231 | Escherichia coli | 28 | 4.5 |
| IS1311 | IS256 | - | Mycobacterium avium | 28 | 4.5 |
| IS117 | IS110 | - | Streptomyces coelicolor | 28 | 4.5 |
| IS1051 | IS5 | IS5 | Xanthomonas campestris | 28 | 4.5 |
>IS1136
Length = 1402
Score = 36.2 bits (18), Expect = 0.018
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 109 gccgtcagcgcggcatcg 126
||||||||||||||||||
Sbjct: 295 gccgtcagcgcggcatcg 278
>ISAzs3
Length = 1613
Score = 32.2 bits (16), Expect = 0.29
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 107 ccgccgtcagcgcggc 122
||||||||||||||||
Sbjct: 1512 ccgccgtcagcgcggc 1527
>ISMno10
Length = 1749
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 50 gcaccagcgtccggc 64
|||||||||||||||
Sbjct: 861 gcaccagcgtccggc 875
>ISArsp6
Length = 26712
Score = 30.2 bits (15), Expect = 1.1
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 177 ggcgatgttgatgccggcg 195
||||||| |||||||||||
Sbjct: 2119 ggcgatggtgatgccggcg 2137
>ISEc19
Length = 1229
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 109 gccgtcagcgcggca 123
|||||||||||||||
Sbjct: 949 gccgtcagcgcggca 963
>ISRm1
Length = 1319
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 126 gatatcaatcgccgc 140
|||||||||||||||
Sbjct: 1244 gatatcaatcgccgc 1258
>TnAs3
Length = 18735
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 186 gatgccggcggcgg 199
||||||||||||||
Sbjct: 14795 gatgccggcggcgg 14808
>ISRel26
Length = 1634
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 116 gcgcggcatcgata 129
||||||||||||||
Sbjct: 239 gcgcggcatcgata 252
>ISDere1
Length = 1533
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 93 ccgcttcaaatcct 106
||||||||||||||
Sbjct: 898 ccgcttcaaatcct 911
>ISDsu1
Length = 1655
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 112 gtcagcgcggcatc 125
||||||||||||||
Sbjct: 1200 gtcagcgcggcatc 1213
>ISCau1
Length = 1449
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 44 cttaccgcaccagc 57
||||||||||||||
Sbjct: 164 cttaccgcaccagc 151
>ISAzs13
Length = 1769
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 104 cctccgccgtcagc 117
||||||||||||||
Sbjct: 1534 cctccgccgtcagc 1521
>ISDba1
Length = 1207
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 87 ccgcagccgcttca 100
||||||||||||||
Sbjct: 237 ccgcagccgcttca 224
>ISMno31
Length = 1510
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 106 tccgccgtcagcgc 119
||||||||||||||
Sbjct: 3 tccgccgtcagcgc 16
>ISMpo6
Length = 1593
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 89 gcagccgcttcaaa 102
||||||||||||||
Sbjct: 503 gcagccgcttcaaa 516
>ISCde1
Length = 2422
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 186 gatgccggcggcgg 199
||||||||||||||
Sbjct: 1297 gatgccggcggcgg 1310
>ISYal1
Length = 1187
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 39 aaccgcttaccgca 52
||||||||||||||
Sbjct: 733 aaccgcttaccgca 720
>ISLsp5
Length = 1759
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 106 tccgccgtcagcgc 119
||||||||||||||
Sbjct: 821 tccgccgtcagcgc 808
>ISMsi5
Length = 1228
Score = 28.2 bits (14), Expect = 4.5
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 87 ccgcagccgcttcaaatc 104
|||||| |||||||||||
Sbjct: 268 ccgcagacgcttcaaatc 251
>ISMdi2
Length = 1689
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 191 cggcggcggagacg 204
||||||||||||||
Sbjct: 527 cggcggcggagacg 514
>ISCARN89
Length = 2461
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 206 tgtcgttgattttg 219
||||||||||||||
Sbjct: 1597 tgtcgttgattttg 1584
>ISAzo9
Length = 1483
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 19 cgcacccagccaaa 32
||||||||||||||
Sbjct: 1444 cgcacccagccaaa 1457
>ISGbe1
Length = 1269
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 192 ggcggcggagacga 205
||||||||||||||
Sbjct: 1211 ggcggcggagacga 1224
>ISAma2
Length = 1192
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 39 aaccgcttaccgca 52
||||||||||||||
Sbjct: 736 aaccgcttaccgca 723
>ISMca1
Length = 1336
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 83 tcccccgcagccgc 96
||||||||||||||
Sbjct: 17 tcccccgcagccgc 30
>ISMyma2
Length = 1679
Score = 28.2 bits (14), Expect = 4.5
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 114 cagcgcggcatcgatatc 131
||||| ||||||||||||
Sbjct: 557 cagcgtggcatcgatatc 540
>ISCc3
Length = 1514
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 106 tccgccgtcagcgc 119
||||||||||||||
Sbjct: 3 tccgccgtcagcgc 16
>ISRm2
Length = 2593
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 182 tgttgatgccggcg 195
||||||||||||||
Sbjct: 594 tgttgatgccggcg 581
>ISXfu1
Length = 1162
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 57 cgtccggcacctca 70
||||||||||||||
Sbjct: 365 cgtccggcacctca 352
>IS421
Length = 1342
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 87 ccgcagccgcttca 100
||||||||||||||
Sbjct: 304 ccgcagccgcttca 291
>IS186B
Length = 1338
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 87 ccgcagccgcttca 100
||||||||||||||
Sbjct: 301 ccgcagccgcttca 288
>IS186A
Length = 1341
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 87 ccgcagccgcttca 100
||||||||||||||
Sbjct: 303 ccgcagccgcttca 290
>IS1311
Length = 1416
Score = 28.2 bits (14), Expect = 4.5
Identities = 20/22 (90%)
Strand = Plus / Minus
Query: 107 ccgccgtcagcgcggcatcgat 128
||||||||||| | ||||||||
Sbjct: 243 ccgccgtcagctccgcatcgat 222
>IS117
Length = 2527
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 87 ccgcagccgcttca 100
||||||||||||||
Sbjct: 849 ccgcagccgcttca 836
>IS1051
Length = 1158
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 57 cgtccggcacctca 70
||||||||||||||
Sbjct: 795 cgtccggcacctca 808
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_418_length_229_cov_0.960526_ID_6004
(229 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISRsp12 | Tn3 | Rhizhobium sp. | 32 | 0.29 | |
| ISLac1 | IS1182 | Lactobacillus acidophilus | 30 | 1.1 | |
| ISDvu2 | IS3 | IS2 | Desulfovibrio vulgaris | 30 | 1.1 |
| ISBlo5 | IS256 | Bifidobacterium longum | 30 | 1.1 | |
| ISBj7 | IS6 | Bradyrhizobium japonicum | 28 | 4.5 | |
| ISHhu2 | IS200/IS605 | Halobacterium hubeiense | 28 | 4.5 | |
| ISPa43 | Tn3 | Pseudomonas aeruginosa | 28 | 4.5 | |
| ISVsp12 | IS630 | Verrucomicrobium spinosum | 28 | 4.5 | |
| ISDha14 | IS5 | IS5 | Desulfitobacterium hafniense | 28 | 4.5 |
| ISAau1 | IS3 | IS407 | Arthrobacter aurescens | 28 | 4.5 |
| ISAzo23 | IS5 | IS1031 | Azoarcus sp. | 28 | 4.5 |
| ISAzca2 | IS66 | Azorhizobium caulinodans | 28 | 4.5 | |
| ISBad2 | IS3 | IS150 | Bifidobacterium adolescentis | 28 | 4.5 |
| ISTko1 | IS607 | Thermococcus kodakarensis | 28 | 4.5 | |
| IS408 | IS21 | - | Burkholderia cepacia | 28 | 4.5 |
| IS1535 | IS607 | Mycobacterium tuberculosis | 28 | 4.5 |
>ISRsp12
Length = 3701
Score = 32.2 bits (16), Expect = 0.29
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 71 gaaagatgttcttcaa 86
||||||||||||||||
Sbjct: 301 gaaagatgttcttcaa 286
>ISLac1
Length = 1835
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 72 aaagatgttcttcaa 86
|||||||||||||||
Sbjct: 1617 aaagatgttcttcaa 1603
>ISDvu2
Length = 1311
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 13 ttcggccgagaagcc 27
|||||||||||||||
Sbjct: 357 ttcggccgagaagcc 343
>ISBlo5
Length = 1366
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 5 gcgacctgttcggcc 19
|||||||||||||||
Sbjct: 1002 gcgacctgttcggcc 988
>ISBj7
Length = 824
Score = 28.2 bits (14), Expect = 4.5
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 163 ccatcacaagcgctatcg 180
|||| |||||||||||||
Sbjct: 745 ccatgacaagcgctatcg 762
>ISHhu2
Length = 1846
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 55 ttcgcccgactgca 68
||||||||||||||
Sbjct: 1412 ttcgcccgactgca 1425
>ISPa43
Length = 19903
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 150 gcagaaaagcgggc 163
||||||||||||||
Sbjct: 15759 gcagaaaagcgggc 15772
>ISVsp12
Length = 1125
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 211 atccggtcgccacc 224
||||||||||||||
Sbjct: 368 atccggtcgccacc 381
>ISDha14
Length = 1692
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 146 ccaagcagaaaagc 159
||||||||||||||
Sbjct: 878 ccaagcagaaaagc 891
>ISAau1
Length = 1257
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 86 agaagcgcctgaaa 99
||||||||||||||
Sbjct: 702 agaagcgcctgaaa 715
>ISAzo23
Length = 871
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 49 gaccgtttcgcccg 62
||||||||||||||
Sbjct: 573 gaccgtttcgcccg 560
>ISAzca2
Length = 2458
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 6 cgacctgttcggcc 19
||||||||||||||
Sbjct: 1102 cgacctgttcggcc 1089
>ISBad2
Length = 1470
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 5 gcgacctgttcggc 18
||||||||||||||
Sbjct: 490 gcgacctgttcggc 477
>ISTko1
Length = 1960
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 97 aaaagctggagagg 110
||||||||||||||
Sbjct: 998 aaaagctggagagg 1011
>IS408
Length = 2798
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 180 ggcctgacgcatcg 193
||||||||||||||
Sbjct: 328 ggcctgacgcatcg 341
>IS1535
Length = 2300
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 214 cggtcgccaccctc 227
||||||||||||||
Sbjct: 1526 cggtcgccaccctc 1539
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_419_length_229_cov_0.960526_ID_6006
(229 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISAzca2 | IS66 | Azorhizobium caulinodans | 36 | 0.018 | |
| ISMex35 | IS5 | IS5 | Methylobacterium extorquens | 34 | 0.072 |
| ISBad1 | IS21 | Bifidobacterium adolescentis | 34 | 0.072 | |
| ISHko3 | IS200/IS605 | Halorubrum kocurii | 30 | 1.1 | |
| ISSso6 | IS110 | IS1111 | Shigella sonnei | 30 | 1.1 |
| ISHoc2 | ISKra4 | ISKra4 | Haliangium ochraceum | 30 | 1.1 |
| ISStsp8 | IS5 | ISL2 | Streptomyces sp. | 30 | 1.1 |
| ISKol9 | IS3 | IS407 | Kosmotoga olearia | 30 | 1.1 |
| ISAar2 | IS110 | Arthrobacter arilaitensis | 30 | 1.1 | |
| ISAli20 | Tn3 | Azospirillum lipoferum | 30 | 1.1 | |
| ISRhosp7 | IS110 | Rhodococcus sp. | 30 | 1.1 | |
| ISSgr1 | IS110 | IS1111 | Streptomyces griseus | 30 | 1.1 |
| ISSam1 | IS110 | Streptomyces ambofaciens | 30 | 1.1 | |
| ISPpu5 | IS110 | IS1111 | Pseudomonas putida | 30 | 1.1 |
| IS1373 | IS5 | ISL2 | Streptomyces lividans | 30 | 1.1 |
| ISTsu1 | IS256 | Thermaerobacter subterraneus | 28 | 4.5 | |
| ISMno24 | IS91 | Methylobacterium nodulans | 28 | 4.5 | |
| ISPa119 | IS110 | IS1111 | Pseudomonas aeruginosa | 28 | 4.5 |
| ISAba30 | IS200/IS605 | Acinetobacter baumannii | 28 | 4.5 | |
| ISPa54 | IS5 | IS5 | Pseudomonas aeruginosa | 28 | 4.5 |
| ISStvi1 | ISAzo13 | Streptomyces violaceusniger | 28 | 4.5 | |
| ISMtu1 | IS256 | Mycobacterium tusciae | 28 | 4.5 | |
| ISAzs19 | IS256 | Azospirillum sp. | 28 | 4.5 | |
| ISStsp6 | IS5 | ISL2 | Streptomyces sp | 28 | 4.5 |
| ISNml3 | IS1182 | Nakamurella multipartita | 28 | 4.5 | |
| ISShes11 | Tn3 | Shewanella sp. | 28 | 4.5 | |
| ISPpa7 | IS66 | Paracoccus pantotrophus | 28 | 4.5 | |
| ISRhru6 | IS5 | IS1031 | Rhodospirillum rubrum | 28 | 4.5 |
| ISSwo2 | IS66 | Syntrophomonas wolfei | 28 | 4.5 | |
| ISMno5 | ISL3 | Methylobacterium nodulans | 28 | 4.5 | |
| ISArsp5 | IS110 | Arthrobacter sp. | 28 | 4.5 | |
| ISAar24 | IS3 | IS3 | Arthrobacter arilaitensis | 28 | 4.5 |
| ISGbr1 | IS1380 | Gordonia bronchialis | 28 | 4.5 | |
| IS682 | IS66 | Escherichia coli | 28 | 4.5 | |
| ISAnsp11 | IS3 | IS3 | Anaeromyxobacter sp. | 28 | 4.5 |
| ISMex38 | Tn3 | Methylobacterium extorquens | 28 | 4.5 | |
| ISMex8 | IS21 | Methylobacterium extorquens | 28 | 4.5 | |
| ISCARN81 | IS3 | IS3 | Metagenomic data from CARNOULES | 28 | 4.5 |
| ISDpr4 | IS66 | Delta proteobacterium | 28 | 4.5 | |
| ISRel3 | IS21 | Rhizobium etli | 28 | 4.5 | |
| ISEc23 | IS66 | Escherichia coli | 28 | 4.5 | |
| ISApr2 | IS1595 | ISSod11 | Alpha proteobacterium | 28 | 4.5 |
| ISSav2 | IS701 | Streptomyces avermitilis | 28 | 4.5 | |
| ISBlo8 | IS256 | Bifidobacterium longum | 28 | 4.5 | |
| ISRm2011-2 | IS630 | - | Rhizobium meliloti | 28 | 4.5 |
| ISPsy2 | IS5 | IS5 | Pseudomonas syringae | 28 | 4.5 |
| ISAav1 | IS21 | - | Acidovorax avenae | 28 | 4.5 |
| IS931 | IS256 | - | Burkholderia cepacia | 28 | 4.5 |
| IS1122 | IS481 | - | Clavibacter michiganensis | 28 | 4.5 |
>ISAzca2
Length = 2458
Score = 36.2 bits (18), Expect = 0.018
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 48 cctcgcccgccaccatcg 65
||||||||||||||||||
Sbjct: 465 cctcgcccgccaccatcg 482
>ISMex35
Length = 1294
Score = 34.2 bits (17), Expect = 0.072
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 40 cggcctgacctcgcccg 56
|||||||||||||||||
Sbjct: 182 cggcctgacctcgcccg 198
>ISBad1
Length = 2525
Score = 34.2 bits (17), Expect = 0.072
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 203 ggcccgcacgccggcca 219
|||||||||||||||||
Sbjct: 1223 ggcccgcacgccggcca 1207
>ISHko3
Length = 1862
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 113 cacggcggcggcggc 127
|||||||||||||||
Sbjct: 1475 cacggcggcggcggc 1489
>ISSso6
Length = 1518
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 125 ggcccgggcatgggc 139
|||||||||||||||
Sbjct: 518 ggcccgggcatgggc 532
>ISHoc2
Length = 1715
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 112 gcacggcggcggcgg 126
|||||||||||||||
Sbjct: 1340 gcacggcggcggcgg 1326
>ISStsp8
Length = 881
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 144 tcggtctggccgcgc 158
|||||||||||||||
Sbjct: 634 tcggtctggccgcgc 620
>ISKol9
Length = 1416
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 1 ccaggtgtacatgga 15
|||||||||||||||
Sbjct: 1261 ccaggtgtacatgga 1275
>ISAar2
Length = 1473
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 56 gccaccatcggcgcc 70
|||||||||||||||
Sbjct: 443 gccaccatcggcgcc 457
>ISAli20
Length = 3828
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 115 cggcggcggcggccc 129
|||||||||||||||
Sbjct: 2279 cggcggcggcggccc 2293
>ISRhosp7
Length = 1455
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 152 gccgcgcacctggcg 166
|||||||||||||||
Sbjct: 1136 gccgcgcacctggcg 1150
>ISSgr1
Length = 1544
Score = 30.2 bits (15), Expect = 1.1
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 52 gcccgccaccatcggcgcc 70
||||||| |||||||||||
Sbjct: 459 gcccgcctccatcggcgcc 477
>ISSam1
Length = 1489
Score = 30.2 bits (15), Expect = 1.1
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 52 gcccgccaccatcggcgcc 70
||||||| |||||||||||
Sbjct: 455 gcccgcctccatcggcgcc 473
>ISPpu5
Length = 1342
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 214 cggccagagcgccgt 228
|||||||||||||||
Sbjct: 945 cggccagagcgccgt 931
>IS1373
Length = 817
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 204 gcccgcacgccggcc 218
|||||||||||||||
Sbjct: 324 gcccgcacgccggcc 338
>ISTsu1
Length = 1315
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 54 ccgccaccatcggc 67
||||||||||||||
Sbjct: 871 ccgccaccatcggc 858
>ISMno24
Length = 2157
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 35 caggtcggcctgac 48
||||||||||||||
Sbjct: 972 caggtcggcctgac 985
>ISPa119
Length = 1378
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 203 ggcccgcacgccgg 216
||||||||||||||
Sbjct: 940 ggcccgcacgccgg 953
>ISAba30
Length = 1770
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 88 cctgcacaagacct 101
||||||||||||||
Sbjct: 1256 cctgcacaagacct 1269
>ISPa54
Length = 1159
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 154 cgcgcacctggcgc 167
||||||||||||||
Sbjct: 439 cgcgcacctggcgc 452
>ISStvi1
Length = 1738
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 156 cgcacctggcgccc 169
||||||||||||||
Sbjct: 670 cgcacctggcgccc 683
>ISMtu1
Length = 1474
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 202 cggcccgcacgccg 215
||||||||||||||
Sbjct: 315 cggcccgcacgccg 302
>ISAzs19
Length = 1322
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 202 cggcccgcacgccg 215
||||||||||||||
Sbjct: 635 cggcccgcacgccg 622
>ISStsp6
Length = 1476
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 144 tcggtctggccgcg 157
||||||||||||||
Sbjct: 1228 tcggtctggccgcg 1215
>ISNml3
Length = 1798
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 148 tctggccgcgcacc 161
||||||||||||||
Sbjct: 153 tctggccgcgcacc 166
>ISShes11
Length = 7669
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 22 caacatgaacgccc 35
||||||||||||||
Sbjct: 1300 caacatgaacgccc 1313
>ISPpa7
Length = 2731
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 144 tcggtctggccgcg 157
||||||||||||||
Sbjct: 2086 tcggtctggccgcg 2073
>ISRhru6
Length = 941
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 113 cacggcggcggcgg 126
||||||||||||||
Sbjct: 678 cacggcggcggcgg 691
>ISSwo2
Length = 2446
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 21 ccaacatgaacgcc 34
||||||||||||||
Sbjct: 318 ccaacatgaacgcc 305
>ISMno5
Length = 1728
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 44 ctgacctcgcccgc 57
||||||||||||||
Sbjct: 1356 ctgacctcgcccgc 1369
>ISArsp5
Length = 1426
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 121 cggcggcccgggca 134
||||||||||||||
Sbjct: 438 cggcggcccgggca 425
>ISAar24
Length = 1270
Score = 28.2 bits (14), Expect = 4.5
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 105 gcatcccgcacggcggcg 122
|||||| |||||||||||
Sbjct: 804 gcatccagcacggcggcg 787
>ISGbr1
Length = 1645
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 51 cgcccgccaccatc 64
||||||||||||||
Sbjct: 327 cgcccgccaccatc 314
>IS682
Length = 2533
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 128 ccgggcatgggccc 141
||||||||||||||
Sbjct: 1969 ccgggcatgggccc 1956
>ISAnsp11
Length = 1510
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 30 acgcccaggtcggc 43
||||||||||||||
Sbjct: 1101 acgcccaggtcggc 1088
>ISMex38
Length = 3841
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 120 gcggcggcccgggc 133
||||||||||||||
Sbjct: 272 gcggcggcccgggc 259
>ISMex8
Length = 2597
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 55 cgccaccatcggcg 68
||||||||||||||
Sbjct: 516 cgccaccatcggcg 529
>ISCARN81
Length = 1406
Score = 28.2 bits (14), Expect = 4.5
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 149 ctggccgcgcacctggcg 166
||||||||||| ||||||
Sbjct: 563 ctggccgcgcatctggcg 580
>ISDpr4
Length = 2431
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 128 ccgggcatgggccc 141
||||||||||||||
Sbjct: 1842 ccgggcatgggccc 1829
>ISRel3
Length = 2308
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 24 acatgaacgcccag 37
||||||||||||||
Sbjct: 893 acatgaacgcccag 906
>ISEc23
Length = 2532
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 128 ccgggcatgggccc 141
||||||||||||||
Sbjct: 1968 ccgggcatgggccc 1955
>ISApr2
Length = 1029
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 115 cggcggcggcggcc 128
||||||||||||||
Sbjct: 555 cggcggcggcggcc 568
>ISSav2
Length = 1938
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 28 gaacgcccaggtcg 41
||||||||||||||
Sbjct: 1013 gaacgcccaggtcg 1026
>ISBlo8
Length = 1408
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 117 gcggcggcggcccg 130
||||||||||||||
Sbjct: 1013 gcggcggcggcccg 1026
>ISRm2011-2
Length = 1053
Score = 28.2 bits (14), Expect = 4.5
Identities = 20/22 (90%)
Strand = Plus / Plus
Query: 40 cggcctgacctcgcccgccacc 61
||||| ||| ||||||||||||
Sbjct: 465 cggcccgacgtcgcccgccacc 486
>ISPsy2
Length = 1194
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 61 catcggcgccgacg 74
||||||||||||||
Sbjct: 601 catcggcgccgacg 614
>ISAav1
Length = 2532
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 25 catgaacgcccagg 38
||||||||||||||
Sbjct: 1999 catgaacgcccagg 1986
>IS931
Length = 1477
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 28 gaacgcccaggtcg 41
||||||||||||||
Sbjct: 806 gaacgcccaggtcg 819
>IS1122
Length = 1068
Score = 28.2 bits (14), Expect = 4.5
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 107 atcccgcacggcggcggc 124
|||||| |||||||||||
Sbjct: 559 atcccggacggcggcggc 576
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_420_length_229_cov_0.651316_ID_6008
(229 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISMtsp6 | IS110 | IS1111 | Methylobacterium sp. | 30 | 1.1 |
| ISArsp4 | IS256 | Arthrobacter sp. | 30 | 1.1 | |
| ISMav6 | IS110 | Mycobacterium avium | 30 | 1.1 | |
| ISAzo2 | IS1182 | Azoarcus sp. | 30 | 1.1 | |
| ISCARN6 | IS200/IS605 | Metagenomic data from CARNOULES | 30 | 1.1 | |
| ISAzvi4 | IS110 | IS1111 | Azotobacter vinelandii | 30 | 1.1 |
| ISPath1 | IS110 | IS1111 | Pandoraea thiooxydans | 28 | 4.5 |
| ISPa55 | IS110 | IS1111 | Pseudomonas aeruginosa | 28 | 4.5 |
| ISSm4 | ISL3 | Serratia marcescens | 28 | 4.5 | |
| ISBibr1 | IS256 | IS1249 | Bifidobacterium breve | 28 | 4.5 |
| ISPa43 | Tn3 | Pseudomonas aeruginosa | 28 | 4.5 | |
| ISRel19 | IS66 | Rhizobium etli | 28 | 4.5 | |
| ISMpo8 | IS5 | IS427 | Methylobacterium populi | 28 | 4.5 |
| ISAtu6 | IS66 | - | Agrobacterium tumefaciens | 28 | 4.5 |
| ISAnsp6 | IS1182 | Anaeromyxobacter sp. | 28 | 4.5 | |
| ISMex4 | IS1380 | Methylobacterium extorquens | 28 | 4.5 | |
| ISThsp12 | IS1634 | Thiomonas sp. | 28 | 4.5 | |
| ISCARN20 | IS110 | Metagenomic data from CARNOULES | 28 | 4.5 | |
| ISBj7_B | IS66 | Bradyrhizobium japonicum | 28 | 4.5 | |
| ISThsp1 | IS1182 | Thiomonas sp. | 28 | 4.5 | |
| ISVch3 | IS21 | Vibrio cholerae | 28 | 4.5 | |
| ISBvu4 | IS66 | Bacteroides vulgatus | 28 | 4.5 | |
| ISPosp2 | IS701 | Polaromonas sp. | 28 | 4.5 | |
| ISSpo1 | IS110 | IS1111 | Silicibacter pomeroyi | 28 | 4.5 |
| IS902 | IS110 | - | Mycobacterium avium | 28 | 4.5 |
| IS901 | IS110 | - | Mycobacterium avium | 28 | 4.5 |
| IS1415 | IS21 | - | Rhodococcus erythropolis | 28 | 4.5 |
| IS1246 | IS5 | IS5 | Pseudomonas putida | 28 | 4.5 |
| IS1131 | IS66 | - | Agrobacterium tumefaciens | 28 | 4.5 |
>ISMtsp6
Length = 1495
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 125 gatctcgcgcacccg 139
|||||||||||||||
Sbjct: 1067 gatctcgcgcacccg 1053
>ISArsp4
Length = 1400
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 1 cgaccggcccggtgg 15
|||||||||||||||
Sbjct: 354 cgaccggcccggtgg 368
>ISMav6
Length = 1472
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 114 ttgccgccggtgatc 128
|||||||||||||||
Sbjct: 1104 ttgccgccggtgatc 1090
>ISAzo2
Length = 1545
Score = 30.2 bits (15), Expect = 1.1
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 8 cccggtggcgttgccgtag 26
||||||||||| |||||||
Sbjct: 280 cccggtggcgtagccgtag 262
>ISCARN6
Length = 1856
Score = 30.2 bits (15), Expect = 1.1
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 196 ccaacgccgcattttcatc 214
|||| ||||||||||||||
Sbjct: 1711 ccaaagccgcattttcatc 1693
>ISAzvi4
Length = 1351
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 186 tgcgccttggccaac 200
|||||||||||||||
Sbjct: 1007 tgcgccttggccaac 1021
>ISPath1
Length = 1357
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 82 tgccgatcgagtcg 95
||||||||||||||
Sbjct: 938 tgccgatcgagtcg 925
>ISPa55
Length = 1543
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 128 ctcgcgcacccggt 141
||||||||||||||
Sbjct: 492 ctcgcgcacccggt 479
>ISSm4
Length = 9109
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 109 cgcccttgccgccg 122
||||||||||||||
Sbjct: 7432 cgcccttgccgccg 7419
>ISBibr1
Length = 1622
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 4 ccggcccggtggcg 17
||||||||||||||
Sbjct: 985 ccggcccggtggcg 998
>ISPa43
Length = 19903
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 48 cgcaggcagctgag 61
||||||||||||||
Sbjct: 3745 cgcaggcagctgag 3758
>ISRel19
Length = 2798
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 79 ccttgccgatcgag 92
||||||||||||||
Sbjct: 1407 ccttgccgatcgag 1420
>ISMpo8
Length = 849
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 109 cgcccttgccgccg 122
||||||||||||||
Sbjct: 803 cgcccttgccgccg 816
>ISAtu6
Length = 2798
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 79 ccttgccgatcgag 92
||||||||||||||
Sbjct: 1407 ccttgccgatcgag 1420
>ISAnsp6
Length = 1515
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 38 gccccgcggccgca 51
||||||||||||||
Sbjct: 740 gccccgcggccgca 753
>ISMex4
Length = 1615
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 100 ccaccggtacgccc 113
||||||||||||||
Sbjct: 1099 ccaccggtacgccc 1112
>ISThsp12
Length = 2004
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 10 cggtggcgttgccg 23
||||||||||||||
Sbjct: 577 cggtggcgttgccg 590
>ISCARN20
Length = 1628
Score = 28.2 bits (14), Expect = 4.5
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 112 ccttgccgccggtgatct 129
||||||||||| ||||||
Sbjct: 1272 ccttgccgccgctgatct 1255
>ISBj7_B
Length = 2865
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 32 catcatgccccgcg 45
||||||||||||||
Sbjct: 2339 catcatgccccgcg 2326
>ISThsp1
Length = 1539
Score = 28.2 bits (14), Expect = 4.5
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 8 cccggtggcgttgccgta 25
||||||||||| ||||||
Sbjct: 287 cccggtggcgtagccgta 270
>ISVch3
Length = 2593
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 10 cggtggcgttgccg 23
||||||||||||||
Sbjct: 2413 cggtggcgttgccg 2400
>ISBvu4
Length = 2371
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 1 cgaccggcccggtg 14
||||||||||||||
Sbjct: 1516 cgaccggcccggtg 1529
>ISPosp2
Length = 1484
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 110 gcccttgccgccgg 123
||||||||||||||
Sbjct: 765 gcccttgccgccgg 778
>ISSpo1
Length = 1363
Score = 28.2 bits (14), Expect = 4.5
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 71 gaaggtgtccttgccgat 88
|||||| |||||||||||
Sbjct: 135 gaaggtttccttgccgat 118
>IS902
Length = 1470
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 114 ttgccgccggtgat 127
||||||||||||||
Sbjct: 1100 ttgccgccggtgat 1087
>IS901
Length = 1472
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 114 ttgccgccggtgat 127
||||||||||||||
Sbjct: 1104 ttgccgccggtgat 1091
>IS1415
Length = 2580
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 133 gcacccggtcggcg 146
||||||||||||||
Sbjct: 1304 gcacccggtcggcg 1291
>IS1246
Length = 1275
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 86 gatcgagtcgtaca 99
||||||||||||||
Sbjct: 165 gatcgagtcgtaca 178
>IS1131
Length = 2773
Score = 28.2 bits (14), Expect = 4.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 79 ccttgccgatcgag 92
||||||||||||||
Sbjct: 1404 ccttgccgatcgag 1417
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_421_length_228_cov_0.966887_ID_6010
(228 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISRaq1 | IS3 | IS407 | Rahnella aquatilis | 34 | 0.072 |
| ISSpu22 | IS110 | IS1111 | Shewanella putrefaciens | 30 | 1.1 |
| ISKpn23 | IS1380 | Klebsiella pneumoniae | 28 | 4.4 | |
| ISBj11 | IS21 | Bradyrhizobium japonicum | 28 | 4.4 | |
| ISHvo10 | IS110 | IS1111 | Haloferax volcanii | 28 | 4.4 |
| ISPsy30 | Tn3 | Pseudomonas syringae | 28 | 4.4 | |
| ISTel4 | IS5 | IS427 | Thermosynechococcus elongatus | 28 | 4.4 |
| ISPfr17 | IS481 | Propionibacterium freudenreichii | 28 | 4.4 | |
| ISApr9 | IS1380 | Alpha proteobacterium | 28 | 4.4 | |
| ISThsp19 | IS21 | Thiomonas sp. | 28 | 4.4 | |
| ISMasp6 | IS5 | IS427 | Magnetococcus sp. | 28 | 4.4 |
| ISMca7 | IS5 | IS5 | Methylococcus capsulatus | 28 | 4.4 |
| ISMba12 | IS1634 | Methanosarcina barkeri | 28 | 4.4 | |
| IS1247 | IS1380 | - | Xanthobacter autotrophicus | 28 | 4.4 |
| IS116 | IS110 | - | Streptomyces clavuligerus | 28 | 4.4 |
>ISRaq1
Length = 1221
Score = 34.2 bits (17), Expect = 0.072
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 20 ttcgcccggatgcgccg 36
|||||||||||||||||
Sbjct: 663 ttcgcccggatgcgccg 679
>ISSpu22
Length = 1373
Score = 30.2 bits (15), Expect = 1.1
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 75 cggcgccggagcggtgttg 93
||||||| |||||||||||
Sbjct: 930 cggcgccagagcggtgttg 948
>ISKpn23
Length = 1671
Score = 28.2 bits (14), Expect = 4.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 19 gttcgcccggatgc 32
||||||||||||||
Sbjct: 1040 gttcgcccggatgc 1027
>ISBj11
Length = 2649
Score = 28.2 bits (14), Expect = 4.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 213 ggttgaggagcgcc 226
||||||||||||||
Sbjct: 1394 ggttgaggagcgcc 1381
>ISHvo10
Length = 1462
Score = 28.2 bits (14), Expect = 4.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 206 ttgacgtggttgag 219
||||||||||||||
Sbjct: 763 ttgacgtggttgag 776
>ISPsy30
Length = 5167
Score = 28.2 bits (14), Expect = 4.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 175 tacgtcgccggggc 188
||||||||||||||
Sbjct: 1705 tacgtcgccggggc 1692
>ISTel4
Length = 842
Score = 28.2 bits (14), Expect = 4.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 125 ttgccgcctttggc 138
||||||||||||||
Sbjct: 412 ttgccgcctttggc 399
>ISPfr17
Length = 1092
Score = 28.2 bits (14), Expect = 4.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 136 ggcggcggaacggt 149
||||||||||||||
Sbjct: 182 ggcggcggaacggt 195
>ISApr9
Length = 1668
Score = 28.2 bits (14), Expect = 4.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 19 gttcgcccggatgc 32
||||||||||||||
Sbjct: 1037 gttcgcccggatgc 1024
>ISThsp19
Length = 2657
Score = 28.2 bits (14), Expect = 4.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 67 atccagaccggcgc 80
||||||||||||||
Sbjct: 1422 atccagaccggcgc 1409
>ISMasp6
Length = 834
Score = 28.2 bits (14), Expect = 4.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 125 ttgccgcctttggc 138
||||||||||||||
Sbjct: 404 ttgccgcctttggc 391
>ISMca7
Length = 1172
Score = 28.2 bits (14), Expect = 4.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 22 cgcccggatgcgcc 35
||||||||||||||
Sbjct: 1063 cgcccggatgcgcc 1050
>ISMba12
Length = 1729
Score = 28.2 bits (14), Expect = 4.4
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 95 atgcattaaaagtagcag 112
|||||||||||| |||||
Sbjct: 1059 atgcattaaaagcagcag 1076
>IS1247
Length = 1672
Score = 28.2 bits (14), Expect = 4.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 19 gttcgcccggatgc 32
||||||||||||||
Sbjct: 1041 gttcgcccggatgc 1028
>IS116
Length = 1421
Score = 28.2 bits (14), Expect = 4.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 23 gcccggatgcgccg 36
||||||||||||||
Sbjct: 546 gcccggatgcgccg 559
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_422_length_228_cov_0.966887_ID_6012
(228 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISDge10 | IS200/IS605 | Deinococcus geothermalis | 34 | 0.072 | |
| ISKpn25 | ISL3 | Klebsiella pneumoniae | 32 | 0.28 | |
| ISPpu17 | IS30 | Pseudomonas putida | 32 | 0.28 | |
| ISAba30 | IS200/IS605 | Acinetobacter baumannii | 30 | 1.1 | |
| ISMex23 | IS200/IS605 | IS1341 | Methylobacterium extorquens | 30 | 1.1 |
| ISAli10 | IS66 | Azospirillum lipoferum | 30 | 1.1 | |
| ISPpu2 | IS630 | - | Pseudomonas putida | 30 | 1.1 |
| ISPfl2 | IS30 | - | Pseudomonas fluorescens | 30 | 1.1 |
| ISAs33 | IS3 | IS3 | Aeromonas salmonicida | 28 | 4.4 |
| ISAve4 | IS3 | IS3 | Aeromonas veronii | 28 | 4.4 |
| TnAs3 | Tn3 | Aeromonas salmonicida | 28 | 4.4 | |
| ISAs6 | IS3 | IS3 | Aeromonas salmonicida | 28 | 4.4 |
| ISStvi1 | ISAzo13 | Streptomyces violaceusniger | 28 | 4.4 | |
| ISAra1 | IS5 | IS903 | Agrobacterium radiobacter | 28 | 4.4 |
| ISHla5 | ISH3 | Halorubrum lacusprofundi | 28 | 4.4 | |
| ISVsp16 | IS1182 | Verrucomicrobium spinosum | 28 | 4.4 | |
| ISHla1 | ISH3 | Halorubrum lacusprofundi | 28 | 4.4 | |
| ISVsa10 | IS91 | Aliivibrio salmonicida | 28 | 4.4 | |
| ISDpr3 | IS3 | IS3 | delta proteobacterium | 28 | 4.4 |
| ISAzvi7 | IS4 | IS50 | Azotobacter vinelandii | 28 | 4.4 |
| ISEch4 | IS110 | IS1111 | Erwinia chrysanthemi | 28 | 4.4 |
| ISAav1 | IS21 | - | Acidovorax avenae | 28 | 4.4 |
| IS4 | IS4 | IS4 | Escherichia coli | 28 | 4.4 |
| ISSme3 | IS66 | Sinorhizobium medicae | 28 | 4.4 |
>ISDge10
Length = 1757
Score = 34.2 bits (17), Expect = 0.072
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 166 gcgggaagtcggcgctt 182
|||||||||||||||||
Sbjct: 620 gcgggaagtcggcgctt 636
>ISKpn25
Length = 8154
Score = 32.2 bits (16), Expect = 0.28
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 183 gcgcgggcgttatccg 198
||||||||||||||||
Sbjct: 474 gcgcgggcgttatccg 459
>ISPpu17
Length = 1066
Score = 32.2 bits (16), Expect = 0.28
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 177 gcgcttgcgcgggcgt 192
||||||||||||||||
Sbjct: 999 gcgcttgcgcgggcgt 984
>ISAba30
Length = 1770
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 166 gcgggaagtcggcgc 180
|||||||||||||||
Sbjct: 810 gcgggaagtcggcgc 796
>ISMex23
Length = 1390
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 177 gcgcttgcgcgggcg 191
|||||||||||||||
Sbjct: 421 gcgcttgcgcgggcg 407
>ISAli10
Length = 2584
Score = 30.2 bits (15), Expect = 1.1
Identities = 18/19 (94%)
Strand = Plus / Plus
Query: 196 ccggcgagctgcccctgct 214
|||||||||||||| ||||
Sbjct: 1313 ccggcgagctgcccgtgct 1331
>ISPpu2
Length = 1131
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 187 gggcgttatccggcg 201
|||||||||||||||
Sbjct: 543 gggcgttatccggcg 529
>ISPfl2
Length = 1081
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 177 gcgcttgcgcgggcg 191
|||||||||||||||
Sbjct: 962 gcgcttgcgcgggcg 948
>ISAs33
Length = 1239
Score = 28.2 bits (14), Expect = 4.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 108 attgaacacctcag 121
||||||||||||||
Sbjct: 70 attgaacacctcag 57
>ISAve4
Length = 1239
Score = 28.2 bits (14), Expect = 4.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 108 attgaacacctcag 121
||||||||||||||
Sbjct: 70 attgaacacctcag 57
>TnAs3
Length = 18735
Score = 28.2 bits (14), Expect = 4.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 39 cgggtgggtgcggc 52
||||||||||||||
Sbjct: 6714 cgggtgggtgcggc 6701
Score = 28.2 bits (14), Expect = 4.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 175 cggcgcttgcgcgg 188
||||||||||||||
Sbjct: 12429 cggcgcttgcgcgg 12442
>ISAs6
Length = 1239
Score = 28.2 bits (14), Expect = 4.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 108 attgaacacctcag 121
||||||||||||||
Sbjct: 70 attgaacacctcag 57
>ISStvi1
Length = 1738
Score = 28.2 bits (14), Expect = 4.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 123 gtgcgggctggcga 136
||||||||||||||
Sbjct: 1668 gtgcgggctggcga 1655
>ISAra1
Length = 1116
Score = 28.2 bits (14), Expect = 4.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 129 gctggcgaaagctg 142
||||||||||||||
Sbjct: 549 gctggcgaaagctg 562
>ISHla5
Length = 1397
Score = 28.2 bits (14), Expect = 4.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 173 gtcggcgcttgcgc 186
||||||||||||||
Sbjct: 189 gtcggcgcttgcgc 202
>ISVsp16
Length = 1578
Score = 28.2 bits (14), Expect = 4.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 141 tgggctttcgtcgg 154
||||||||||||||
Sbjct: 1325 tgggctttcgtcgg 1338
>ISHla1
Length = 1399
Score = 28.2 bits (14), Expect = 4.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 173 gtcggcgcttgcgc 186
||||||||||||||
Sbjct: 189 gtcggcgcttgcgc 202
>ISVsa10
Length = 1545
Score = 28.2 bits (14), Expect = 4.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 86 tagcgataccaaaa 99
||||||||||||||
Sbjct: 983 tagcgataccaaaa 996
>ISDpr3
Length = 1224
Score = 28.2 bits (14), Expect = 4.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 76 cgtttcgtcttagc 89
||||||||||||||
Sbjct: 642 cgtttcgtcttagc 629
>ISAzvi7
Length = 1450
Score = 28.2 bits (14), Expect = 4.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 197 cggcgagctgcccc 210
||||||||||||||
Sbjct: 784 cggcgagctgcccc 771
>ISEch4
Length = 1354
Score = 28.2 bits (14), Expect = 4.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 124 tgcgggctggcgaa 137
||||||||||||||
Sbjct: 1005 tgcgggctggcgaa 1018
>ISAav1
Length = 2532
Score = 28.2 bits (14), Expect = 4.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 118 tcagcgtgcgggct 131
||||||||||||||
Sbjct: 1150 tcagcgtgcgggct 1163
>IS4
Length = 1426
Score = 28.2 bits (14), Expect = 4.4
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 168 gggaagtcggcgcttgcg 185
|||||| |||||||||||
Sbjct: 234 gggaagacggcgcttgcg 217
>ISSme3
Length = 3149
Score = 28.2 bits (14), Expect = 4.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 201 gagctgcccctgct 214
||||||||||||||
Sbjct: 1286 gagctgcccctgct 1299
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_423_length_228_cov_0.966887_ID_6014
(228 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISOba2 | IS3 | IS407 | Oceanicola batsensis | 34 | 0.072 |
| ISPfe1 | IS3 | IS407 | Paracoccus ferrooxidans | 32 | 0.28 |
| ISCARN42 | IS701 | Metagenomic data from CARNOULES | 32 | 0.28 | |
| ISIlo12 | IS3 | IS3 | Idiomarina loihiensis | 32 | 0.28 |
| ISMno5 | ISL3 | Methylobacterium nodulans | 30 | 1.1 | |
| ISAzo39 | IS5 | IS5 | Azoarcus sp. | 30 | 1.1 |
| ISRhsp5 | IS66 | Rhodobacter sphaeroides | 30 | 1.1 | |
| ISTth7 | IS5 | Thermus thermophilus | 30 | 1.1 | |
| ISPsy16 | IS110 | IS1111 | Pseudomonas syringae | 30 | 1.1 |
| ISRso10 | IS3 | IS2 | Ralstonia solanacearum | 30 | 1.1 |
| IS4811 | IS5 | IS1031 | Streptomyces lividans | 30 | 1.1 |
| ISMyma11 | ISNCY | ISDol1 | Mycobacterium marinum | 28 | 4.4 |
| ISPko2 | IS256 | Paracoccus kondratievae | 28 | 4.4 | |
| ISPaes3 | IS256 | Paracoccus aestuarii | 28 | 4.4 | |
| ISMno22 | IS110 | IS1111 | Methylobacterium nodulans | 28 | 4.4 |
| ISFsp13 | ISAzo13 | Frankia sp. | 28 | 4.4 | |
| ISMno38 | IS1182 | Methylobacterium nodulans | 28 | 4.4 | |
| ISMno17 | IS1182 | Methylobacterium nodulans | 28 | 4.4 | |
| ISMch4 | IS110 | IS1111 | Methylobacterium chloromethanicum | 28 | 4.4 |
| ISMgi1 | IS1380 | Mycobacterium gilvum | 28 | 4.4 | |
| ISApr9 | IS1380 | Alpha proteobacterium | 28 | 4.4 | |
| ISCARN108 | IS66 | Metagenomic data from CARNOULES | 28 | 4.4 | |
| ISAli5 | IS3 | IS150 | Azospirillum lipoferum | 28 | 4.4 |
| ISNha5 | IS1595 | ISNha5 | Nitrobacter hamburgensis | 28 | 4.4 |
| ISMmg5 | IS1595 | ISSod11 | Magnetospirillum magnetotacticum | 28 | 4.4 |
| ISBxe3 | IS481 | Burkholderia xenovorans | 28 | 4.4 | |
| ISMysp4 | IS481 | Mycobacterium sp. | 28 | 4.4 | |
| ISMmg4 | IS701 | Magnetospirillum magneticum | 28 | 4.4 | |
| ISFsp3 | IS21 | Frankia sp. | 28 | 4.4 | |
| ISBmu3 | IS21 | Burkholderia multivorans | 28 | 4.4 | |
| ISLxx1 | IS21 | Leifsonia xyli | 28 | 4.4 | |
| IS931 | IS256 | - | Burkholderia cepacia | 28 | 4.4 |
| IS408 | IS21 | - | Burkholderia cepacia | 28 | 4.4 |
| IS1629 | ISAs1 | - | Streptomyces sp. | 28 | 4.4 |
| IS1480b | IS5 | IS1031 | Xanthomonas campestris | 28 | 4.4 |
| IS1480a | IS5 | IS1031 | Xanthomonas campestris | 28 | 4.4 |
| IS1246 | IS5 | IS5 | Pseudomonas putida | 28 | 4.4 |
>ISOba2
Length = 1253
Score = 34.2 bits (17), Expect = 0.072
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 155 ctcgtcgcgcaggctgc 171
|||||||||||||||||
Sbjct: 1005 ctcgtcgcgcaggctgc 989
>ISPfe1
Length = 1248
Score = 32.2 bits (16), Expect = 0.28
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 156 tcgtcgcgcaggctgc 171
||||||||||||||||
Sbjct: 1005 tcgtcgcgcaggctgc 990
>ISCARN42
Length = 1473
Score = 32.2 bits (16), Expect = 0.28
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 40 cgaggcgggcgagcag 55
||||||||||||||||
Sbjct: 1417 cgaggcgggcgagcag 1402
>ISIlo12
Length = 1223
Score = 32.2 bits (16), Expect = 0.28
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 145 cgctttcggcctcgtc 160
||||||||||||||||
Sbjct: 663 cgctttcggcctcgtc 648
>ISMno5
Length = 1728
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 106 cggcggcgaggccgg 120
|||||||||||||||
Sbjct: 406 cggcggcgaggccgg 420
>ISAzo39
Length = 1277
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 86 ttcatcgcccgcggt 100
|||||||||||||||
Sbjct: 490 ttcatcgcccgcggt 504
>ISRhsp5
Length = 2528
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 28 ggtggtgttgcgcga 42
|||||||||||||||
Sbjct: 1743 ggtggtgttgcgcga 1757
>ISTth7
Length = 1029
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 115 ggccggtgatccggc 129
|||||||||||||||
Sbjct: 753 ggccggtgatccggc 767
>ISPsy16
Length = 1461
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 214 tggcggcaatcgcca 228
|||||||||||||||
Sbjct: 1064 tggcggcaatcgcca 1050
>ISRso10
Length = 1335
Score = 30.2 bits (15), Expect = 1.1
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 82 ccacttcatcgcccgcggt 100
||||||| |||||||||||
Sbjct: 295 ccacttcctcgcccgcggt 277
>IS4811
Length = 5396
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 153 gcctcgtcgcgcagg 167
|||||||||||||||
Sbjct: 1713 gcctcgtcgcgcagg 1699
>ISMyma11
Length = 1584
Score = 28.2 bits (14), Expect = 4.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 116 gccggtgatccggc 129
||||||||||||||
Sbjct: 766 gccggtgatccggc 753
>ISPko2
Length = 1396
Score = 28.2 bits (14), Expect = 4.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 100 ttgatgcggcggcg 113
||||||||||||||
Sbjct: 1182 ttgatgcggcggcg 1169
>ISPaes3
Length = 1393
Score = 28.2 bits (14), Expect = 4.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 100 ttgatgcggcggcg 113
||||||||||||||
Sbjct: 1179 ttgatgcggcggcg 1166
>ISMno22
Length = 1426
Score = 28.2 bits (14), Expect = 4.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 36 tgcgcgaggcgggc 49
||||||||||||||
Sbjct: 299 tgcgcgaggcgggc 312
>ISFsp13
Length = 1724
Score = 28.2 bits (14), Expect = 4.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 47 ggcgagcagggtgg 60
||||||||||||||
Sbjct: 1395 ggcgagcagggtgg 1382
>ISMno38
Length = 1466
Score = 28.2 bits (14), Expect = 4.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 96 gcggttgatgcggc 109
||||||||||||||
Sbjct: 915 gcggttgatgcggc 928
>ISMno17
Length = 1534
Score = 28.2 bits (14), Expect = 4.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 166 ggctgcggatgcgc 179
||||||||||||||
Sbjct: 1112 ggctgcggatgcgc 1125
>ISMch4
Length = 1631
Score = 28.2 bits (14), Expect = 4.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 119 ggtgatccggccgc 132
||||||||||||||
Sbjct: 239 ggtgatccggccgc 252
>ISMgi1
Length = 1614
Score = 28.2 bits (14), Expect = 4.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 3 cggctggccatgga 16
||||||||||||||
Sbjct: 1419 cggctggccatgga 1432
>ISApr9
Length = 1668
Score = 28.2 bits (14), Expect = 4.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 158 gtcgcgcaggctgc 171
||||||||||||||
Sbjct: 1577 gtcgcgcaggctgc 1564
>ISCARN108
Length = 2423
Score = 28.2 bits (14), Expect = 4.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 65 gctgcgtgacaggt 78
||||||||||||||
Sbjct: 1496 gctgcgtgacaggt 1483
>ISAli5
Length = 1266
Score = 28.2 bits (14), Expect = 4.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 56 ggtggagaagctgc 69
||||||||||||||
Sbjct: 276 ggtggagaagctgc 289
>ISNha5
Length = 3904
Score = 28.2 bits (14), Expect = 4.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 101 tgatgcggcggcga 114
||||||||||||||
Sbjct: 1869 tgatgcggcggcga 1856
>ISMmg5
Length = 1101
Score = 28.2 bits (14), Expect = 4.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 215 ggcggcaatcgcca 228
||||||||||||||
Sbjct: 680 ggcggcaatcgcca 667
>ISBxe3
Length = 1279
Score = 28.2 bits (14), Expect = 4.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 168 ctgcggatgcgcca 181
||||||||||||||
Sbjct: 809 ctgcggatgcgcca 796
>ISMysp4
Length = 1090
Score = 28.2 bits (14), Expect = 4.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 133 gggcgtcgatcgcg 146
||||||||||||||
Sbjct: 688 gggcgtcgatcgcg 675
>ISMmg4
Length = 1507
Score = 28.2 bits (14), Expect = 4.4
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 47 ggcgagcagggtggagaa 64
|||| |||||||||||||
Sbjct: 1102 ggcgggcagggtggagaa 1085
>ISFsp3
Length = 2209
Score = 28.2 bits (14), Expect = 4.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 118 cggtgatccggccg 131
||||||||||||||
Sbjct: 356 cggtgatccggccg 369
>ISBmu3
Length = 2697
Score = 28.2 bits (14), Expect = 4.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 28 ggtggtgttgcgcg 41
||||||||||||||
Sbjct: 2643 ggtggtgttgcgcg 2630
>ISLxx1
Length = 2205
Score = 28.2 bits (14), Expect = 4.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 38 cgcgaggcgggcga 51
||||||||||||||
Sbjct: 1806 cgcgaggcgggcga 1793
>IS931
Length = 1477
Score = 28.2 bits (14), Expect = 4.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 104 tgcggcggcgaggc 117
||||||||||||||
Sbjct: 445 tgcggcggcgaggc 458
>IS408
Length = 2798
Score = 28.2 bits (14), Expect = 4.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 28 ggtggtgttgcgcg 41
||||||||||||||
Sbjct: 2631 ggtggtgttgcgcg 2618
Score = 28.2 bits (14), Expect = 4.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 28 ggtggtgttgcgcg 41
||||||||||||||
Sbjct: 2744 ggtggtgttgcgcg 2731
>IS1629
Length = 1462
Score = 28.2 bits (14), Expect = 4.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 127 ggccgcgggcgtcg 140
||||||||||||||
Sbjct: 1010 ggccgcgggcgtcg 997
>IS1480b
Length = 848
Score = 28.2 bits (14), Expect = 4.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 169 tgcggatgcgccaa 182
||||||||||||||
Sbjct: 38 tgcggatgcgccaa 51
>IS1480a
Length = 848
Score = 28.2 bits (14), Expect = 4.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 169 tgcggatgcgccaa 182
||||||||||||||
Sbjct: 38 tgcggatgcgccaa 51
>IS1246
Length = 1275
Score = 28.2 bits (14), Expect = 4.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 86 ttcatcgcccgcgg 99
||||||||||||||
Sbjct: 489 ttcatcgcccgcgg 502
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_424_length_228_cov_0.960265_ID_6016
(228 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISPko7 | IS110 | IS1111 | Paracoccus kondratievae | 32 | 0.28 |
| ISRel24 | IS66 | Rhizobium etli | 32 | 0.28 | |
| ISRle11 | IS1182 | Rhizobium leguminosarum | 32 | 0.28 | |
| ISFsp15 | IS1380 | Frankia sp. | 32 | 0.28 | |
| ISCARN40 | IS256 | Metagenomic data from CARNOULES | 32 | 0.28 | |
| ISCap1 | ISAzo13 | Candidatus Accumulibacter phosphatis | 30 | 1.1 | |
| ISMno31 | IS3 | IS150 | Methylobacterium nodulans | 30 | 1.1 |
| ISCARN42 | IS701 | Metagenomic data from CARNOULES | 30 | 1.1 | |
| ISFsp1 | ISL3 | Frankia sp. | 30 | 1.1 | |
| ISXax1 | IS256 | Xanthomonas axonopodis | 30 | 1.1 | |
| TnXo19 | Tn3 | Xanthomonas oryzae | 28 | 4.4 | |
| TnAs3 | Tn3 | Aeromonas salmonicida | 28 | 4.4 | |
| ISBj11 | IS21 | Bradyrhizobium japonicum | 28 | 4.4 | |
| ISPa38 | Tn3 | Pseudomonas aeruginosa | 28 | 4.4 | |
| ISAzs17 | Tn3 | Azospirillum sp. | 28 | 4.4 | |
| ISBvi6 | IS5 | IS903 | Burkholderia vietnamiensis | 28 | 4.4 |
| ISRhba5 | IS5 | IS903 | Rhodobacterales bacterium | 28 | 4.4 |
| ISAmde1 | IS1182 | Ammonifex degensii | 28 | 4.4 | |
| ISPso1 | IS256 | Paracoccus solventivorans | 28 | 4.4 | |
| ISShes11 | Tn3 | Shewanella sp. | 28 | 4.4 | |
| ISPpa7 | IS66 | Paracoccus pantotrophus | 28 | 4.4 | |
| ISGpr5 | IS5 | IS5 | Gamma proteobacterium | 28 | 4.4 |
| ISNha6 | IS5 | IS5 | Nitrobacter hamburgensis | 28 | 4.4 |
| ISAmu1 | IS1595 | ISNwi1 | Akkermansia muciniphila | 28 | 4.4 |
| ISMno38 | IS1182 | Methylobacterium nodulans | 28 | 4.4 | |
| ISPfr15 | IS481 | Propionibacterium freudenreichii | 28 | 4.4 | |
| ISThsp13 | IS1380 | Thiomonas sp. | 28 | 4.4 | |
| ISAzo17 | IS21 | Azoarcus sp. | 28 | 4.4 | |
| ISAzo12 | IS21 | Azoarcus sp. | 28 | 4.4 | |
| ISApr6 | IS66 | Alpha proteobacterium | 28 | 4.4 | |
| ISBlma9 | IS66 | Blastopirellula marina | 28 | 4.4 | |
| ISHne2 | IS481 | Hyphomonas neptunium | 28 | 4.4 | |
| ISBrsp4 | IS481 | Bradyrhizobium sp. | 28 | 4.4 | |
| ISRpa3 | IS481 | Rhodopseudomonas palustris | 28 | 4.4 | |
| ISBvi4 | IS3 | IS3 | Burkholderia vietnamiensis | 28 | 4.4 |
| ISMt2 | IS21 | - | Mycobacterium tuberculosis | 28 | 4.4 |
| ISLtaq1 | IS3 | IS150 | Thermus aquaticus | 28 | 4.4 |
| ISBp1 | IS3 | IS407 | Burkholderia pseudomallei | 28 | 4.4 |
| IS406 | IS256 | - | Burkholderia cepacia | 28 | 4.4 |
| IS285 | IS256 | - | Yersinia pestis | 28 | 4.4 |
| IS1373 | IS5 | ISL2 | Streptomyces lividans | 28 | 4.4 |
>ISPko7
Length = 1140
Score = 32.2 bits (16), Expect = 0.28
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 45 gctgcggcccggccgg 60
||||||||||||||||
Sbjct: 927 gctgcggcccggccgg 942
>ISRel24
Length = 2837
Score = 32.2 bits (16), Expect = 0.28
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 154 gagctgcgccgacgat 169
||||||||||||||||
Sbjct: 748 gagctgcgccgacgat 733
>ISRle11
Length = 1527
Score = 32.2 bits (16), Expect = 0.28
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 189 ctgaccccttggggca 204
||||||||||||||||
Sbjct: 1215 ctgaccccttggggca 1230
>ISFsp15
Length = 1695
Score = 32.2 bits (16), Expect = 0.28
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 19 cgagcgcgacgatctg 34
||||||||||||||||
Sbjct: 1289 cgagcgcgacgatctg 1274
>ISCARN40
Length = 1264
Score = 32.2 bits (16), Expect = 0.28
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 133 actcgccgaactcgcc 148
||||||||||||||||
Sbjct: 320 actcgccgaactcgcc 305
>ISCap1
Length = 1311
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 15 ccatcgagcgcgacg 29
|||||||||||||||
Sbjct: 1211 ccatcgagcgcgacg 1225
>ISMno31
Length = 1510
Score = 30.2 bits (15), Expect = 1.1
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 19 cgagcgcgacgatctgctc 37
|||| ||||||||||||||
Sbjct: 684 cgagggcgacgatctgctc 666
>ISCARN42
Length = 1473
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 16 catcgagcgcgacga 30
|||||||||||||||
Sbjct: 1118 catcgagcgcgacga 1132
>ISFsp1
Length = 1732
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 164 gacgatttcgcggtg 178
|||||||||||||||
Sbjct: 559 gacgatttcgcggtg 573
>ISXax1
Length = 1329
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 134 ctcgccgaactcgcc 148
|||||||||||||||
Sbjct: 315 ctcgccgaactcgcc 301
>TnXo19
Length = 18767
Score = 28.2 bits (14), Expect = 4.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 23 cgcgacgatctgct 36
||||||||||||||
Sbjct: 10302 cgcgacgatctgct 10289
Score = 28.2 bits (14), Expect = 4.4
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 105 ccttgtccggtaccgatc 122
||||||||||| ||||||
Sbjct: 12582 ccttgtccggtgccgatc 12599
>TnAs3
Length = 18735
Score = 28.2 bits (14), Expect = 4.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 25 cgacgatctgctca 38
||||||||||||||
Sbjct: 16314 cgacgatctgctca 16327
>ISBj11
Length = 2649
Score = 28.2 bits (14), Expect = 4.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 21 agcgcgacgatctg 34
||||||||||||||
Sbjct: 2646 agcgcgacgatctg 2633
>ISPa38
Length = 6455
Score = 28.2 bits (14), Expect = 4.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 25 cgacgatctgctca 38
||||||||||||||
Sbjct: 4034 cgacgatctgctca 4047
>ISAzs17
Length = 7252
Score = 28.2 bits (14), Expect = 4.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 171 tcgcggtggccgtg 184
||||||||||||||
Sbjct: 5070 tcgcggtggccgtg 5057
>ISBvi6
Length = 1047
Score = 28.2 bits (14), Expect = 4.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 85 tcgtgcggtagcgc 98
||||||||||||||
Sbjct: 85 tcgtgcggtagcgc 72
>ISRhba5
Length = 1053
Score = 28.2 bits (14), Expect = 4.4
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 85 tcgtgcggtagcgcgcgg 102
||||||||||||| ||||
Sbjct: 100 tcgtgcggtagcgggcgg 83
>ISAmde1
Length = 1827
Score = 28.2 bits (14), Expect = 4.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 104 gccttgtccggtac 117
||||||||||||||
Sbjct: 1340 gccttgtccggtac 1327
>ISPso1
Length = 1400
Score = 28.2 bits (14), Expect = 4.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 171 tcgcggtggccgtg 184
||||||||||||||
Sbjct: 685 tcgcggtggccgtg 698
>ISShes11
Length = 7669
Score = 28.2 bits (14), Expect = 4.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 25 cgacgatctgctca 38
||||||||||||||
Sbjct: 5248 cgacgatctgctca 5261
>ISPpa7
Length = 2731
Score = 28.2 bits (14), Expect = 4.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 6 ccgtcgccaccatc 19
||||||||||||||
Sbjct: 111 ccgtcgccaccatc 98
>ISGpr5
Length = 1558
Score = 28.2 bits (14), Expect = 4.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 191 gaccccttggggca 204
||||||||||||||
Sbjct: 1457 gaccccttggggca 1444
>ISNha6
Length = 1547
Score = 28.2 bits (14), Expect = 4.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 20 gagcgcgacgatct 33
||||||||||||||
Sbjct: 544 gagcgcgacgatct 531
>ISAmu1
Length = 2422
Score = 28.2 bits (14), Expect = 4.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 183 tggcggctgacccc 196
||||||||||||||
Sbjct: 263 tggcggctgacccc 276
>ISMno38
Length = 1466
Score = 28.2 bits (14), Expect = 4.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 202 gcacttcgtgcgcg 215
||||||||||||||
Sbjct: 146 gcacttcgtgcgcg 159
>ISPfr15
Length = 1097
Score = 28.2 bits (14), Expect = 4.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 169 tttcgcggtggccg 182
||||||||||||||
Sbjct: 223 tttcgcggtggccg 210
>ISThsp13
Length = 1583
Score = 28.2 bits (14), Expect = 4.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 16 catcgagcgcgacg 29
||||||||||||||
Sbjct: 1544 catcgagcgcgacg 1531
>ISAzo17
Length = 2095
Score = 28.2 bits (14), Expect = 4.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 176 gtggccgtggcggc 189
||||||||||||||
Sbjct: 876 gtggccgtggcggc 863
>ISAzo12
Length = 3075
Score = 28.2 bits (14), Expect = 4.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 86 cgtgcggtagcgcg 99
||||||||||||||
Sbjct: 1679 cgtgcggtagcgcg 1666
>ISApr6
Length = 2479
Score = 28.2 bits (14), Expect = 4.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 155 agctgcgccgacga 168
||||||||||||||
Sbjct: 767 agctgcgccgacga 754
>ISBlma9
Length = 2606
Score = 28.2 bits (14), Expect = 4.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 16 catcgagcgcgacg 29
||||||||||||||
Sbjct: 2035 catcgagcgcgacg 2048
>ISHne2
Length = 1316
Score = 28.2 bits (14), Expect = 4.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 102 gcgccttgtccggt 115
||||||||||||||
Sbjct: 911 gcgccttgtccggt 924
>ISBrsp4
Length = 1268
Score = 28.2 bits (14), Expect = 4.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 23 cgcgacgatctgct 36
||||||||||||||
Sbjct: 323 cgcgacgatctgct 310
>ISRpa3
Length = 1261
Score = 28.2 bits (14), Expect = 4.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 8 gtcgccaccatcga 21
||||||||||||||
Sbjct: 1181 gtcgccaccatcga 1194
>ISBvi4
Length = 1268
Score = 28.2 bits (14), Expect = 4.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 161 gccgacgatttcgc 174
||||||||||||||
Sbjct: 836 gccgacgatttcgc 823
>ISMt2
Length = 2645
Score = 28.2 bits (14), Expect = 4.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 179 gccgtggcggctga 192
||||||||||||||
Sbjct: 1235 gccgtggcggctga 1248
>ISLtaq1
Length = 1187
Score = 28.2 bits (14), Expect = 4.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 142 actcgccgcgttga 155
||||||||||||||
Sbjct: 360 actcgccgcgttga 347
>ISBp1
Length = 1214
Score = 28.2 bits (14), Expect = 4.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 100 cggcgccttgtccg 113
||||||||||||||
Sbjct: 125 cggcgccttgtccg 112
>IS406
Length = 1367
Score = 28.2 bits (14), Expect = 4.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 154 gagctgcgccgacg 167
||||||||||||||
Sbjct: 1179 gagctgcgccgacg 1192
>IS285
Length = 1318
Score = 28.2 bits (14), Expect = 4.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 163 cgacgatttcgcgg 176
||||||||||||||
Sbjct: 435 cgacgatttcgcgg 422
>IS1373
Length = 817
Score = 28.2 bits (14), Expect = 4.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 178 ggccgtggcggctg 191
||||||||||||||
Sbjct: 170 ggccgtggcggctg 183
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_425_length_228_cov_0.754967_ID_6018
(228 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISFsp8 | IS3 | IS3 | Frankia sp. | 36 | 0.018 |
| ISBlo9 | IS3 | IS150 | Bifidobacterium longum | 34 | 0.072 |
| ISMyma8 | IS3 | IS407 | Mycobacterium marinum | 32 | 0.28 |
| ISOan3 | IS256 | Octadecabacter antarcticus | 32 | 0.28 | |
| ISMno24 | IS91 | Methylobacterium nodulans | 30 | 1.1 | |
| ISSal1 | IS66 | Shewanella algae | 30 | 1.1 | |
| ISAnsp12 | IS66 | Anaeromyxobacter sp. | 30 | 1.1 | |
| IS882 | Tn3 | Ralstonia eutropha | 30 | 1.1 | |
| ISMmg1 | IS110 | IS1111 | Magnetospirillum magnetotacticum | 30 | 1.1 |
| TnAs3 | Tn3 | Aeromonas salmonicida | 28 | 4.4 | |
| ISSoc1 | IS200/IS605 | IS1341 | Synechococcus sp. | 28 | 4.4 |
| ISBj2 | IS5 | IS427 | Bradyrhizobium japonicum | 28 | 4.4 |
| ISStu2 | ISAzo13 | Streptomyces turgidiscabies | 28 | 4.4 | |
| ISSysp6 | ISKra4 | ISAzba1 | Synechococcus sp. | 28 | 4.4 |
| ISStma17 | IS3 | IS51 | Stenotrophomonas maltophilia | 28 | 4.4 |
| ISAcfe1 | IS1182 | Acidimicrobium ferrooxidans | 28 | 4.4 | |
| ISMtsp9 | IS110 | Methylobacterium sp. | 28 | 4.4 | |
| ISShes11 | Tn3 | Shewanella sp. | 28 | 4.4 | |
| ISMpo10 | Tn3 | Methylobacterium populi | 28 | 4.4 | |
| ISMno23 | IS91 | Methylobacterium nodulans | 28 | 4.4 | |
| ISArsp6 | Tn3 | Arthrobacter sp. | 28 | 4.4 | |
| ISArsp4 | IS256 | Arthrobacter sp. | 28 | 4.4 | |
| ISMch8 | IS5 | IS5 | Methylobacterium chloromethanicum | 28 | 4.4 |
| ISAnsp11 | IS3 | IS3 | Anaeromyxobacter sp. | 28 | 4.4 |
| ISMex23 | IS200/IS605 | IS1341 | Methylobacterium extorquens | 28 | 4.4 |
| ISMsi5 | IS3 | IS3 | Methylocella silvestris | 28 | 4.4 |
| ISTha2 | ISAs1 | Thauera sp. | 28 | 4.4 | |
| ISThsp9 | Tn3 | Thiomonas sp. | 28 | 4.4 | |
| ISApr7 | IS1595 | ISNwi1 | Alpha proteobacterium | 28 | 4.4 |
| ISAfe7 | IS3 | IS51 | Acidithiobacillus ferrooxidans | 28 | 4.4 |
| ISAnsp1 | IS1182 | Anaeromyxobacter sp. | 28 | 4.4 | |
| ISThsp1 | IS1182 | Thiomonas sp. | 28 | 4.4 | |
| ISSba6 | IS4 | IS4 | Shewanella baltica | 28 | 4.4 |
| ISJsp1 | IS3 | IS51 | Janthinobacterium sp. | 28 | 4.4 |
| ISSusp1 | IS3 | IS51 | Sulfitobacter sp. | 28 | 4.4 |
| ISSod7 | IS4 | IS4 | Shewanella oneidensis | 28 | 4.4 |
| ISAzo4 | IS21 | Azoarcus sp. | 28 | 4.4 | |
| ISDra6 | IS630 | Deinococcus radiodurans | 28 | 4.4 | |
| ISBlo1 | IS21 | Bifidobacterium longum | 28 | 4.4 | |
| ISRso17 | IS701 | - | Ralstonia solanacearum | 28 | 4.4 |
>ISFsp8
Length = 1297
Score = 36.2 bits (18), Expect = 0.018
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 8 ggcggcgatgcgccgggcgccg 29
||||||||| ||||||||||||
Sbjct: 569 ggcggcgatccgccgggcgccg 548
>ISBlo9
Length = 1226
Score = 34.2 bits (17), Expect = 0.072
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 194 gagcagcccgtcgatct 210
|||||||||||||||||
Sbjct: 955 gagcagcccgtcgatct 939
Score = 28.2 bits (14), Expect = 4.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 70 gcgtgtcggcggca 83
||||||||||||||
Sbjct: 745 gcgtgtcggcggca 758
>ISMyma8
Length = 1247
Score = 32.2 bits (16), Expect = 0.28
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 181 tgccgctgacgatgagcagc 200
|||||||||||| |||||||
Sbjct: 489 tgccgctgacgacgagcagc 508
>ISOan3
Length = 1437
Score = 32.2 bits (16), Expect = 0.28
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 196 gcagcccgtcgatctg 211
||||||||||||||||
Sbjct: 666 gcagcccgtcgatctg 651
>ISMno24
Length = 2157
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 68 gagcgtgtcggcggc 82
|||||||||||||||
Sbjct: 855 gagcgtgtcggcggc 869
>ISSal1
Length = 2528
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 28 cgaggcggtactggc 42
|||||||||||||||
Sbjct: 1545 cgaggcggtactggc 1559
>ISAnsp12
Length = 2926
Score = 30.2 bits (15), Expect = 1.1
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 195 agcagcccgtcgatctgcg 213
|||||| ||||||||||||
Sbjct: 2386 agcagctcgtcgatctgcg 2368
>IS882
Length = 3363
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 107 ctggcgctggccggg 121
|||||||||||||||
Sbjct: 640 ctggcgctggccggg 626
>ISMmg1
Length = 1359
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 9 gcggcgatgcgccgg 23
|||||||||||||||
Sbjct: 668 gcggcgatgcgccgg 654
>TnAs3
Length = 18735
Score = 28.2 bits (14), Expect = 4.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 10 cggcgatgcgccgg 23
||||||||||||||
Sbjct: 1594 cggcgatgcgccgg 1581
Score = 28.2 bits (14), Expect = 4.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 168 tgcggcgcatgcgt 181
||||||||||||||
Sbjct: 18531 tgcggcgcatgcgt 18544
>ISSoc1
Length = 1291
Score = 28.2 bits (14), Expect = 4.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 5 gcaggcggcgatgc 18
||||||||||||||
Sbjct: 739 gcaggcggcgatgc 752
>ISBj2
Length = 830
Score = 28.2 bits (14), Expect = 4.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 181 tgccgctgacgatg 194
||||||||||||||
Sbjct: 176 tgccgctgacgatg 163
>ISStu2
Length = 1760
Score = 28.2 bits (14), Expect = 4.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 106 gctggcgctggccg 119
||||||||||||||
Sbjct: 138 gctggcgctggccg 151
>ISSysp6
Length = 2172
Score = 28.2 bits (14), Expect = 4.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 181 tgccgctgacgatg 194
||||||||||||||
Sbjct: 1335 tgccgctgacgatg 1348
>ISStma17
Length = 1321
Score = 28.2 bits (14), Expect = 4.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 13 cgatgcgccgggcg 26
||||||||||||||
Sbjct: 854 cgatgcgccgggcg 841
>ISAcfe1
Length = 1772
Score = 28.2 bits (14), Expect = 4.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 143 gaagtgcaggcggt 156
||||||||||||||
Sbjct: 1536 gaagtgcaggcggt 1523
>ISMtsp9
Length = 1456
Score = 28.2 bits (14), Expect = 4.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 10 cggcgatgcgccgg 23
||||||||||||||
Sbjct: 818 cggcgatgcgccgg 805
>ISShes11
Length = 7669
Score = 28.2 bits (14), Expect = 4.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 168 tgcggcgcatgcgt 181
||||||||||||||
Sbjct: 7465 tgcggcgcatgcgt 7478
>ISMpo10
Length = 4911
Score = 28.2 bits (14), Expect = 4.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 194 gagcagcccgtcga 207
||||||||||||||
Sbjct: 4113 gagcagcccgtcga 4100
>ISMno23
Length = 2271
Score = 28.2 bits (14), Expect = 4.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 69 agcgtgtcggcggc 82
||||||||||||||
Sbjct: 1383 agcgtgtcggcggc 1370
>ISArsp6
Length = 26712
Score = 28.2 bits (14), Expect = 4.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 109 ggcgctggccgggg 122
||||||||||||||
Sbjct: 4979 ggcgctggccgggg 4992
Score = 28.2 bits (14), Expect = 4.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 109 ggcgctggccgggg 122
||||||||||||||
Sbjct: 18089 ggcgctggccgggg 18076
>ISArsp4
Length = 1400
Score = 28.2 bits (14), Expect = 4.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 193 tgagcagcccgtcg 206
||||||||||||||
Sbjct: 212 tgagcagcccgtcg 199
>ISMch8
Length = 1494
Score = 28.2 bits (14), Expect = 4.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 7 aggcggcgatgcgc 20
||||||||||||||
Sbjct: 816 aggcggcgatgcgc 803
>ISAnsp11
Length = 1510
Score = 28.2 bits (14), Expect = 4.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 147 tgcaggcggtcacc 160
||||||||||||||
Sbjct: 478 tgcaggcggtcacc 491
>ISMex23
Length = 1390
Score = 28.2 bits (14), Expect = 4.4
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 19 gccgggcgccgaggcggt 36
|||| |||||||||||||
Sbjct: 952 gccgcgcgccgaggcggt 935
>ISMsi5
Length = 1228
Score = 28.2 bits (14), Expect = 4.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 13 cgatgcgccgggcg 26
||||||||||||||
Sbjct: 814 cgatgcgccgggcg 801
>ISTha2
Length = 1268
Score = 28.2 bits (14), Expect = 4.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 109 ggcgctggccgggg 122
||||||||||||||
Sbjct: 427 ggcgctggccgggg 440
>ISThsp9
Length = 6215
Score = 28.2 bits (14), Expect = 4.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 69 agcgtgtcggcggc 82
||||||||||||||
Sbjct: 499 agcgtgtcggcggc 512
>ISApr7
Length = 3923
Score = 28.2 bits (14), Expect = 4.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 188 gacgatgagcagcc 201
||||||||||||||
Sbjct: 3793 gacgatgagcagcc 3806
>ISAfe7
Length = 1329
Score = 28.2 bits (14), Expect = 4.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 13 cgatgcgccgggcg 26
||||||||||||||
Sbjct: 863 cgatgcgccgggcg 850
>ISAnsp1
Length = 1520
Score = 28.2 bits (14), Expect = 4.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 62 gtcggcgagcgtgt 75
||||||||||||||
Sbjct: 407 gtcggcgagcgtgt 394
>ISThsp1
Length = 1539
Score = 28.2 bits (14), Expect = 4.4
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 195 agcagcccgtcgatctgc 212
|||||| |||||||||||
Sbjct: 589 agcagcgcgtcgatctgc 572
>ISSba6
Length = 1420
Score = 28.2 bits (14), Expect = 4.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 125 gtcgagtttgttga 138
||||||||||||||
Sbjct: 309 gtcgagtttgttga 296
>ISJsp1
Length = 1312
Score = 28.2 bits (14), Expect = 4.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 13 cgatgcgccgggcg 26
||||||||||||||
Sbjct: 854 cgatgcgccgggcg 841
>ISSusp1
Length = 1228
Score = 28.2 bits (14), Expect = 4.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 133 tgttgaccatgaag 146
||||||||||||||
Sbjct: 224 tgttgaccatgaag 237
>ISSod7
Length = 1419
Score = 28.2 bits (14), Expect = 4.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 125 gtcgagtttgttga 138
||||||||||||||
Sbjct: 308 gtcgagtttgttga 295
>ISAzo4
Length = 2757
Score = 28.2 bits (14), Expect = 4.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 146 gtgcaggcggtcac 159
||||||||||||||
Sbjct: 2727 gtgcaggcggtcac 2740
>ISDra6
Length = 1072
Score = 28.2 bits (14), Expect = 4.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 79 cggcatcaccgagg 92
||||||||||||||
Sbjct: 1031 cggcatcaccgagg 1044
>ISBlo1
Length = 2590
Score = 28.2 bits (14), Expect = 4.4
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 63 tcggcgagcgtgtcggcg 80
|||||||||||| |||||
Sbjct: 1829 tcggcgagcgtgccggcg 1812
>ISRso17
Length = 1471
Score = 28.2 bits (14), Expect = 4.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 13 cgatgcgccgggcg 26
||||||||||||||
Sbjct: 966 cgatgcgccgggcg 953
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_426_length_228_cov_0.84106_ID_6020
(228 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISGdi17 | IS21 | Gluconacetobacter diazotrophicus | 32 | 0.28 | |
| ISNml3 | IS1182 | Nakamurella multipartita | 30 | 1.1 | |
| ISPa25 | IS110 | IS1111 | Pseudomonas aeruginosa | 30 | 1.1 |
| ISNwi5 | IS481 | Nitrobacter winogradskyi | 30 | 1.1 | |
| ISNma21 | IS200/IS605 | IS1341 | Natrialba magadii | 28 | 4.4 |
| ISHtu3 | IS200/IS605 | IS1341 | Haloterrigena turkmenica | 28 | 4.4 |
| ISHvo11 | IS4 | ISH8 | Haloferax volcanii | 28 | 4.4 |
| ISButh7 | IS5 | IS903 | Burkholderia thailandensis | 28 | 4.4 |
| ISStsp4 | IS5 | ISL2 | Streptomyces sp. | 28 | 4.4 |
| ISPso2 | IS5 | IS427 | Paracoccus solventivorans | 28 | 4.4 |
| ISShes11 | Tn3 | Shewanella sp. | 28 | 4.4 | |
| ISPak1 | IS5 | IS427 | Paracoccus alkenifer | 28 | 4.4 |
| ISPam4 | IS5 | IS427 | Paracoccus aminophilus | 28 | 4.4 |
| ISPfr7 | ISL3 | Propionibacterium freudenreichii | 28 | 4.4 | |
| ISPfr4 | ISL3 | Propionibacterium freudenreichii | 28 | 4.4 | |
| ISAar23 | ISL3 | Arthrobacter arilaitensis | 28 | 4.4 | |
| ISAar20 | ISL3 | Arthrobacter arilaitensis | 28 | 4.4 | |
| ISSpo7 | IS5 | IS427 | Silicibacter pomeroyi | 28 | 4.4 |
| ISAzo33 | IS630 | Azoarcus sp. | 28 | 4.4 | |
| ISAzo32 | IS630 | Azoarcus sp. | 28 | 4.4 | |
| ISKpn12 | IS5 | IS427 | Klebsiella pneumoniae | 28 | 4.4 |
| ISGur1 | IS4 | ISPepr1 | Geobacter uraniumreducens | 28 | 4.4 |
| ISAli15 | IS66 | Azospirillum lipoferum | 28 | 4.4 | |
| IS885 | IS630 | Ralstonia eutropha | 28 | 4.4 | |
| ISPpa2 | IS5 | IS427 | Paracoccus pantotrophus | 28 | 4.4 |
| IS1383 | IS110 | IS1111 | Pseudomonas putida | 28 | 4.4 |
| IS117 | IS110 | - | Streptomyces coelicolor | 28 | 4.4 |
>ISGdi17
Length = 2482
Score = 32.2 bits (16), Expect = 0.28
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 201 cgaagacttcgcccca 216
||||||||||||||||
Sbjct: 2259 cgaagacttcgcccca 2244
>ISNml3
Length = 1798
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 145 acggccgaccgcagc 159
|||||||||||||||
Sbjct: 1178 acggccgaccgcagc 1164
>ISPa25
Length = 1410
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 210 cgccccagccgtcgc 224
|||||||||||||||
Sbjct: 886 cgccccagccgtcgc 872
>ISNwi5
Length = 1003
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 177 gaacgtcttcctgat 191
|||||||||||||||
Sbjct: 437 gaacgtcttcctgat 423
>ISNma21
Length = 1548
Score = 28.2 bits (14), Expect = 4.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 168 cgacaagaagaacg 181
||||||||||||||
Sbjct: 652 cgacaagaagaacg 665
>ISHtu3
Length = 1471
Score = 28.2 bits (14), Expect = 4.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 39 cgcacgagcgagcg 52
||||||||||||||
Sbjct: 1150 cgcacgagcgagcg 1163
>ISHvo11
Length = 1445
Score = 28.2 bits (14), Expect = 4.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 78 gcgcgacccggtcg 91
||||||||||||||
Sbjct: 900 gcgcgacccggtcg 913
>ISButh7
Length = 1128
Score = 28.2 bits (14), Expect = 4.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 71 cgcctgtgcgcgac 84
||||||||||||||
Sbjct: 443 cgcctgtgcgcgac 430
>ISStsp4
Length = 902
Score = 28.2 bits (14), Expect = 4.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 79 cgcgacccggtcga 92
||||||||||||||
Sbjct: 461 cgcgacccggtcga 448
>ISPso2
Length = 832
Score = 28.2 bits (14), Expect = 4.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 89 tcgagatcatgttc 102
||||||||||||||
Sbjct: 704 tcgagatcatgttc 717
>ISShes11
Length = 7669
Score = 28.2 bits (14), Expect = 4.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 186 cctgatgcagcgca 199
||||||||||||||
Sbjct: 982 cctgatgcagcgca 995
>ISPak1
Length = 853
Score = 28.2 bits (14), Expect = 4.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 89 tcgagatcatgttc 102
||||||||||||||
Sbjct: 714 tcgagatcatgttc 727
>ISPam4
Length = 865
Score = 28.2 bits (14), Expect = 4.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 89 tcgagatcatgttc 102
||||||||||||||
Sbjct: 726 tcgagatcatgttc 739
>ISPfr7
Length = 1423
Score = 28.2 bits (14), Expect = 4.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 99 gttcaccggcttca 112
||||||||||||||
Sbjct: 808 gttcaccggcttca 821
>ISPfr4
Length = 1415
Score = 28.2 bits (14), Expect = 4.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 99 gttcaccggcttca 112
||||||||||||||
Sbjct: 800 gttcaccggcttca 813
>ISAar23
Length = 1449
Score = 28.2 bits (14), Expect = 4.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 99 gttcaccggcttca 112
||||||||||||||
Sbjct: 834 gttcaccggcttca 847
>ISAar20
Length = 1449
Score = 28.2 bits (14), Expect = 4.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 99 gttcaccggcttca 112
||||||||||||||
Sbjct: 834 gttcaccggcttca 847
>ISSpo7
Length = 843
Score = 28.2 bits (14), Expect = 4.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 89 tcgagatcatgttc 102
||||||||||||||
Sbjct: 704 tcgagatcatgttc 717
>ISAzo33
Length = 1100
Score = 28.2 bits (14), Expect = 4.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 90 cgagatcatgttca 103
||||||||||||||
Sbjct: 680 cgagatcatgttca 667
>ISAzo32
Length = 1100
Score = 28.2 bits (14), Expect = 4.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 90 cgagatcatgttca 103
||||||||||||||
Sbjct: 680 cgagatcatgttca 667
>ISKpn12
Length = 842
Score = 28.2 bits (14), Expect = 4.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 89 tcgagatcatgttc 102
||||||||||||||
Sbjct: 707 tcgagatcatgttc 720
>ISGur1
Length = 1556
Score = 28.2 bits (14), Expect = 4.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 80 gcgacccggtcgag 93
||||||||||||||
Sbjct: 946 gcgacccggtcgag 959
>ISAli15
Length = 2658
Score = 28.2 bits (14), Expect = 4.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 146 cggccgaccgcagc 159
||||||||||||||
Sbjct: 990 cggccgaccgcagc 1003
>IS885
Length = 1100
Score = 28.2 bits (14), Expect = 4.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 90 cgagatcatgttca 103
||||||||||||||
Sbjct: 680 cgagatcatgttca 667
>ISPpa2
Length = 832
Score = 28.2 bits (14), Expect = 4.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 89 tcgagatcatgttc 102
||||||||||||||
Sbjct: 704 tcgagatcatgttc 717
>IS1383
Length = 1419
Score = 28.2 bits (14), Expect = 4.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 146 cggccgaccgcagc 159
||||||||||||||
Sbjct: 29 cggccgaccgcagc 42
>IS117
Length = 2527
Score = 28.2 bits (14), Expect = 4.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 150 cgaccgcagccgct 163
||||||||||||||
Sbjct: 852 cgaccgcagccgct 839
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_427_length_228_cov_1.24503_ID_6022
(228 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISStau3 | IS66 | ISBst12 | Stigmatella aurantiaca | 34 | 0.072 |
| ISAzvi9 | IS3 | IS3 | Azotobacter vinelandii | 34 | 0.072 |
| ISNha10 | IS256 | Nitrobacter hamburgensis | 32 | 0.28 | |
| ISSoc2 | IS607 | Synechococcus sp. | 32 | 0.28 | |
| ISStau5 | IS66 | ISBst12 | Stigmatella aurantiaca | 32 | 0.28 |
| ISBrsp5 | IS66 | ISBst12 | Bradyrhizobium sp. | 32 | 0.28 |
| ISAzvi12 | IS110 | IS1111 | Azotobacter vinelandii | 32 | 0.28 |
| TnAs1 | Tn3 | Aeromonas salmonicida | 30 | 1.1 | |
| TnShfr1 | Tn3 | Shewanella frigidimarina | 30 | 1.1 | |
| ISPa40 | Tn3 | Pseudomonas aeruginosa | 30 | 1.1 | |
| ISFsp12 | ISAzo13 | Frankia sp. | 30 | 1.1 | |
| ISFsp15 | IS1380 | Frankia sp. | 30 | 1.1 | |
| ISMex29 | IS110 | IS1111 | Methylobacterium extorquens | 30 | 1.1 |
| ISRtr1 | IS256 | - | Rhizobium tropici | 30 | 1.1 |
| TnAs3 | Tn3 | Aeromonas salmonicida | 28 | 4.4 | |
| ISSoc9 | IS200/IS605 | IS1341 | Synechococcus sp | 28 | 4.4 |
| ISNph26 | IS200/IS605 | IS1341 | Natronomonas pharaonis | 28 | 4.4 |
| ISHla18 | IS200/IS605 | IS1341 | Halorubrum lacusprofundi | 28 | 4.4 |
| ISPsp9 | IS1380 | Pseudomonas sp. | 28 | 4.4 | |
| ISPna6 | IS701 | ISAba11 | Polaromonas naphthalenivorans | 28 | 4.4 |
| ISMyma8 | IS3 | IS407 | Mycobacterium marinum | 28 | 4.4 |
| ISAzs13 | ISL3 | Azospirillum sp. | 28 | 4.4 | |
| ISHla4 | IS5 | ISH1 | Halorubrum lacusprofundi | 28 | 4.4 |
| ISShes11 | Tn3 | Shewanella sp. | 28 | 4.4 | |
| ISRhsp6 | IS5 | IS5 | Rhodobacter sphaeroides | 28 | 4.4 |
| ISRhru4 | IS256 | Rhodospirillum rubrum | 28 | 4.4 | |
| ISAar29 | IS110 | Arthrobacter arilaitensis | 28 | 4.4 | |
| ISFpe1 | IS66 | Fulvimarina pelagi | 28 | 4.4 | |
| ISLxc1 | IS21 | Leifsonia xyli | 28 | 4.4 | |
| ISAzo9 | IS630 | Azoarcus sp. | 28 | 4.4 | |
| ISAzo8 | ISAs1 | Azoarcus sp. | 28 | 4.4 | |
| ISRme13 | IS3 | IS3 | Ralstonia metallidurans | 28 | 4.4 |
| ISPepr1 | IS4 | ISPepr1 | Pelobacter propionicus | 28 | 4.4 |
| ISPpu20 | IS1182 | Pseudomonas putida | 28 | 4.4 | |
| ISBmu3 | IS21 | Burkholderia multivorans | 28 | 4.4 | |
| IS882 | Tn3 | Ralstonia eutropha | 28 | 4.4 | |
| ISLxx3 | IS21 | Leifsonia xyli | 28 | 4.4 | |
| ISRm9 | IS21 | - | Rhizobium meliloti | 28 | 4.4 |
| IS285 | IS256 | - | Yersinia pestis | 28 | 4.4 |
>ISStau3
Length = 1579
Score = 34.2 bits (17), Expect = 0.072
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 14 caccagcgccatcagct 30
|||||||||||||||||
Sbjct: 198 caccagcgccatcagct 182
>ISAzvi9
Length = 1246
Score = 34.2 bits (17), Expect = 0.072
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 159 ttgctggcggcgcttcg 175
|||||||||||||||||
Sbjct: 484 ttgctggcggcgcttcg 468
>ISNha10
Length = 1428
Score = 32.2 bits (16), Expect = 0.28
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 9 ccttccaccagcgcca 24
||||||||||||||||
Sbjct: 730 ccttccaccagcgcca 715
>ISSoc2
Length = 1832
Score = 32.2 bits (16), Expect = 0.28
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 188 caggtcggagcgcagg 203
||||||||||||||||
Sbjct: 814 caggtcggagcgcagg 799
>ISStau5
Length = 1580
Score = 32.2 bits (16), Expect = 0.28
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 15 accagcgccatcagct 30
||||||||||||||||
Sbjct: 198 accagcgccatcagct 183
>ISBrsp5
Length = 1541
Score = 32.2 bits (16), Expect = 0.28
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 12 tccaccagcgccatcagctc 31
|||||||||||| |||||||
Sbjct: 1006 tccaccagcgccgtcagctc 987
>ISAzvi12
Length = 1248
Score = 32.2 bits (16), Expect = 0.28
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 152 ggccgctttgctggcggcgc 171
|||||| |||||||||||||
Sbjct: 928 ggccgccttgctggcggcgc 909
>TnAs1
Length = 6694
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 197 gcgcaggcgctgatc 211
|||||||||||||||
Sbjct: 5378 gcgcaggcgctgatc 5392
>TnShfr1
Length = 5131
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 197 gcgcaggcgctgatc 211
|||||||||||||||
Sbjct: 3812 gcgcaggcgctgatc 3826
>ISPa40
Length = 6592
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 197 gcgcaggcgctgatc 211
|||||||||||||||
Sbjct: 5276 gcgcaggcgctgatc 5290
>ISFsp12
Length = 1730
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 15 accagcgccatcagc 29
|||||||||||||||
Sbjct: 353 accagcgccatcagc 339
>ISFsp15
Length = 1695
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 37 cacgctgcgcgccct 51
|||||||||||||||
Sbjct: 1477 cacgctgcgcgccct 1491
>ISMex29
Length = 1339
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 39 cgctgcgcgccctga 53
|||||||||||||||
Sbjct: 1241 cgctgcgcgccctga 1227
>ISRtr1
Length = 1364
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 16 ccagcgccatcagct 30
|||||||||||||||
Sbjct: 202 ccagcgccatcagct 188
>TnAs3
Length = 18735
Score = 28.2 bits (14), Expect = 4.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 197 gcgcaggcgctgat 210
||||||||||||||
Sbjct: 17419 gcgcaggcgctgat 17432
>ISSoc9
Length = 1514
Score = 28.2 bits (14), Expect = 4.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 153 gccgctttgctggc 166
||||||||||||||
Sbjct: 199 gccgctttgctggc 212
>ISNph26
Length = 1611
Score = 28.2 bits (14), Expect = 4.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 159 ttgctggcggcgct 172
||||||||||||||
Sbjct: 377 ttgctggcggcgct 364
>ISHla18
Length = 1495
Score = 28.2 bits (14), Expect = 4.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 2 cgtgatgccttcca 15
||||||||||||||
Sbjct: 1146 cgtgatgccttcca 1133
>ISPsp9
Length = 1718
Score = 28.2 bits (14), Expect = 4.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 69 atgtcgccggtctc 82
||||||||||||||
Sbjct: 701 atgtcgccggtctc 688
>ISPna6
Length = 1124
Score = 28.2 bits (14), Expect = 4.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 13 ccaccagcgccatc 26
||||||||||||||
Sbjct: 348 ccaccagcgccatc 335
>ISMyma8
Length = 1247
Score = 28.2 bits (14), Expect = 4.4
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 60 gtcggctcgatgtcgccg 77
|||||| |||||||||||
Sbjct: 694 gtcggcgcgatgtcgccg 711
>ISAzs13
Length = 1769
Score = 28.2 bits (14), Expect = 4.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 110 ctcgagcatgcgat 123
||||||||||||||
Sbjct: 1713 ctcgagcatgcgat 1700
>ISHla4
Length = 1804
Score = 28.2 bits (14), Expect = 4.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 10 cttccaccagcgcc 23
||||||||||||||
Sbjct: 817 cttccaccagcgcc 804
>ISShes11
Length = 7669
Score = 28.2 bits (14), Expect = 4.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 197 gcgcaggcgctgat 210
||||||||||||||
Sbjct: 6353 gcgcaggcgctgat 6366
>ISRhsp6
Length = 1486
Score = 28.2 bits (14), Expect = 4.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 67 cgatgtcgccggtc 80
||||||||||||||
Sbjct: 293 cgatgtcgccggtc 280
>ISRhru4
Length = 1411
Score = 28.2 bits (14), Expect = 4.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 16 ccagcgccatcagc 29
||||||||||||||
Sbjct: 256 ccagcgccatcagc 243
>ISAar29
Length = 1385
Score = 28.2 bits (14), Expect = 4.4
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 169 cgcttcggtgctggccac 186
||||||||||| ||||||
Sbjct: 907 cgcttcggtgcgggccac 890
>ISFpe1
Length = 2489
Score = 28.2 bits (14), Expect = 4.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 77 ggtctcgatgagcg 90
||||||||||||||
Sbjct: 2335 ggtctcgatgagcg 2322
>ISLxc1
Length = 3533
Score = 28.2 bits (14), Expect = 4.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 74 gccggtctcgatga 87
||||||||||||||
Sbjct: 3438 gccggtctcgatga 3425
>ISAzo9
Length = 1483
Score = 28.2 bits (14), Expect = 4.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 134 gttgcccagcacga 147
||||||||||||||
Sbjct: 557 gttgcccagcacga 544
>ISAzo8
Length = 1261
Score = 28.2 bits (14), Expect = 4.4
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 140 cagcacgaccatggccgc 157
||||||||||| ||||||
Sbjct: 477 cagcacgaccaaggccgc 494
>ISRme13
Length = 1288
Score = 28.2 bits (14), Expect = 4.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 17 cagcgccatcagct 30
||||||||||||||
Sbjct: 636 cagcgccatcagct 623
>ISPepr1
Length = 1556
Score = 28.2 bits (14), Expect = 4.4
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 156 gctttgctggcggcgctt 173
||||| ||||||||||||
Sbjct: 715 gctttcctggcggcgctt 698
>ISPpu20
Length = 1598
Score = 28.2 bits (14), Expect = 4.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 17 cagcgccatcagct 30
||||||||||||||
Sbjct: 1493 cagcgccatcagct 1480
>ISBmu3
Length = 2697
Score = 28.2 bits (14), Expect = 4.4
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 128 cgtgctgttgcccagcac 145
|||| |||||||||||||
Sbjct: 988 cgtggtgttgcccagcac 971
>IS882
Length = 3363
Score = 28.2 bits (14), Expect = 4.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 152 ggccgctttgctgg 165
||||||||||||||
Sbjct: 520 ggccgctttgctgg 533
>ISLxx3
Length = 2637
Score = 28.2 bits (14), Expect = 4.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 74 gccggtctcgatga 87
||||||||||||||
Sbjct: 2544 gccggtctcgatga 2531
>ISRm9
Length = 2798
Score = 28.2 bits (14), Expect = 4.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 160 tgctggcggcgctt 173
||||||||||||||
Sbjct: 1829 tgctggcggcgctt 1842
>IS285
Length = 1318
Score = 28.2 bits (14), Expect = 4.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 16 ccagcgccatcagc 29
||||||||||||||
Sbjct: 952 ccagcgccatcagc 939
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_428_length_228_cov_0.741722_ID_6024
(228 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISBj1 | IS1380 | - | Bradyrhizobium japonicum | 32 | 0.28 |
| ISSfu1 | IS1380 | Syntrophobacter fumaroxidans | 30 | 1.1 | |
| ISGme4 | IS21 | Geobacter metallireducens | 30 | 1.1 | |
| ISSpo2 | IS1380 | Silicibacter pomeroyi | 30 | 1.1 | |
| ISGsu6 | IS21 | Geobacter sulfurreducens | 30 | 1.1 | |
| ISHam3 | IS200/IS605 | IS1341 | Haloarcula amylolytica | 28 | 4.4 |
| ISSm4 | ISL3 | Serratia marcescens | 28 | 4.4 | |
| ISLesp2 | ISKra4 | ISKra4 | Leptolyngbya sp. | 28 | 4.4 |
| ISAzs26 | ISKra4 | ISAzba1 | Azospirillum sp. | 28 | 4.4 |
| ISShes11 | Tn3 | Shewanella sp. | 28 | 4.4 | |
| ISRob1 | IS66 | Ruminococcus obeum | 28 | 4.4 | |
| ISAtu6 | IS66 | - | Agrobacterium tumefaciens | 28 | 4.4 |
| ISStr1 | IS1380 | Salinispora tropica | 28 | 4.4 | |
| ISAar7 | IS21 | Arthrobacter arilaitensis | 28 | 4.4 | |
| ISAli10 | IS66 | Azospirillum lipoferum | 28 | 4.4 | |
| ISMysp2 | IS1595 | ISSod11 | Mycobacterium sp | 28 | 4.4 |
| ISMfl2 | IS1595 | ISSod11 | Mycobacterium flavescens | 28 | 4.4 |
| ISBlo11 | IS3 | IS150 | Bifidobacterium longum | 28 | 4.4 |
| IS1249 | IS256 | IS1249 | Corynebacterium xerosis | 28 | 4.4 |
| IS1131 | IS66 | - | Agrobacterium tumefaciens | 28 | 4.4 |
>ISBj1
Length = 2071
Score = 32.2 bits (16), Expect = 0.28
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 65 ttcgccgcctgacgac 80
||||||||||||||||
Sbjct: 1983 ttcgccgcctgacgac 1968
>ISSfu1
Length = 1666
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 62 agcttcgccgcctga 76
|||||||||||||||
Sbjct: 477 agcttcgccgcctga 491
>ISGme4
Length = 1976
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 80 cggggcgccggtggc 94
|||||||||||||||
Sbjct: 1367 cggggcgccggtggc 1353
>ISSpo2
Length = 1664
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 100 gctgcgctggctgag 114
|||||||||||||||
Sbjct: 491 gctgcgctggctgag 505
>ISGsu6
Length = 1975
Score = 30.2 bits (15), Expect = 1.1
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 80 cggggcgccggtggc 94
|||||||||||||||
Sbjct: 1366 cggggcgccggtggc 1352
>ISHam3
Length = 1551
Score = 28.2 bits (14), Expect = 4.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 140 atctcgtgcctgtc 153
||||||||||||||
Sbjct: 171 atctcgtgcctgtc 158
>ISSm4
Length = 9109
Score = 28.2 bits (14), Expect = 4.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 74 tgacgacggggcgc 87
||||||||||||||
Sbjct: 6813 tgacgacggggcgc 6826
>ISLesp2
Length = 1502
Score = 28.2 bits (14), Expect = 4.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 101 ctgcgctggctgag 114
||||||||||||||
Sbjct: 1174 ctgcgctggctgag 1187
>ISAzs26
Length = 2226
Score = 28.2 bits (14), Expect = 4.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 197 gccatcgccatgcc 210
||||||||||||||
Sbjct: 1812 gccatcgccatgcc 1799
>ISShes11
Length = 7669
Score = 28.2 bits (14), Expect = 4.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 99 agctgcgctggctg 112
||||||||||||||
Sbjct: 2046 agctgcgctggctg 2059
>ISRob1
Length = 2546
Score = 28.2 bits (14), Expect = 4.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 98 cagctgcgctggct 111
||||||||||||||
Sbjct: 783 cagctgcgctggct 796
>ISAtu6
Length = 2798
Score = 28.2 bits (14), Expect = 4.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 62 agcttcgccgcctg 75
||||||||||||||
Sbjct: 960 agcttcgccgcctg 947
>ISStr1
Length = 1664
Score = 28.2 bits (14), Expect = 4.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 101 ctgcgctggctgag 114
||||||||||||||
Sbjct: 440 ctgcgctggctgag 453
>ISAar7
Length = 2983
Score = 28.2 bits (14), Expect = 4.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 58 cctcagcttcgccg 71
||||||||||||||
Sbjct: 721 cctcagcttcgccg 708
>ISAli10
Length = 2584
Score = 28.2 bits (14), Expect = 4.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 83 ggcgccggtggctg 96
||||||||||||||
Sbjct: 1473 ggcgccggtggctg 1460
>ISMysp2
Length = 1095
Score = 28.2 bits (14), Expect = 4.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 123 ccaggcccacgcgg 136
||||||||||||||
Sbjct: 403 ccaggcccacgcgg 390
>ISMfl2
Length = 1095
Score = 28.2 bits (14), Expect = 4.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 123 ccaggcccacgcgg 136
||||||||||||||
Sbjct: 403 ccaggcccacgcgg 390
>ISBlo11
Length = 1432
Score = 28.2 bits (14), Expect = 4.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 176 ggctcaagaacgag 189
||||||||||||||
Sbjct: 1237 ggctcaagaacgag 1250
>IS1249
Length = 1385
Score = 28.2 bits (14), Expect = 4.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 85 cgccggtggctgcc 98
||||||||||||||
Sbjct: 491 cgccggtggctgcc 504
>IS1131
Length = 2773
Score = 28.2 bits (14), Expect = 4.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 62 agcttcgccgcctg 75
||||||||||||||
Sbjct: 957 agcttcgccgcctg 944
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_429_length_206_cov_66.4884_ID_6026
(206 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISGau7 | IS21 | Gemmatimonas aurantiaca | 32 | 0.26 | |
| ISStsp1 | ISAzo13 | Streptomyces sp. | 32 | 0.26 | |
| ISHwa20 | IS5 | Haloquadratum walsbyi | 30 | 1.0 | |
| ISPko2 | IS256 | Paracoccus kondratievae | 28 | 4.0 | |
| ISNpe3 | IS630 | Natrinema pellirubrum | 28 | 4.0 | |
| ISPa43 | Tn3 | Pseudomonas aeruginosa | 28 | 4.0 | |
| ISUnCu16 | IS66 | ISBst12 | Uncultured bacterium | 28 | 4.0 |
| ISPve1 | IS21 | Paracoccus versutus | 28 | 4.0 | |
| ISAzs29 | Tn3 | Azospirillum sp. | 28 | 4.0 | |
| ISAzs17 | Tn3 | Azospirillum sp. | 28 | 4.0 | |
| ISAzs14 | IS630 | Azospirillum sp. | 28 | 4.0 | |
| ISPaes3 | IS256 | Paracoccus aestuarii | 28 | 4.0 | |
| ISNha6 | IS5 | IS5 | Nitrobacter hamburgensis | 28 | 4.0 |
| ISMno5 | ISL3 | Methylobacterium nodulans | 28 | 4.0 | |
| ISThsp16 | IS1182 | Thiomonas sp. | 28 | 4.0 | |
| ISCARN81 | IS3 | IS3 | Metagenomic data from CARNOULES | 28 | 4.0 |
| ISBad1 | IS21 | Bifidobacterium adolescentis | 28 | 4.0 | |
| ISAzo9 | IS630 | Azoarcus sp. | 28 | 4.0 | |
| ISCsp1 | IS256 | Comamonas sp | 28 | 4.0 | |
| IS881 | IS5 | IS5 | Ralstonia eutropha | 28 | 4.0 |
| IS999 | IS3 | IS51 | Mycobacterium avium | 28 | 4.0 |
>ISGau7
Length = 2510
Score = 32.2 bits (16), Expect = 0.26
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 70 gcggcggccggccgac 85
||||||||||||||||
Sbjct: 260 gcggcggccggccgac 275
>ISStsp1
Length = 1694
Score = 32.2 bits (16), Expect = 0.26
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 188 cgccggacccgcccca 203
||||||||||||||||
Sbjct: 281 cgccggacccgcccca 266
Score = 32.2 bits (16), Expect = 0.26
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 137 cgccggacccgcccca 152
||||||||||||||||
Sbjct: 281 cgccggacccgcccca 266
Score = 32.2 bits (16), Expect = 0.26
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 35 cgccggacccgcccca 50
||||||||||||||||
Sbjct: 281 cgccggacccgcccca 266
>ISHwa20
Length = 1075
Score = 30.2 bits (15), Expect = 1.0
Identities = 21/23 (91%)
Strand = Plus / Minus
Query: 146 cgccccacattcgccggggcgaa 168
||||||| ||||||||||||||
Sbjct: 198 cgccccatcttcgccggggcgaa 176
Score = 30.2 bits (15), Expect = 1.0
Identities = 21/23 (91%)
Strand = Plus / Minus
Query: 95 cgccccacattcgccggggcgaa 117
||||||| ||||||||||||||
Sbjct: 198 cgccccatcttcgccggggcgaa 176
Score = 30.2 bits (15), Expect = 1.0
Identities = 21/23 (91%)
Strand = Plus / Minus
Query: 44 cgccccacattcgccggggcgaa 66
||||||| ||||||||||||||
Sbjct: 198 cgccccatcttcgccggggcgaa 176
Score = 28.2 bits (14), Expect = 4.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 2 ttcgccggggcgaa 15
||||||||||||||
Sbjct: 189 ttcgccggggcgaa 176
>ISPko2
Length = 1396
Score = 28.2 bits (14), Expect = 4.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 120 tgcggcggcggaac 133
||||||||||||||
Sbjct: 1178 tgcggcggcggaac 1165
Score = 28.2 bits (14), Expect = 4.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 18 tgcggcggcggaac 31
||||||||||||||
Sbjct: 1178 tgcggcggcggaac 1165
>ISNpe3
Length = 1055
Score = 28.2 bits (14), Expect = 4.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 173 cggcggctgaacgg 186
||||||||||||||
Sbjct: 496 cggcggctgaacgg 483
>ISPa43
Length = 19903
Score = 28.2 bits (14), Expect = 4.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 24 ggcggaacgggcgc 37
||||||||||||||
Sbjct: 16948 ggcggaacgggcgc 16961
Score = 28.2 bits (14), Expect = 4.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 126 ggcggaacgggcgc 139
||||||||||||||
Sbjct: 16948 ggcggaacgggcgc 16961
>ISUnCu16
Length = 1532
Score = 28.2 bits (14), Expect = 4.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 24 ggcggaacgggcgc 37
||||||||||||||
Sbjct: 1302 ggcggaacgggcgc 1315
Score = 28.2 bits (14), Expect = 4.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 126 ggcggaacgggcgc 139
||||||||||||||
Sbjct: 1302 ggcggaacgggcgc 1315
>ISPve1
Length = 2503
Score = 28.2 bits (14), Expect = 4.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 166 gaagttgcggcggc 179
||||||||||||||
Sbjct: 858 gaagttgcggcggc 845
Score = 28.2 bits (14), Expect = 4.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 115 gaagttgcggcggc 128
||||||||||||||
Sbjct: 858 gaagttgcggcggc 845
Score = 28.2 bits (14), Expect = 4.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 64 gaagttgcggcggc 77
||||||||||||||
Sbjct: 858 gaagttgcggcggc 845
Score = 28.2 bits (14), Expect = 4.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 13 gaagttgcggcggc 26
||||||||||||||
Sbjct: 858 gaagttgcggcggc 845
>ISAzs29
Length = 3897
Score = 28.2 bits (14), Expect = 4.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 20 cggcggcggaacgg 33
||||||||||||||
Sbjct: 2879 cggcggcggaacgg 2892
Score = 28.2 bits (14), Expect = 4.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 122 cggcggcggaacgg 135
||||||||||||||
Sbjct: 2879 cggcggcggaacgg 2892
>ISAzs17
Length = 7252
Score = 28.2 bits (14), Expect = 4.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 71 cggcggccggccga 84
||||||||||||||
Sbjct: 639 cggcggccggccga 626
>ISAzs14
Length = 1176
Score = 28.2 bits (14), Expect = 4.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 70 gcggcggccggccg 83
||||||||||||||
Sbjct: 348 gcggcggccggccg 335
>ISPaes3
Length = 1393
Score = 28.2 bits (14), Expect = 4.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 120 tgcggcggcggaac 133
||||||||||||||
Sbjct: 1175 tgcggcggcggaac 1162
Score = 28.2 bits (14), Expect = 4.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 18 tgcggcggcggaac 31
||||||||||||||
Sbjct: 1175 tgcggcggcggaac 1162
>ISNha6
Length = 1547
Score = 28.2 bits (14), Expect = 4.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 70 gcggcggccggccg 83
||||||||||||||
Sbjct: 341 gcggcggccggccg 328
>ISMno5
Length = 1728
Score = 28.2 bits (14), Expect = 4.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 34 gcgccggacccgcc 47
||||||||||||||
Sbjct: 355 gcgccggacccgcc 368
Score = 28.2 bits (14), Expect = 4.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 136 gcgccggacccgcc 149
||||||||||||||
Sbjct: 355 gcgccggacccgcc 368
Score = 28.2 bits (14), Expect = 4.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 187 gcgccggacccgcc 200
||||||||||||||
Sbjct: 355 gcgccggacccgcc 368
>ISThsp16
Length = 1602
Score = 28.2 bits (14), Expect = 4.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 121 gcggcggcggaacg 134
||||||||||||||
Sbjct: 407 gcggcggcggaacg 394
Score = 28.2 bits (14), Expect = 4.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 19 gcggcggcggaacg 32
||||||||||||||
Sbjct: 407 gcggcggcggaacg 394
>ISCARN81
Length = 1406
Score = 28.2 bits (14), Expect = 4.0
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 158 gccggggcgaagttgcgg 175
||||| ||||||||||||
Sbjct: 748 gccggagcgaagttgcgg 731
Score = 28.2 bits (14), Expect = 4.0
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 107 gccggggcgaagttgcgg 124
||||| ||||||||||||
Sbjct: 748 gccggagcgaagttgcgg 731
Score = 28.2 bits (14), Expect = 4.0
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 56 gccggggcgaagttgcgg 73
||||| ||||||||||||
Sbjct: 748 gccggagcgaagttgcgg 731
Score = 28.2 bits (14), Expect = 4.0
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 5 gccggggcgaagttgcgg 22
||||| ||||||||||||
Sbjct: 748 gccggagcgaagttgcgg 731
>ISBad1
Length = 2525
Score = 28.2 bits (14), Expect = 4.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 125 cggcggaacgggcg 138
||||||||||||||
Sbjct: 323 cggcggaacgggcg 310
Score = 28.2 bits (14), Expect = 4.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 23 cggcggaacgggcg 36
||||||||||||||
Sbjct: 323 cggcggaacgggcg 310
>ISAzo9
Length = 1483
Score = 28.2 bits (14), Expect = 4.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 71 cggcggccggccga 84
||||||||||||||
Sbjct: 199 cggcggccggccga 212
>ISCsp1
Length = 1393
Score = 28.2 bits (14), Expect = 4.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 78 cggccgactggggg 91
||||||||||||||
Sbjct: 1195 cggccgactggggg 1208
>IS881
Length = 3033
Score = 28.2 bits (14), Expect = 4.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 147 gccccacattcgcc 160
||||||||||||||
Sbjct: 2903 gccccacattcgcc 2890
Score = 28.2 bits (14), Expect = 4.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 96 gccccacattcgcc 109
||||||||||||||
Sbjct: 2903 gccccacattcgcc 2890
Score = 28.2 bits (14), Expect = 4.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 45 gccccacattcgcc 58
||||||||||||||
Sbjct: 2903 gccccacattcgcc 2890
>IS999
Length = 1347
Score = 28.2 bits (14), Expect = 4.0
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 158 gccggggcgaagttgcgg 175
|||| |||||||||||||
Sbjct: 778 gccgcggcgaagttgcgg 761
Score = 28.2 bits (14), Expect = 4.0
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 107 gccggggcgaagttgcgg 124
|||| |||||||||||||
Sbjct: 778 gccgcggcgaagttgcgg 761
Score = 28.2 bits (14), Expect = 4.0
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 56 gccggggcgaagttgcgg 73
|||| |||||||||||||
Sbjct: 778 gccgcggcgaagttgcgg 761
Score = 28.2 bits (14), Expect = 4.0
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 5 gccggggcgaagttgcgg 22
|||| |||||||||||||
Sbjct: 778 gccgcggcgaagttgcgg 761
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_430_length_152_cov_72.8667_ID_6028
(152 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| IS1557 | ISL3 | Mycobacterium tuberculosis | 34 | 0.046 | |
| ISPa52 | IS5 | IS5 | Pseudomonas aeruginosa | 32 | 0.18 |
| ISPst5 | IS5 | IS5 | Pseudomonas stutzeri | 32 | 0.18 |
| ISMipa1 | ISNCY | ISDol1 | Microthrix parvicella | 30 | 0.72 |
| ISBcen28 | IS21 | Burkholderia cenocepacia | 30 | 0.72 | |
| IS1538 | IS607 | Mycobacterium tuberculosis | 30 | 0.72 | |
| TnAs2 | Tn3 | Aeromonas salmonicida | 28 | 2.9 | |
| ISAs19 | IS481 | Aeromonas salmonicida | 28 | 2.9 | |
| ISSen6 | IS200/IS605 | Salmonella enterica | 28 | 2.9 | |
| ISSm4 | ISL3 | Serratia marcescens | 28 | 2.9 | |
| ISNml4 | IS256 | Nakamurella multipartita | 28 | 2.9 | |
| ISEc49 | IS66 | Escherichia coli | 28 | 2.9 | |
| ISFsp12 | ISAzo13 | Frankia sp. | 28 | 2.9 | |
| ISPpu16 | IS1182 | Pseudomonas putida | 28 | 2.9 | |
| ISAnsp11 | IS3 | IS3 | Anaeromyxobacter sp. | 28 | 2.9 |
| ISStma7 | IS110 | Stenotrophomonas maltophilia | 28 | 2.9 | |
| ISTesp2 | ISL3 | Terrabacter sp. | 28 | 2.9 | |
| IS609 | IS200/IS605 | Escherichia coli | 28 | 2.9 | |
| ISXc4 | Tn3 | - | Xanthomonas campestris | 28 | 2.9 |
| ISMt1 | IS5 | IS427 | Mycobacterium tuberculosis | 28 | 2.9 |
| ISBugl1 | IS3 | IS2 | Burkholderia glumae | 28 | 2.9 |
| IS4811 | IS5 | IS1031 | Streptomyces lividans | 28 | 2.9 |
| IS1417 | IS3 | IS2 | Burkholderia glumae | 28 | 2.9 |
>IS1557
Length = 1509
Score = 34.2 bits (17), Expect = 0.046
Identities = 23/25 (92%)
Strand = Plus / Minus
Query: 52 cacccacggaagggtcagaggagcc 76
|||||||||||| |||||| |||||
Sbjct: 60 cacccacggaagtgtcagaagagcc 36
>ISPa52
Length = 1190
Score = 32.2 bits (16), Expect = 0.18
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 120 acccggagcgggtgctcgac 139
||||||| ||||||||||||
Sbjct: 900 acccggaacgggtgctcgac 881
>ISPst5
Length = 1191
Score = 32.2 bits (16), Expect = 0.18
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 120 acccggagcgggtgctcgac 139
||||||| ||||||||||||
Sbjct: 901 acccggaacgggtgctcgac 882
>ISMipa1
Length = 1629
Score = 30.2 bits (15), Expect = 0.72
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 48 gaaccacccacggaa 62
|||||||||||||||
Sbjct: 269 gaaccacccacggaa 255
>ISBcen28
Length = 2311
Score = 30.2 bits (15), Expect = 0.72
Identities = 21/23 (91%)
Strand = Plus / Plus
Query: 94 ggcgctgctcggcccgctgctgc 116
||||||||||| || ||||||||
Sbjct: 2046 ggcgctgctcgaccggctgctgc 2068
>IS1538
Length = 2090
Score = 30.2 bits (15), Expect = 0.72
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 110 ctgctgcgcgacccg 124
|||||||||||||||
Sbjct: 387 ctgctgcgcgacccg 401
>TnAs2
Length = 8650
Score = 28.2 bits (14), Expect = 2.9
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 135 tcgacaaagcccgttcga 152
|||| |||||||||||||
Sbjct: 2138 tcgagaaagcccgttcga 2155
>ISAs19
Length = 1198
Score = 28.2 bits (14), Expect = 2.9
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 114 tgcgcgacccggagcggg 131
||||||||||| ||||||
Sbjct: 386 tgcgcgacccgcagcggg 369
>ISSen6
Length = 1818
Score = 28.2 bits (14), Expect = 2.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 18 gaacggcgtgcccc 31
||||||||||||||
Sbjct: 1686 gaacggcgtgcccc 1673
>ISSm4
Length = 9109
Score = 28.2 bits (14), Expect = 2.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 138 acaaagcccgttcg 151
||||||||||||||
Sbjct: 4642 acaaagcccgttcg 4629
>ISNml4
Length = 1462
Score = 28.2 bits (14), Expect = 2.9
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 100 gctcggcccgctgctgcg 117
|||||||||||| |||||
Sbjct: 104 gctcggcccgctcctgcg 87
>ISEc49
Length = 2766
Score = 28.2 bits (14), Expect = 2.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 138 acaaagcccgttcg 151
||||||||||||||
Sbjct: 537 acaaagcccgttcg 550
>ISFsp12
Length = 1730
Score = 28.2 bits (14), Expect = 2.9
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 102 tcggcccgctgctgcgcg 119
||||| ||||||||||||
Sbjct: 467 tcggcgcgctgctgcgcg 484
>ISPpu16
Length = 1677
Score = 28.2 bits (14), Expect = 2.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 40 cagcccgagaacca 53
||||||||||||||
Sbjct: 1191 cagcccgagaacca 1178
>ISAnsp11
Length = 1510
Score = 28.2 bits (14), Expect = 2.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 97 gctgctcggcccgc 110
||||||||||||||
Sbjct: 865 gctgctcggcccgc 878
>ISStma7
Length = 1223
Score = 28.2 bits (14), Expect = 2.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 109 gctgctgcgcgacc 122
||||||||||||||
Sbjct: 745 gctgctgcgcgacc 732
>ISTesp2
Length = 1397
Score = 28.2 bits (14), Expect = 2.9
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 52 cacccacggaagggtcag 69
|||||||||||| |||||
Sbjct: 25 cacccacggaagcgtcag 8
>IS609
Length = 1748
Score = 28.2 bits (14), Expect = 2.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 18 gaacggcgtgcccc 31
||||||||||||||
Sbjct: 1628 gaacggcgtgcccc 1615
>ISXc4
Length = 6938
Score = 28.2 bits (14), Expect = 2.9
Identities = 20/22 (90%)
Strand = Plus / Plus
Query: 99 tgctcggcccgctgctgcgcga 120
|||||| || ||||||||||||
Sbjct: 2737 tgctcgacctgctgctgcgcga 2758
>ISMt1
Length = 969
Score = 28.2 bits (14), Expect = 2.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 92 cgggcgctgctcgg 105
||||||||||||||
Sbjct: 390 cgggcgctgctcgg 403
>ISBugl1
Length = 1335
Score = 28.2 bits (14), Expect = 2.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 94 ggcgctgctcggcc 107
||||||||||||||
Sbjct: 1056 ggcgctgctcggcc 1069
>IS4811
Length = 5396
Score = 28.2 bits (14), Expect = 2.9
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 128 cgggtgctcgacaa 141
||||||||||||||
Sbjct: 3019 cgggtgctcgacaa 3006
>IS1417
Length = 1335
Score = 28.2 bits (14), Expect = 2.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 94 ggcgctgctcggcc 107
||||||||||||||
Sbjct: 1056 ggcgctgctcggcc 1069
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_431_length_130_cov_58.0755_ID_6030
(130 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISRsp13 | IS5 | Rhizhobium sp. | 30 | 0.61 | |
| ISPha2 | IS5 | Paracoccus halophilus | 30 | 0.61 | |
| ISRssp11 | IS5 | Roseovarius sp. | 30 | 0.61 | |
| ISFsp12 | ISAzo13 | Frankia sp. | 30 | 0.61 | |
| ISNagr11 | IS200/IS605 | IS1341 | Natronobacterium gregoryi | 28 | 2.4 |
| ISMfu2 | ISKra4 | ISKra4 | Myxococcus fulvus | 28 | 2.4 |
| ISTni2 | IS481 | Thioalkalivibrio nitratireducens | 28 | 2.4 | |
| ISStsp7 | IS5 | ISL2 | Streptomyces sp | 28 | 2.4 |
| ISStsp6 | IS5 | ISL2 | Streptomyces sp | 28 | 2.4 |
| ISMtsp8 | IS21 | Methylobacterium sp. | 28 | 2.4 | |
| ISMesp2 | IS1380 | Mesorhizobium sp. | 28 | 2.4 | |
| ISMex4 | IS1380 | Methylobacterium extorquens | 28 | 2.4 | |
| ISBmu3 | IS21 | Burkholderia multivorans | 28 | 2.4 | |
| IS1676 | IS1380 | - | Rhodococcus erythropolis | 28 | 2.4 |
| IS1372 | IS3 | IS51 | Streptomyces lividans | 28 | 2.4 |
| ISNpe31 | IS200/IS605 | IS1341 | Natrinema pellirubrum | 26 | 9.5 |
| ISHla21 | IS200/IS605 | IS605 | Halorubrum lacusprofundi | 26 | 9.5 |
| ISNaoc3 | IS200/IS605 | IS1341 | Natronococcus occultus | 26 | 9.5 |
| ISNma12 | IS200/IS605 | IS605 | Natrialba magadii | 26 | 9.5 |
| ISHwa28 | IS200/IS605 | IS1341 | Haloquadratum walsbyi | 26 | 9.5 |
| ISAs28 | IS21 | Aeromonas salmonicida | 26 | 9.5 | |
| ISAs27 | IS21 | Aeromonas salmonicida | 26 | 9.5 | |
| ISNamo17 | IS200/IS605 | IS605 | Natronomonas moolapensis | 26 | 9.5 |
| ISHbo4 | IS200/IS605 | IS605 | Halogeometricum borinquense | 26 | 9.5 |
| ISH35 | IS200/IS605 | Halobacterium salinarum | 26 | 9.5 | |
| ISNpe10 | IS200/IS605 | Natrinema pellirubrum | 26 | 9.5 | |
| ISMal1 | ISKra4 | ISAzba1 | Mesorhizobium alhagi | 26 | 9.5 |
| ISHth1 | ISH6 | Halococcus thailandensis | 26 | 9.5 | |
| ISCaac1 | IS5 | IS427 | Catenulispora acidiphila | 26 | 9.5 |
| ISStsp8 | IS5 | ISL2 | Streptomyces sp. | 26 | 9.5 |
| ISGeob2 | IS5 | ISL2 | Geodermatophilus obscurus | 26 | 9.5 |
| ISMafe1 | IS5 | IS5 | Mariprofundus ferrooxydans | 26 | 9.5 |
| ISArsp6 | Tn3 | Arthrobacter sp. | 26 | 9.5 | |
| ISStr1 | IS1380 | Salinispora tropica | 26 | 9.5 | |
| ISMex39 | IS21 | Methylobacterium extorquens | 26 | 9.5 | |
| ISKrh3 | IS481 | Kocuria rhizophila | 26 | 9.5 | |
| ISAzca2 | IS66 | Azorhizobium caulinodans | 26 | 9.5 | |
| IS1557 | ISL3 | Mycobacterium tuberculosis | 26 | 9.5 | |
| ISTesp3 | IS3 | IS51 | Terrabacter sp. | 26 | 9.5 |
| ISMva2 | IS481 | Mycobacterium vanbaalenii | 26 | 9.5 | |
| ISGbe2 | IS3 | IS2 | Granulibacter bethesdensis | 26 | 9.5 |
| ISMasp1 | IS1634 | Magnetococcus sp. | 26 | 9.5 | |
| IS1595 | IS1595 | IS1595 | Xanthomonas campestris | 26 | 9.5 |
| ISAli15 | IS66 | Azospirillum lipoferum | 26 | 9.5 | |
| IS2001 | ISL3 | - | Bifidobacterium lactis | 26 | 9.5 |
| IS1113 | IS256 | - | Xanthomonas oryzae | 26 | 9.5 |
>ISRsp13
Length = 1353
Score = 30.2 bits (15), Expect = 0.61
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 40 ccaccgccgagcccg 54
|||||||||||||||
Sbjct: 649 ccaccgccgagcccg 663
Score = 30.2 bits (15), Expect = 0.61
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 94 ccaccgccgagcccg 108
|||||||||||||||
Sbjct: 649 ccaccgccgagcccg 663
>ISPha2
Length = 1387
Score = 30.2 bits (15), Expect = 0.61
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 35 cgcgaccaccgccga 49
|||||||||||||||
Sbjct: 1282 cgcgaccaccgccga 1296
Score = 30.2 bits (15), Expect = 0.61
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 89 cgcgaccaccgccga 103
|||||||||||||||
Sbjct: 1282 cgcgaccaccgccga 1296
>ISRssp11
Length = 1356
Score = 30.2 bits (15), Expect = 0.61
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 40 ccaccgccgagcccg 54
|||||||||||||||
Sbjct: 651 ccaccgccgagcccg 665
Score = 30.2 bits (15), Expect = 0.61
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 94 ccaccgccgagcccg 108
|||||||||||||||
Sbjct: 651 ccaccgccgagcccg 665
>ISFsp12
Length = 1730
Score = 30.2 bits (15), Expect = 0.61
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 106 ccgctcccagcacca 120
|||||||||||||||
Sbjct: 157 ccgctcccagcacca 143
Score = 30.2 bits (15), Expect = 0.61
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 52 ccgctcccagcacca 66
|||||||||||||||
Sbjct: 157 ccgctcccagcacca 143
>ISNagr11
Length = 1732
Score = 28.2 bits (14), Expect = 2.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 28 cgacgaacgcgacc 41
||||||||||||||
Sbjct: 992 cgacgaacgcgacc 1005
Score = 28.2 bits (14), Expect = 2.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 82 cgacgaacgcgacc 95
||||||||||||||
Sbjct: 992 cgacgaacgcgacc 1005
>ISMfu2
Length = 1554
Score = 28.2 bits (14), Expect = 2.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 112 ccagcaccacctcc 125
||||||||||||||
Sbjct: 674 ccagcaccacctcc 661
>ISTni2
Length = 3451
Score = 28.2 bits (14), Expect = 2.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 24 accacgacgaacgc 37
||||||||||||||
Sbjct: 3234 accacgacgaacgc 3247
Score = 28.2 bits (14), Expect = 2.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 78 accacgacgaacgc 91
||||||||||||||
Sbjct: 3234 accacgacgaacgc 3247
>ISStsp7
Length = 976
Score = 28.2 bits (14), Expect = 2.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 74 gccgaccacgacga 87
||||||||||||||
Sbjct: 582 gccgaccacgacga 569
Score = 28.2 bits (14), Expect = 2.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 20 gccgaccacgacga 33
||||||||||||||
Sbjct: 582 gccgaccacgacga 569
>ISStsp6
Length = 1476
Score = 28.2 bits (14), Expect = 2.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 74 gccgaccacgacga 87
||||||||||||||
Sbjct: 1079 gccgaccacgacga 1066
Score = 28.2 bits (14), Expect = 2.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 20 gccgaccacgacga 33
||||||||||||||
Sbjct: 1079 gccgaccacgacga 1066
>ISMtsp8
Length = 2371
Score = 28.2 bits (14), Expect = 2.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 42 accgccgagcccgc 55
||||||||||||||
Sbjct: 2303 accgccgagcccgc 2316
Score = 28.2 bits (14), Expect = 2.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 96 accgccgagcccgc 109
||||||||||||||
Sbjct: 2303 accgccgagcccgc 2316
>ISMesp2
Length = 1618
Score = 28.2 bits (14), Expect = 2.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 24 accacgacgaacgc 37
||||||||||||||
Sbjct: 643 accacgacgaacgc 656
Score = 28.2 bits (14), Expect = 2.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 78 accacgacgaacgc 91
||||||||||||||
Sbjct: 643 accacgacgaacgc 656
>ISMex4
Length = 1615
Score = 28.2 bits (14), Expect = 2.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 24 accacgacgaacgc 37
||||||||||||||
Sbjct: 643 accacgacgaacgc 656
Score = 28.2 bits (14), Expect = 2.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 78 accacgacgaacgc 91
||||||||||||||
Sbjct: 643 accacgacgaacgc 656
>ISBmu3
Length = 2697
Score = 28.2 bits (14), Expect = 2.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 93 accaccgccgagcc 106
||||||||||||||
Sbjct: 226 accaccgccgagcc 213
Score = 28.2 bits (14), Expect = 2.4
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 39 accaccgccgagcc 52
||||||||||||||
Sbjct: 226 accaccgccgagcc 213
>IS1676
Length = 1693
Score = 28.2 bits (14), Expect = 2.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 43 ccgccgagcccgct 56
||||||||||||||
Sbjct: 1187 ccgccgagcccgct 1200
Score = 28.2 bits (14), Expect = 2.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 97 ccgccgagcccgct 110
||||||||||||||
Sbjct: 1187 ccgccgagcccgct 1200
>IS1372
Length = 1304
Score = 28.2 bits (14), Expect = 2.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 38 gaccaccgccgagc 51
||||||||||||||
Sbjct: 246 gaccaccgccgagc 259
Score = 28.2 bits (14), Expect = 2.4
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 92 gaccaccgccgagc 105
||||||||||||||
Sbjct: 246 gaccaccgccgagc 259
>ISNpe31
Length = 1667
Score = 26.3 bits (13), Expect = 9.5
Identities = 16/17 (94%)
Strand = Plus / Plus
Query: 25 ccacgacgaacgcgacc 41
||||||||||| |||||
Sbjct: 341 ccacgacgaacacgacc 357
Score = 26.3 bits (13), Expect = 9.5
Identities = 16/17 (94%)
Strand = Plus / Plus
Query: 79 ccacgacgaacgcgacc 95
||||||||||| |||||
Sbjct: 341 ccacgacgaacacgacc 357
>ISHla21
Length = 1835
Score = 26.3 bits (13), Expect = 9.5
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 20 gccgaccacgacg 32
|||||||||||||
Sbjct: 412 gccgaccacgacg 424
Score = 26.3 bits (13), Expect = 9.5
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 74 gccgaccacgacg 86
|||||||||||||
Sbjct: 412 gccgaccacgacg 424
>ISNaoc3
Length = 1633
Score = 26.3 bits (13), Expect = 9.5
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 29 gacgaacgcgacc 41
|||||||||||||
Sbjct: 956 gacgaacgcgacc 968
Score = 26.3 bits (13), Expect = 9.5
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 83 gacgaacgcgacc 95
|||||||||||||
Sbjct: 956 gacgaacgcgacc 968
>ISNma12
Length = 1923
Score = 26.3 bits (13), Expect = 9.5
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 20 gccgaccacgacg 32
|||||||||||||
Sbjct: 414 gccgaccacgacg 426
Score = 26.3 bits (13), Expect = 9.5
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 74 gccgaccacgacg 86
|||||||||||||
Sbjct: 414 gccgaccacgacg 426
>ISHwa28
Length = 1482
Score = 26.3 bits (13), Expect = 9.5
Identities = 16/17 (94%)
Strand = Plus / Plus
Query: 34 acgcgaccaccgccgag 50
|||||||||||| ||||
Sbjct: 639 acgcgaccaccgacgag 655
Score = 26.3 bits (13), Expect = 9.5
Identities = 16/17 (94%)
Strand = Plus / Plus
Query: 88 acgcgaccaccgccgag 104
|||||||||||| ||||
Sbjct: 639 acgcgaccaccgacgag 655
>ISAs28
Length = 2626
Score = 26.3 bits (13), Expect = 9.5
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 51 cccgctcccagca 63
|||||||||||||
Sbjct: 773 cccgctcccagca 785
Score = 26.3 bits (13), Expect = 9.5
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 105 cccgctcccagca 117
|||||||||||||
Sbjct: 773 cccgctcccagca 785
>ISAs27
Length = 2628
Score = 26.3 bits (13), Expect = 9.5
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 51 cccgctcccagca 63
|||||||||||||
Sbjct: 773 cccgctcccagca 785
Score = 26.3 bits (13), Expect = 9.5
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 105 cccgctcccagca 117
|||||||||||||
Sbjct: 773 cccgctcccagca 785
>ISNamo17
Length = 1836
Score = 26.3 bits (13), Expect = 9.5
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 20 gccgaccacgacg 32
|||||||||||||
Sbjct: 413 gccgaccacgacg 425
Score = 26.3 bits (13), Expect = 9.5
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 74 gccgaccacgacg 86
|||||||||||||
Sbjct: 413 gccgaccacgacg 425
>ISHbo4
Length = 1835
Score = 26.3 bits (13), Expect = 9.5
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 29 gacgaacgcgacc 41
|||||||||||||
Sbjct: 1218 gacgaacgcgacc 1230
Score = 26.3 bits (13), Expect = 9.5
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 83 gacgaacgcgacc 95
|||||||||||||
Sbjct: 1218 gacgaacgcgacc 1230
>ISH35
Length = 1836
Score = 26.3 bits (13), Expect = 9.5
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 20 gccgaccacgacg 32
|||||||||||||
Sbjct: 413 gccgaccacgacg 425
Score = 26.3 bits (13), Expect = 9.5
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 74 gccgaccacgacg 86
|||||||||||||
Sbjct: 413 gccgaccacgacg 425
>ISNpe10
Length = 1835
Score = 26.3 bits (13), Expect = 9.5
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 20 gccgaccacgacg 32
|||||||||||||
Sbjct: 413 gccgaccacgacg 425
Score = 26.3 bits (13), Expect = 9.5
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 74 gccgaccacgacg 86
|||||||||||||
Sbjct: 413 gccgaccacgacg 425
>ISMal1
Length = 2308
Score = 26.3 bits (13), Expect = 9.5
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 111 cccagcaccacct 123
|||||||||||||
Sbjct: 259 cccagcaccacct 247
>ISHth1
Length = 1445
Score = 26.3 bits (13), Expect = 9.5
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 23 gaccacgacgaac 35
|||||||||||||
Sbjct: 377 gaccacgacgaac 389
Score = 26.3 bits (13), Expect = 9.5
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 77 gaccacgacgaac 89
|||||||||||||
Sbjct: 377 gaccacgacgaac 389
>ISCaac1
Length = 996
Score = 26.3 bits (13), Expect = 9.5
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 43 ccgccgagcccgc 55
|||||||||||||
Sbjct: 915 ccgccgagcccgc 927
Score = 26.3 bits (13), Expect = 9.5
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 97 ccgccgagcccgc 109
|||||||||||||
Sbjct: 915 ccgccgagcccgc 927
>ISStsp8
Length = 881
Score = 26.3 bits (13), Expect = 9.5
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 74 gccgaccacgacg 86
|||||||||||||
Sbjct: 485 gccgaccacgacg 473
Score = 26.3 bits (13), Expect = 9.5
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 20 gccgaccacgacg 32
|||||||||||||
Sbjct: 485 gccgaccacgacg 473
>ISGeob2
Length = 968
Score = 26.3 bits (13), Expect = 9.5
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 39 accaccgccgagc 51
|||||||||||||
Sbjct: 933 accaccgccgagc 945
Score = 26.3 bits (13), Expect = 9.5
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 93 accaccgccgagc 105
|||||||||||||
Sbjct: 933 accaccgccgagc 945
>ISMafe1
Length = 1745
Score = 26.3 bits (13), Expect = 9.5
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 112 ccagcaccacctc 124
|||||||||||||
Sbjct: 1283 ccagcaccacctc 1271
>ISArsp6
Length = 26712
Score = 26.3 bits (13), Expect = 9.5
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 60 agcaccacgtccg 72
|||||||||||||
Sbjct: 21765 agcaccacgtccg 21753
Score = 26.3 bits (13), Expect = 9.5
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 6 agcaccacgtccg 18
|||||||||||||
Sbjct: 21765 agcaccacgtccg 21753
>ISStr1
Length = 1664
Score = 26.3 bits (13), Expect = 9.5
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 40 ccaccgccgagcc 52
|||||||||||||
Sbjct: 1353 ccaccgccgagcc 1365
Score = 26.3 bits (13), Expect = 9.5
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 94 ccaccgccgagcc 106
|||||||||||||
Sbjct: 1353 ccaccgccgagcc 1365
>ISMex39
Length = 2456
Score = 26.3 bits (13), Expect = 9.5
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 17 cgagccgaccacg 29
|||||||||||||
Sbjct: 1482 cgagccgaccacg 1494
Score = 26.3 bits (13), Expect = 9.5
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 71 cgagccgaccacg 83
|||||||||||||
Sbjct: 1482 cgagccgaccacg 1494
>ISKrh3
Length = 1113
Score = 26.3 bits (13), Expect = 9.5
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 70 ccgagccgaccac 82
|||||||||||||
Sbjct: 380 ccgagccgaccac 368
Score = 26.3 bits (13), Expect = 9.5
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 16 ccgagccgaccac 28
|||||||||||||
Sbjct: 380 ccgagccgaccac 368
>ISAzca2
Length = 2458
Score = 26.3 bits (13), Expect = 9.5
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 90 gcgaccaccgccg 102
|||||||||||||
Sbjct: 336 gcgaccaccgccg 324
Score = 26.3 bits (13), Expect = 9.5
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 36 gcgaccaccgccg 48
|||||||||||||
Sbjct: 336 gcgaccaccgccg 324
>IS1557
Length = 1509
Score = 26.3 bits (13), Expect = 9.5
Identities = 16/17 (94%)
Strand = Plus / Plus
Query: 7 gcaccacgtccgagccg 23
|||||||||||| ||||
Sbjct: 999 gcaccacgtccgggccg 1015
Score = 26.3 bits (13), Expect = 9.5
Identities = 16/17 (94%)
Strand = Plus / Plus
Query: 61 gcaccacgtccgagccg 77
|||||||||||| ||||
Sbjct: 999 gcaccacgtccgggccg 1015
>ISTesp3
Length = 1373
Score = 26.3 bits (13), Expect = 9.5
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 57 cccagcaccacgt 69
|||||||||||||
Sbjct: 53 cccagcaccacgt 41
Score = 26.3 bits (13), Expect = 9.5
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 3 cccagcaccacgt 15
|||||||||||||
Sbjct: 53 cccagcaccacgt 41
>ISMva2
Length = 1966
Score = 26.3 bits (13), Expect = 9.5
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 118 ccacctccgagcc 130
|||||||||||||
Sbjct: 1634 ccacctccgagcc 1646
>ISGbe2
Length = 1352
Score = 26.3 bits (13), Expect = 9.5
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 65 cacgtccgagccg 77
|||||||||||||
Sbjct: 960 cacgtccgagccg 948
Score = 26.3 bits (13), Expect = 9.5
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 11 cacgtccgagccg 23
|||||||||||||
Sbjct: 960 cacgtccgagccg 948
>ISMasp1
Length = 1907
Score = 26.3 bits (13), Expect = 9.5
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 35 cgcgaccaccgcc 47
|||||||||||||
Sbjct: 707 cgcgaccaccgcc 719
Score = 26.3 bits (13), Expect = 9.5
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 89 cgcgaccaccgcc 101
|||||||||||||
Sbjct: 707 cgcgaccaccgcc 719
>IS1595
Length = 1072
Score = 26.3 bits (13), Expect = 9.5
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 57 cccagcaccacgt 69
|||||||||||||
Sbjct: 852 cccagcaccacgt 840
Score = 26.3 bits (13), Expect = 9.5
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 3 cccagcaccacgt 15
|||||||||||||
Sbjct: 852 cccagcaccacgt 840
>ISAli15
Length = 2658
Score = 26.3 bits (13), Expect = 9.5
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 89 cgcgaccaccgcc 101
|||||||||||||
Sbjct: 209 cgcgaccaccgcc 197
Score = 26.3 bits (13), Expect = 9.5
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 35 cgcgaccaccgcc 47
|||||||||||||
Sbjct: 209 cgcgaccaccgcc 197
>IS2001
Length = 1406
Score = 26.3 bits (13), Expect = 9.5
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 79 ccacgacgaacgc 91
|||||||||||||
Sbjct: 274 ccacgacgaacgc 262
Score = 26.3 bits (13), Expect = 9.5
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 25 ccacgacgaacgc 37
|||||||||||||
Sbjct: 274 ccacgacgaacgc 262
>IS1113
Length = 1306
Score = 26.3 bits (13), Expect = 9.5
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 57 cccagcaccacgt 69
|||||||||||||
Sbjct: 624 cccagcaccacgt 612
Score = 26.3 bits (13), Expect = 9.5
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 3 cccagcaccacgt 15
|||||||||||||
Sbjct: 624 cccagcaccacgt 612
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_432_length_120_cov_91.6977_ID_6032
(120 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISNamo21 | IS200/IS605 | IS1341 | Natronomonas moolapensis | 28 | 2.2 |
| ISXau4 | IS66 | Xanthobacter autotrophicus | 28 | 2.2 | |
| ISStac1 | IS110 | IS1111 | Streptomyces aculeolatus | 28 | 2.2 |
| ISAcr1 | IS1595 | ISSod11 | Acidiphilium cryptum | 28 | 2.2 |
| ISGrh1 | ISNCY | ISDol1 | Gordonia rhizosphera | 26 | 8.7 |
| ISNha8 | IS5 | Nitrobacter hamburgensis | 26 | 8.7 | |
| ISNisp7 | IS5 | Nitrobacter sp. | 26 | 8.7 | |
| ISCce5 | IS66 | Clostridium cellulolyticum | 26 | 8.7 | |
| ISPfr5 | IS481 | Propionibacterium freudenreichii | 26 | 8.7 | |
| ISNml1 | IS1380 | Nakamurella multipartita | 26 | 8.7 | |
| ISMex11 | IS3 | IS407 | Methylobacterium extorquens | 26 | 8.7 |
| ISSba16 | IS30 | Shewanella baltica | 26 | 8.7 | |
| ISGur14 | IS701 | Geobacter uraniumreducens | 26 | 8.7 | |
| ISVch5 | IS5 | IS5 | Vibrio cholerae | 26 | 8.7 |
| IS1511 | IS256 | - | Mycobacterium gordonae | 26 | 8.7 |
| IS1408 | IS256 | - | Mycobacterium branderi | 26 | 8.7 |
| IS1407 | IS256 | - | Mycobacterium celatum | 26 | 8.7 |
| IS1081 | IS256 | - | Mycobacterium bovis | 26 | 8.7 |
>ISNamo21
Length = 1836
Score = 28.2 bits (14), Expect = 2.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 27 gggttcgacctcga 40
||||||||||||||
Sbjct: 1803 gggttcgacctcga 1816
Score = 28.2 bits (14), Expect = 2.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 78 gggttcgacctcga 91
||||||||||||||
Sbjct: 1803 gggttcgacctcga 1816
>ISXau4
Length = 2458
Score = 28.2 bits (14), Expect = 2.2
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 82 tcgacctcgatcggcgcc 99
||||||||||||| ||||
Sbjct: 429 tcgacctcgatcgccgcc 412
Score = 28.2 bits (14), Expect = 2.2
Identities = 17/18 (94%)
Strand = Plus / Minus
Query: 31 tcgacctcgatcggcgcc 48
||||||||||||| ||||
Sbjct: 429 tcgacctcgatcgccgcc 412
>ISStac1
Length = 1484
Score = 28.2 bits (14), Expect = 2.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 35 cctcgatcggcgcc 48
||||||||||||||
Sbjct: 464 cctcgatcggcgcc 477
Score = 28.2 bits (14), Expect = 2.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 86 cctcgatcggcgcc 99
||||||||||||||
Sbjct: 464 cctcgatcggcgcc 477
>ISAcr1
Length = 1080
Score = 28.2 bits (14), Expect = 2.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 23 gcgcgggttcgacc 36
||||||||||||||
Sbjct: 761 gcgcgggttcgacc 774
Score = 28.2 bits (14), Expect = 2.2
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 74 gcgcgggttcgacc 87
||||||||||||||
Sbjct: 761 gcgcgggttcgacc 774
>ISGrh1
Length = 1673
Score = 26.3 bits (13), Expect = 8.7
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 85 acctcgatcggcg 97
|||||||||||||
Sbjct: 282 acctcgatcggcg 270
Score = 26.3 bits (13), Expect = 8.7
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 34 acctcgatcggcg 46
|||||||||||||
Sbjct: 282 acctcgatcggcg 270
>ISNha8
Length = 1288
Score = 26.3 bits (13), Expect = 8.7
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 23 gcgcgggttcgac 35
|||||||||||||
Sbjct: 131 gcgcgggttcgac 143
Score = 26.3 bits (13), Expect = 8.7
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 74 gcgcgggttcgac 86
|||||||||||||
Sbjct: 131 gcgcgggttcgac 143
>ISNisp7
Length = 1276
Score = 26.3 bits (13), Expect = 8.7
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 23 gcgcgggttcgac 35
|||||||||||||
Sbjct: 130 gcgcgggttcgac 142
Score = 26.3 bits (13), Expect = 8.7
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 74 gcgcgggttcgac 86
|||||||||||||
Sbjct: 130 gcgcgggttcgac 142
>ISCce5
Length = 2496
Score = 26.3 bits (13), Expect = 8.7
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 99 cacttttcagcac 111
|||||||||||||
Sbjct: 842 cacttttcagcac 830
Score = 26.3 bits (13), Expect = 8.7
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 48 cacttttcagcac 60
|||||||||||||
Sbjct: 842 cacttttcagcac 830
>ISPfr5
Length = 1329
Score = 26.3 bits (13), Expect = 8.7
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 5 agcacgtgcgggt 17
|||||||||||||
Sbjct: 1037 agcacgtgcgggt 1049
Score = 26.3 bits (13), Expect = 8.7
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 56 agcacgtgcgggt 68
|||||||||||||
Sbjct: 1037 agcacgtgcgggt 1049
Score = 26.3 bits (13), Expect = 8.7
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 107 agcacgtgcgggt 119
|||||||||||||
Sbjct: 1037 agcacgtgcgggt 1049
>ISNml1
Length = 1636
Score = 26.3 bits (13), Expect = 8.7
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 36 ctcgatcggcgcc 48
|||||||||||||
Sbjct: 839 ctcgatcggcgcc 851
Score = 26.3 bits (13), Expect = 8.7
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 87 ctcgatcggcgcc 99
|||||||||||||
Sbjct: 839 ctcgatcggcgcc 851
>ISMex11
Length = 1227
Score = 26.3 bits (13), Expect = 8.7
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 82 tcgacctcgatcg 94
|||||||||||||
Sbjct: 803 tcgacctcgatcg 791
Score = 26.3 bits (13), Expect = 8.7
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 31 tcgacctcgatcg 43
|||||||||||||
Sbjct: 803 tcgacctcgatcg 791
>ISSba16
Length = 1078
Score = 26.3 bits (13), Expect = 8.7
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 98 ccacttttcagca 110
|||||||||||||
Sbjct: 67 ccacttttcagca 55
Score = 26.3 bits (13), Expect = 8.7
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 47 ccacttttcagca 59
|||||||||||||
Sbjct: 67 ccacttttcagca 55
>ISGur14
Length = 1529
Score = 26.3 bits (13), Expect = 8.7
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 94 ggcgccacttttc 106
|||||||||||||
Sbjct: 1374 ggcgccacttttc 1362
Score = 26.3 bits (13), Expect = 8.7
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 43 ggcgccacttttc 55
|||||||||||||
Sbjct: 1374 ggcgccacttttc 1362
>ISVch5
Length = 1197
Score = 26.3 bits (13), Expect = 8.7
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 62 tgcgggtttgtcg 74
|||||||||||||
Sbjct: 130 tgcgggtttgtcg 118
Score = 26.3 bits (13), Expect = 8.7
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 11 tgcgggtttgtcg 23
|||||||||||||
Sbjct: 130 tgcgggtttgtcg 118
>IS1511
Length = 1278
Score = 26.3 bits (13), Expect = 8.7
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 38 cgatcggcgccac 50
|||||||||||||
Sbjct: 782 cgatcggcgccac 794
Score = 26.3 bits (13), Expect = 8.7
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 89 cgatcggcgccac 101
|||||||||||||
Sbjct: 782 cgatcggcgccac 794
>IS1408
Length = 1325
Score = 26.3 bits (13), Expect = 8.7
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 38 cgatcggcgccac 50
|||||||||||||
Sbjct: 775 cgatcggcgccac 787
Score = 26.3 bits (13), Expect = 8.7
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 89 cgatcggcgccac 101
|||||||||||||
Sbjct: 775 cgatcggcgccac 787
>IS1407
Length = 1422
Score = 26.3 bits (13), Expect = 8.7
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 38 cgatcggcgccac 50
|||||||||||||
Sbjct: 812 cgatcggcgccac 824
Score = 26.3 bits (13), Expect = 8.7
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 89 cgatcggcgccac 101
|||||||||||||
Sbjct: 812 cgatcggcgccac 824
>IS1081
Length = 1435
Score = 26.3 bits (13), Expect = 8.7
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 38 cgatcggcgccac 50
|||||||||||||
Sbjct: 847 cgatcggcgccac 859
Score = 26.3 bits (13), Expect = 8.7
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 89 cgatcggcgccac 101
|||||||||||||
Sbjct: 847 cgatcggcgccac 859
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_433_length_114_cov_54.7027_ID_6034
(114 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISRsp13 | IS5 | Rhizhobium sp. | 30 | 0.52 | |
| ISGeob5 | IS5 | IS427 | Geodermatophilus obscurus | 30 | 0.52 |
| IS999 | IS3 | IS51 | Mycobacterium avium | 30 | 0.52 |
| ISBrsp7 | IS5 | Bradyrhizobium sp. | 28 | 2.1 | |
| ISPa33 | IS1380 | Pseudomonas aeruginosa | 28 | 2.1 | |
| ISCARN110 | IS91 | Metagenomic data from CARNOULES | 28 | 2.1 | |
| ISBcen28 | IS21 | Burkholderia cenocepacia | 28 | 2.1 | |
| ISMav5 | IS481 | Mycobacterium avium | 28 | 2.1 | |
| ISRle4 | IS3 | IS407 | Rhizobium leguminosarum | 28 | 2.1 |
| ISPpu7 | IS21 | - | Pseudomonas putida | 28 | 2.1 |
| ISBm2 | IS3 | IS407 | Brucella melitensis | 28 | 2.1 |
| IS1491 | IS21 | - | Pseudomonas alcaligenes | 28 | 2.1 |
| IS1141 | IS3 | IS3 | Mycobacterium intracellulare | 28 | 2.1 |
| ISKra2 | ISKra4 | ISKra4 | Ktedonobacter racemifer | 26 | 8.2 |
| ISPse1 | IS1182 | Paracoccus seriniphilus | 26 | 8.2 | |
| ISArsp6 | Tn3 | Arthrobacter sp. | 26 | 8.2 | |
| ISStr1 | IS1380 | Salinispora tropica | 26 | 8.2 | |
| ISGka1 | IS5 | IS5 | Geobacillus kaustophilus | 26 | 8.2 |
| ISAnsp9 | ISAs1 | Anaeromyxobacter sp. | 26 | 8.2 | |
| ISMdi16 | IS3 | IS407 | Methylobacterium dichloromethanicum | 26 | 8.2 |
| ISAzo30 | IS630 | Azoarcus sp. | 26 | 8.2 | |
| ISAzo12 | IS21 | Azoarcus sp. | 26 | 8.2 | |
| ISPa16 | IS5 | IS5 | Pseudomonas aeruginosa | 26 | 8.2 |
| ISMno1 | ISAs1 | Methylobacterium nodulans | 26 | 8.2 | |
| ISRosp2 | IS3 | IS407 | Roseobacter sp. | 26 | 8.2 |
| ISRm31 | IS701 | Sinorhizobium meliloti | 26 | 8.2 | |
| ISPpu18 | IS5 | IS5 | Pseudomonas putida | 26 | 8.2 |
| ISAzvi4 | IS110 | IS1111 | Azotobacter vinelandii | 26 | 8.2 |
| IS1650 | IS5 | IS427 | Streptomyces coelicolor | 26 | 8.2 |
| IS1394 | IS30 | - | Pseudomonas alcaligenes | 26 | 8.2 |
| IS1311 | IS256 | - | Mycobacterium avium | 26 | 8.2 |
| IS1245 | IS256 | - | Mycobacterium avium | 26 | 8.2 |
>ISRsp13
Length = 1353
Score = 30.2 bits (15), Expect = 0.52
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 20 tgttgcgccggatca 34
|||||||||||||||
Sbjct: 439 tgttgcgccggatca 453
Score = 30.2 bits (15), Expect = 0.52
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 71 tgttgcgccggatca 85
|||||||||||||||
Sbjct: 439 tgttgcgccggatca 453
>ISGeob5
Length = 903
Score = 30.2 bits (15), Expect = 0.52
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 3 ccccgccgcggctga 17
|||||||||||||||
Sbjct: 84 ccccgccgcggctga 98
Score = 30.2 bits (15), Expect = 0.52
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 54 ccccgccgcggctga 68
|||||||||||||||
Sbjct: 84 ccccgccgcggctga 98
>IS999
Length = 1347
Score = 30.2 bits (15), Expect = 0.52
Identities = 21/23 (91%)
Strand = Plus / Plus
Query: 45 gcaccgcaaccccgccgcggctg 67
|||||||||| |||||||||||
Sbjct: 758 gcaccgcaacttcgccgcggctg 780
>ISBrsp7
Length = 1292
Score = 28.2 bits (14), Expect = 2.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 24 gcgccggatcacgc 37
||||||||||||||
Sbjct: 841 gcgccggatcacgc 854
Score = 28.2 bits (14), Expect = 2.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 75 gcgccggatcacgc 88
||||||||||||||
Sbjct: 841 gcgccggatcacgc 854
>ISPa33
Length = 1561
Score = 28.2 bits (14), Expect = 2.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 80 ggatcacgccgatc 93
||||||||||||||
Sbjct: 265 ggatcacgccgatc 252
Score = 28.2 bits (14), Expect = 2.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 29 ggatcacgccgatc 42
||||||||||||||
Sbjct: 265 ggatcacgccgatc 252
>ISCARN110
Length = 2294
Score = 28.2 bits (14), Expect = 2.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 46 caccgcaaccccgc 59
||||||||||||||
Sbjct: 668 caccgcaaccccgc 681
Score = 28.2 bits (14), Expect = 2.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 97 caccgcaaccccgc 110
||||||||||||||
Sbjct: 668 caccgcaaccccgc 681
>ISBcen28
Length = 2311
Score = 28.2 bits (14), Expect = 2.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 77 gccggatcacgccg 90
||||||||||||||
Sbjct: 1055 gccggatcacgccg 1042
Score = 28.2 bits (14), Expect = 2.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 26 gccggatcacgccg 39
||||||||||||||
Sbjct: 1055 gccggatcacgccg 1042
>ISMav5
Length = 1357
Score = 28.2 bits (14), Expect = 2.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 85 acgccgatcccgca 98
||||||||||||||
Sbjct: 482 acgccgatcccgca 469
Score = 28.2 bits (14), Expect = 2.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 34 acgccgatcccgca 47
||||||||||||||
Sbjct: 482 acgccgatcccgca 469
>ISRle4
Length = 1272
Score = 28.2 bits (14), Expect = 2.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 43 ccgcaccgcaaccc 56
||||||||||||||
Sbjct: 1181 ccgcaccgcaaccc 1194
Score = 28.2 bits (14), Expect = 2.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 94 ccgcaccgcaaccc 107
||||||||||||||
Sbjct: 1181 ccgcaccgcaaccc 1194
>ISPpu7
Length = 2598
Score = 28.2 bits (14), Expect = 2.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 77 gccggatcacgccg 90
||||||||||||||
Sbjct: 1465 gccggatcacgccg 1452
Score = 28.2 bits (14), Expect = 2.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 26 gccggatcacgccg 39
||||||||||||||
Sbjct: 1465 gccggatcacgccg 1452
>ISBm2
Length = 1274
Score = 28.2 bits (14), Expect = 2.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 43 ccgcaccgcaaccc 56
||||||||||||||
Sbjct: 1182 ccgcaccgcaaccc 1195
Score = 28.2 bits (14), Expect = 2.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 94 ccgcaccgcaaccc 107
||||||||||||||
Sbjct: 1182 ccgcaccgcaaccc 1195
>IS1491
Length = 2481
Score = 28.2 bits (14), Expect = 2.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 77 gccggatcacgccg 90
||||||||||||||
Sbjct: 1395 gccggatcacgccg 1382
Score = 28.2 bits (14), Expect = 2.1
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 26 gccggatcacgccg 39
||||||||||||||
Sbjct: 1395 gccggatcacgccg 1382
>IS1141
Length = 1588
Score = 28.2 bits (14), Expect = 2.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 35 cgccgatcccgcac 48
||||||||||||||
Sbjct: 657 cgccgatcccgcac 670
Score = 28.2 bits (14), Expect = 2.1
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 86 cgccgatcccgcac 99
||||||||||||||
Sbjct: 657 cgccgatcccgcac 670
>ISKra2
Length = 1665
Score = 26.3 bits (13), Expect = 8.2
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 64 gctgagttgttgc 76
|||||||||||||
Sbjct: 128 gctgagttgttgc 116
Score = 26.3 bits (13), Expect = 8.2
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 13 gctgagttgttgc 25
|||||||||||||
Sbjct: 128 gctgagttgttgc 116
>ISPse1
Length = 1653
Score = 26.3 bits (13), Expect = 8.2
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 25 cgccggatcacgc 37
|||||||||||||
Sbjct: 1232 cgccggatcacgc 1244
Score = 26.3 bits (13), Expect = 8.2
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 76 cgccggatcacgc 88
|||||||||||||
Sbjct: 1232 cgccggatcacgc 1244
>ISArsp6
Length = 26712
Score = 26.3 bits (13), Expect = 8.2
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 102 caaccccgccgcg 114
|||||||||||||
Sbjct: 16253 caaccccgccgcg 16241
Score = 26.3 bits (13), Expect = 8.2
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 51 caaccccgccgcg 63
|||||||||||||
Sbjct: 16253 caaccccgccgcg 16241
>ISStr1
Length = 1664
Score = 26.3 bits (13), Expect = 8.2
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 99 ccgcaaccccgcc 111
|||||||||||||
Sbjct: 267 ccgcaaccccgcc 255
Score = 26.3 bits (13), Expect = 8.2
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 48 ccgcaaccccgcc 60
|||||||||||||
Sbjct: 267 ccgcaaccccgcc 255
>ISGka1
Length = 1537
Score = 26.3 bits (13), Expect = 8.2
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 102 caaccccgccgcg 114
|||||||||||||
Sbjct: 529 caaccccgccgcg 517
Score = 26.3 bits (13), Expect = 8.2
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 51 caaccccgccgcg 63
|||||||||||||
Sbjct: 529 caaccccgccgcg 517
>ISAnsp9
Length = 1704
Score = 26.3 bits (13), Expect = 8.2
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 83 tcacgccgatccc 95
|||||||||||||
Sbjct: 1691 tcacgccgatccc 1679
Score = 26.3 bits (13), Expect = 8.2
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 32 tcacgccgatccc 44
|||||||||||||
Sbjct: 1691 tcacgccgatccc 1679
>ISMdi16
Length = 1271
Score = 26.3 bits (13), Expect = 8.2
Identities = 16/17 (94%)
Strand = Plus / Plus
Query: 25 cgccggatcacgccgat 41
|||||||||||| ||||
Sbjct: 533 cgccggatcacggcgat 549
Score = 26.3 bits (13), Expect = 8.2
Identities = 16/17 (94%)
Strand = Plus / Plus
Query: 76 cgccggatcacgccgat 92
|||||||||||| ||||
Sbjct: 533 cgccggatcacggcgat 549
>ISAzo30
Length = 1100
Score = 26.3 bits (13), Expect = 8.2
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 76 cgccggatcacgc 88
|||||||||||||
Sbjct: 502 cgccggatcacgc 490
Score = 26.3 bits (13), Expect = 8.2
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 25 cgccggatcacgc 37
|||||||||||||
Sbjct: 502 cgccggatcacgc 490
>ISAzo12
Length = 3075
Score = 26.3 bits (13), Expect = 8.2
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 85 acgccgatcccgc 97
|||||||||||||
Sbjct: 41 acgccgatcccgc 29
Score = 26.3 bits (13), Expect = 8.2
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 34 acgccgatcccgc 46
|||||||||||||
Sbjct: 41 acgccgatcccgc 29
>ISPa16
Length = 1192
Score = 26.3 bits (13), Expect = 8.2
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 34 acgccgatcccgc 46
|||||||||||||
Sbjct: 38 acgccgatcccgc 50
Score = 26.3 bits (13), Expect = 8.2
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 85 acgccgatcccgc 97
|||||||||||||
Sbjct: 38 acgccgatcccgc 50
>ISMno1
Length = 1218
Score = 26.3 bits (13), Expect = 8.2
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 79 cggatcacgccga 91
|||||||||||||
Sbjct: 974 cggatcacgccga 962
Score = 26.3 bits (13), Expect = 8.2
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 28 cggatcacgccga 40
|||||||||||||
Sbjct: 974 cggatcacgccga 962
>ISRosp2
Length = 1254
Score = 26.3 bits (13), Expect = 8.2
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 82 atcacgccgatcc 94
|||||||||||||
Sbjct: 534 atcacgccgatcc 522
Score = 26.3 bits (13), Expect = 8.2
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 31 atcacgccgatcc 43
|||||||||||||
Sbjct: 534 atcacgccgatcc 522
>ISRm31
Length = 1426
Score = 26.3 bits (13), Expect = 8.2
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 73 ttgcgccggatca 85
|||||||||||||
Sbjct: 983 ttgcgccggatca 971
Score = 26.3 bits (13), Expect = 8.2
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 22 ttgcgccggatca 34
|||||||||||||
Sbjct: 983 ttgcgccggatca 971
>ISPpu18
Length = 1192
Score = 26.3 bits (13), Expect = 8.2
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 34 acgccgatcccgc 46
|||||||||||||
Sbjct: 38 acgccgatcccgc 50
Score = 26.3 bits (13), Expect = 8.2
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 85 acgccgatcccgc 97
|||||||||||||
Sbjct: 38 acgccgatcccgc 50
>ISAzvi4
Length = 1351
Score = 26.3 bits (13), Expect = 8.2
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 88 ccgatcccgcacc 100
|||||||||||||
Sbjct: 472 ccgatcccgcacc 460
Score = 26.3 bits (13), Expect = 8.2
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 37 ccgatcccgcacc 49
|||||||||||||
Sbjct: 472 ccgatcccgcacc 460
>IS1650
Length = 898
Score = 26.3 bits (13), Expect = 8.2
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 89 cgatcccgcaccg 101
|||||||||||||
Sbjct: 134 cgatcccgcaccg 122
Score = 26.3 bits (13), Expect = 8.2
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 38 cgatcccgcaccg 50
|||||||||||||
Sbjct: 134 cgatcccgcaccg 122
>IS1394
Length = 1100
Score = 26.3 bits (13), Expect = 8.2
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 72 gttgcgccggatc 84
|||||||||||||
Sbjct: 189 gttgcgccggatc 177
Score = 26.3 bits (13), Expect = 8.2
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 21 gttgcgccggatc 33
|||||||||||||
Sbjct: 189 gttgcgccggatc 177
>IS1311
Length = 1416
Score = 26.3 bits (13), Expect = 8.2
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 51 caaccccgccgcg 63
|||||||||||||
Sbjct: 1184 caaccccgccgcg 1196
Score = 26.3 bits (13), Expect = 8.2
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 102 caaccccgccgcg 114
|||||||||||||
Sbjct: 1184 caaccccgccgcg 1196
>IS1245
Length = 1414
Score = 26.3 bits (13), Expect = 8.2
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 51 caaccccgccgcg 63
|||||||||||||
Sbjct: 1186 caaccccgccgcg 1198
Score = 26.3 bits (13), Expect = 8.2
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 102 caaccccgccgcg 114
|||||||||||||
Sbjct: 1186 caaccccgccgcg 1198
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_434_length_111_cov_40.5_ID_6036
(111 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISStsp1 | ISAzo13 | Streptomyces sp. | 32 | 0.13 | |
| ISHwa20 | IS5 | Haloquadratum walsbyi | 30 | 0.51 | |
| ISNpe3 | IS630 | Natrinema pellirubrum | 28 | 2.0 | |
| ISPve1 | IS21 | Paracoccus versutus | 28 | 2.0 | |
| ISMno5 | ISL3 | Methylobacterium nodulans | 28 | 2.0 | |
| ISCARN81 | IS3 | IS3 | Metagenomic data from CARNOULES | 28 | 2.0 |
| IS881 | IS5 | IS5 | Ralstonia eutropha | 28 | 2.0 |
| IS999 | IS3 | IS51 | Mycobacterium avium | 28 | 2.0 |
| ISRsp13 | IS5 | Rhizhobium sp. | 26 | 7.9 | |
| ISHti2 | IS200/IS605 | IS1341 | Halorhabdus tiamatea | 26 | 7.9 |
| ISPsy30 | Tn3 | Pseudomonas syringae | 26 | 7.9 | |
| ISRssp11 | IS5 | Roseovarius sp. | 26 | 7.9 | |
| ISSac3 | ISNCY | ISDol1 | Syntrophus aciditrophicus | 26 | 7.9 |
| ISSac2 | IS5 | IS5 | Syntrophus aciditrophicus | 26 | 7.9 |
| ISMch8 | IS5 | IS5 | Methylobacterium chloromethanicum | 26 | 7.9 |
| ISCli1 | IS1380 | Corynebacterium lipophiloflavum | 26 | 7.9 | |
| ISCef7 | IS1380 | Corynebacterium efficiens | 26 | 7.9 | |
| ISMex11 | IS3 | IS407 | Methylobacterium extorquens | 26 | 7.9 |
| ISThsp21 | IS5 | IS427 | Thiomonas sp. | 26 | 7.9 |
| ISAli18 | ISL3 | Azospirillum lipoferum | 26 | 7.9 | |
| ISAli10 | IS66 | Azospirillum lipoferum | 26 | 7.9 | |
| ISRfsp1 | IS66 | ISBst12 | Roseiflexus sp. | 26 | 7.9 |
| ISMno1 | ISAs1 | Methylobacterium nodulans | 26 | 7.9 | |
| ISNisp3 | IS3 | IS407 | Nitrobacter sp. | 26 | 7.9 |
| ISH17 | IS6 | Haloarcula marismortui | 26 | 7.9 | |
| ISBrsp1 | IS3 | IS407 | Bradyrhizobium sp. | 26 | 7.9 |
| IS1474 | IS21 | - | Pseudomonas alcaligenes | 26 | 7.9 |
>ISStsp1
Length = 1694
Score = 32.2 bits (16), Expect = 0.13
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 4 tggggcgggtccggcg 19
||||||||||||||||
Sbjct: 266 tggggcgggtccggcg 281
Score = 32.2 bits (16), Expect = 0.13
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 55 tggggcgggtccggcg 70
||||||||||||||||
Sbjct: 266 tggggcgggtccggcg 281
>ISHwa20
Length = 1075
Score = 30.2 bits (15), Expect = 0.51
Identities = 21/23 (91%)
Strand = Plus / Plus
Query: 39 ttcgccccggcgaatgtggggcg 61
|||||||||||||| |||||||
Sbjct: 176 ttcgccccggcgaagatggggcg 198
Score = 28.2 bits (14), Expect = 2.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 90 ttcgccccggcgaa 103
||||||||||||||
Sbjct: 176 ttcgccccggcgaa 189
>ISNpe3
Length = 1055
Score = 28.2 bits (14), Expect = 2.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 21 ccgttcagccgccg 34
||||||||||||||
Sbjct: 483 ccgttcagccgccg 496
Score = 28.2 bits (14), Expect = 2.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 72 ccgttcagccgccg 85
||||||||||||||
Sbjct: 483 ccgttcagccgccg 496
>ISPve1
Length = 2503
Score = 28.2 bits (14), Expect = 2.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 28 gccgccgcaacttc 41
||||||||||||||
Sbjct: 845 gccgccgcaacttc 858
Score = 28.2 bits (14), Expect = 2.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 79 gccgccgcaacttc 92
||||||||||||||
Sbjct: 845 gccgccgcaacttc 858
Score = 26.3 bits (13), Expect = 7.9
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 88 acttcgccccggc 100
|||||||||||||
Sbjct: 1175 acttcgccccggc 1163
Score = 26.3 bits (13), Expect = 7.9
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 37 acttcgccccggc 49
|||||||||||||
Sbjct: 1175 acttcgccccggc 1163
>ISMno5
Length = 1728
Score = 28.2 bits (14), Expect = 2.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 58 ggcgggtccggcgc 71
||||||||||||||
Sbjct: 368 ggcgggtccggcgc 355
Score = 28.2 bits (14), Expect = 2.0
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 7 ggcgggtccggcgc 20
||||||||||||||
Sbjct: 368 ggcgggtccggcgc 355
>ISCARN81
Length = 1406
Score = 28.2 bits (14), Expect = 2.0
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 32 ccgcaacttcgccccggc 49
|||||||||||| |||||
Sbjct: 731 ccgcaacttcgctccggc 748
Score = 28.2 bits (14), Expect = 2.0
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 83 ccgcaacttcgccccggc 100
|||||||||||| |||||
Sbjct: 731 ccgcaacttcgctccggc 748
>IS881
Length = 3033
Score = 28.2 bits (14), Expect = 2.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 47 ggcgaatgtggggc 60
||||||||||||||
Sbjct: 2890 ggcgaatgtggggc 2903
Score = 28.2 bits (14), Expect = 2.0
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 98 ggcgaatgtggggc 111
||||||||||||||
Sbjct: 2890 ggcgaatgtggggc 2903
>IS999
Length = 1347
Score = 28.2 bits (14), Expect = 2.0
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 32 ccgcaacttcgccccggc 49
||||||||||||| ||||
Sbjct: 761 ccgcaacttcgccgcggc 778
Score = 28.2 bits (14), Expect = 2.0
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 83 ccgcaacttcgccccggc 100
||||||||||||| ||||
Sbjct: 761 ccgcaacttcgccgcggc 778
>ISRsp13
Length = 1353
Score = 26.3 bits (13), Expect = 7.9
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 53 tgtggggcgggtc 65
|||||||||||||
Sbjct: 683 tgtggggcgggtc 671
Score = 26.3 bits (13), Expect = 7.9
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 2 tgtggggcgggtc 14
|||||||||||||
Sbjct: 683 tgtggggcgggtc 671
>ISHti2
Length = 1616
Score = 26.3 bits (13), Expect = 7.9
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 58 ggcgggtccggcg 70
|||||||||||||
Sbjct: 1035 ggcgggtccggcg 1023
Score = 26.3 bits (13), Expect = 7.9
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 7 ggcgggtccggcg 19
|||||||||||||
Sbjct: 1035 ggcgggtccggcg 1023
>ISPsy30
Length = 5167
Score = 26.3 bits (13), Expect = 7.9
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 39 ttcgccccggcga 51
|||||||||||||
Sbjct: 1689 ttcgccccggcga 1701
Score = 26.3 bits (13), Expect = 7.9
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 90 ttcgccccggcga 102
|||||||||||||
Sbjct: 1689 ttcgccccggcga 1701
>ISRssp11
Length = 1356
Score = 26.3 bits (13), Expect = 7.9
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 53 tgtggggcgggtc 65
|||||||||||||
Sbjct: 685 tgtggggcgggtc 673
Score = 26.3 bits (13), Expect = 7.9
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 2 tgtggggcgggtc 14
|||||||||||||
Sbjct: 685 tgtggggcgggtc 673
>ISSac3
Length = 1595
Score = 26.3 bits (13), Expect = 7.9
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 80 ccgccgcaacttc 92
|||||||||||||
Sbjct: 1159 ccgccgcaacttc 1147
Score = 26.3 bits (13), Expect = 7.9
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 29 ccgccgcaacttc 41
|||||||||||||
Sbjct: 1159 ccgccgcaacttc 1147
>ISSac2
Length = 1595
Score = 26.3 bits (13), Expect = 7.9
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 80 ccgccgcaacttc 92
|||||||||||||
Sbjct: 1159 ccgccgcaacttc 1147
Score = 26.3 bits (13), Expect = 7.9
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 29 ccgccgcaacttc 41
|||||||||||||
Sbjct: 1159 ccgccgcaacttc 1147
>ISMch8
Length = 1494
Score = 26.3 bits (13), Expect = 7.9
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 8 gcgggtccggcgc 20
|||||||||||||
Sbjct: 134 gcgggtccggcgc 146
Score = 26.3 bits (13), Expect = 7.9
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 59 gcgggtccggcgc 71
|||||||||||||
Sbjct: 134 gcgggtccggcgc 146
>ISCli1
Length = 1687
Score = 26.3 bits (13), Expect = 7.9
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 89 cttcgccccggcg 101
|||||||||||||
Sbjct: 294 cttcgccccggcg 282
Score = 26.3 bits (13), Expect = 7.9
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 38 cttcgccccggcg 50
|||||||||||||
Sbjct: 294 cttcgccccggcg 282
>ISCef7
Length = 1687
Score = 26.3 bits (13), Expect = 7.9
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 89 cttcgccccggcg 101
|||||||||||||
Sbjct: 294 cttcgccccggcg 282
Score = 26.3 bits (13), Expect = 7.9
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 38 cttcgccccggcg 50
|||||||||||||
Sbjct: 294 cttcgccccggcg 282
>ISMex11
Length = 1227
Score = 26.3 bits (13), Expect = 7.9
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 75 ttcagccgccgca 87
|||||||||||||
Sbjct: 249 ttcagccgccgca 237
Score = 26.3 bits (13), Expect = 7.9
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 24 ttcagccgccgca 36
|||||||||||||
Sbjct: 249 ttcagccgccgca 237
>ISThsp21
Length = 932
Score = 26.3 bits (13), Expect = 7.9
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 25 tcagccgccgcaa 37
|||||||||||||
Sbjct: 711 tcagccgccgcaa 723
Score = 26.3 bits (13), Expect = 7.9
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 76 tcagccgccgcaa 88
|||||||||||||
Sbjct: 711 tcagccgccgcaa 723
>ISAli18
Length = 1752
Score = 26.3 bits (13), Expect = 7.9
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 8 gcgggtccggcgc 20
|||||||||||||
Sbjct: 384 gcgggtccggcgc 396
Score = 26.3 bits (13), Expect = 7.9
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 59 gcgggtccggcgc 71
|||||||||||||
Sbjct: 384 gcgggtccggcgc 396
>ISAli10
Length = 2584
Score = 26.3 bits (13), Expect = 7.9
Identities = 16/17 (94%)
Strand = Plus / Minus
Query: 72 ccgttcagccgccgcaa 88
||||| |||||||||||
Sbjct: 907 ccgttgagccgccgcaa 891
Score = 26.3 bits (13), Expect = 7.9
Identities = 16/17 (94%)
Strand = Plus / Minus
Query: 21 ccgttcagccgccgcaa 37
||||| |||||||||||
Sbjct: 907 ccgttgagccgccgcaa 891
>ISRfsp1
Length = 1503
Score = 26.3 bits (13), Expect = 7.9
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 44 cccggcgaatgtg 56
|||||||||||||
Sbjct: 544 cccggcgaatgtg 556
Score = 26.3 bits (13), Expect = 7.9
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 95 cccggcgaatgtg 107
|||||||||||||
Sbjct: 544 cccggcgaatgtg 556
Score = 26.3 bits (13), Expect = 7.9
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 75 ttcagccgccgca 87
|||||||||||||
Sbjct: 1239 ttcagccgccgca 1227
Score = 26.3 bits (13), Expect = 7.9
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 24 ttcagccgccgca 36
|||||||||||||
Sbjct: 1239 ttcagccgccgca 1227
>ISMno1
Length = 1218
Score = 26.3 bits (13), Expect = 7.9
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 33 cgcaacttcgccc 45
|||||||||||||
Sbjct: 1066 cgcaacttcgccc 1078
Score = 26.3 bits (13), Expect = 7.9
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 84 cgcaacttcgccc 96
|||||||||||||
Sbjct: 1066 cgcaacttcgccc 1078
>ISNisp3
Length = 1234
Score = 26.3 bits (13), Expect = 7.9
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 75 ttcagccgccgca 87
|||||||||||||
Sbjct: 251 ttcagccgccgca 239
Score = 26.3 bits (13), Expect = 7.9
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 24 ttcagccgccgca 36
|||||||||||||
Sbjct: 251 ttcagccgccgca 239
>ISH17
Length = 745
Score = 26.3 bits (13), Expect = 7.9
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 23 gttcagccgccgc 35
|||||||||||||
Sbjct: 401 gttcagccgccgc 413
Score = 26.3 bits (13), Expect = 7.9
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 74 gttcagccgccgc 86
|||||||||||||
Sbjct: 401 gttcagccgccgc 413
>ISBrsp1
Length = 1242
Score = 26.3 bits (13), Expect = 7.9
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 75 ttcagccgccgca 87
|||||||||||||
Sbjct: 245 ttcagccgccgca 233
Score = 26.3 bits (13), Expect = 7.9
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 24 ttcagccgccgca 36
|||||||||||||
Sbjct: 245 ttcagccgccgca 233
>IS1474
Length = 2633
Score = 26.3 bits (13), Expect = 7.9
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 15 cggcgcccgttca 27
|||||||||||||
Sbjct: 1115 cggcgcccgttca 1127
Score = 26.3 bits (13), Expect = 7.9
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 66 cggcgcccgttca 78
|||||||||||||
Sbjct: 1115 cggcgcccgttca 1127
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_435_length_107_cov_50.1667_ID_6038
(107 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISFsp13 | ISAzo13 | Frankia sp. | 28 | 1.9 | |
| ISPpu15 | IS66 | Pseudomonas putida | 28 | 1.9 | |
| ISUnCu3 | IS21 | Uncultured bacterium | 26 | 7.6 | |
| ISRasp1 | IS3 | IS3 | Ralstonia sp. | 26 | 7.6 |
| ISPpu7 | IS21 | - | Pseudomonas putida | 26 | 7.6 |
>ISFsp13
Length = 1724
Score = 28.2 bits (14), Expect = 1.9
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 28 taccactgaccccccacg 45
||||||||||| ||||||
Sbjct: 1208 taccactgaccgcccacg 1225
Score = 28.2 bits (14), Expect = 1.9
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 58 taccactgaccccccacg 75
||||||||||| ||||||
Sbjct: 1208 taccactgaccgcccacg 1225
>ISPpu15
Length = 2041
Score = 28.2 bits (14), Expect = 1.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 18 agtcagtgggtacc 31
||||||||||||||
Sbjct: 674 agtcagtgggtacc 687
Score = 28.2 bits (14), Expect = 1.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 48 agtcagtgggtacc 61
||||||||||||||
Sbjct: 674 agtcagtgggtacc 687
>ISUnCu3
Length = 2596
Score = 26.3 bits (13), Expect = 7.6
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 28 taccactgacccc 40
|||||||||||||
Sbjct: 1710 taccactgacccc 1722
Score = 26.3 bits (13), Expect = 7.6
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 58 taccactgacccc 70
|||||||||||||
Sbjct: 1710 taccactgacccc 1722
>ISRasp1
Length = 1275
Score = 26.3 bits (13), Expect = 7.6
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 21 cagtgggtaccac 33
|||||||||||||
Sbjct: 431 cagtgggtaccac 443
Score = 26.3 bits (13), Expect = 7.6
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 51 cagtgggtaccac 63
|||||||||||||
Sbjct: 431 cagtgggtaccac 443
>ISPpu7
Length = 2598
Score = 26.3 bits (13), Expect = 7.6
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 28 taccactgacccc 40
|||||||||||||
Sbjct: 1711 taccactgacccc 1723
Score = 26.3 bits (13), Expect = 7.6
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 58 taccactgacccc 70
|||||||||||||
Sbjct: 1711 taccactgacccc 1723
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_436_length_107_cov_97.8333_ID_6040
(107 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| TnXo19 | Tn3 | Xanthomonas oryzae | 28 | 1.9 | |
| ISHsa1 | ISH6 | Halococcus salifodinae | 26 | 7.6 | |
| ISVsp4 | IS66 | Verrucomicrobium spinosum | 26 | 7.6 | |
| ISAzo28 | IS110 | Azoarcus sp. | 26 | 7.6 | |
| ISHma5 | ISH6 | Haloarcula marismortui | 26 | 7.6 |
>TnXo19
Length = 18767
Score = 28.2 bits (14), Expect = 1.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 5 tcgtgccgcccaac 18
||||||||||||||
Sbjct: 8119 tcgtgccgcccaac 8132
Score = 28.2 bits (14), Expect = 1.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 38 tcgtgccgcccaac 51
||||||||||||||
Sbjct: 8119 tcgtgccgcccaac 8132
Score = 28.2 bits (14), Expect = 1.9
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 71 tcgtgccgcccaac 84
||||||||||||||
Sbjct: 8119 tcgtgccgcccaac 8132
>ISHsa1
Length = 1467
Score = 26.3 bits (13), Expect = 7.6
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 66 gcacttcgtgccg 78
|||||||||||||
Sbjct: 677 gcacttcgtgccg 665
Score = 26.3 bits (13), Expect = 7.6
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 33 gcacttcgtgccg 45
|||||||||||||
Sbjct: 677 gcacttcgtgccg 665
>ISVsp4
Length = 2518
Score = 26.3 bits (13), Expect = 7.6
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 70 ttcgtgccgccca 82
|||||||||||||
Sbjct: 1237 ttcgtgccgccca 1225
Score = 26.3 bits (13), Expect = 7.6
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 37 ttcgtgccgccca 49
|||||||||||||
Sbjct: 1237 ttcgtgccgccca 1225
Score = 26.3 bits (13), Expect = 7.6
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 4 ttcgtgccgccca 16
|||||||||||||
Sbjct: 1237 ttcgtgccgccca 1225
>ISAzo28
Length = 1486
Score = 26.3 bits (13), Expect = 7.6
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 3 cttcgtgccgccc 15
|||||||||||||
Sbjct: 593 cttcgtgccgccc 605
Score = 26.3 bits (13), Expect = 7.6
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 36 cttcgtgccgccc 48
|||||||||||||
Sbjct: 593 cttcgtgccgccc 605
Score = 26.3 bits (13), Expect = 7.6
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 69 cttcgtgccgccc 81
|||||||||||||
Sbjct: 593 cttcgtgccgccc 605
>ISHma5
Length = 1449
Score = 26.3 bits (13), Expect = 7.6
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 66 gcacttcgtgccg 78
|||||||||||||
Sbjct: 659 gcacttcgtgccg 647
Score = 26.3 bits (13), Expect = 7.6
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 33 gcacttcgtgccg 45
|||||||||||||
Sbjct: 659 gcacttcgtgccg 647
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_437_length_107_cov_1.96667_ID_6042
(107 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
***** No hits found ******
BLAST Search Results
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_438_length_104_cov_49.8519_ID_6044
(104 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISEli1 | IS3 | IS407 | Erythrobacter litoralis | 30 | 0.47 |
| ISStau8 | IS1182 | Stigmatella aurantiaca | 26 | 7.3 | |
| ISSysp3 | IS4 | IS50 | Synechococcus sp. | 26 | 7.3 |
| ISBlo5 | IS256 | Bifidobacterium longum | 26 | 7.3 | |
| IS1016P | IS1595 | IS1016 | Pasteurella multocida | 26 | 7.3 |
>ISEli1
Length = 1270
Score = 30.2 bits (15), Expect = 0.47
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 65 gagcagttcgtcccg 79
|||||||||||||||
Sbjct: 1013 gagcagttcgtcccg 999
Score = 30.2 bits (15), Expect = 0.47
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 38 gagcagttcgtcccg 52
|||||||||||||||
Sbjct: 1013 gagcagttcgtcccg 999
Score = 30.2 bits (15), Expect = 0.47
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 11 gagcagttcgtcccg 25
|||||||||||||||
Sbjct: 1013 gagcagttcgtcccg 999
Score = 26.3 bits (13), Expect = 7.3
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 92 gagcagttcgtcc 104
|||||||||||||
Sbjct: 1013 gagcagttcgtcc 1001
>ISStau8
Length = 1749
Score = 26.3 bits (13), Expect = 7.3
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 9 aagagcagttcgt 21
|||||||||||||
Sbjct: 166 aagagcagttcgt 178
Score = 26.3 bits (13), Expect = 7.3
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 36 aagagcagttcgt 48
|||||||||||||
Sbjct: 166 aagagcagttcgt 178
Score = 26.3 bits (13), Expect = 7.3
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 63 aagagcagttcgt 75
|||||||||||||
Sbjct: 166 aagagcagttcgt 178
Score = 26.3 bits (13), Expect = 7.3
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 90 aagagcagttcgt 102
|||||||||||||
Sbjct: 166 aagagcagttcgt 178
>ISSysp3
Length = 1485
Score = 26.3 bits (13), Expect = 7.3
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 12 agcagttcgtccc 24
|||||||||||||
Sbjct: 498 agcagttcgtccc 510
Score = 26.3 bits (13), Expect = 7.3
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 39 agcagttcgtccc 51
|||||||||||||
Sbjct: 498 agcagttcgtccc 510
Score = 26.3 bits (13), Expect = 7.3
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 66 agcagttcgtccc 78
|||||||||||||
Sbjct: 498 agcagttcgtccc 510
>ISBlo5
Length = 1366
Score = 26.3 bits (13), Expect = 7.3
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 11 gagcagttcgtcc 23
|||||||||||||
Sbjct: 746 gagcagttcgtcc 758
Score = 26.3 bits (13), Expect = 7.3
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 38 gagcagttcgtcc 50
|||||||||||||
Sbjct: 746 gagcagttcgtcc 758
Score = 26.3 bits (13), Expect = 7.3
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 65 gagcagttcgtcc 77
|||||||||||||
Sbjct: 746 gagcagttcgtcc 758
Score = 26.3 bits (13), Expect = 7.3
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 92 gagcagttcgtcc 104
|||||||||||||
Sbjct: 746 gagcagttcgtcc 758
>IS1016P
Length = 709
Score = 26.3 bits (13), Expect = 7.3
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 6 cgaaagagcagtt 18
|||||||||||||
Sbjct: 646 cgaaagagcagtt 658
Score = 26.3 bits (13), Expect = 7.3
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 33 cgaaagagcagtt 45
|||||||||||||
Sbjct: 646 cgaaagagcagtt 658
Score = 26.3 bits (13), Expect = 7.3
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 60 cgaaagagcagtt 72
|||||||||||||
Sbjct: 646 cgaaagagcagtt 658
Score = 26.3 bits (13), Expect = 7.3
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 87 cgaaagagcagtt 99
|||||||||||||
Sbjct: 646 cgaaagagcagtt 658
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_439_length_101_cov_210.708_ID_6046
(101 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISAfe4 | IS66 | Acidithiobacillus ferrooxidans | 28 | 1.8 | |
| ISPpu15 | IS66 | Pseudomonas putida | 28 | 1.8 | |
| ISPa39 | IS3 | IS407 | Pseudomonas aeruginosa | 26 | 7.1 |
| ISUnCu2 | IS5 | IS5 | Uncultured bacterium | 26 | 7.1 |
| ISCap1 | ISAzo13 | Candidatus Accumulibacter phosphatis | 26 | 7.1 | |
| ISThsp10 | IS21 | Thiomonas sp. | 26 | 7.1 | |
| ISRasp1 | IS3 | IS3 | Ralstonia sp. | 26 | 7.1 |
| ISBmu3 | IS21 | Burkholderia multivorans | 26 | 7.1 | |
| ISDra1 | IS4 | IS10 | Deinococcus radiodurans | 26 | 7.1 |
>ISAfe4
Length = 2477
Score = 28.2 bits (14), Expect = 1.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 73 ctgacccagccagc 86
||||||||||||||
Sbjct: 1573 ctgacccagccagc 1560
Score = 28.2 bits (14), Expect = 1.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 43 ctgacccagccagc 56
||||||||||||||
Sbjct: 1573 ctgacccagccagc 1560
Score = 28.2 bits (14), Expect = 1.8
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 13 ctgacccagccagc 26
||||||||||||||
Sbjct: 1573 ctgacccagccagc 1560
>ISPpu15
Length = 2041
Score = 28.2 bits (14), Expect = 1.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 28 agtcagtgggtacc 41
||||||||||||||
Sbjct: 674 agtcagtgggtacc 687
Score = 28.2 bits (14), Expect = 1.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 58 agtcagtgggtacc 71
||||||||||||||
Sbjct: 674 agtcagtgggtacc 687
Score = 28.2 bits (14), Expect = 1.8
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 88 agtcagtgggtacc 101
||||||||||||||
Sbjct: 674 agtcagtgggtacc 687
>ISPa39
Length = 1254
Score = 26.3 bits (13), Expect = 7.1
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 13 ctgacccagccag 25
|||||||||||||
Sbjct: 932 ctgacccagccag 944
Score = 26.3 bits (13), Expect = 7.1
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 43 ctgacccagccag 55
|||||||||||||
Sbjct: 932 ctgacccagccag 944
Score = 26.3 bits (13), Expect = 7.1
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 73 ctgacccagccag 85
|||||||||||||
Sbjct: 932 ctgacccagccag 944
>ISUnCu2
Length = 1491
Score = 26.3 bits (13), Expect = 7.1
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 81 gccagcgagtcag 93
|||||||||||||
Sbjct: 455 gccagcgagtcag 443
Score = 26.3 bits (13), Expect = 7.1
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 51 gccagcgagtcag 63
|||||||||||||
Sbjct: 455 gccagcgagtcag 443
Score = 26.3 bits (13), Expect = 7.1
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 21 gccagcgagtcag 33
|||||||||||||
Sbjct: 455 gccagcgagtcag 443
>ISCap1
Length = 1311
Score = 26.3 bits (13), Expect = 7.1
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 71 cactgacccagcc 83
|||||||||||||
Sbjct: 787 cactgacccagcc 775
Score = 26.3 bits (13), Expect = 7.1
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 41 cactgacccagcc 53
|||||||||||||
Sbjct: 787 cactgacccagcc 775
Score = 26.3 bits (13), Expect = 7.1
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 11 cactgacccagcc 23
|||||||||||||
Sbjct: 787 cactgacccagcc 775
>ISThsp10
Length = 2501
Score = 26.3 bits (13), Expect = 7.1
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 78 ccagccagcgagt 90
|||||||||||||
Sbjct: 309 ccagccagcgagt 297
Score = 26.3 bits (13), Expect = 7.1
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 48 ccagccagcgagt 60
|||||||||||||
Sbjct: 309 ccagccagcgagt 297
Score = 26.3 bits (13), Expect = 7.1
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 18 ccagccagcgagt 30
|||||||||||||
Sbjct: 309 ccagccagcgagt 297
>ISRasp1
Length = 1275
Score = 26.3 bits (13), Expect = 7.1
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 1 cagtgggtaccac 13
|||||||||||||
Sbjct: 431 cagtgggtaccac 443
Score = 26.3 bits (13), Expect = 7.1
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 31 cagtgggtaccac 43
|||||||||||||
Sbjct: 431 cagtgggtaccac 443
Score = 26.3 bits (13), Expect = 7.1
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 61 cagtgggtaccac 73
|||||||||||||
Sbjct: 431 cagtgggtaccac 443
>ISBmu3
Length = 2697
Score = 26.3 bits (13), Expect = 7.1
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 8 taccactgaccca 20
|||||||||||||
Sbjct: 1826 taccactgaccca 1838
Score = 26.3 bits (13), Expect = 7.1
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 38 taccactgaccca 50
|||||||||||||
Sbjct: 1826 taccactgaccca 1838
Score = 26.3 bits (13), Expect = 7.1
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 68 taccactgaccca 80
|||||||||||||
Sbjct: 1826 taccactgaccca 1838
>ISDra1
Length = 1207
Score = 26.3 bits (13), Expect = 7.1
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 75 gacccagccagcg 87
|||||||||||||
Sbjct: 589 gacccagccagcg 577
Score = 26.3 bits (13), Expect = 7.1
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 45 gacccagccagcg 57
|||||||||||||
Sbjct: 589 gacccagccagcg 577
Score = 26.3 bits (13), Expect = 7.1
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 15 gacccagccagcg 27
|||||||||||||
Sbjct: 589 gacccagccagcg 577
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_440_length_92_cov_58_ID_6048
(92 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
***** No hits found ******
BLAST Search Results
BLASTN 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NODE_441_length_85_cov_42_ID_6050
(85 letters)
Database: IS nucleotide Database
4512 sequences; 6,704,636 total letters
Searching..................................................done
| Sequences producing significant alignments | IS Family | Group | Origin | Score (bits) | E (value) |
| ISCte5 | IS5 | Comamonas testosteroni | 34 | 0.024 | |
| ISDisp1 | IS5 | Diaphorobacter sp. | 32 | 0.093 | |
| ISAar29 | IS110 | Arthrobacter arilaitensis | 30 | 0.37 | |
| IS1601 | IS256 | - | Mycobacterium avium | 30 | 0.37 |
| ISGrh1 | ISNCY | ISDol1 | Gordonia rhizosphera | 28 | 1.5 |
| ISMdi10 | IS110 | IS1111 | Methylobacterium dichloromethanicum | 28 | 1.5 |
| ISThsp2 | IS21 | Thiomonas sp. | 28 | 1.5 | |
| ISGdi8 | IS256 | Gluconacetobacter diazotrophicus | 28 | 1.5 | |
| ISAli6 | IS256 | Azospirillum lipoferum | 28 | 1.5 | |
| ISMca1 | IS5 | Methylococcus capsulatus | 28 | 1.5 | |
| ISAisp2 | IS3 | IS51 | Acidovorax sp. | 28 | 1.5 |
| ISMyin1 | ISNCY | ISDol1 | Mycobacterium indicus | 26 | 5.8 |
| ISNpe31 | IS200/IS605 | IS1341 | Natrinema pellirubrum | 26 | 5.8 |
| ISHasp1 | IS200/IS605 | IS1341 | Halobacterium sp. | 26 | 5.8 |
| ISSal1 | IS66 | Shewanella algae | 26 | 5.8 | |
| ISHmu5 | IS200/IS605 | Halomicrobium mukohataei | 26 | 5.8 | |
| ISCap2 | IS5 | IS903 | Candidatus Accumulibacter phosphatis | 26 | 5.8 |
| ISNph5 | IS200/IS605 | Natronomonas pharaonis | 26 | 5.8 | |
| ISMno17 | IS1182 | Methylobacterium nodulans | 26 | 5.8 | |
| ISThsp19 | IS21 | Thiomonas sp. | 26 | 5.8 | |
| ISCARN16 | IS21 | Metagenomic data from CARNOULES | 26 | 5.8 | |
| ISCARN11 | IS1595 | ISSod11 | Metagenomic data from CARNOULES | 26 | 5.8 |
| ISBcen21 | IS3 | IS51 | Burkholderia cenocepacia | 26 | 5.8 |
| ISRsp6 | IS4 | IS4Sa | Rhizobium sp. | 26 | 5.8 |
| ISSfl3 | IS66 | - | Shigella flexneri | 26 | 5.8 |
| IS1600 | IS21 | - | Ralstonia eutropha | 26 | 5.8 |
| IS1419 | IS481 | - | Burkholderia glumae | 26 | 5.8 |
| IS1113 | IS256 | - | Xanthomonas oryzae | 26 | 5.8 |
>ISCte5
Length = 1321
Score = 34.2 bits (17), Expect = 0.024
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 8 acgcccgccgtggccga 24
|||||||||||||||||
Sbjct: 228 acgcccgccgtggccga 244
Score = 34.2 bits (17), Expect = 0.024
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 35 acgcccgccgtggccga 51
|||||||||||||||||
Sbjct: 228 acgcccgccgtggccga 244
Score = 34.2 bits (17), Expect = 0.024
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 62 acgcccgccgtggccga 78
|||||||||||||||||
Sbjct: 228 acgcccgccgtggccga 244
>ISDisp1
Length = 1321
Score = 32.2 bits (16), Expect = 0.093
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 8 acgcccgccgtggccg 23
||||||||||||||||
Sbjct: 228 acgcccgccgtggccg 243
Score = 32.2 bits (16), Expect = 0.093
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 35 acgcccgccgtggccg 50
||||||||||||||||
Sbjct: 228 acgcccgccgtggccg 243
Score = 32.2 bits (16), Expect = 0.093
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 62 acgcccgccgtggccg 77
||||||||||||||||
Sbjct: 228 acgcccgccgtggccg 243
>ISAar29
Length = 1385
Score = 30.2 bits (15), Expect = 0.37
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 1 gacacccacgcccgc 15
|||||||||||||||
Sbjct: 341 gacacccacgcccgc 355
Score = 30.2 bits (15), Expect = 0.37
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 28 gacacccacgcccgc 42
|||||||||||||||
Sbjct: 341 gacacccacgcccgc 355
Score = 30.2 bits (15), Expect = 0.37
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 55 gacacccacgcccgc 69
|||||||||||||||
Sbjct: 341 gacacccacgcccgc 355
>IS1601
Length = 1417
Score = 30.2 bits (15), Expect = 0.37
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 10 gcccgccgtggccga 24
|||||||||||||||
Sbjct: 1043 gcccgccgtggccga 1057
Score = 30.2 bits (15), Expect = 0.37
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 37 gcccgccgtggccga 51
|||||||||||||||
Sbjct: 1043 gcccgccgtggccga 1057
Score = 30.2 bits (15), Expect = 0.37
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 64 gcccgccgtggccga 78
|||||||||||||||
Sbjct: 1043 gcccgccgtggccga 1057
>ISGrh1
Length = 1673
Score = 28.2 bits (14), Expect = 1.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 9 cgcccgccgtggcc 22
||||||||||||||
Sbjct: 1191 cgcccgccgtggcc 1204
Score = 28.2 bits (14), Expect = 1.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 36 cgcccgccgtggcc 49
||||||||||||||
Sbjct: 1191 cgcccgccgtggcc 1204
Score = 28.2 bits (14), Expect = 1.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 63 cgcccgccgtggcc 76
||||||||||||||
Sbjct: 1191 cgcccgccgtggcc 1204
>ISMdi10
Length = 1186
Score = 28.2 bits (14), Expect = 1.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 55 gacacccacgcccg 68
||||||||||||||
Sbjct: 757 gacacccacgcccg 744
Score = 28.2 bits (14), Expect = 1.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 28 gacacccacgcccg 41
||||||||||||||
Sbjct: 757 gacacccacgcccg 744
Score = 28.2 bits (14), Expect = 1.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 1 gacacccacgcccg 14
||||||||||||||
Sbjct: 757 gacacccacgcccg 744
>ISThsp2
Length = 2644
Score = 28.2 bits (14), Expect = 1.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 15 ccgtggccgagatg 28
||||||||||||||
Sbjct: 990 ccgtggccgagatg 1003
Score = 28.2 bits (14), Expect = 1.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 42 ccgtggccgagatg 55
||||||||||||||
Sbjct: 990 ccgtggccgagatg 1003
Score = 28.2 bits (14), Expect = 1.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 69 ccgtggccgagatg 82
||||||||||||||
Sbjct: 990 ccgtggccgagatg 1003
>ISGdi8
Length = 1356
Score = 28.2 bits (14), Expect = 1.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 10 gcccgccgtggccg 23
||||||||||||||
Sbjct: 1283 gcccgccgtggccg 1296
Score = 28.2 bits (14), Expect = 1.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 37 gcccgccgtggccg 50
||||||||||||||
Sbjct: 1283 gcccgccgtggccg 1296
Score = 28.2 bits (14), Expect = 1.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 64 gcccgccgtggccg 77
||||||||||||||
Sbjct: 1283 gcccgccgtggccg 1296
>ISAli6
Length = 1437
Score = 28.2 bits (14), Expect = 1.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 10 gcccgccgtggccg 23
||||||||||||||
Sbjct: 1348 gcccgccgtggccg 1361
Score = 28.2 bits (14), Expect = 1.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 37 gcccgccgtggccg 50
||||||||||||||
Sbjct: 1348 gcccgccgtggccg 1361
Score = 28.2 bits (14), Expect = 1.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 64 gcccgccgtggccg 77
||||||||||||||
Sbjct: 1348 gcccgccgtggccg 1361
>ISMca1
Length = 1336
Score = 28.2 bits (14), Expect = 1.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 10 gcccgccgtggccg 23
||||||||||||||
Sbjct: 233 gcccgccgtggccg 246
Score = 28.2 bits (14), Expect = 1.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 37 gcccgccgtggccg 50
||||||||||||||
Sbjct: 233 gcccgccgtggccg 246
Score = 28.2 bits (14), Expect = 1.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 64 gcccgccgtggccg 77
||||||||||||||
Sbjct: 233 gcccgccgtggccg 246
>ISAisp2
Length = 1241
Score = 28.2 bits (14), Expect = 1.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 13 cgccgtggccgaga 26
||||||||||||||
Sbjct: 1017 cgccgtggccgaga 1030
Score = 28.2 bits (14), Expect = 1.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 40 cgccgtggccgaga 53
||||||||||||||
Sbjct: 1017 cgccgtggccgaga 1030
Score = 28.2 bits (14), Expect = 1.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 67 cgccgtggccgaga 80
||||||||||||||
Sbjct: 1017 cgccgtggccgaga 1030
>ISMyin1
Length = 1532
Score = 26.3 bits (13), Expect = 5.8
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 8 acgcccgccgtgg 20
|||||||||||||
Sbjct: 781 acgcccgccgtgg 793
Score = 26.3 bits (13), Expect = 5.8
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 35 acgcccgccgtgg 47
|||||||||||||
Sbjct: 781 acgcccgccgtgg 793
Score = 26.3 bits (13), Expect = 5.8
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 62 acgcccgccgtgg 74
|||||||||||||
Sbjct: 781 acgcccgccgtgg 793
>ISNpe31
Length = 1667
Score = 26.3 bits (13), Expect = 5.8
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 61 cacgcccgccgtg 73
|||||||||||||
Sbjct: 42 cacgcccgccgtg 30
Score = 26.3 bits (13), Expect = 5.8
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 34 cacgcccgccgtg 46
|||||||||||||
Sbjct: 42 cacgcccgccgtg 30
Score = 26.3 bits (13), Expect = 5.8
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 7 cacgcccgccgtg 19
|||||||||||||
Sbjct: 42 cacgcccgccgtg 30
>ISHasp1
Length = 1601
Score = 26.3 bits (13), Expect = 5.8
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 61 cacgcccgccgtg 73
|||||||||||||
Sbjct: 40 cacgcccgccgtg 28
Score = 26.3 bits (13), Expect = 5.8
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 34 cacgcccgccgtg 46
|||||||||||||
Sbjct: 40 cacgcccgccgtg 28
Score = 26.3 bits (13), Expect = 5.8
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 7 cacgcccgccgtg 19
|||||||||||||
Sbjct: 40 cacgcccgccgtg 28
>ISSal1
Length = 2528
Score = 26.3 bits (13), Expect = 5.8
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 5 cccacgcccgccg 17
|||||||||||||
Sbjct: 1820 cccacgcccgccg 1832
Score = 26.3 bits (13), Expect = 5.8
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 32 cccacgcccgccg 44
|||||||||||||
Sbjct: 1820 cccacgcccgccg 1832
Score = 26.3 bits (13), Expect = 5.8
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 59 cccacgcccgccg 71
|||||||||||||
Sbjct: 1820 cccacgcccgccg 1832
>ISHmu5
Length = 1847
Score = 26.3 bits (13), Expect = 5.8
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 61 cacgcccgccgtg 73
|||||||||||||
Sbjct: 41 cacgcccgccgtg 29
Score = 26.3 bits (13), Expect = 5.8
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 34 cacgcccgccgtg 46
|||||||||||||
Sbjct: 41 cacgcccgccgtg 29
Score = 26.3 bits (13), Expect = 5.8
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 7 cacgcccgccgtg 19
|||||||||||||
Sbjct: 41 cacgcccgccgtg 29
>ISCap2
Length = 1123
Score = 26.3 bits (13), Expect = 5.8
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 55 gacacccacgccc 67
|||||||||||||
Sbjct: 53 gacacccacgccc 41
Score = 26.3 bits (13), Expect = 5.8
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 28 gacacccacgccc 40
|||||||||||||
Sbjct: 53 gacacccacgccc 41
Score = 26.3 bits (13), Expect = 5.8
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 1 gacacccacgccc 13
|||||||||||||
Sbjct: 53 gacacccacgccc 41
>ISNph5
Length = 1847
Score = 26.3 bits (13), Expect = 5.8
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 61 cacgcccgccgtg 73
|||||||||||||
Sbjct: 41 cacgcccgccgtg 29
Score = 26.3 bits (13), Expect = 5.8
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 34 cacgcccgccgtg 46
|||||||||||||
Sbjct: 41 cacgcccgccgtg 29
Score = 26.3 bits (13), Expect = 5.8
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 7 cacgcccgccgtg 19
|||||||||||||
Sbjct: 41 cacgcccgccgtg 29
>ISMno17
Length = 1534
Score = 26.3 bits (13), Expect = 5.8
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 68 gccgtggccgaga 80
|||||||||||||
Sbjct: 959 gccgtggccgaga 947
Score = 26.3 bits (13), Expect = 5.8
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 41 gccgtggccgaga 53
|||||||||||||
Sbjct: 959 gccgtggccgaga 947
Score = 26.3 bits (13), Expect = 5.8
Identities = 13/13 (100%)
Strand = Plus / Minus
Query: 14 gccgtggccgaga 26
|||||||||||||
Sbjct: 959 gccgtggccgaga 947
>ISThsp19
Length = 2657
Score = 26.3 bits (13), Expect = 5.8
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 16 cgtggccgagatg 28
|||||||||||||
Sbjct: 990 cgtggccgagatg 1002
Score = 26.3 bits (13), Expect = 5.8
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 43 cgtggccgagatg 55
|||||||||||||
Sbjct: 990 cgtggccgagatg 1002
Score = 26.3 bits (13), Expect = 5.8
Identities = 13/13 (100%)
Strand = Plus / Plus
Query: 70 cgtggccgagatg 82
|||||||||||||